pre-miRNA Information
pre-miRNA hsa-mir-3622a   
Genomic Coordinates chr8: 27701677 - 27701759
Description Homo sapiens miR-3622a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3622a-5p
Sequence 14| CAGGCACGGGAGCUCAGGUGAG |35
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 8 + 27701691 29233923 MiREDiBase
A-to-I 6 8 + 27701695 29233923 MiREDiBase
A-to-I 16 8 + 27701705 28550310, 29233923 MiREDiBase
A-to-I 21 8 + 27701710 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs551845360 1 dbSNP
rs946438979 3 dbSNP
rs1044808718 7 dbSNP
rs66683138 8 dbSNP
rs1157333896 10 dbSNP
rs1439657384 12 dbSNP
rs530939348 17 dbSNP
rs1232922758 20 dbSNP
rs1448152954 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol DPP9   
Synonyms DP9, DPLP9, DPRP-2, DPRP2
Description dipeptidyl peptidase 9
Transcript NM_139159   
Expression
Putative miRNA Targets on DPP9
3'UTR of DPP9
(miRNA target sites are highlighted)
>DPP9|NM_139159|3'UTR
   1 GCCTGCCCACCGGGAGCCGCCACATCACAGCACAAGTGGCTGCAGCCTCCGCGGGGAACCAGGCGGGAGGGACTGAGTGG
  81 CCCGCGGGCCCCAGTGAGGCACTTTGTCCCGCCCAGCGCTGGCCAGCCCCGAGGAGCCGCTGCCTTCACCGCCCCGACGC
 161 CTTTTATCCTTTTTTAAACGCTCTTGGGTTTTATGTCCGCTGCTTCTTGGTTGCCGAGACAGAGAGATGGTGGTCTCGGG
 241 CCAGCCCCTCCTCTCCCCGCCTTCTGGGAGGAGGAGGTCACACGCTGATGGGCACTGGAGAGGCCAGAAGAGACTCAGAG
 321 GAGCGGGCTGCCTTCCGCCTGGGGCTCCCTGTGACCTCTCAGTCCCCTGGCCCGGCCAGCCACCGTCCCCAGCACCCAAG
 401 CATGCAATTGCCTGTCCCCCCCGGCCAGCCTCCCCAACTTGATGTTTGTGTTTTGTTTGGGGGGATATTTTTCATAATTA
 481 TTTAAAAGACAGGCCGGGCGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACCTGAG
 561 GTTGGGAGTTCAAGACCAGCCTGGCCAACATGGGGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGT
 641 GGCGCGTGCCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGGTTGCGGTGA
 721 GCCAAGATCGCACCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCTGTCTCAAAATAAATAAAAAATAAAAGACAG
 801 AAAGCAAGGGGTGCCTAAATCTAGACTTGGGGTCCACACCGGGCAGCGGGGTTGCAACCCAGCACCTGGTAGGCTCCATT
 881 TCTTCCCAAGCCCGAGCAGAGGGTCATGCGGGCCCCACAGGAGAAGCGGCCAGGGCCCGCGGGGGGCACCACCTGTGGAC
 961 AGCCCTCCTGTCCCCAAGCTTTCAGGCAGGCACTGAAACGCACCGAACTTCCACGCTCTGCTGGTCAGTGGCGGCTGTCC
1041 CCTCCCCAGCCCAGCCGCCCAGCCACATGTGTCTGCCTGACCCGTACACACCAGGGGTTCCGGGGTTGGGAGCTGAACCA
1121 TCCCCACCTCAGGGTTATATTTCCCTCTCCCCTTCCCTCCCCGCCAAGAGCTCTGCCAGGGGCGGGCAAAAAAAAAAGTA
1201 AAAAGAAAAGAAAAAAAAAAAAAAGAAACAAACCACCTCTACATATTATGGAAAGAAAATATTTTTGTCGATTCTTATTC
1281 TTTTATAATTATGCGTGGAAGAAGTAGACACATTAAACGATTCCAGTTGGAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaguggACUCGA--GGGCACGGAc 5'
                || | |  | ||||||| 
Target 5' gccgggTGTGGTGGCGCGTGCCTa 3'
629 - 652 146.00 -17.80
2
miRNA  3' gaGUGGA-CUCGA-GGGCAC-GGAc 5'
            |:||| |:||| ||:||| ||| 
Target 5' tcCGCCTGGGGCTCCCTGTGACCTc 3'
334 - 358 128.00 -28.10
3
miRNA  3' gaguGGACUCGAGGGC-ACGGAc 5'
              || |||   ||| ||||| 
Target 5' cagcCCCGAGGAGCCGCTGCCTt 3'
124 - 146 126.00 -15.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31583955 19 COSMIC
COSN30651588 40 COSMIC
COSN26601903 51 COSMIC
COSN30729311 62 COSMIC
COSN30752172 78 COSMIC
COSN31540369 87 COSMIC
COSN30537243 117 COSMIC
COSN17665474 183 COSMIC
COSN31590276 204 COSMIC
COSN25677398 259 COSMIC
COSN32069220 277 COSMIC
COSN20988090 577 COSMIC
COSN6145512 734 COSMIC
COSN7446876 987 COSMIC
COSN30538337 1082 COSMIC
COSN17473552 1158 COSMIC
COSN31961486 1161 COSMIC
COSN31527978 1201 COSMIC
COSN26499144 1205 COSMIC
COSN28680782 1210 COSMIC
COSN30166937 1222 COSMIC
COSN24736528 1225 COSMIC
COSN31535770 1304 COSMIC
COSN31611134 1327 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs761741184 7 dbSNP
rs776977637 9 dbSNP
rs527525898 11 dbSNP
rs760855633 13 dbSNP
rs1179256313 14 dbSNP
rs1400462453 16 dbSNP
rs899048555 17 dbSNP
rs1332805021 18 dbSNP
rs1467840875 19 dbSNP
rs1036294136 21 dbSNP
rs561709451 22 dbSNP
rs1435334229 23 dbSNP
rs746390008 25 dbSNP
rs1474975271 28 dbSNP
rs771352980 31 dbSNP
rs774073442 36 dbSNP
rs1240042271 44 dbSNP
rs1201859396 46 dbSNP
rs748912279 48 dbSNP
rs777534661 49 dbSNP
rs1354979244 50 dbSNP
rs1046862085 51 dbSNP
rs1286027985 53 dbSNP
rs984430263 56 dbSNP
rs948155860 58 dbSNP
rs549488775 59 dbSNP
rs1294708772 64 dbSNP
rs1359334819 65 dbSNP
rs916705481 67 dbSNP
rs1213419234 69 dbSNP
rs1295510499 70 dbSNP
rs1308561578 71 dbSNP
rs529381667 72 dbSNP
rs1278699684 73 dbSNP
rs1485532513 74 dbSNP
rs1211951373 76 dbSNP
rs1242780022 82 dbSNP
rs1053845663 84 dbSNP
rs936851532 85 dbSNP
rs1020147034 86 dbSNP
rs1010499423 88 dbSNP
rs1437941685 94 dbSNP
rs1386849348 98 dbSNP
rs924169581 100 dbSNP
rs1435099323 104 dbSNP
rs978347008 106 dbSNP
rs1314347216 107 dbSNP
rs1429453390 129 dbSNP
rs893198283 129 dbSNP
rs190003658 130 dbSNP
rs1405559737 134 dbSNP
rs911551990 135 dbSNP
rs1231314410 138 dbSNP
rs1392515812 139 dbSNP
rs543413923 150 dbSNP
rs1347689426 155 dbSNP
rs1235404014 156 dbSNP
rs879920098 159 dbSNP
rs1445451953 167 dbSNP
rs1358438036 170 dbSNP
rs1215178703 176 dbSNP
rs1160937277 180 dbSNP
rs577574909 182 dbSNP
rs1191740187 183 dbSNP
rs987580940 183 dbSNP
rs1454553759 186 dbSNP
rs1175241160 191 dbSNP
rs1405374069 198 dbSNP
rs905907448 199 dbSNP
rs1346526435 200 dbSNP
rs564479403 206 dbSNP
rs746625987 209 dbSNP
rs1390255890 210 dbSNP
rs950325207 215 dbSNP
rs953068827 220 dbSNP
rs1442134759 241 dbSNP
rs1447606276 245 dbSNP
rs1028754345 252 dbSNP
rs1223469780 255 dbSNP
rs1348954849 255 dbSNP
rs1199396320 262 dbSNP
rs761210964 264 dbSNP
rs994644218 264 dbSNP
rs963225817 270 dbSNP
rs1211827299 275 dbSNP
rs1252333115 277 dbSNP
rs139093540 279 dbSNP
rs1195401909 280 dbSNP
rs1015195095 284 dbSNP
rs1231007331 289 dbSNP
rs1469437942 291 dbSNP
rs1158847093 298 dbSNP
rs1004790701 299 dbSNP
rs775328112 301 dbSNP
rs1394421430 302 dbSNP
rs1292226844 306 dbSNP
rs1462470624 314 dbSNP
rs1208295676 317 dbSNP
rs572629348 320 dbSNP
rs908921002 321 dbSNP
rs1441914025 323 dbSNP
rs984545869 336 dbSNP
rs1046391945 337 dbSNP
rs1012206887 344 dbSNP
rs895203536 348 dbSNP
rs1211639920 356 dbSNP
rs1270785426 357 dbSNP
rs1053814366 362 dbSNP
rs1437033783 362 dbSNP
rs936779398 363 dbSNP
rs1231232842 366 dbSNP
rs924117900 367 dbSNP
rs1253561070 370 dbSNP
rs1269973196 374 dbSNP
rs921623523 377 dbSNP
rs555666570 384 dbSNP
rs965962397 385 dbSNP
rs1042982318 387 dbSNP
rs944299171 389 dbSNP
rs1165567896 394 dbSNP
rs1394891943 396 dbSNP
rs1020640604 401 dbSNP
rs912808225 402 dbSNP
rs1372774952 405 dbSNP
rs1423637666 413 dbSNP
rs1370581174 415 dbSNP
rs987119683 416 dbSNP
rs931648795 420 dbSNP
rs866408441 421 dbSNP
rs542375760 422 dbSNP
rs1001613215 423 dbSNP
rs905853581 426 dbSNP
rs1244795183 431 dbSNP
rs1197479151 432 dbSNP
rs973131645 434 dbSNP
rs555566618 435 dbSNP
rs10425839 436 dbSNP
rs1190311161 437 dbSNP
rs778845932 443 dbSNP
rs1371875405 444 dbSNP
rs1475403540 445 dbSNP
rs556250852 454 dbSNP
rs536346998 455 dbSNP
rs983730853 460 dbSNP
rs749035169 461 dbSNP
rs1025321640 462 dbSNP
rs1312516056 464 dbSNP
rs1272850980 465 dbSNP
rs1376222437 474 dbSNP
rs1397895440 484 dbSNP
rs941502805 485 dbSNP
rs1220321202 488 dbSNP
rs1228110210 493 dbSNP
rs1299725870 495 dbSNP
rs910082665 496 dbSNP
rs1233219099 497 dbSNP
rs1347521287 499 dbSNP
rs1484001909 500 dbSNP
rs1012175807 501 dbSNP
rs895130118 502 dbSNP
rs1260482682 512 dbSNP
rs547901519 517 dbSNP
rs1000895893 523 dbSNP
rs1403925037 527 dbSNP
rs1392513228 530 dbSNP
rs1452970467 538 dbSNP
rs1173363196 539 dbSNP
rs1350767527 539 dbSNP
rs1309305019 549 dbSNP
rs1051965653 551 dbSNP
rs902635105 556 dbSNP
rs1157009903 568 dbSNP
rs1042519963 579 dbSNP
rs1382834475 580 dbSNP
rs921695275 585 dbSNP
rs944210272 586 dbSNP
rs1368607106 587 dbSNP
rs975723881 597 dbSNP
rs1422775283 599 dbSNP
rs1175493971 600 dbSNP
rs891349132 602 dbSNP
rs1050022954 603 dbSNP
rs1313711013 611 dbSNP
rs966104265 616 dbSNP
rs913113968 617 dbSNP
rs1259770550 620 dbSNP
rs1350785016 623 dbSNP
rs866497800 627 dbSNP
rs989169045 632 dbSNP
rs1250480046 634 dbSNP
rs1467491498 641 dbSNP
rs921585696 643 dbSNP
rs973100568 644 dbSNP
rs1184628664 645 dbSNP
rs941758482 646 dbSNP
rs1161409562 647 dbSNP
rs1392350066 648 dbSNP
rs1232401755 649 dbSNP
rs907621025 657 dbSNP
rs1032829353 659 dbSNP
rs1389406013 667 dbSNP
rs1001560820 670 dbSNP
rs746089253 678 dbSNP
rs970982838 680 dbSNP
rs1223343680 686 dbSNP
rs1024871825 687 dbSNP
rs1333482902 689 dbSNP
rs1213689908 697 dbSNP
rs1266529255 699 dbSNP
rs1489678656 700 dbSNP
rs990682636 701 dbSNP
rs1289763920 703 dbSNP
rs185400223 709 dbSNP
rs1032300272 710 dbSNP
rs57504839 711 dbSNP
rs111565721 715 dbSNP
rs10412160 723 dbSNP
rs1351483304 725 dbSNP
rs531356739 726 dbSNP
rs1436070473 728 dbSNP
rs891270070 729 dbSNP
rs550076909 745 dbSNP
rs932882413 748 dbSNP
rs898789019 759 dbSNP
rs1354332427 760 dbSNP
rs569824041 761 dbSNP
rs1233299611 762 dbSNP
rs1037333097 763 dbSNP
rs1202890429 771 dbSNP
rs1417576950 771 dbSNP
rs1251147605 775 dbSNP
rs1483585125 784 dbSNP
rs941700986 784 dbSNP
rs1255600765 788 dbSNP
rs1182484849 791 dbSNP
rs1485390382 791 dbSNP
rs1415906091 796 dbSNP
rs1407317709 802 dbSNP
rs944381701 808 dbSNP
rs1390627756 810 dbSNP
rs1431382365 811 dbSNP
rs912927067 813 dbSNP
rs190226553 815 dbSNP
rs533201561 821 dbSNP
rs935945716 822 dbSNP
rs925884579 830 dbSNP
rs34031579 833 dbSNP
rs1047956845 839 dbSNP
rs755943449 840 dbSNP
rs1203593563 847 dbSNP
rs374579371 848 dbSNP
rs1230987053 850 dbSNP
rs990651473 883 dbSNP
rs959241241 889 dbSNP
rs1347367482 891 dbSNP
rs925209208 893 dbSNP
rs561405638 894 dbSNP
rs1016041519 899 dbSNP
rs867359271 907 dbSNP
rs979371847 909 dbSNP
rs967131590 910 dbSNP
rs1020978099 912 dbSNP
rs541745181 919 dbSNP
rs1376357198 920 dbSNP
rs1028583077 921 dbSNP
rs955518856 927 dbSNP
rs1320482682 928 dbSNP
rs1366511495 931 dbSNP
rs1437757210 932 dbSNP
rs1028493314 938 dbSNP
rs1040121126 940 dbSNP
rs1435763257 941 dbSNP
rs997021054 945 dbSNP
rs1367027939 947 dbSNP
rs1208109523 953 dbSNP
rs1268726726 955 dbSNP
rs898716873 977 dbSNP
rs1318346642 987 dbSNP
rs187384129 989 dbSNP
rs1038647855 993 dbSNP
rs1191646349 994 dbSNP
rs749319297 999 dbSNP
rs886088406 1000 dbSNP
rs1047422098 1004 dbSNP
rs562381089 1005 dbSNP
rs1407091207 1006 dbSNP
rs949153412 1008 dbSNP
rs917667465 1014 dbSNP
rs542063240 1015 dbSNP
rs937858613 1016 dbSNP
rs935698645 1020 dbSNP
rs925177348 1023 dbSNP
rs371154396 1025 dbSNP
rs925830603 1033 dbSNP
rs375074776 1038 dbSNP
rs1185214708 1039 dbSNP
rs201625081 1043 dbSNP
rs1324471028 1048 dbSNP
rs922349211 1048 dbSNP
rs966681259 1050 dbSNP
rs979993248 1053 dbSNP
rs777599585 1056 dbSNP
rs975075168 1057 dbSNP
rs1276833061 1065 dbSNP
rs986820654 1065 dbSNP
rs372576707 1067 dbSNP
rs1331287251 1071 dbSNP
rs556336769 1079 dbSNP
rs1223318563 1081 dbSNP
rs1288986903 1082 dbSNP
rs997002978 1083 dbSNP
rs1223447359 1084 dbSNP
rs1230846872 1090 dbSNP
rs1469355815 1096 dbSNP
rs1182417482 1099 dbSNP
rs1413623273 1101 dbSNP
rs962893165 1102 dbSNP
rs1163414211 1110 dbSNP
rs1390557073 1111 dbSNP
rs1406345764 1120 dbSNP
rs1325885018 1121 dbSNP
rs545891053 1124 dbSNP
rs1004840294 1131 dbSNP
rs942375490 1148 dbSNP
rs1289213375 1149 dbSNP
rs909778540 1154 dbSNP
rs983985804 1158 dbSNP
rs1295119442 1161 dbSNP
rs576947005 1162 dbSNP
rs553500496 1163 dbSNP
rs1482606128 1177 dbSNP
rs1205506589 1179 dbSNP
rs1294303186 1180 dbSNP
rs533750439 1183 dbSNP
rs1438905737 1184 dbSNP
rs1186172902 1185 dbSNP
rs1363765703 1187 dbSNP
rs1473439776 1190 dbSNP
rs1165473731 1191 dbSNP
rs1163057714 1197 dbSNP
rs1308871264 1198 dbSNP
rs951329578 1198 dbSNP
rs952698624 1198 dbSNP
rs1025425139 1199 dbSNP
rs1028571712 1200 dbSNP
rs1392636514 1200 dbSNP
rs1168971822 1203 dbSNP
rs796793447 1205 dbSNP
rs367697882 1210 dbSNP
rs997141933 1210 dbSNP
rs901323768 1214 dbSNP
rs1228777803 1215 dbSNP
rs1276371088 1215 dbSNP
rs773248252 1217 dbSNP
rs1199502935 1220 dbSNP
rs1009750043 1222 dbSNP
rs1020229987 1222 dbSNP
rs1034860141 1225 dbSNP
rs1340071446 1225 dbSNP
rs369204147 1225 dbSNP
rs397822610 1225 dbSNP
rs398059521 1225 dbSNP
rs1172211515 1229 dbSNP
rs72977961 1229 dbSNP
rs1397804508 1230 dbSNP
rs1267518520 1232 dbSNP
rs1052873706 1234 dbSNP
rs887371954 1237 dbSNP
rs1435567548 1240 dbSNP
rs1299609063 1241 dbSNP
rs1047848410 1242 dbSNP
rs1368473480 1244 dbSNP
rs904230204 1247 dbSNP
rs1226645979 1250 dbSNP
rs1013289175 1255 dbSNP
rs1044286224 1269 dbSNP
rs1266809876 1270 dbSNP
rs1303200861 1272 dbSNP
rs1189743035 1274 dbSNP
rs1225553442 1275 dbSNP
rs1431793679 1278 dbSNP
rs1198446224 1280 dbSNP
rs948669837 1283 dbSNP
rs896228318 1294 dbSNP
rs917188925 1295 dbSNP
rs534789838 1305 dbSNP
rs1457741023 1310 dbSNP
rs1410454305 1311 dbSNP
rs146041226 1314 dbSNP
rs1054826234 1318 dbSNP
rs1057346186 1319 dbSNP
rs554808042 1322 dbSNP
rs1332416916 1325 dbSNP
rs937781712 1327 dbSNP
rs537688945 1330 dbSNP
rs903668201 1334 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084040. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep1 HITS-CLIP data was present in GSM1084043. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep2 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaguggacucgagggCACGGAc 5'
                         |||||| 
Target 5' ---------------GUGCCUa 3'
1 - 7
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_139159 | 3UTR | AUAAUCCCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCGCUUGAACCCGGGAGGUGGAGGUUGCGGUGAGCCAAGAUCGCACCAUUGCACUCCAGCCUGGGCAACAAGAGCGAAACUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_139159 | 3UTR | UAUAAUCCCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCGCUUGAACCCGGGAGGUGGAGGUUGCGGUGAGCCAAGAUCGCACCAUUGCACUCCAGCCUGGGCAACAAGAGCGAAACUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_139159 | 3UTR | AUAAUCCCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCGCUUGAACCCGGGAGGUGGAGGUUGCGGUGAGCCAAGAUCGCACCAUUGCACUCCAGCCUGGGCAACAAGAGCGAAACUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_139159 | 3UTR | AUAAUCCCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCGCUUGAACCCGGGAGGUGGAGGUUGCGGUGAGCCAAGAUCGCACCAUUGCACUCCAGCCUGGGCAACAAGAGCGAAACUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084040
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep1
Location of target site ENST00000594671.1 | 3UTR | GUGCCUAUAAUCCCAGCUACUCGGGAGGCUGAGGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084043
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep2
Location of target site ENST00000594671.1 | 3UTR | GUGCCUAUAAUCCCAGCUACUCGGGAGGCUGAGGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA -0.551 0.08 -0.667 0.04 8 Click to see details
THCA -0.551 0.08 -0.667 0.04 8 Click to see details
THCA -0.551 0.08 -0.667 0.04 8 Click to see details
THCA -0.551 0.08 -0.667 0.04 8 Click to see details
THCA -0.551 0.08 -0.667 0.04 8 Click to see details
THCA -0.551 0.08 -0.667 0.04 8 Click to see details
THCA -0.551 0.08 -0.667 0.04 8 Click to see details
61 hsa-miR-3622a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT166678 ZSWIM6 zinc finger SWIM-type containing 6 2 2
MIRT452081 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT457039 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT471975 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474065 LMNB2 lamin B2 2 2
MIRT475862 H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase 2 2
MIRT476191 GOLGA8A golgin A8 family member A 2 2
MIRT476521 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT483046 C15orf52 chromosome 15 open reading frame 52 2 4
MIRT495541 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT495892 CLOCK clock circadian regulator 2 2
MIRT495992 LTBP2 latent transforming growth factor beta binding protein 2 2 2
MIRT496001 EMP1 epithelial membrane protein 1 2 2
MIRT496208 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT496427 ACTRT3 actin related protein T3 2 2
MIRT496438 ZNF704 zinc finger protein 704 2 2
MIRT496473 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT496555 TBX15 T-box 15 2 2
MIRT497202 CECR1 adenosine deaminase 2 2 2
MIRT507632 CREBZF CREB/ATF bZIP transcription factor 2 2
MIRT513377 MGAT4A mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A 2 2
MIRT523460 GOLGA8J golgin A8 family member J 2 2
MIRT523465 GOLGA8I golgin A8 family member I, pseudogene 1 1
MIRT526049 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT533122 YIPF4 Yip1 domain family member 4 2 2
MIRT534183 SLC8A1 solute carrier family 8 member A1 2 2
MIRT556618 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT563361 WHSC1 nuclear receptor binding SET domain protein 2 2 2
MIRT563868 FAM206A family with sequence similarity 206 member A 2 2
MIRT564360 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 2 2
MIRT564661 ZNF449 zinc finger protein 449 2 2
MIRT564805 ZBTB33 zinc finger and BTB domain containing 33 2 2
MIRT564867 ZBED3 zinc finger BED-type containing 3 2 2
MIRT565340 TMEM104 transmembrane protein 104 2 2
MIRT566439 PHF16 jade family PHD finger 3 2 2
MIRT567587 FCHSD2 FCH and double SH3 domains 2 2 2
MIRT569597 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT569700 FMNL3 formin like 3 2 2
MIRT575957 Nanos1 nanos homolog 1 (Drosophila) 2 3
MIRT576516 Slc35e2 solute carrier family 35, member E2 2 2
MIRT608480 RRP36 ribosomal RNA processing 36 2 2
MIRT614335 NANOS1 nanos C2HC-type zinc finger 1 2 3
MIRT630816 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT631708 C1QTNF6 C1q and TNF related 6 2 2
MIRT632369 SRRD SRR1 domain containing 2 2
MIRT633471 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT634478 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 2
MIRT667336 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 2 2
MIRT667654 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 2 2
MIRT671046 SS18 SS18, nBAF chromatin remodeling complex subunit 2 2
MIRT672823 VEZT vezatin, adherens junctions transmembrane protein 2 2
MIRT673049 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT673435 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT676096 DPP9 dipeptidyl peptidase 9 2 2
MIRT678059 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT679783 GOLGA2 golgin A2 2 2
MIRT684219 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT697642 WRN Werner syndrome RecQ like helicase 2 2
MIRT706595 C1RL complement C1r subcomponent like 2 2
MIRT706603 CCS copper chaperone for superoxide dismutase 2 2
MIRT717647 HLX H2.0 like homeobox 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3622a Doxorubicin 31703 NSC123127 approved resistant High Hepatocellular Carcinoma cell line (HepG2)
hsa-mir-3622a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-miR-3622a-5p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-3622a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3622a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3622a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3622a-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3622a-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-3622a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-3622a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3622a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3622a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-3622a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR3)
hsa-miR-3622a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

Error report submission