pre-miRNA Information
pre-miRNA hsa-mir-4640   
Genomic Coordinates chr6: 30890883 - 30890972
Description Homo sapiens miR-4640 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4640-5p
Sequence 9| UGGGCCAGGGAGCAGCUGGUGGG |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1392105945 7 dbSNP
rs939712790 9 dbSNP
rs762825841 15 dbSNP
rs71552023 20 dbSNP
rs1305909531 21 dbSNP
rs750017220 21 dbSNP
rs1375436057 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B32FZJ miR-4640 Safety Biomarker (SAF) Clinical/Experimental Data Expression lower Urine Quantitative polymerase chain reaction
Gene Information
Gene Symbol UGDH   
Synonyms GDH, UDP-GlcDH, UDPGDH, UGD
Description UDP-glucose 6-dehydrogenase
Transcript NM_001184700   
Other Transcripts NM_001184701 , NM_003359   
Expression
Putative miRNA Targets on UGDH
3'UTR of UGDH
(miRNA target sites are highlighted)
>UGDH|NM_001184700|3'UTR
   1 AGATTGCCATTTTTATTTGTGATTTTTTTTTTTTTTTTTTGGTACTTCAGGATAGCAAATATCTATCTGCTATTAAATGG
  81 TAAATGAACCAAGTGTTTTTTTTTGTTTTTTTTTTGAGACAGAGTCTCACTGTTGCCCAGGCTGGAGTGCAGTGGTGCAA
 161 TCTCGGCTCACTGCAAGCTCTGCTTCCCAGGTTCACGCCATTCTCCTGGCTCAGCCTCCCAAGTAGCTGGGACTACAGGC
 241 ACCCGCCACAGTGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTGAGCCAGGATGGTCTCAATC
 321 TCCTGACCTTGTGAACCACCCGTCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACGCCTGGCCCATGAA
 401 CCAAGTGTTTTTAAGGAAACAAAACTATTTTTTTAATCATCAGATTTATACTAGCTATATGGATATTAGCATATCTGGTA
 481 ATTATGAATCTAGAATTTTTTTACATATTTTTATAATACTGTTAGCTCAGTTATTGGATGAGTGAAAGATAATCATGTTG
 561 GTTTTAATAGTGTCAATTTTTGTAAAATAAAAATTAAACTTCAAACTCTTTACTTTATAAATTGTCCATAGGCCACACTT
 641 TAATATCACATTATAAAGGGAAGGACAGTCTTCATTCCTCCTGGTTATTGGTTTGTTTGTCATTAAAGATATATTTTGAA
 721 TCCATGAAATTGCTATGCTAAACAGCCTTTACATGTATGGTCTGGTTAAAGTTCCTTTGTTCCTTTTGTTTTAATAAAAT
 801 GTGTCACTGATTTTTTAGCTCAAAATCATCACTGTTAATTTCCAGTCACCCCAAATATGGTTAAAAGATTTTTTTTTTAA
 881 TCATGAAGAGAAAATTAGTAGCATTTCTTTCTCTCCCCATTATTTATTGGTTTTCCTCACTAATCTTTTTTTTTTTAGTC
 961 CAAAAGCCAAAAATATTTATCTTGGTTTTACATTTTAATTTCCATTCTTAATTGTAATTTTTTTCTTTAAATAAGGAAAC
1041 CAATATAATCTCATGTATAAAAACTTAAATATTTTACAAGTTACATATAGCATCATTCTAAAATAAGAATTTTTTTTGTT
1121 TTCTGTCTGCTTTTTTCTTATGTCTCTTGTTGAGTTTTATATTTTCAGTGGTTATTTTTGCTTGTGTTAGATCATTATTA
1201 AAATATATCCAATGTCCCTTTGATACTTGTGCTCTGCTGAGAATGTACAGTTTGCATTAAACATCCCAGGTCTCATCCTT
1281 CAGGAATTTTGCAGTTCAATGAGAAGAGGGAGACAAATATAAAGATGAGGACAGAAGCATCTCTACAGATGAAAATTACA
1361 TAAATAAAACATTCTCCATCAACAACTAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggGUGGUCGACGAGGGACCGGGu 5'
            ||||| | |   |||||||| 
Target 5' gcCACCA-C-G---CCTGGCCCa 3'
379 - 396 152.00 -27.40
2
miRNA  3' ggGUGGUCGACGAGGGACCGGGu 5'
            |:|||  | || ||||||:| 
Target 5' caCGCCA--TTCT-CCTGGCTCa 3'
194 - 213 144.00 -23.60
3
miRNA  3' ggGUGGUCGACG--AGGGACCGGgu 5'
            |||| ||  |  | ||||||:  
Target 5' ggCACCCGCCACAGTGCCTGGCTaa 3'
238 - 262 127.00 -24.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26584180 15 COSMIC
COSN20099966 23 COSMIC
COSN29051066 23 COSMIC
COSN30156189 51 COSMIC
COSN30558399 95 COSMIC
COSN30570231 95 COSMIC
COSN30648583 96 COSMIC
COSN14111246 104 COSMIC
COSN14111243 105 COSMIC
COSN20099963 105 COSMIC
COSN14111241 106 COSMIC
COSN8490715 118 COSMIC
COSN30143959 161 COSMIC
COSN1296865 214 COSMIC
COSN20099958 946 COSMIC
COSN6830315 1144 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1180965913 3 dbSNP
rs774232472 4 dbSNP
rs768851040 6 dbSNP
rs1251984053 14 dbSNP
rs780662298 15 dbSNP
rs770254620 18 dbSNP
rs746196826 19 dbSNP
rs1254167605 21 dbSNP
rs968229282 22 dbSNP
rs1487332458 24 dbSNP
rs1283838509 25 dbSNP
rs1215747324 26 dbSNP
rs781707095 27 dbSNP
rs756902603 28 dbSNP
rs1226395614 32 dbSNP
rs77838464 37 dbSNP
rs202227157 39 dbSNP
rs1235593127 41 dbSNP
rs200660972 41 dbSNP
rs56814765 41 dbSNP
rs60656244 41 dbSNP
rs747530231 41 dbSNP
rs750682668 41 dbSNP
rs757453539 41 dbSNP
rs761117281 41 dbSNP
rs777047292 41 dbSNP
rs796374269 41 dbSNP
rs796764519 41 dbSNP
rs878908036 41 dbSNP
rs879029271 41 dbSNP
rs879085598 41 dbSNP
rs1271823919 42 dbSNP
rs1293501722 42 dbSNP
rs1491349512 42 dbSNP
rs1239976242 43 dbSNP
rs1318828816 44 dbSNP
rs751292134 47 dbSNP
rs1416127760 50 dbSNP
rs1021582678 58 dbSNP
rs1286042029 73 dbSNP
rs1445355997 78 dbSNP
rs1231734839 79 dbSNP
rs1009738946 80 dbSNP
rs1476060326 83 dbSNP
rs1334415236 87 dbSNP
rs1162572684 89 dbSNP
rs372155217 90 dbSNP
rs911671935 94 dbSNP
rs375681686 95 dbSNP
rs559757240 96 dbSNP
rs74462207 104 dbSNP
rs1291880165 105 dbSNP
rs1313097994 105 dbSNP
rs1398866320 105 dbSNP
rs370656620 105 dbSNP
rs1218149361 106 dbSNP
rs397761986 106 dbSNP
rs398083020 107 dbSNP
rs1263029993 114 dbSNP
rs1432060980 115 dbSNP
rs1486803142 116 dbSNP
rs58175625 116 dbSNP
rs1347355404 117 dbSNP
rs577021038 119 dbSNP
rs1255172456 125 dbSNP
rs1419462411 129 dbSNP
rs931850463 131 dbSNP
rs1049471606 135 dbSNP
rs995703876 136 dbSNP
rs1376875376 139 dbSNP
rs1416704688 141 dbSNP
rs1165107562 142 dbSNP
rs756509423 143 dbSNP
rs1475912172 148 dbSNP
rs543016246 158 dbSNP
rs543695037 160 dbSNP
rs138137686 164 dbSNP
rs978094764 165 dbSNP
rs539247532 167 dbSNP
rs113565511 169 dbSNP
rs536209475 171 dbSNP
rs1350188621 174 dbSNP
rs1208921357 181 dbSNP
rs970769221 189 dbSNP
rs866935209 192 dbSNP
rs1468258276 196 dbSNP
rs774224917 203 dbSNP
rs937983361 205 dbSNP
rs1274046121 206 dbSNP
rs1439063488 208 dbSNP
rs1235314195 209 dbSNP
rs58958665 214 dbSNP
rs1174899310 221 dbSNP
rs1354817692 223 dbSNP
rs979541040 225 dbSNP
rs992301675 228 dbSNP
rs1300318323 231 dbSNP
rs1012800741 233 dbSNP
rs961179816 241 dbSNP
rs1294904360 242 dbSNP
rs959574210 244 dbSNP
rs113746940 245 dbSNP
rs914031358 246 dbSNP
rs139160141 251 dbSNP
rs1308348144 253 dbSNP
rs1229315214 257 dbSNP
rs1440630733 264 dbSNP
rs1395596048 269 dbSNP
rs1326202018 271 dbSNP
rs966236814 289 dbSNP
rs1019139894 295 dbSNP
rs1462660488 305 dbSNP
rs1466742924 311 dbSNP
rs1007787655 327 dbSNP
rs953734087 328 dbSNP
rs146689241 330 dbSNP
rs189575810 341 dbSNP
rs534375273 342 dbSNP
rs1036843999 345 dbSNP
rs890183216 346 dbSNP
rs1453592630 347 dbSNP
rs550036670 361 dbSNP
rs761878107 372 dbSNP
rs931770762 373 dbSNP
rs746663330 377 dbSNP
rs1276554720 379 dbSNP
rs777230044 386 dbSNP
rs1054063099 387 dbSNP
rs1044117607 388 dbSNP
rs536467992 392 dbSNP
rs567524250 394 dbSNP
rs946796428 402 dbSNP
rs913986496 408 dbSNP
rs936590442 410 dbSNP
rs758070221 411 dbSNP
rs1301895166 414 dbSNP
rs1486563262 428 dbSNP
rs1234143833 435 dbSNP
rs1372223992 438 dbSNP
rs1262097710 442 dbSNP
rs1477697308 448 dbSNP
rs1306049709 449 dbSNP
rs978040875 450 dbSNP
rs1388205863 454 dbSNP
rs988212555 456 dbSNP
rs142543281 478 dbSNP
rs1297169891 485 dbSNP
rs912099643 492 dbSNP
rs1296574539 495 dbSNP
rs1340167799 501 dbSNP
rs917966991 502 dbSNP
rs745613346 508 dbSNP
rs1376740772 516 dbSNP
rs148153514 521 dbSNP
rs752959753 530 dbSNP
rs1213909804 531 dbSNP
rs1284829227 535 dbSNP
rs1171718385 541 dbSNP
rs776603078 544 dbSNP
rs1433991096 547 dbSNP
rs1027145781 554 dbSNP
rs1239542057 557 dbSNP
rs115329965 567 dbSNP
rs1181776571 569 dbSNP
rs1409437341 583 dbSNP
rs1456491159 584 dbSNP
rs1156978981 606 dbSNP
rs1360005813 618 dbSNP
rs1195252419 624 dbSNP
rs1435528777 626 dbSNP
rs961600552 627 dbSNP
rs11544853 647 dbSNP
rs1315009803 647 dbSNP
rs552249257 649 dbSNP
rs532495796 663 dbSNP
rs1004521538 666 dbSNP
rs1046573 677 dbSNP
rs1481669694 683 dbSNP
rs1051907675 687 dbSNP
rs555032653 691 dbSNP
rs1348019156 695 dbSNP
rs1212495283 713 dbSNP
rs1276135908 720 dbSNP
rs1441040821 738 dbSNP
rs74535222 743 dbSNP
rs1233938724 753 dbSNP
rs1034888219 754 dbSNP
rs900280924 755 dbSNP
rs1379697560 757 dbSNP
rs796576230 762 dbSNP
rs1053610554 765 dbSNP
rs905125273 776 dbSNP
rs1282989564 777 dbSNP
rs1400419398 779 dbSNP
rs1413669937 784 dbSNP
rs1043701683 791 dbSNP
rs936527449 792 dbSNP
rs569187280 801 dbSNP
rs946692893 805 dbSNP
rs1444432995 817 dbSNP
rs1330600543 825 dbSNP
rs574953532 827 dbSNP
rs1305872961 831 dbSNP
rs1052469069 855 dbSNP
rs1391561417 858 dbSNP
rs371670655 859 dbSNP
rs1351839632 867 dbSNP
rs570636726 869 dbSNP
rs1303162394 879 dbSNP
rs879734036 879 dbSNP
rs1238161442 881 dbSNP
rs777135902 886 dbSNP
rs550898179 890 dbSNP
rs912026682 898 dbSNP
rs949347656 901 dbSNP
rs1451370023 905 dbSNP
rs367874306 916 dbSNP
rs186287281 922 dbSNP
rs3172642 926 dbSNP
rs959471445 927 dbSNP
rs1473679274 935 dbSNP
rs920858270 940 dbSNP
rs1255560870 946 dbSNP
rs558615963 949 dbSNP
rs1330032903 957 dbSNP
rs35551098 957 dbSNP
rs78496970 957 dbSNP
rs879186142 957 dbSNP
rs199867019 958 dbSNP
rs920026585 973 dbSNP
rs1271579407 977 dbSNP
rs1320430233 987 dbSNP
rs538723626 1000 dbSNP
rs1187298763 1010 dbSNP
rs1217260391 1021 dbSNP
rs1257946212 1030 dbSNP
rs973709971 1035 dbSNP
rs1212177211 1057 dbSNP
rs962675622 1076 dbSNP
rs974243182 1077 dbSNP
rs1194100332 1079 dbSNP
rs1265692847 1084 dbSNP
rs1486323759 1089 dbSNP
rs1476698325 1093 dbSNP
rs1260234465 1109 dbSNP
rs1203845646 1111 dbSNP
rs1015309696 1118 dbSNP
rs11544852 1118 dbSNP
rs1161394889 1118 dbSNP
rs1389314548 1118 dbSNP
rs1400839326 1118 dbSNP
rs1261647422 1123 dbSNP
rs961548919 1125 dbSNP
rs1330756593 1129 dbSNP
rs1015818602 1132 dbSNP
rs987049704 1133 dbSNP
rs955643452 1134 dbSNP
rs1398520616 1137 dbSNP
rs1277908632 1138 dbSNP
rs1356539425 1140 dbSNP
rs11931052 1149 dbSNP
rs960453719 1159 dbSNP
rs1288396480 1162 dbSNP
rs996270162 1165 dbSNP
rs1487400344 1171 dbSNP
rs1413630495 1193 dbSNP
rs1193252289 1199 dbSNP
rs1355472198 1212 dbSNP
rs900226665 1214 dbSNP
rs1336113027 1215 dbSNP
rs34844833 1219 dbSNP
rs1185311948 1223 dbSNP
rs1380414931 1232 dbSNP
rs1034825924 1239 dbSNP
rs1470172163 1244 dbSNP
rs181729245 1247 dbSNP
rs1450 1249 dbSNP
rs1000621202 1267 dbSNP
rs902359077 1271 dbSNP
rs969276440 1272 dbSNP
rs143808039 1274 dbSNP
rs1313121592 1276 dbSNP
rs1403289587 1281 dbSNP
rs1398220291 1296 dbSNP
rs547660133 1299 dbSNP
rs896421895 1300 dbSNP
rs1340450605 1302 dbSNP
rs1055113905 1307 dbSNP
rs1164402301 1308 dbSNP
rs1311498747 1310 dbSNP
rs1475584701 1319 dbSNP
rs892457784 1343 dbSNP
rs1281384508 1345 dbSNP
rs1484108836 1346 dbSNP
rs1052393869 1348 dbSNP
rs1255359370 1360 dbSNP
rs1008896823 1378 dbSNP
rs1370220445 1388 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ggGUGGUCGACGAGGGACCGGGu 5'
            ||||| | |   |||||||| 
Target 5' gcCACCA-C-G---CCUGGCCC- 3'
15 - 31
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000316423.6 | 3UTR | GAUUACAGGUGUGAGCCACCACGCCUGGCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
87 hsa-miR-4640-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT100106 ABT1 activator of basal transcription 1 2 8
MIRT248144 LMBR1L limb development membrane protein 1 like 2 2
MIRT327062 KLHL15 kelch like family member 15 2 2
MIRT347231 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT450221 CENPN centromere protein N 2 2
MIRT451264 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT452701 C1orf226 chromosome 1 open reading frame 226 2 2
MIRT453212 CERS1 ceramide synthase 1 2 2
MIRT454822 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT454883 RAD50 RAD50 double strand break repair protein 2 2
MIRT455783 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT455858 TMEM254 transmembrane protein 254 2 2
MIRT457615 UPK3BL uroplakin 3B like 1 2 2
MIRT457822 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein 2 4
MIRT458344 NOC2L NOC2 like nucleolar associated transcriptional repressor 2 2
MIRT458376 ITM2C integral membrane protein 2C 2 2
MIRT458928 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459066 WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 2 2
MIRT460138 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460818 FSTL4 follistatin like 4 2 2
MIRT461285 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 2
MIRT462738 EFNB1 ephrin B1 2 2
MIRT464556 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT477910 DUSP2 dual specificity phosphatase 2 2 2
MIRT479073 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 4
MIRT479534 CDC5L cell division cycle 5 like 2 4
MIRT485628 EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 2 2
MIRT489896 PPIC peptidylprolyl isomerase C 2 4
MIRT490737 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT491201 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT492681 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 2 2
MIRT494593 ATG7 autophagy related 7 2 2
MIRT495061 PADI3 peptidyl arginine deiminase 3 2 4
MIRT496623 TMEM67 transmembrane protein 67 2 2
MIRT497177 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT498217 TLN2 talin 2 2 2
MIRT498306 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT499668 NPHP3 nephrocystin 3 2 2
MIRT508080 ANKRD52 ankyrin repeat domain 52 2 2
MIRT509707 ANKRD23 ankyrin repeat domain 23 2 2
MIRT509841 FOS Fos proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT512814 ARRDC2 arrestin domain containing 2 2 2
MIRT513353 SLIT1 slit guidance ligand 1 2 2
MIRT514293 FXYD5 FXYD domain containing ion transport regulator 5 2 2
MIRT516598 FAM89A family with sequence similarity 89 member A 2 4
MIRT516616 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT518348 CCL5 C-C motif chemokine ligand 5 2 2
MIRT520130 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT522072 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT526461 OSBPL5 oxysterol binding protein like 5 2 2
MIRT528278 MBL2 mannose binding lectin 2 2 2
MIRT534844 RAB15 RAB15, member RAS oncogene family 2 4
MIRT542245 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT543299 ZNF585B zinc finger protein 585B 2 2
MIRT552456 ZNF410 zinc finger protein 410 2 2
MIRT553641 TJAP1 tight junction associated protein 1 2 2
MIRT557103 HOXA3 homeobox A3 2 2
MIRT570782 FANCA Fanconi anemia complementation group A 2 2
MIRT630912 ZMAT2 zinc finger matrin-type 2 2 2
MIRT631034 ZNF878 zinc finger protein 878 2 2
MIRT639017 AAK1 AP2 associated kinase 1 2 2
MIRT648596 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT648939 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT652834 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT659347 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT664163 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT670511 ZSCAN22 zinc finger and SCAN domain containing 22 2 2
MIRT671246 TMEM41B transmembrane protein 41B 2 2
MIRT672120 ATP6V0A2 ATPase H+ transporting V0 subunit a2 2 2
MIRT672313 CD3D CD3d molecule 2 2
MIRT672543 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT673036 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT673814 DARS aspartyl-tRNA synthetase 2 2
MIRT674858 GINM1 glycoprotein integral membrane 1 2 2
MIRT674970 SH3BP2 SH3 domain binding protein 2 2 2
MIRT675185 KIF1C kinesin family member 1C 2 2
MIRT675219 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT675558 MED16 mediator complex subunit 16 2 2
MIRT682566 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2 2
MIRT684640 PDE4C phosphodiesterase 4C 2 2
MIRT689722 ATXN2 ataxin 2 2 2
MIRT693594 SLC39A1 solute carrier family 39 member 1 2 2
MIRT704745 CDKN2B cyclin dependent kinase inhibitor 2B 2 2
MIRT712779 ZNF154 zinc finger protein 154 2 2
MIRT718118 OTOF otoferlin 2 2
MIRT720115 SAMD4A sterile alpha motif domain containing 4A 2 2
MIRT720275 EIF1AD eukaryotic translation initiation factor 1A domain containing 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4640 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4640 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4640-5p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4640-5p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4640-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-4640-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4640-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4640-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4640-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4640-5p Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

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