pre-miRNA Information
pre-miRNA hsa-mir-6501   
Genomic Coordinates chr21: 33550662 - 33550728
Description Homo sapiens miR-6501 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6501-5p
Sequence 3| AGUUGCCAGGGCUGCCUUUGGU |24
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
1055619 20 ClinVar
COSM5974214 5 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs756127353 5 dbSNP
rs764400023 6 dbSNP
rs753967693 8 dbSNP
rs1283296362 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PRR23A   
Synonyms -
Description proline rich 23A
Transcript NM_001134659   
Expression
Putative miRNA Targets on PRR23A
3'UTR of PRR23A
(miRNA target sites are highlighted)
>PRR23A|NM_001134659|3'UTR
   1 ACTGCTTCCCACAATCCCTTGCCACCGGCTGCGGGTTCTTGTGGATCCTCCAAGACTCACTGTGAGGACTTGCCACAGCC
  81 CGGAAATGCAGCATCTTCATTCATCGACAGCGGGCAGTTGGATTACTGTTGTTTGGGTGGGTTGGTTGGTTGGCTGGCTG
 161 GCTGGTTGGTTTTTTGGCAGAATTCCTTGGTAAGTGGCAGGCAAGGACATGAAAAAAGAAAAGCAGATTCTGGTAAGCAC
 241 CTTTACCAAGAAGAGTAGACCACACATAACCAGTCATGGATTTTCAGATCCCTTGCCTTTGCTGCAGGAGCTGTTACTTC
 321 TGCCTTTGTCACCTTCAGCCAACTGTATCCTCAGTTTCACCCCTACTCTTGCTTAAAGCTCCCTTCAGTTTTCTTTAAAA
 401 TTCCCCCCTTTTTTTTTATCACTTCCATACACCTATCCGTTCTCTCCAATCCAGATCATTGTCTTTCCTTCTTTTTGCAG
 481 TTAGGAATTTACCTATACGATTTCTCCCAACATCCTCTGAGGTGCTTCTGACCACTGATTTTATTTTCCACTTGCTCTCC
 561 TTAACTCCTTTTCCTGGACCTGGACAATCAAGATAAATGCATATTAGATTAGATAGTAAACAAACAACATTCAAATGTAA
 641 TGAATGCACTGGACCTTTTGGAAGTGTTTCTGCAAATAAGAATTTAAGGGCCGGGCGCGATGGCTCACGCCTGTAATCCC
 721 AGCACTTTGGGAGGCCGAGGCGTGTGGATCACCTGCAGTCAGGAGTTCGAGACTAGCCTGGCCAACATGGCGAAACTCCG
 801 TCTCTACTAAAAATACGAAAATTAGCCGGGCATGGTGGCGTGTGCCTGTAATCCCAGCTACTAGCAGGGATGAGGCAGGA
 881 GGAGTGCTTGAACCTGAGAGGCAGAGGTTGCAATGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGCAACAGAGTGAG
 961 ACTCCATCTCAAAAAAAAAAAAAAGAAAACGAAAAAACAATTTAAAAATTAGTGAAAGCAATATTTAATGAGGGAAAGTA
1041 GGAAGTTGTGACACTTTCATTCCAGCAGCATCTTGTACAATGACATATTCTATGTACTTTAACCAATGGGTATTCCTGAA
1121 TTTCAGGGCAGTGTGGGCTTCATCTTGATTTCCTCTCAGGGGTACTCACTCACCTTCACCGCATGGACATTTGGTCTAAT
1201 TTATTTTTGAGAGTTTTTTTCATGCTCTTGAGTCCATCACCCTGAATTGGCAGTCGTTATTTCTTAGTATTATTTCCTTA
1281 ATGTCTTTTTAACTATAAAGGAAAGGAAATATTACAGATAATGTTGTCATATCCTTTGATCCCCACTCTTCTCCCCCATT
1361 CCCAGGGGATTCACATCATGACACAAAGTTGATGGATATCATTCTAGTCAATATATGAAAGCTACATATACATATATATA
1441 TGTATAGATATAAATAAGCAATGTTTATGTTGTTTTCTGGACAATTAAATTTACATAACTACCTCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uggUUUCCGUC-GGGACCGUUga 5'
             ||| |||| ::||||:||  
Target 5' aagAAAAGCAGATTCTGGTAAgc 3'
216 - 238 135.00 -14.30
2
miRNA  3' ugguuuccGUCGGGACCGUUGa 5'
                  |||||: |||||| 
Target 5' ttgcactcCAGCCTGGGCAACa 3'
932 - 953 134.00 -18.50
3
miRNA  3' ugGUUUCCGUCGGGACC-GUUGa 5'
            |:|:  :|| ||||| |||| 
Target 5' ttCGAGACTAG-CCTGGCCAACa 3'
766 - 787 127.00 -16.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1553877 484 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1287422250 2 dbSNP
rs180686917 4 dbSNP
rs765480383 6 dbSNP
rs529747107 7 dbSNP
rs1443914680 8 dbSNP
rs1337606431 9 dbSNP
rs1369460425 12 dbSNP
rs1235801656 17 dbSNP
rs776663477 26 dbSNP
rs1303509779 27 dbSNP
rs1179977284 28 dbSNP
rs764383708 33 dbSNP
rs1249410243 35 dbSNP
rs892056715 38 dbSNP
rs1056686996 39 dbSNP
rs540539328 42 dbSNP
rs1049732983 45 dbSNP
rs1264027648 48 dbSNP
rs1209140055 51 dbSNP
rs1251006190 52 dbSNP
rs905613185 60 dbSNP
rs1044155125 63 dbSNP
rs1469788847 66 dbSNP
rs372423981 73 dbSNP
rs759591785 74 dbSNP
rs931375404 78 dbSNP
rs941857148 80 dbSNP
rs1418706326 81 dbSNP
rs1157279651 82 dbSNP
rs561076491 88 dbSNP
rs1316566959 89 dbSNP
rs909018767 91 dbSNP
rs1325689531 92 dbSNP
rs1392835901 100 dbSNP
rs983319236 105 dbSNP
rs929173484 106 dbSNP
rs774322544 109 dbSNP
rs1328511886 111 dbSNP
rs1221688992 112 dbSNP
rs1308755581 115 dbSNP
rs976739927 115 dbSNP
rs1311039601 132 dbSNP
rs1243740038 135 dbSNP
rs1010187 137 dbSNP
rs1336784035 143 dbSNP
rs907783004 143 dbSNP
rs1253699200 148 dbSNP
rs1018352709 150 dbSNP
rs771050337 154 dbSNP
rs1175581477 156 dbSNP
rs985924348 157 dbSNP
rs1419901864 165 dbSNP
rs938588374 166 dbSNP
rs968843527 169 dbSNP
rs1395670139 176 dbSNP
rs1463474271 176 dbSNP
rs1022176283 185 dbSNP
rs1407191860 190 dbSNP
rs1353388401 197 dbSNP
rs979782759 200 dbSNP
rs968437601 201 dbSNP
rs914333620 202 dbSNP
rs771417279 203 dbSNP
rs1338758052 205 dbSNP
rs1010406856 209 dbSNP
rs76579185 217 dbSNP
rs1399686357 221 dbSNP
rs1167208570 222 dbSNP
rs1257293002 224 dbSNP
rs1462445749 226 dbSNP
rs1035937935 228 dbSNP
rs1185227327 233 dbSNP
rs1253163120 237 dbSNP
rs1481076782 250 dbSNP
rs558402191 253 dbSNP
rs1255814735 265 dbSNP
rs905561391 271 dbSNP
rs1476421076 275 dbSNP
rs1044087737 279 dbSNP
rs941748463 301 dbSNP
rs887544797 304 dbSNP
rs1408714846 315 dbSNP
rs1048016050 316 dbSNP
rs929187366 321 dbSNP
rs1243425179 322 dbSNP
rs1028264522 325 dbSNP
rs544916608 348 dbSNP
rs1456036779 349 dbSNP
rs1269384650 368 dbSNP
rs923168774 369 dbSNP
rs898579529 370 dbSNP
rs1297816814 374 dbSNP
rs976018462 375 dbSNP
rs1308199735 403 dbSNP
rs1342169231 404 dbSNP
rs575961615 405 dbSNP
rs911195947 408 dbSNP
rs1211955229 409 dbSNP
rs1491565604 409 dbSNP
rs556082514 409 dbSNP
rs1491143045 410 dbSNP
rs1244582388 411 dbSNP
rs886237364 413 dbSNP
rs1056979832 417 dbSNP
rs564701976 418 dbSNP
rs938555795 418 dbSNP
rs1383763695 420 dbSNP
rs1317376376 421 dbSNP
rs1444871607 422 dbSNP
rs1343287697 425 dbSNP
rs115469158 426 dbSNP
rs1270752504 427 dbSNP
rs969169136 439 dbSNP
rs189507276 450 dbSNP
rs143202286 451 dbSNP
rs1233605047 454 dbSNP
rs760527597 470 dbSNP
rs1553877 484 dbSNP
rs1035887365 485 dbSNP
rs1398619035 496 dbSNP
rs1161216415 498 dbSNP
rs914323295 504 dbSNP
rs576194745 506 dbSNP
rs1396421470 508 dbSNP
rs534159321 512 dbSNP
rs866649476 514 dbSNP
rs1405497869 517 dbSNP
rs1385664823 520 dbSNP
rs1318765807 524 dbSNP
rs1165029572 529 dbSNP
rs749345608 538 dbSNP
rs1438637279 539 dbSNP
rs1231813140 555 dbSNP
rs1373371903 557 dbSNP
rs1181980856 565 dbSNP
rs770138848 566 dbSNP
rs1023021238 573 dbSNP
rs775669443 580 dbSNP
rs1440040115 583 dbSNP
rs1265932466 592 dbSNP
rs887512962 598 dbSNP
rs1269179122 607 dbSNP
rs571686197 610 dbSNP
rs186407636 613 dbSNP
rs993309821 615 dbSNP
rs1212441851 616 dbSNP
rs148340715 620 dbSNP
rs1468576410 625 dbSNP
rs1180499431 626 dbSNP
rs1294419042 627 dbSNP
rs1470959578 628 dbSNP
rs1040243362 632 dbSNP
rs1238159095 637 dbSNP
rs1459802017 652 dbSNP
rs1167064355 654 dbSNP
rs1396761414 655 dbSNP
rs1387374030 660 dbSNP
rs1328307236 662 dbSNP
rs943232966 666 dbSNP
rs1444712423 669 dbSNP
rs1028568744 671 dbSNP
rs1355269563 672 dbSNP
rs910474013 674 dbSNP
rs995465831 683 dbSNP
rs868067847 689 dbSNP
rs115965992 692 dbSNP
rs1194672313 696 dbSNP
rs1280194871 697 dbSNP
rs1241333750 698 dbSNP
rs549298525 699 dbSNP
rs1270285990 706 dbSNP
rs1439176143 711 dbSNP
rs143353283 713 dbSNP
rs914629224 716 dbSNP
rs1321459704 721 dbSNP
rs1474131143 731 dbSNP
rs372167223 732 dbSNP
rs1404275807 735 dbSNP
rs988935238 736 dbSNP
rs956145355 737 dbSNP
rs781481373 739 dbSNP
rs1461433857 742 dbSNP
rs779696831 742 dbSNP
rs1411837207 746 dbSNP
rs1308920991 747 dbSNP
rs1375098111 754 dbSNP
rs1417472623 755 dbSNP
rs757558487 756 dbSNP
rs1056967768 768 dbSNP
rs1295508923 774 dbSNP
rs1002734824 786 dbSNP
rs1406860036 788 dbSNP
rs981586504 789 dbSNP
rs1470857605 791 dbSNP
rs1375451412 792 dbSNP
rs536452039 812 dbSNP
rs547491331 816 dbSNP
rs1212670838 827 dbSNP
rs1256670762 832 dbSNP
rs1427847568 834 dbSNP
rs1023248865 842 dbSNP
rs1044371344 844 dbSNP
rs1476406767 847 dbSNP
rs1169345933 853 dbSNP
rs947288135 860 dbSNP
rs892756758 876 dbSNP
rs1433111411 878 dbSNP
rs1052798621 882 dbSNP
rs934389284 885 dbSNP
rs1006285519 890 dbSNP
rs1271488671 894 dbSNP
rs951768059 897 dbSNP
rs1488072835 903 dbSNP
rs1285264939 904 dbSNP
rs1228439913 907 dbSNP
rs986923538 908 dbSNP
rs1345278897 913 dbSNP
rs1225712324 914 dbSNP
rs1342895590 918 dbSNP
rs1236127107 920 dbSNP
rs1256338160 922 dbSNP
rs1274346233 926 dbSNP
rs1222823646 930 dbSNP
rs1263717650 941 dbSNP
rs1465296929 943 dbSNP
rs527258847 948 dbSNP
rs138346232 952 dbSNP
rs974263675 960 dbSNP
rs1397958905 969 dbSNP
rs891846844 970 dbSNP
rs1453434454 971 dbSNP
rs76316879 972 dbSNP
rs544653260 980 dbSNP
rs1387690739 981 dbSNP
rs1402100039 982 dbSNP
rs1324630471 984 dbSNP
rs1301476896 985 dbSNP
rs1368197082 985 dbSNP
rs1442622701 985 dbSNP
rs777762354 985 dbSNP
rs1262288005 989 dbSNP
rs1026416285 990 dbSNP
rs1175171666 991 dbSNP
rs993216611 992 dbSNP
rs1329765138 997 dbSNP
rs1213061553 1000 dbSNP
rs963005837 1003 dbSNP
rs1193012808 1004 dbSNP
rs1467233169 1004 dbSNP
rs1015987555 1017 dbSNP
rs1475266813 1018 dbSNP
rs1243073347 1021 dbSNP
rs1414738645 1028 dbSNP
rs982826906 1034 dbSNP
rs575923006 1044 dbSNP
rs1440978564 1046 dbSNP
rs961062521 1048 dbSNP
rs1035136141 1051 dbSNP
rs1262579859 1056 dbSNP
rs1372092682 1058 dbSNP
rs901600054 1069 dbSNP
rs1040192494 1074 dbSNP
rs1350922629 1082 dbSNP
rs1232578674 1087 dbSNP
rs905653701 1093 dbSNP
rs1216748070 1099 dbSNP
rs1360941030 1106 dbSNP
rs1007438423 1109 dbSNP
rs1332273668 1117 dbSNP
rs758946707 1135 dbSNP
rs745343816 1139 dbSNP
rs1254390001 1142 dbSNP
rs1022809757 1144 dbSNP
rs1187718661 1157 dbSNP
rs1011877172 1162 dbSNP
rs1270557707 1167 dbSNP
rs1426091759 1174 dbSNP
rs1432453620 1176 dbSNP
rs562811705 1180 dbSNP
rs1460121104 1181 dbSNP
rs1309518870 1186 dbSNP
rs1370807643 1187 dbSNP
rs1053188112 1191 dbSNP
rs554049781 1207 dbSNP
rs542414972 1212 dbSNP
rs753236541 1213 dbSNP
rs934379996 1224 dbSNP
rs1228877095 1229 dbSNP
rs914556876 1230 dbSNP
rs1053063706 1236 dbSNP
rs934714305 1242 dbSNP
rs1050763217 1251 dbSNP
rs144591279 1256 dbSNP
rs1202553715 1259 dbSNP
rs981565290 1260 dbSNP
rs1276990727 1266 dbSNP
rs1483509052 1270 dbSNP
rs1169098279 1271 dbSNP
rs1409906091 1278 dbSNP
rs948916005 1293 dbSNP
rs921403220 1295 dbSNP
rs1255925712 1299 dbSNP
rs1471923012 1301 dbSNP
rs553943703 1326 dbSNP
rs1416002362 1353 dbSNP
rs916129316 1355 dbSNP
rs1163886909 1372 dbSNP
rs754500824 1384 dbSNP
rs974231076 1387 dbSNP
rs1426168457 1394 dbSNP
rs985035103 1396 dbSNP
rs1390330751 1403 dbSNP
rs952409882 1413 dbSNP
rs181896594 1438 dbSNP
rs960777810 1442 dbSNP
rs1448642878 1444 dbSNP
rs1288167756 1449 dbSNP
rs971726598 1451 dbSNP
rs753368622 1454 dbSNP
rs1299939102 1455 dbSNP
rs190154152 1459 dbSNP
rs558178494 1461 dbSNP
rs1278598735 1462 dbSNP
rs888979522 1464 dbSNP
rs1444540046 1466 dbSNP
rs1022778652 1482 dbSNP
rs538281111 1485 dbSNP
rs1485179470 1492 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugguuuccGUCGGGACCGUUGa 5'
                  |||||: |||||| 
Target 5' uugcacucCAGCCUGGGCAACa 3'
3 - 24
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760628. RNA binding protein: AGO2. Condition:AGO-CLIP-LAPC4_B ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugguuuccGUCGGGACCGUUGa 5'
                  |||||: |||||| 
Target 5' uugcacucCAGCCUGGGCAACa 3'
10 - 31
Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000383163.2 | 3UTR | CAUUGCACUCCAGCCUGGGCAACAGAGUGAGACUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
167 hsa-miR-6501-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT156859 FAM126B family with sequence similarity 126 member B 2 2
MIRT173355 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT369102 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT442037 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT442829 AZIN1 antizyme inhibitor 1 2 2
MIRT443729 CCND2 cyclin D2 2 2
MIRT453771 NUCB1 nucleobindin 1 2 10
MIRT453875 IFRD1 interferon related developmental regulator 1 2 12
MIRT454229 OSBPL10 oxysterol binding protein like 10 2 11
MIRT458829 RPUSD2 RNA pseudouridylate synthase domain containing 2 2 2
MIRT459898 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 10
MIRT464162 VMP1 vacuole membrane protein 1 2 15
MIRT495411 SMAD2 SMAD family member 2 2 2
MIRT496906 TRIM56 tripartite motif containing 56 2 2
MIRT498653 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 6
MIRT498706 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 10
MIRT499308 ZNF485 zinc finger protein 485 2 6
MIRT499707 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 10
MIRT499755 CIRH1A UTP4, small subunit processome component 2 6
MIRT499827 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT503691 MAVS mitochondrial antiviral signaling protein 2 2
MIRT512418 LAYN layilin 2 4
MIRT516232 RAB3B RAB3B, member RAS oncogene family 2 2
MIRT522554 MCAM melanoma cell adhesion molecule 2 4
MIRT523760 FBXO27 F-box protein 27 2 4
MIRT525107 PRKD2 protein kinase D2 2 2
MIRT525919 KIAA0391 KIAA0391 2 2
MIRT527246 COMMD6 COMM domain containing 6 2 2
MIRT527564 ADCY7 adenylate cyclase 7 2 2
MIRT528764 CD1D CD1d molecule 2 2
MIRT529362 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 2 4
MIRT529464 ZNF546 zinc finger protein 546 2 2
MIRT530676 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531635 C19orf52 translocase of inner mitochondrial membrane 29 2 4
MIRT531909 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT532172 SEC14L5 SEC14 like lipid binding 5 2 4
MIRT534234 SLC25A16 solute carrier family 25 member 16 2 4
MIRT534561 RRAGD Ras related GTP binding D 2 2
MIRT534971 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536738 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT538544 CELF1 CUGBP Elav-like family member 1 2 2
MIRT540462 ZNF71 zinc finger protein 71 2 2
MIRT540554 PPIC peptidylprolyl isomerase C 2 2
MIRT543593 KIAA1549 KIAA1549 2 2
MIRT543963 RNF20 ring finger protein 20 2 2
MIRT544047 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT544670 AP1S1 adaptor related protein complex 1 sigma 1 subunit 2 2
MIRT550665 TRAF1 TNF receptor associated factor 1 2 2
MIRT558540 CSNK1G3 casein kinase 1 gamma 3 2 4
MIRT574917 Vmp1 vacuole membrane protein 1 2 9
MIRT575298 Osbpl10 oxysterol binding protein-like 10 2 7
MIRT607960 SNX22 sorting nexin 22 2 2
MIRT610649 TIPRL TOR signaling pathway regulator 2 8
MIRT615899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT617438 CCS copper chaperone for superoxide dismutase 2 2
MIRT617510 C5orf45 MRN complex interacting protein 2 2
MIRT617548 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT620565 WBSCR27 methyltransferase like 27 2 2
MIRT623166 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT624161 DGKE diacylglycerol kinase epsilon 2 2
MIRT626090 MKLN1 muskelin 1 2 2
MIRT627010 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT627073 SF3A1 splicing factor 3a subunit 1 2 2
MIRT627136 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT627340 TSHZ2 teashirt zinc finger homeobox 2 2 2
MIRT627436 TAS2R5 taste 2 receptor member 5 2 2
MIRT628273 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT629091 F2RL1 F2R like trypsin receptor 1 2 4
MIRT629282 UNC13A unc-13 homolog A 2 2
MIRT630122 ARHGEF5 Rho guanine nucleotide exchange factor 5 2 2
MIRT630247 SMTNL2 smoothelin like 2 2 2
MIRT631260 CENPM centromere protein M 2 2
MIRT631336 CD300E CD300e molecule 2 2
MIRT631399 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT632593 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT632991 DUSP18 dual specificity phosphatase 18 2 2
MIRT633079 CXorf21 chromosome X open reading frame 21 2 2
MIRT634223 TMEM132B transmembrane protein 132B 2 2
MIRT635046 MYH11 myosin heavy chain 11 2 2
MIRT636444 LRCH3 leucine rich repeats and calponin homology domain containing 3 2 2
MIRT636649 CDK4 cyclin dependent kinase 4 2 2
MIRT637129 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT637282 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT637527 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT637783 OLA1 Obg like ATPase 1 2 2
MIRT637920 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT638238 SLC1A5 solute carrier family 1 member 5 2 2
MIRT638444 PLXDC2 plexin domain containing 2 2 2
MIRT639765 GPR45 G protein-coupled receptor 45 2 2
MIRT640437 ERVMER34-1 endogenous retrovirus group MER34 member 1, envelope 2 2
MIRT643006 ZNF829 zinc finger protein 829 2 2
MIRT644233 SLC35E3 solute carrier family 35 member E3 2 2
MIRT644661 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT644957 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT645086 SLC35E2B solute carrier family 35 member E2B 2 2
MIRT645256 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT645861 GBP6 guanylate binding protein family member 6 2 2
MIRT645987 ACP6 acid phosphatase 6, lysophosphatidic 2 2
MIRT646502 FAM217B family with sequence similarity 217 member B 2 2
MIRT646811 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647706 NFX1 nuclear transcription factor, X-box binding 1 2 2
MIRT649657 TEP1 telomerase associated protein 1 2 2
MIRT650550 YIPF4 Yip1 domain family member 4 2 2
MIRT650785 GSR glutathione-disulfide reductase 2 2
MIRT651461 XIAP X-linked inhibitor of apoptosis 2 2
MIRT652098 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT654117 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT658901 DPY19L4 dpy-19 like 4 2 2
MIRT659370 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT662537 MTAP methylthioadenosine phosphorylase 2 2
MIRT662617 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 2
MIRT663491 IYD iodotyrosine deiodinase 2 2
MIRT663899 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT664552 MKI67IP nucleolar protein interacting with the FHA domain of MKI67 1 1
MIRT664582 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT664953 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT665193 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 2
MIRT665446 WDR17 WD repeat domain 17 2 2
MIRT665894 TCEANC2 transcription elongation factor A N-terminal and central domain containing 2 2 2
MIRT666480 SBNO1 strawberry notch homolog 1 2 2
MIRT666514 RNF170 ring finger protein 170 2 2
MIRT666692 RBM23 RNA binding motif protein 23 2 2
MIRT666791 PSMD1 proteasome 26S subunit, non-ATPase 1 2 2
MIRT667453 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT667553 LRAT lecithin retinol acyltransferase 2 4
MIRT667744 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT668080 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT668114 GK5 glycerol kinase 5 (putative) 2 2
MIRT668501 ESYT2 extended synaptotagmin 2 2 2
MIRT668942 CNKSR3 CNKSR family member 3 2 2
MIRT670408 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT671134 CD226 CD226 molecule 2 2
MIRT671919 PLEKHS1 pleckstrin homology domain containing S1 2 4
MIRT672287 GP2 glycoprotein 2 2 2
MIRT672427 POLR2D RNA polymerase II subunit D 2 2
MIRT672762 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672923 LRRC2 leucine rich repeat containing 2 2 2
MIRT673150 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673309 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT673560 PLA2G16 phospholipase A2 group XVI 2 2
MIRT673895 DCTN6 dynactin subunit 6 2 2
MIRT674513 PRR23A proline rich 23A 2 2
MIRT674614 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT674747 SLC16A1 solute carrier family 16 member 1 2 2
MIRT675693 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT675890 SNAP29 synaptosome associated protein 29 2 2
MIRT685271 KIAA1143 KIAA1143 2 2
MIRT686057 KCNA7 potassium voltage-gated channel subfamily A member 7 2 2
MIRT693886 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT695594 TMEM199 transmembrane protein 199 2 2
MIRT696592 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT698041 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT699907 RUNDC1 RUN domain containing 1 2 2
MIRT706608 CYB5B cytochrome b5 type B 2 2
MIRT706628 PNPT1 polyribonucleotide nucleotidyltransferase 1 2 2
MIRT706640 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT706676 COL13A1 collagen type XIII alpha 1 chain 2 2
MIRT706723 RFK riboflavin kinase 2 2
MIRT706857 MAFF MAF bZIP transcription factor F 2 2
MIRT706891 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT706958 FANCC Fanconi anemia complementation group C 2 2
MIRT706976 XPO5 exportin 5 2 2
MIRT707010 RRP36 ribosomal RNA processing 36 2 2
MIRT707028 ACTR5 ARP5 actin related protein 5 homolog 2 2
MIRT707068 MED29 mediator complex subunit 29 2 2
MIRT713253 ZFP30 ZFP30 zinc finger protein 2 2
MIRT719130 NR2F6 nuclear receptor subfamily 2 group F member 6 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6501 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-6501 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-6501-5p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6501-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-6501-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6501-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-6501-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6501-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6501-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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