pre-miRNA Information
pre-miRNA hsa-mir-640   
Genomic Coordinates chr19: 19435063 - 19435158
Synonyms MIRN640, hsa-mir-640, MIR640
Description Homo sapiens miR-640 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-640
Sequence 61| AUGAUCCAGGAACCUGCCUCU |81
Evidence Experimental
Experiments RT-PCR
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30153378 1 COSMIC
COSN23015356 12 COSMIC
COSN30513185 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs111726405 1 dbSNP
rs765622881 2 dbSNP
rs1249744889 6 dbSNP
rs752995186 12 dbSNP
rs758746736 13 dbSNP
rs918887970 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TRIP11   
Synonyms ACG1A, CEV14, GMAP-210, GMAP210, TRIP-11, TRIP230
Description thyroid hormone receptor interactor 11
Transcript NM_004239   
Expression
Putative miRNA Targets on TRIP11
3'UTR of TRIP11
(miRNA target sites are highlighted)
>TRIP11|NM_004239|3'UTR
   1 ATGATTCTCAAGCCAGAGACAATCTAGCACTTTAAAGAAACCATGAACACTATATGTATGTACTTTATCACAAAGTGGCC
  81 TTTGGGGAGAAAGTCATGTATTTGTTCGCAATTATGCTTTCTCTGAATTTAATAAAAATATTCCTAATGCTTTTAGAAAC
 161 TGCAGGTGTCAGGAGCAAGTGTTTGCTATATAATCTGCTTTATTCCTTCTGATTTGACCTAATTTAAGCTAGGAACATTT
 241 AATTTATCTTTTACCTTAATTTACAAAAATACAGACAGACAAAAATACTAGTAGCTATATGGCAGCTTTTTATTTCCTTT
 321 TGTGATTTCCAAGCTCATTTAAGCTAGAGATTGTGGTTTATCAAGAGAGTGTTTTTTTTTTTTAAACGAAGAATAAAAAA
 401 ATACTAGTAGTGGCTTCTCTGCATAGTGCAGAAAGTTGATTTGAAGCATATATTGATCATCTTTAGAGGACTTTGTGGAG
 481 ACAGGCCAACAAGATTGTTGCTGGAAGGTCATAGGTTCCCTGAGGTGAAGTATGTATTTGGTCCTGTGCAATATTATCAT
 561 GTGTGTAGATTCTTTTTTTGTTTGTTTTAAATAGAGATGGGGTCTCACTATGTTGCCAGGCTGGCCTCAAACTCCTGGGC
 641 TCAAGTGATCCTCCCACCTCAGCCTCCCAAAGTGCTGGGATTAAGGCATGAGCCACTGCGCCTGGCCCTGTGTGTAAATT
 721 CATGTGACTACCACCACAGGCAAGACACGGAAGACTTCCATTACAAGCATCCCCCTGTGTTGCCCTCTCATAATCATTGC
 801 CACCTCTCTCCCTGGCCCTCTCCTTAATCCCTGACAACCACTTACTGTTCTCCATCTCAGTCATTTTGTTATTTTGAGAA
 881 TGTTATATAAATGGAATCAATATATACCCTCTTGAGACTGGCTTTTTTTCACTCAGCATAATTCCCTTGAGATCCATCCA
 961 AGGCTTTGGATGTATCACTAGTTTGTTCCTTTTTATTGTTGAGCATATAGTGCAGATATATCACTTAGTTTTAACAGCTA
1041 AGGTATCTATTTAAAGATACCATCTTAAAACTAAATGTTACACAAATTCATGCAACTTTCATATAAGCATTAAACCATAC
1121 AGCTGCATCTACGTAAGTATAATTAGCAAAATCACTGAACATGCCACTTCCTGCCTCCGTCTGCGGTGTTGACATATGAG
1201 GTACAGCAATCCGAGAGTCAACTGTTATCACGGTGGCCACTGAGGGCAGTGAAATCACTTTGATAGCACCAGTACCCAGA
1281 TGTTTGAAACTTAAGAAAGTATTTCTTTAATTTTTCATAAACCCATCATAAAAAAAAAATCCCGACTTGAAACTTAACTG
1361 TATCTGGATGTTCATATTTTTATTAGTTGTTGAAGTTGTACATTTAAAAAGATATTTCTTGCAAATTTTGTAAATTTCTA
1441 TATGCTTTTAAAATAGAAACATTTGTATAACAAGGAAGGATGAAAATAAAACAAATTCAAATATGTGAATAGTCCTGGCT
1521 GAGGCCAGAACTAAATTTGGTTATTTGCAAGTTTTACTGTGATTAACTGTACTTTCTAATGTATTTGGAAGACTGGAAGT
1601 CTTAATTCCATGTTGATGGGTGAAACTTGTTTTTCTGAAAAATGAAGTAACTGAAAATGCTGCTTCAGAATGTCTTGTAT
1681 CTCCTTAGATAACTAATTTATATTGCCATTCTTTATTTACTATACTTTAAAGGAAGTTGTCATGCAAGTTCTATATTAGA
1761 ACTGTCAAACTGCCTCTTGGTTTTTGCCTATTATTATTTCTCTGTGAGTTGTTACTCCTTGGTTTTTATATGCTCCTAAC
1841 AAAGATACTTTCACTGACTATCCTACATTATTTGCTGCTTGCCATTGAAATTTCATTTCAGTGTGGAGAAATGAAATACT
1921 AGTTTCTAAGTTAAAAAAGACACATGGTCCTTTATTTTTAAGAAATAGAATATGTAAAAAGTTTTCTCTTTTAATTTGAA
2001 AAAGAGATGCATGGTTGGTATTTAAGTAGTATGTCATCATATTTGAAATGCCTTTTGTGACATTTTTGAGTATTTCCTTC
2081 TCTGACCAAAACAACTTGTCCGCCTCTCATCCCATGGTTTAACGTAAGTTTAAAAGCTGTTGTGGGTGGATTGCATAGCT
2161 AAACATCACAGAGCATGATATTAAATGGCTGCTATTTAAATAAATATGTGACCTTGTCCTAAAGCTATAATACTGGCCGG
2241 GCACAGTGGCTCACGCCTGTAATCCCAGAACTTTGGGAGGGTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCAAGACC
2321 AGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCAGGCGCCTATAATCC
2401 CAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGACCCCGGGAAGTGGAGGTTGCAGTTAGCAACCACTCCACTGCAC
2481 TCCAGCCTGAGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGCTATAGTACCTAATGTTTTCAT
2561 TGTGTCATTGAAACTATAGCTGACTGGTATGTATACTAAGTGTTCGTTGATCTAAACCAGATATAAGTCATTGACTTTTC
2641 TGAAACTTAGTTGTGTCAGAGATGAACCACCTGCTCACTGAACCGTCTTAGTAACCAGTGATGAAGCATATAATTCTAAT
2721 GTTGGCAATAGGACATTGCTAACAGTGCGTTTAACTGCAATATTTTAACTACAGTAATTTTTCTGTTTATTTCTCTATCC
2801 ACTCAGTAGAATTTGTGGTTGAATTCCACCTTCGCTGCCATAGTTTTTTACCACATTCCTAATGGTTTTCAACCTCTATA
2881 CTGTAGTAGAAAATTCATCTAACTACTGAATTTAATTTTAGCATAATACTGGATCAAATTGTTTGAATTTTCATTCCTGT
2961 CATTTTTGATTTTTAAAAAATGAAACAAAACTAAACAACAAAACCCTAGGAAAAGAATGGCTTCTTTCCAACTAGTCAAT
3041 TAAAACGTCCAGTATCTCCCCAAATAAAGCCTTAGGTTTCTTTTAACCTCTTAATGGTTAATTGAAAAGAGTACAGAAAC
3121 TATCAAAATACTTATCCAATCAATGGGGGGAAAAGCTATGTCTTCAGGGACAGTAGAGTGATGAGAATTTTTTAGAAAAC
3201 ACTATTATCCATCAAACTTAAAAGCATTTGGACCTGATATTTAAAGATAATGAAGTTTTCCACATATTGAAGTATTCAAG
3281 ACATCTTCCATCCACAAAAATTTATCTTTAAGTTTTGTAAATATCAAGTAAGTATAGATGATATTTATTTTATATATTCC
3361 TATGGAAAAAATGCTACTTTAATGTTCTGACATTTGTGATTATTTGCCAGTCTTTACTTTTTAACTTATTAAAAAGTTAA
3441 ATACTTATTAAGGTTTCTCTATGTAAAACAATTTAAATTGTCTTTTGATTTTTAGGGAAATATCTAAACGTGGGAAATTT
3521 CCAACGCAACCTTAATATTAGGTTGTGTTATTTATAGAGCTAAAGTTAATGCATTTTTGAATTTCTCAGGAGCACTGCAA
3601 GGCAAAAAAATACTCCAAATAAAAATGATATATGTAAGTTGGCAATGTCTTCAGTCACAATAAAAAAAATTTTTAGCAAA
3681 CA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUCCG-UCCAAGGACCUAGUa 5'
            :||: ||||   ||||||| 
Target 5' gaGGGTGAGGTGGGTGGATCAc 3'
2277 - 2298 155.00 -17.20
2
miRNA  3' ucucCGUCCAAGGACCUAGUa 5'
              |||   | |||||||| 
Target 5' tttaGCATAATACTGGATCAa 3'
2917 - 2937 153.00 -13.60
3
miRNA  3' ucuCCGUCCAAGG--ACCUAGUa 5'
             ||| ||   |  ||| ||| 
Target 5' actGGCCGGGCACAGTGGCTCAc 3'
2232 - 2254 116.00 -9.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
314924 9 ClinVar
314923 100 ClinVar
887572 107 ClinVar
887571 162 ClinVar
314922 163 ClinVar
314921 246 ClinVar
887377 273 ClinVar
887376 288 ClinVar
314920 290 ClinVar
887375 297 ClinVar
314919 312 ClinVar
314918 345 ClinVar
314917 362 ClinVar
314914 384 ClinVar
314915 384 ClinVar
314916 384 ClinVar
886381 387 ClinVar
314913 388 ClinVar
314912 409 ClinVar
314911 430 ClinVar
314910 491 ClinVar
314909 544 ClinVar
314908 610 ClinVar
314907 628 ClinVar
884358 664 ClinVar
884357 749 ClinVar
314906 840 ClinVar
314905 891 ClinVar
314904 904 ClinVar
314903 930 ClinVar
884356 938 ClinVar
314902 952 ClinVar
314901 1060 ClinVar
887507 1175 ClinVar
887506 1185 ClinVar
314900 1194 ClinVar
887505 1212 ClinVar
314899 1294 ClinVar
314897 1340 ClinVar
314898 1340 ClinVar
314896 1374 ClinVar
887319 1521 ClinVar
314895 1554 ClinVar
887318 1591 ClinVar
314894 1744 ClinVar
COSN30526506 3 COSMIC
COSN30113964 7 COSMIC
COSN28707399 30 COSMIC
COSN31539192 65 COSMIC
COSN23493824 87 COSMIC
COSN30460521 107 COSMIC
COSN30167629 140 COSMIC
COSN30126849 141 COSMIC
COSN30170073 150 COSMIC
COSN30120942 151 COSMIC
COSN25344854 252 COSMIC
COSN5752160 325 COSMIC
COSN29902742 371 COSMIC
COSN15736328 406 COSMIC
COSN189659 417 COSMIC
COSN6639452 771 COSMIC
COSN6264488 1196 COSMIC
COSN28277724 1197 COSMIC
COSN21613163 1521 COSMIC
COSN22499023 1800 COSMIC
COSN17610219 1874 COSMIC
COSN5172791 2010 COSMIC
COSN20613278 2124 COSMIC
COSN8461862 2498 COSMIC
COSN7033679 2587 COSMIC
COSN24416270 3104 COSMIC
COSN5393078 3149 COSMIC
COSN2512232 3582 COSMIC
rs1133441 952 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs201626889 7 dbSNP
rs1191658625 8 dbSNP
rs373269085 9 dbSNP
rs1438900990 12 dbSNP
rs775880564 14 dbSNP
rs1302650533 15 dbSNP
rs1430925171 25 dbSNP
rs769402471 33 dbSNP
rs35979920 34 dbSNP
rs745585138 36 dbSNP
rs780662900 41 dbSNP
rs1426326637 43 dbSNP
rs541929543 44 dbSNP
rs1335387061 49 dbSNP
rs1191346150 51 dbSNP
rs1350083336 52 dbSNP
rs1163700696 57 dbSNP
rs571487642 59 dbSNP
rs1414576388 60 dbSNP
rs1486642839 63 dbSNP
rs148788333 64 dbSNP
rs1205310720 70 dbSNP
rs1256218711 75 dbSNP
rs1484429456 76 dbSNP
rs1003356588 90 dbSNP
rs905040222 93 dbSNP
rs1250300734 99 dbSNP
rs144403505 100 dbSNP
rs1488881926 101 dbSNP
rs778402674 107 dbSNP
rs1219563945 108 dbSNP
rs994779372 111 dbSNP
rs1413081862 118 dbSNP
rs899163285 119 dbSNP
rs1036399031 129 dbSNP
rs1223073097 134 dbSNP
rs1318449538 162 dbSNP
rs142907939 163 dbSNP
rs1279248485 164 dbSNP
rs1228810064 165 dbSNP
rs890505756 170 dbSNP
rs1257526314 171 dbSNP
rs1349760504 172 dbSNP
rs1483883041 173 dbSNP
rs1177089050 176 dbSNP
rs184397874 184 dbSNP
rs1304844887 193 dbSNP
rs1387992031 194 dbSNP
rs1367772574 197 dbSNP
rs528231076 223 dbSNP
rs1394767382 231 dbSNP
rs559064726 236 dbSNP
rs111335604 246 dbSNP
rs181964672 247 dbSNP
rs1359768754 249 dbSNP
rs574607215 250 dbSNP
rs978962806 273 dbSNP
rs1390425436 277 dbSNP
rs1296429295 281 dbSNP
rs1160329096 282 dbSNP
rs866665280 285 dbSNP
rs1302346266 286 dbSNP
rs1362555474 286 dbSNP
rs1368344991 287 dbSNP
rs61988386 288 dbSNP
rs189206458 290 dbSNP
rs754526389 296 dbSNP
rs1266688652 297 dbSNP
rs1189568147 302 dbSNP
rs956593038 311 dbSNP
rs1466390345 312 dbSNP
rs565776732 312 dbSNP
rs927709344 318 dbSNP
rs552112596 323 dbSNP
rs866372666 334 dbSNP
rs1209096291 336 dbSNP
rs17127786 345 dbSNP
rs1252687376 352 dbSNP
rs1452841028 361 dbSNP
rs886050902 362 dbSNP
rs969230769 370 dbSNP
rs1023512731 372 dbSNP
rs1312729142 377 dbSNP
rs1409527318 383 dbSNP
rs547231708 384 dbSNP
rs886050900 384 dbSNP
rs886050901 384 dbSNP
rs375437590 387 dbSNP
rs1360828614 388 dbSNP
rs1442801877 388 dbSNP
rs148331500 388 dbSNP
rs1438135964 391 dbSNP
rs1366892169 394 dbSNP
rs550124730 395 dbSNP
rs994750418 402 dbSNP
rs886050899 409 dbSNP
rs766014821 415 dbSNP
rs898011913 417 dbSNP
rs1199770707 420 dbSNP
rs1272965476 426 dbSNP
rs12587248 430 dbSNP
rs1215905796 438 dbSNP
rs1014851665 443 dbSNP
rs1475176829 447 dbSNP
rs1383171787 450 dbSNP
rs1184864460 452 dbSNP
rs1004861051 468 dbSNP
rs1478120006 487 dbSNP
rs1174691511 490 dbSNP
rs886050898 491 dbSNP
rs890465812 493 dbSNP
rs1392164623 497 dbSNP
rs1462878351 507 dbSNP
rs1323953052 509 dbSNP
rs1466960680 510 dbSNP
rs1377587126 511 dbSNP
rs561443261 512 dbSNP
rs748904826 520 dbSNP
rs1290145072 530 dbSNP
rs1171809819 534 dbSNP
rs146377485 536 dbSNP
rs528182792 544 dbSNP
rs996687076 545 dbSNP
rs1333323901 546 dbSNP
rs1235549878 547 dbSNP
rs184381829 548 dbSNP
rs900674107 555 dbSNP
rs1043237760 558 dbSNP
rs1244039061 563 dbSNP
rs142041142 565 dbSNP
rs913464612 574 dbSNP
rs1259344965 580 dbSNP
rs111671120 610 dbSNP
rs767414780 620 dbSNP
rs1406926577 623 dbSNP
rs935002474 626 dbSNP
rs886050897 628 dbSNP
rs1319931994 630 dbSNP
rs761771580 644 dbSNP
rs1413704412 649 dbSNP
rs1231425389 650 dbSNP
rs981882229 653 dbSNP
rs969578812 656 dbSNP
rs867366579 657 dbSNP
rs138892598 664 dbSNP
rs371618988 670 dbSNP
rs1222394914 675 dbSNP
rs1324343229 675 dbSNP
rs1288508963 677 dbSNP
rs1336512988 679 dbSNP
rs1354664916 680 dbSNP
rs1210270276 692 dbSNP
rs775382943 699 dbSNP
rs1486629044 700 dbSNP
rs973193669 712 dbSNP
rs963224170 716 dbSNP
rs1468443387 726 dbSNP
rs1311652331 732 dbSNP
rs1380545682 734 dbSNP
rs1431697340 738 dbSNP
rs866420212 748 dbSNP
rs150189603 749 dbSNP
rs1376696370 751 dbSNP
rs1005236867 752 dbSNP
rs954713169 754 dbSNP
rs1335683898 755 dbSNP
rs1440540762 760 dbSNP
rs574340821 767 dbSNP
rs554335371 771 dbSNP
rs1377932926 772 dbSNP
rs1424238707 775 dbSNP
rs1233791607 776 dbSNP
rs1278312906 776 dbSNP
rs765373897 778 dbSNP
rs1347274488 779 dbSNP
rs1256715738 793 dbSNP
rs191926382 800 dbSNP
rs996266340 803 dbSNP
rs188282372 804 dbSNP
rs1484003131 809 dbSNP
rs1435993464 811 dbSNP
rs1274667005 818 dbSNP
rs1183731081 826 dbSNP
rs1238519778 838 dbSNP
rs368630607 840 dbSNP
rs1337005785 842 dbSNP
rs1396480593 845 dbSNP
rs1466167183 852 dbSNP
rs1166796823 856 dbSNP
rs1396431431 859 dbSNP
rs1408643045 865 dbSNP
rs1333822270 878 dbSNP
rs371281137 884 dbSNP
rs558705069 887 dbSNP
rs886050896 891 dbSNP
rs1043143152 893 dbSNP
rs1234124858 899 dbSNP
rs886050895 904 dbSNP
rs1176001959 905 dbSNP
rs538991353 908 dbSNP
rs1200405560 910 dbSNP
rs1258608673 921 dbSNP
rs1467902784 923 dbSNP
rs1340313300 927 dbSNP
rs74071653 930 dbSNP
rs560559229 932 dbSNP
rs1053357219 933 dbSNP
rs1370799451 936 dbSNP
rs759610969 938 dbSNP
rs1133441 952 dbSNP
rs1046454340 957 dbSNP
rs1324286995 964 dbSNP
rs1393161100 970 dbSNP
rs1387526446 974 dbSNP
rs771106033 976 dbSNP
rs536940509 977 dbSNP
rs1472595632 981 dbSNP
rs184974871 985 dbSNP
rs947705316 1007 dbSNP
rs1334058856 1014 dbSNP
rs916309581 1015 dbSNP
rs867996273 1024 dbSNP
rs941830320 1025 dbSNP
rs1252502478 1040 dbSNP
rs141846781 1044 dbSNP
rs1435629362 1049 dbSNP
rs1291570466 1057 dbSNP
rs1209989472 1058 dbSNP
rs10142576 1060 dbSNP
rs565750748 1061 dbSNP
rs1163267461 1067 dbSNP
rs750287532 1069 dbSNP
rs1370514814 1076 dbSNP
rs1458714662 1082 dbSNP
rs1271620420 1085 dbSNP
rs1230673042 1101 dbSNP
rs879441674 1111 dbSNP
rs954819980 1118 dbSNP
rs1383072728 1122 dbSNP
rs192900131 1123 dbSNP
rs1030255072 1127 dbSNP
rs112186522 1132 dbSNP
rs532167152 1133 dbSNP
rs1324297405 1139 dbSNP
rs964696472 1140 dbSNP
rs563135185 1146 dbSNP
rs543741546 1159 dbSNP
rs1011642446 1161 dbSNP
rs115549826 1162 dbSNP
rs1032291331 1167 dbSNP
rs148265064 1170 dbSNP
rs1003052177 1173 dbSNP
rs1439636951 1175 dbSNP
rs1162488429 1177 dbSNP
rs773743269 1178 dbSNP
rs558744139 1179 dbSNP
rs540801549 1182 dbSNP
rs947672512 1184 dbSNP
rs1424828686 1185 dbSNP
rs886050894 1194 dbSNP
rs894841495 1197 dbSNP
rs1037437055 1201 dbSNP
rs1421685830 1203 dbSNP
rs1468535343 1204 dbSNP
rs1247886365 1211 dbSNP
rs572224478 1213 dbSNP
rs1304549738 1220 dbSNP
rs559045946 1231 dbSNP
rs941796281 1239 dbSNP
rs545153463 1248 dbSNP
rs907690758 1249 dbSNP
rs1279136730 1275 dbSNP
rs545076255 1281 dbSNP
rs143185383 1294 dbSNP
rs556270720 1295 dbSNP
rs1176995542 1298 dbSNP
rs1483833952 1298 dbSNP
rs1236690502 1299 dbSNP
rs1441798535 1312 dbSNP
rs536952851 1321 dbSNP
rs1210959323 1323 dbSNP
rs1330337031 1324 dbSNP
rs1179546573 1325 dbSNP
rs1284013652 1326 dbSNP
rs1222508353 1327 dbSNP
rs1347781488 1329 dbSNP
rs142125073 1330 dbSNP
rs112946346 1340 dbSNP
rs1359685600 1340 dbSNP
rs35251290 1340 dbSNP
rs554428111 1343 dbSNP
rs1435897667 1344 dbSNP
rs1447208969 1349 dbSNP
rs1369018455 1354 dbSNP
rs1322871694 1369 dbSNP
rs74801826 1374 dbSNP
rs964665996 1382 dbSNP
rs1389015659 1386 dbSNP
rs1158117864 1388 dbSNP
rs1398827723 1399 dbSNP
rs1204384988 1411 dbSNP
rs1256687489 1418 dbSNP
rs1459399635 1422 dbSNP
rs1021622571 1429 dbSNP
rs1252670137 1430 dbSNP
rs1427236746 1454 dbSNP
rs1487595126 1455 dbSNP
rs1192995677 1462 dbSNP
rs1172634944 1475 dbSNP
rs1425909861 1478 dbSNP
rs1453335832 1481 dbSNP
rs1168497537 1486 dbSNP
rs1425684434 1496 dbSNP
rs1466000456 1504 dbSNP
rs778215907 1520 dbSNP
rs187716047 1521 dbSNP
rs990186548 1524 dbSNP
rs1438122406 1552 dbSNP
rs11848545 1554 dbSNP
rs1212263933 1558 dbSNP
rs1276932542 1564 dbSNP
rs748810507 1565 dbSNP
rs1320602118 1588 dbSNP
rs1465078571 1596 dbSNP
rs1241845404 1609 dbSNP
rs1003430838 1610 dbSNP
rs1444604163 1613 dbSNP
rs907380552 1624 dbSNP
rs1280010137 1626 dbSNP
rs532099279 1630 dbSNP
rs1485623219 1632 dbSNP
rs1233642358 1648 dbSNP
rs1023624795 1652 dbSNP
rs1478070972 1657 dbSNP
rs1345899516 1664 dbSNP
rs1411300330 1666 dbSNP
rs1299919829 1683 dbSNP
rs1013198043 1694 dbSNP
rs1361551423 1695 dbSNP
rs1344230972 1697 dbSNP
rs1397653761 1707 dbSNP
rs1299430843 1716 dbSNP
rs1483608048 1720 dbSNP
rs894810276 1722 dbSNP
rs868140405 1725 dbSNP
rs1230386068 1728 dbSNP
rs1290932629 1732 dbSNP
rs1428445329 1732 dbSNP
rs941682510 1735 dbSNP
rs569643233 1742 dbSNP
rs11848512 1744 dbSNP
rs373850857 1748 dbSNP
rs1373037511 1753 dbSNP
rs923154910 1755 dbSNP
rs1182215167 1760 dbSNP
rs1406803747 1773 dbSNP
rs1417406272 1774 dbSNP
rs1038928290 1777 dbSNP
rs529960221 1788 dbSNP
rs1433538315 1790 dbSNP
rs1334161742 1795 dbSNP
rs1339216110 1799 dbSNP
rs1450651294 1800 dbSNP
rs567556191 1808 dbSNP
rs1285085572 1815 dbSNP
rs560817356 1818 dbSNP
rs1238188309 1819 dbSNP
rs557265184 1822 dbSNP
rs527514763 1828 dbSNP
rs878961978 1830 dbSNP
rs1185118226 1842 dbSNP
rs1276485712 1851 dbSNP
rs1444006536 1857 dbSNP
rs1210560697 1863 dbSNP
rs1232052076 1863 dbSNP
rs1474010984 1864 dbSNP
rs990071586 1876 dbSNP
rs1180175885 1877 dbSNP
rs1380525547 1886 dbSNP
rs1453333073 1890 dbSNP
rs564926708 1901 dbSNP
rs956084650 1925 dbSNP
rs1238552840 1935 dbSNP
rs1210712157 1946 dbSNP
rs1400093003 1948 dbSNP
rs1484982736 1956 dbSNP
rs1311819025 1963 dbSNP
rs146996061 1969 dbSNP
rs1232634320 1970 dbSNP
rs1273080997 1976 dbSNP
rs1347075366 1984 dbSNP
rs1219685121 1986 dbSNP
rs866776467 1986 dbSNP
rs755807809 1990 dbSNP
rs971953831 2008 dbSNP
rs576417089 2009 dbSNP
rs1238421561 2013 dbSNP
rs562901829 2039 dbSNP
rs1196171580 2040 dbSNP
rs182746515 2041 dbSNP
rs141205757 2060 dbSNP
rs780987837 2070 dbSNP
rs74071650 2073 dbSNP
rs764286864 2074 dbSNP
rs1464441363 2075 dbSNP
rs1293694584 2088 dbSNP
rs751521022 2101 dbSNP
rs534473222 2102 dbSNP
rs763994945 2103 dbSNP
rs1309284804 2106 dbSNP
rs763062534 2109 dbSNP
rs578154435 2114 dbSNP
rs1167964703 2123 dbSNP
rs558028397 2124 dbSNP
rs997316432 2131 dbSNP
rs901667946 2137 dbSNP
rs1258424332 2138 dbSNP
rs1355238562 2149 dbSNP
rs538731101 2150 dbSNP
rs1406742086 2155 dbSNP
rs1207752462 2161 dbSNP
rs1038809297 2165 dbSNP
rs1451747625 2173 dbSNP
rs1414897957 2174 dbSNP
rs569623878 2175 dbSNP
rs1477088445 2195 dbSNP
rs914466932 2207 dbSNP
rs1474488492 2212 dbSNP
rs549383315 2217 dbSNP
rs752718288 2230 dbSNP
rs1161720535 2233 dbSNP
rs1393140014 2234 dbSNP
rs934644038 2238 dbSNP
rs1297584242 2239 dbSNP
rs1338379269 2251 dbSNP
rs1480388532 2254 dbSNP
rs376503013 2255 dbSNP
rs981930168 2259 dbSNP
rs535880874 2260 dbSNP
rs1223982354 2265 dbSNP
rs971539503 2271 dbSNP
rs1356536573 2274 dbSNP
rs566904652 2281 dbSNP
rs1283209291 2289 dbSNP
rs1273538149 2305 dbSNP
rs1232499084 2306 dbSNP
rs192591310 2314 dbSNP
rs1290200991 2324 dbSNP
rs991614818 2332 dbSNP
rs527579732 2343 dbSNP
rs1185796842 2344 dbSNP
rs1370422250 2355 dbSNP
rs547881162 2358 dbSNP
rs545645008 2364 dbSNP
rs565095813 2373 dbSNP
rs58083391 2376 dbSNP
rs1295958765 2388 dbSNP
rs1358759472 2389 dbSNP
rs531852799 2390 dbSNP
rs1004493513 2394 dbSNP
rs1394798551 2401 dbSNP
rs1394078562 2410 dbSNP
rs1314520934 2418 dbSNP
rs753904020 2421 dbSNP
rs766668063 2423 dbSNP
rs1238907430 2439 dbSNP
rs576989766 2441 dbSNP
rs866604733 2442 dbSNP
rs1414834041 2444 dbSNP
rs57302486 2449 dbSNP
rs1261885367 2459 dbSNP
rs1026016576 2466 dbSNP
rs1199125885 2467 dbSNP
rs1419020176 2469 dbSNP
rs574111319 2472 dbSNP
rs112673109 2479 dbSNP
rs997600122 2480 dbSNP
rs1378695676 2482 dbSNP
rs1193023534 2484 dbSNP
rs901554586 2486 dbSNP
rs540938726 2492 dbSNP
rs578149497 2493 dbSNP
rs1318436772 2500 dbSNP
rs537358634 2501 dbSNP
rs1445730896 2509 dbSNP
rs1269788624 2511 dbSNP
rs1239608909 2512 dbSNP
rs1281905512 2513 dbSNP
rs1378638336 2514 dbSNP
rs1240257443 2516 dbSNP
rs1304180025 2517 dbSNP
rs1220490447 2518 dbSNP
rs1231767737 2519 dbSNP
rs1038778340 2531 dbSNP
rs1371246669 2536 dbSNP
rs1324885429 2537 dbSNP
rs1168199233 2538 dbSNP
rs1177880329 2538 dbSNP
rs1192977178 2538 dbSNP
rs1198400770 2538 dbSNP
rs1236600443 2538 dbSNP
rs1292561049 2538 dbSNP
rs1308949468 2538 dbSNP
rs1402061585 2538 dbSNP
rs1424483257 2538 dbSNP
rs1431485752 2538 dbSNP
rs1459202848 2538 dbSNP
rs1462099800 2538 dbSNP
rs1464959606 2538 dbSNP
rs547805058 2538 dbSNP
rs554486078 2538 dbSNP
rs869139862 2538 dbSNP
rs7159383 2541 dbSNP
rs1477416409 2542 dbSNP
rs1168300101 2543 dbSNP
rs571451027 2548 dbSNP
rs1410295905 2562 dbSNP
rs1289844815 2566 dbSNP
rs538022016 2576 dbSNP
rs1347746495 2577 dbSNP
rs1459009154 2581 dbSNP
rs1362610616 2582 dbSNP
rs1178301057 2594 dbSNP
rs1054282019 2595 dbSNP
rs1346726353 2597 dbSNP
rs1399877342 2599 dbSNP
rs1454810133 2604 dbSNP
rs553711929 2605 dbSNP
rs773649445 2606 dbSNP
rs903174430 2607 dbSNP
rs1191908540 2621 dbSNP
rs1215516320 2624 dbSNP
rs1289503432 2627 dbSNP
rs1045696127 2631 dbSNP
rs950095179 2632 dbSNP
rs1466432197 2650 dbSNP
rs1292530279 2657 dbSNP
rs1487991821 2658 dbSNP
rs60140419 2659 dbSNP
rs59452573 2661 dbSNP
rs991582830 2670 dbSNP
rs941492714 2677 dbSNP
rs1411189529 2683 dbSNP
rs1425149648 2684 dbSNP
rs187759464 2685 dbSNP
rs569043305 2697 dbSNP
rs772567099 2697 dbSNP
rs951630314 2701 dbSNP
rs555870676 2703 dbSNP
rs1283901410 2708 dbSNP
rs1377285255 2712 dbSNP
rs975751309 2720 dbSNP
rs535942686 2724 dbSNP
rs1234763832 2729 dbSNP
rs1347891476 2732 dbSNP
rs566961982 2739 dbSNP
rs1302083869 2741 dbSNP
rs1214525934 2746 dbSNP
rs965697674 2748 dbSNP
rs12433888 2749 dbSNP
rs1209206491 2758 dbSNP
rs1007286767 2760 dbSNP
rs1382064461 2771 dbSNP
rs1183861416 2779 dbSNP
rs1383425432 2782 dbSNP
rs1379296087 2785 dbSNP
rs1305178650 2797 dbSNP
rs1410805653 2798 dbSNP
rs1401753789 2799 dbSNP
rs892969993 2803 dbSNP
rs1374864581 2804 dbSNP
rs1357827633 2807 dbSNP
rs1454914486 2810 dbSNP
rs1337710090 2815 dbSNP
rs762148773 2816 dbSNP
rs115409540 2833 dbSNP
rs1373894095 2834 dbSNP
rs568433195 2850 dbSNP
rs371798290 2855 dbSNP
rs1276374938 2872 dbSNP
rs1443990657 2873 dbSNP
rs74071649 2883 dbSNP
rs1046076207 2884 dbSNP
rs1456123792 2888 dbSNP
rs950049942 2888 dbSNP
rs1232904269 2892 dbSNP
rs1228770862 2897 dbSNP
rs571421519 2907 dbSNP
rs894507900 2910 dbSNP
rs551568141 2913 dbSNP
rs1202055433 2915 dbSNP
rs1423669757 2921 dbSNP
rs1055887933 2922 dbSNP
rs1177523098 2928 dbSNP
rs1399883727 2938 dbSNP
rs1444779296 2941 dbSNP
rs1331103716 2944 dbSNP
rs375445722 2950 dbSNP
rs1208155838 2972 dbSNP
rs1273067887 2975 dbSNP
rs1343831014 2990 dbSNP
rs1251590674 2994 dbSNP
rs1227148915 2997 dbSNP
rs1315705513 3007 dbSNP
rs1324981481 3022 dbSNP
rs1273263353 3046 dbSNP
rs941461706 3047 dbSNP
rs1196056752 3048 dbSNP
rs1245487464 3051 dbSNP
rs1481680695 3052 dbSNP
rs774911646 3065 dbSNP
rs777094092 3076 dbSNP
rs769094974 3086 dbSNP
rs1200624235 3087 dbSNP
rs569051108 3090 dbSNP
rs551632378 3100 dbSNP
rs909978089 3113 dbSNP
rs549545564 3115 dbSNP
rs1169937595 3123 dbSNP
rs1355418445 3135 dbSNP
rs1397470970 3135 dbSNP
rs529366752 3136 dbSNP
rs1404856246 3142 dbSNP
rs1321599515 3144 dbSNP
rs1347357259 3149 dbSNP
rs1311107384 3150 dbSNP
rs1431754143 3151 dbSNP
rs930154531 3151 dbSNP
rs1338233828 3158 dbSNP
rs1397463871 3162 dbSNP
rs1167623010 3165 dbSNP
rs922850840 3166 dbSNP
rs771246592 3170 dbSNP
rs1251541997 3172 dbSNP
rs1355126716 3173 dbSNP
rs1207580919 3179 dbSNP
rs528171931 3181 dbSNP
rs1460673992 3182 dbSNP
rs1293258154 3194 dbSNP
rs879678352 3202 dbSNP
rs370856613 3207 dbSNP
rs1490363061 3210 dbSNP
rs1223943785 3211 dbSNP
rs977438042 3216 dbSNP
rs1427173132 3223 dbSNP
rs1371083490 3224 dbSNP
rs965663488 3228 dbSNP
rs1017262803 3233 dbSNP
rs1161559134 3234 dbSNP
rs1367583219 3237 dbSNP
rs985834904 3240 dbSNP
rs748805488 3248 dbSNP
rs1256782000 3255 dbSNP
rs1297565093 3258 dbSNP
rs11846315 3268 dbSNP
rs1002300611 3271 dbSNP
rs1033176122 3272 dbSNP
rs1439116776 3276 dbSNP
rs998673771 3277 dbSNP
rs967627122 3280 dbSNP
rs1316675790 3282 dbSNP
rs1024211172 3293 dbSNP
rs1238779465 3299 dbSNP
rs1285949870 3302 dbSNP
rs1485142474 3309 dbSNP
rs769388338 3312 dbSNP
rs1194816964 3317 dbSNP
rs1014221332 3326 dbSNP
rs1182021757 3327 dbSNP
rs894473763 3328 dbSNP
rs1055772494 3333 dbSNP
rs1005561564 3344 dbSNP
rs1334738107 3362 dbSNP
rs1292038326 3371 dbSNP
rs888509881 3372 dbSNP
rs10135585 3373 dbSNP
rs1336367806 3376 dbSNP
rs780900121 3377 dbSNP
rs10135582 3384 dbSNP
rs1382996604 3394 dbSNP
rs1238800970 3396 dbSNP
rs1306407663 3399 dbSNP
rs922786036 3405 dbSNP
rs1393202600 3409 dbSNP
rs1241871418 3411 dbSNP
rs1261794690 3415 dbSNP
rs1166800198 3417 dbSNP
rs1245203623 3423 dbSNP
rs1461820347 3428 dbSNP
rs564663554 3429 dbSNP
rs1178123216 3447 dbSNP
rs183045912 3448 dbSNP
rs1420922617 3452 dbSNP
rs911480184 3453 dbSNP
rs1376990187 3461 dbSNP
rs1468053390 3465 dbSNP
rs1471126212 3472 dbSNP
rs1178245209 3480 dbSNP
rs985718553 3487 dbSNP
rs768157176 3490 dbSNP
rs1328845510 3499 dbSNP
rs1374935553 3509 dbSNP
rs1180507209 3510 dbSNP
rs1435685121 3517 dbSNP
rs1330961540 3523 dbSNP
rs1254543649 3524 dbSNP
rs575797788 3525 dbSNP
rs1214689274 3526 dbSNP
rs555534936 3547 dbSNP
rs1198293523 3550 dbSNP
rs1468369367 3551 dbSNP
rs36079364 3554 dbSNP
rs925696966 3555 dbSNP
rs1479394784 3557 dbSNP
rs1201347840 3564 dbSNP
rs1429800490 3569 dbSNP
rs977603104 3570 dbSNP
rs1167966354 3575 dbSNP
rs1355861530 3576 dbSNP
rs967217294 3579 dbSNP
rs544471295 3590 dbSNP
rs1014105242 3598 dbSNP
rs1403686727 3600 dbSNP
rs1285711018 3601 dbSNP
rs1333038517 3606 dbSNP
rs1218393912 3615 dbSNP
rs1293723815 3618 dbSNP
rs542321992 3630 dbSNP
rs376016405 3631 dbSNP
rs531107553 3631 dbSNP
rs1264892514 3645 dbSNP
rs1440455262 3656 dbSNP
rs1034288967 3669 dbSNP
rs1005529085 3670 dbSNP
rs573352110 3670 dbSNP
rs769531981 3670 dbSNP
rs1421245530 3673 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084041. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep1 HITS-CLIP data was present in GSM1084042. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep2 HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084041
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep1
Location of target site ENST00000267622.4 | 3UTR | GGAGGGUGAGGUGGGUGGAUCACCUGAGGUCAGGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084042
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep2
Location of target site ENST00000267622.4 | 3UTR | UGAGGUGGGUGGAUCACCUGAGGUCAGGAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000267622.4 | 3UTR | GGGAGGGUGAGGUGGGUGGAUCACCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.582 1.4e-3 0.544 3.0e-3 24 Click to see details
GSE26953 Aortic valvular endothelial cells -0.442 1.5e-2 -0.414 2.2e-2 24 Click to see details
GSE27834 Pluripotent stem cells -0.466 3.4e-2 -0.474 3.2e-2 16 Click to see details
GSE28260 Renal cortex and medulla 0.503 4.0e-2 0.466 5.4e-2 13 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.336 5.0e-2 0.209 1.6e-1 25 Click to see details
GSE42095 Differentiated embryonic stem cells -0.347 5.2e-2 0.000 5.0e-1 23 Click to see details
GSE21849 B cell lymphoma -0.276 7.4e-2 -0.225 1.2e-1 29 Click to see details
GSE19536 Breast cancer 0.142 7.9e-2 0.092 1.8e-1 100 Click to see details
GSE19783 ER- ER- breast cancer 0.156 8.5e-2 0.103 1.8e-1 79 Click to see details
GSE14794 Lymphoblastoid cells -0.117 1.4e-1 -0.113 1.4e-1 90 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.243 1.5e-1 0.114 3.2e-1 20 Click to see details
GSE21687 Ependynoma primary tumors -0.129 1.5e-1 -0.073 2.8e-1 64 Click to see details
GSE19783 ER+ ER+ breast cancer -0.2 2.0e-1 -0.212 1.8e-1 20 Click to see details
GSE17306 Multiple myeloma -0.104 2.4e-1 0.014 4.6e-1 49 Click to see details
GSE32688 Pancreatic cancer 0.12 2.6e-1 0.051 3.9e-1 32 Click to see details
GSE19350 CNS germ cell tumors -0.105 3.7e-1 -0.091 3.9e-1 12 Click to see details
GSE38226 Liver fibrosis 0.06 4.0e-1 -0.119 3.0e-1 21 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.027 4.5e-1 0.233 1.3e-1 25 Click to see details
GSE17498 Multiple myeloma -0.005 4.9e-1 -0.033 4.2e-1 40 Click to see details
GSE17498 Multiple myeloma -0.005 4.9e-1 -0.033 4.2e-1 40 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
194 hsa-miR-640 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT097121 TNPO1 transportin 1 2 2
MIRT115090 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT204603 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204634 MOB4 MOB family member 4, phocein 2 8
MIRT344451 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT405772 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT445876 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT497418 FAM46A family with sequence similarity 46 member A 2 2
MIRT504394 HMX2 H6 family homeobox 2 2 4
MIRT504691 SLCO2B1 solute carrier organic anion transporter family member 2B1 2 8
MIRT512386 MTRNR2L3 MT-RNR2-like 3 2 6
MIRT513003 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT513084 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT519122 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT523836 F2RL1 F2R like trypsin receptor 1 2 2
MIRT565356 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT575895 Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT576894 Poteg POTE ankyrin domain family, member G 2 2
MIRT613780 RPS6 ribosomal protein S6 2 2
MIRT613934 POLR3A RNA polymerase III subunit A 2 2
MIRT614348 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614534 NOA1 nitric oxide associated 1 2 2
MIRT617019 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT618247 MANEAL mannosidase endo-alpha like 2 2
MIRT619051 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619442 ZNF517 zinc finger protein 517 2 2
MIRT619723 FPR2 formyl peptide receptor 2 2 2
MIRT620179 TRIM72 tripartite motif containing 72 2 2
MIRT620370 ANKRD62 ankyrin repeat domain 62 2 2
MIRT621263 RTN2 reticulon 2 2 2
MIRT621463 APOH apolipoprotein H 2 2
MIRT621571 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621683 TSPYL1 TSPY like 1 2 2
MIRT622866 PDE7A phosphodiesterase 7A 2 2
MIRT624669 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT625607 ZNF84 zinc finger protein 84 2 2
MIRT626111 IL23R interleukin 23 receptor 2 2
MIRT628380 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628553 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628671 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628747 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT628776 TMEM154 transmembrane protein 154 2 2
MIRT628918 ZNF430 zinc finger protein 430 2 2
MIRT629174 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629209 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629267 SLC5A8 solute carrier family 5 member 8 2 2
MIRT629498 AS3MT arsenite methyltransferase 2 2
MIRT629665 USP1 ubiquitin specific peptidase 1 2 2
MIRT629760 STK25 serine/threonine kinase 25 2 2
MIRT630899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631105 SLC15A2 solute carrier family 15 member 2 2 2
MIRT631112 ATCAY ATCAY, caytaxin 2 2
MIRT631450 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT631505 FFAR4 free fatty acid receptor 4 2 2
MIRT631580 ITGAL integrin subunit alpha L 2 2
MIRT631836 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT632342 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633214 ZNF584 zinc finger protein 584 2 2
MIRT633223 ZNF43 zinc finger protein 43 2 2
MIRT633480 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633511 LRRC27 leucine rich repeat containing 27 2 2
MIRT633615 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT633652 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633677 ZNF576 zinc finger protein 576 2 2
MIRT634196 TMOD2 tropomodulin 2 2 4
MIRT634388 PLSCR1 phospholipid scramblase 1 2 2
MIRT635817 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635962 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636114 YPEL1 yippee like 1 2 2
MIRT636164 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636768 CLUAP1 clusterin associated protein 1 2 2
MIRT637092 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637316 FAM9B family with sequence similarity 9 member B 2 2
MIRT637540 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637628 ZNF431 zinc finger protein 431 2 2
MIRT637826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637945 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637968 IRF1 interferon regulatory factor 1 2 2
MIRT638321 RNF11 ring finger protein 11 2 2
MIRT638386 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT639244 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT642608 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642793 SLC1A5 solute carrier family 1 member 5 2 2
MIRT643847 LACTB lactamase beta 2 4
MIRT644705 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT645148 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT646671 CCDC69 coiled-coil domain containing 69 2 2
MIRT647780 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648554 WDR92 WD repeat domain 92 2 2
MIRT648990 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT649099 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT650141 ZNF426 zinc finger protein 426 2 2
MIRT650791 GSR glutathione-disulfide reductase 2 2
MIRT654967 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655099 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT655516 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656289 METTL14 methyltransferase like 14 2 2
MIRT656497 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657074 JPH2 junctophilin 2 2 2
MIRT657314 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657419 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT659032 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659535 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661532 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT662029 FUT2 fucosyltransferase 2 2 2
MIRT663206 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663357 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663557 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663650 POLM DNA polymerase mu 2 2
MIRT663694 ABHD17B abhydrolase domain containing 17B 2 2
MIRT664370 CYB5A cytochrome b5 type A 2 2
MIRT664783 LIAS lipoic acid synthetase 2 4
MIRT665561 TXNL1 thioredoxin like 1 2 2
MIRT665950 TAOK1 TAO kinase 1 2 2
MIRT667338 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT667804 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT668804 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669470 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT669599 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669806 STOML1 stomatin like 1 2 2
MIRT669944 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670292 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670381 EMP2 epithelial membrane protein 2 2 2
MIRT670481 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670531 KIF1C kinesin family member 1C 2 4
MIRT670565 GLTP glycolipid transfer protein 2 2
MIRT670603 NPHP1 nephrocystin 1 2 2
MIRT670880 CYTIP cytohesin 1 interacting protein 2 2
MIRT670931 LIPG lipase G, endothelial type 2 2
MIRT671261 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671794 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT671897 GBP4 guanylate binding protein 4 2 2
MIRT672000 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672074 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT672319 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672853 C22orf29 retrotransposon Gag like 10 2 2
MIRT673395 WNT7B Wnt family member 7B 2 2
MIRT673537 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674285 ZNF724P zinc finger protein 724 2 2
MIRT674494 TIRAP TIR domain containing adaptor protein 2 2
MIRT675460 NUBPL nucleotide binding protein like 2 2
MIRT675569 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT676068 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676254 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676377 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676758 SNX2 sorting nexin 2 2 2
MIRT676773 NPHS1 NPHS1, nephrin 2 2
MIRT676874 ENSA endosulfine alpha 2 2
MIRT676918 KLHDC8A kelch domain containing 8A 2 2
MIRT676944 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676957 HFE hemochromatosis 2 2
MIRT676967 RNF19B ring finger protein 19B 2 2
MIRT676972 ZNF708 zinc finger protein 708 2 2
MIRT677042 ZNF34 zinc finger protein 34 2 2
MIRT677070 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677093 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677134 P2RX7 purinergic receptor P2X 7 2 2
MIRT677179 ZNF786 zinc finger protein 786 2 2
MIRT677228 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677320 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677455 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677809 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677937 ZNF519 zinc finger protein 519 2 2
MIRT678063 UBN2 ubinuclein 2 2 4
MIRT678072 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678252 FXN frataxin 2 2
MIRT678315 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678367 XIAP X-linked inhibitor of apoptosis 2 4
MIRT678372 RNF115 ring finger protein 115 2 2
MIRT678410 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678518 ZNF347 zinc finger protein 347 2 2
MIRT678566 CDK4 cyclin dependent kinase 4 2 2
MIRT678580 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678820 PDE6A phosphodiesterase 6A 2 2
MIRT678917 XPOT exportin for tRNA 2 2
MIRT679217 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679437 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT679595 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679755 TLR6 toll like receptor 6 2 2
MIRT679800 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT680057 CD96 CD96 molecule 2 2
MIRT680116 CCDC30 coiled-coil domain containing 30 2 4
MIRT680181 ZNF554 zinc finger protein 554 2 2
MIRT680439 WDR12 WD repeat domain 12 2 2
MIRT680789 ZNF578 zinc finger protein 578 2 2
MIRT692464 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT702952 HIP1 huntingtin interacting protein 1 2 2
MIRT706016 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706032 F2R coagulation factor II thrombin receptor 2 2
MIRT706135 MTRNR2L10 MT-RNR2-like 10 2 2
MIRT706394 HAS2 hyaluronan synthase 2 2 2
MIRT713293 DCP2 decapping mRNA 2 2 2
MIRT716583 BRAP BRCA1 associated protein 2 2
MIRT720433 C19orf47 chromosome 19 open reading frame 47 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-640 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer tissue and cell line (SKOV3)
hsa-miR-640 Cetuximab resistant High Colon Cancer cell line
hsa-miR-640 Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-640 Sorafenib 216239 NSC747971 approved sensitive Low Clear Cell Renal Cell Carcinoma cell line (786-O)
hsa-mir-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-640 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-640 Tamoxifen 2733525 NSC180973 approved sensitive cell line (TamR8)
hsa-miR-640 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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