pre-miRNA Information
pre-miRNA hsa-mir-640   
Genomic Coordinates chr19: 19435063 - 19435158
Synonyms MIRN640, hsa-mir-640, MIR640
Description Homo sapiens miR-640 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-640
Sequence 61| AUGAUCCAGGAACCUGCCUCU |81
Evidence Experimental
Experiments RT-PCR
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30153378 1 COSMIC
COSN23015356 12 COSMIC
COSN30513185 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs111726405 1 dbSNP
rs765622881 2 dbSNP
rs1249744889 6 dbSNP
rs752995186 12 dbSNP
rs758746736 13 dbSNP
rs918887970 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KLHDC8A   
Synonyms -
Description kelch domain containing 8A
Transcript NM_018203   
Expression
Putative miRNA Targets on KLHDC8A
3'UTR of KLHDC8A
(miRNA target sites are highlighted)
>KLHDC8A|NM_018203|3'UTR
   1 CTGTCTCTGGGCTCAGTACCTTTGCCCTGGACCATATCACTTCACTCTTAACATGAGGAATGATCTTGTCCAAGCAGTCG
  81 GGGCTACTTCCAAGAATGTCAGCTCCTGTTAGCAACCAGTGGAGTCTGGCCTTGGGGCTCTAAGTTGACCTCTCTATAGC
 161 TCCAAATCCTACCAATCTCAGAAAACTGTAAGAGGCACAGATGACTCCACCAGCTGCAGAGCTGACTCTGAAGAGAGTCT
 241 TCACTTACTGCACAGGCAAAGAAAGGCACAGGAATATTTCCTACCTCTCCCTCCTGTGAGTCCCACCTCCCCCCACCCCC
 321 ATCTCCAGGAGGCAGGTAGAGCAGTTCTGACCGAGAGGATAGACTGCTGTTGCTGTCTTTCCCCAGCTCTGAACTAGTTT
 401 TAAGGTAGCTTAGGATGAAAAATGGAGAATGATTGGGGGTTCCAAACCACTTTCTTCTCCCTTGGCTTATATCTCTTCAC
 481 CATTTGGTGGTCAACTGTGGGCCTACCCTGGACCTCATCTACTCAGCGAGAATTGGACATGAAGCTAGAGGCAGCTGCCT
 561 TGGAAGGGAAGTCAGGCTCACTTGGACAGCCCAGGCCATGGCAGGAAGAATCCCTTCCTCTTGGGGTCCTTGATGGGCAT
 641 GTGTGATGGGGAAGGAGCAGTCTCCCAGCCCTGGGTCTGCTCCCCACATCTCTCCTAATTCCACTTCACCTTTTGCCACC
 721 CCCTCCCCACCAGAGGCCTAGCCCTTTTGTCACCGAAGGCCCCCAGAGTGTTTCTGTGTGAAACCCTCTCATTTACACTG
 801 TGGCATCAAAATCCACAAAAGATGGATTAATTGCACTCTGGTTAATAGCAGCAGCACAATGATTAAAATCTATATTCCTA
 881 TCTTCTCTAGCACCCTGGTGTGGGGATGGGGCGGAAGGGTGTCTTGAGGGGCAGGGAGGACCCCATAAAACAATCCCTCC
 961 TGCATTCTCAGGCTAAATAGGGCCCCCAGTGACTACCTGTTCTTGGCTGTCCCCTCTGAAGAGCTCTGCCTTCTCACAGC
1041 CACCACCAGTTGCCCCACTCCCAGGAAAACAGCACATGTTCTTCTTCTCCTGCCTTGAGACTGCGTGTTAGTCTTCCATT
1121 CATAACTCATCAGCAGCTCAGTCCTTCTTATGTCTAGTCTCAGTTCATTCAGCCAAAGCTCATTTTTGTCCTATCCAAAG
1201 TAGAAAGGGTTCTTTTAGAAAACTTGAAGAATGTGCCTCCTCTTAGCATCTGTTTCTGACTCCCAGTTATTTTTAAAATA
1281 AATGATGAATAAAATGCCTGCCCTGAAGGGTTCTGGAGGAGTCAGGTATCACTC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucuccguccaaggACCUAGUa 5'
                       |||||:| 
Target 5' aatccacaaaagaTGGATTAa 3'
810 - 830 124.00 -7.00
2
miRNA  3' ucucCGUCCAA---GGACCUAGUa 5'
              |:|  ||   |||||| || 
Target 5' ctcaGTACCTTTGCCCTGGACCAt 3'
12 - 35 121.00 -11.00
3
miRNA  3' ucuccGUCCAAGGACCUAGua 5'
               |||   |||||:||  
Target 5' tctccCAG--CCCTGGGTCtg 3'
661 - 679 116.00 -14.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN22069160 4 COSMIC
COSN31573920 12 COSMIC
COSN31608388 20 COSMIC
COSN31497886 29 COSMIC
COSN31574665 58 COSMIC
COSN31598805 62 COSMIC
COSN31560074 124 COSMIC
COSN31575700 135 COSMIC
COSN31598180 186 COSMIC
COSN22748217 200 COSMIC
COSN9057337 643 COSMIC
COSN31602708 779 COSMIC
COSN28201774 786 COSMIC
COSN19660211 843 COSMIC
COSN30158205 870 COSMIC
COSN16892163 912 COSMIC
COSN9057336 917 COSMIC
COSN18934217 1047 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1283598999 14 dbSNP
rs754046183 27 dbSNP
rs1324222734 34 dbSNP
rs200376413 36 dbSNP
rs1383291804 37 dbSNP
rs760757964 40 dbSNP
rs751434533 41 dbSNP
rs764050985 42 dbSNP
rs1162132976 53 dbSNP
rs1461880944 57 dbSNP
rs1013276070 58 dbSNP
rs1005850569 61 dbSNP
rs1382698159 65 dbSNP
rs1381397526 67 dbSNP
rs535656899 77 dbSNP
rs566684977 79 dbSNP
rs186014513 80 dbSNP
rs72747066 82 dbSNP
rs1000501874 115 dbSNP
rs1233995410 120 dbSNP
rs571033984 121 dbSNP
rs1485197138 134 dbSNP
rs761662116 137 dbSNP
rs998581641 138 dbSNP
rs1489063276 142 dbSNP
rs902829371 154 dbSNP
rs1372646042 163 dbSNP
rs1185424091 166 dbSNP
rs1042690100 175 dbSNP
rs1475209795 176 dbSNP
rs1166502593 185 dbSNP
rs1361940356 191 dbSNP
rs148548008 195 dbSNP
rs1289202874 206 dbSNP
rs1489199075 207 dbSNP
rs1311232417 209 dbSNP
rs530776193 210 dbSNP
rs1415433462 240 dbSNP
rs1314969558 248 dbSNP
rs774071042 249 dbSNP
rs1315622849 259 dbSNP
rs1239044226 266 dbSNP
rs144790699 268 dbSNP
rs1356227317 273 dbSNP
rs1051150851 287 dbSNP
rs933467810 288 dbSNP
rs763963286 289 dbSNP
rs1050941512 290 dbSNP
rs1484593330 297 dbSNP
rs1183069316 302 dbSNP
rs1247859558 306 dbSNP
rs933370480 307 dbSNP
rs1159819326 311 dbSNP
rs1307920746 312 dbSNP
rs181361794 313 dbSNP
rs574105538 314 dbSNP
rs909322243 316 dbSNP
rs1338345822 332 dbSNP
rs1267836975 337 dbSNP
rs536942188 347 dbSNP
rs984808149 352 dbSNP
rs529107455 353 dbSNP
rs1280125442 354 dbSNP
rs909426488 367 dbSNP
rs969830671 372 dbSNP
rs1414527674 381 dbSNP
rs951030221 381 dbSNP
rs1177280374 382 dbSNP
rs190124172 385 dbSNP
rs1192751329 386 dbSNP
rs918061405 389 dbSNP
rs1428269712 404 dbSNP
rs10900482 425 dbSNP
rs533294011 433 dbSNP
rs959086828 438 dbSNP
rs1033398284 449 dbSNP
rs1035502444 451 dbSNP
rs564193458 456 dbSNP
rs866309986 459 dbSNP
rs1439385980 462 dbSNP
rs544218275 466 dbSNP
rs1396061267 500 dbSNP
rs1221311000 506 dbSNP
rs1000450132 511 dbSNP
rs998675041 516 dbSNP
rs968117904 520 dbSNP
rs1306594013 524 dbSNP
rs1204551173 528 dbSNP
rs915679820 533 dbSNP
rs1213052236 545 dbSNP
rs1021831290 548 dbSNP
rs1020654295 550 dbSNP
rs1478863725 551 dbSNP
rs1011233943 563 dbSNP
rs1417570612 566 dbSNP
rs1428190397 570 dbSNP
rs1009883143 576 dbSNP
rs1402637478 578 dbSNP
rs1460328677 579 dbSNP
rs1325757885 580 dbSNP
rs891066250 594 dbSNP
rs10900481 602 dbSNP
rs1187201810 614 dbSNP
rs1287510038 615 dbSNP
rs1050658137 626 dbSNP
rs1214839500 628 dbSNP
rs1279524497 630 dbSNP
rs933583232 636 dbSNP
rs901981329 639 dbSNP
rs900553361 640 dbSNP
rs1270483769 641 dbSNP
rs1036517342 645 dbSNP
rs940881052 651 dbSNP
rs1318059746 656 dbSNP
rs186153425 657 dbSNP
rs985289829 665 dbSNP
rs1426069190 666 dbSNP
rs541566364 677 dbSNP
rs1474230975 684 dbSNP
rs1233283942 689 dbSNP
rs1164345289 696 dbSNP
rs1354120357 704 dbSNP
rs35897574 711 dbSNP
rs1286263439 716 dbSNP
rs571267041 719 dbSNP
rs572601477 720 dbSNP
rs774654865 722 dbSNP
rs1401003388 726 dbSNP
rs553558320 728 dbSNP
rs1047747473 730 dbSNP
rs1353211461 739 dbSNP
rs929524860 739 dbSNP
rs918183327 741 dbSNP
rs916587421 744 dbSNP
rs1449246888 753 dbSNP
rs1358337708 754 dbSNP
rs992252951 755 dbSNP
rs959537183 760 dbSNP
rs1335359416 764 dbSNP
rs1317234245 765 dbSNP
rs79217841 768 dbSNP
rs1265562684 787 dbSNP
rs1484827116 795 dbSNP
rs959935498 825 dbSNP
rs1467232016 834 dbSNP
rs979586068 835 dbSNP
rs35892540 842 dbSNP
rs13375059 843 dbSNP
rs772911045 847 dbSNP
rs1474057898 853 dbSNP
rs1021020113 854 dbSNP
rs1160846073 857 dbSNP
rs1420649084 857 dbSNP
rs748517856 857 dbSNP
rs777194083 859 dbSNP
rs181468555 870 dbSNP
rs1341803226 879 dbSNP
rs1439414838 880 dbSNP
rs1278817910 888 dbSNP
rs1021339857 895 dbSNP
rs1011742795 897 dbSNP
rs1241991111 898 dbSNP
rs1459754639 899 dbSNP
rs1277985260 900 dbSNP
rs538184092 905 dbSNP
rs1345956984 906 dbSNP
rs1210520170 909 dbSNP
rs1279617937 911 dbSNP
rs1415899764 912 dbSNP
rs888761949 913 dbSNP
rs1469473337 916 dbSNP
rs763082863 918 dbSNP
rs994771688 920 dbSNP
rs899663886 929 dbSNP
rs1016811698 931 dbSNP
rs1029088085 938 dbSNP
rs997210919 939 dbSNP
rs1393725953 940 dbSNP
rs1453406105 941 dbSNP
rs902095755 942 dbSNP
rs1172743775 956 dbSNP
rs1006703761 959 dbSNP
rs537443627 968 dbSNP
rs1407677887 969 dbSNP
rs1327633225 972 dbSNP
rs1251764345 977 dbSNP
rs1341746813 978 dbSNP
rs1300978630 986 dbSNP
rs1370053847 993 dbSNP
rs1211296985 997 dbSNP
rs1233708742 1009 dbSNP
rs1036651340 1011 dbSNP
rs887887176 1023 dbSNP
rs140204908 1027 dbSNP
rs1292685164 1034 dbSNP
rs1229220845 1046 dbSNP
rs1350473821 1048 dbSNP
rs1194128128 1065 dbSNP
rs1257544204 1066 dbSNP
rs548590991 1075 dbSNP
rs10900480 1078 dbSNP
rs896704980 1081 dbSNP
rs1251694500 1089 dbSNP
rs796968234 1089 dbSNP
rs1377942422 1103 dbSNP
rs1200065285 1107 dbSNP
rs549192693 1108 dbSNP
rs948149456 1111 dbSNP
rs199843264 1122 dbSNP
rs41315559 1128 dbSNP
rs1474253088 1130 dbSNP
rs777937300 1135 dbSNP
rs142797901 1136 dbSNP
rs529058961 1163 dbSNP
rs564410277 1173 dbSNP
rs1166775399 1178 dbSNP
rs1438841176 1182 dbSNP
rs371543099 1192 dbSNP
rs926782812 1193 dbSNP
rs1323732418 1194 dbSNP
rs1393681750 1207 dbSNP
rs544138370 1208 dbSNP
rs979645942 1221 dbSNP
rs946432321 1225 dbSNP
rs1351514365 1234 dbSNP
rs530705817 1237 dbSNP
rs758793762 1239 dbSNP
rs916700063 1242 dbSNP
rs1277626473 1246 dbSNP
rs1318625667 1248 dbSNP
rs74140883 1264 dbSNP
rs1271782981 1265 dbSNP
rs1399883301 1267 dbSNP
rs1405603417 1268 dbSNP
rs1210790560 1284 dbSNP
rs939393963 1286 dbSNP
rs928546610 1310 dbSNP
rs1192101262 1311 dbSNP
rs541402548 1313 dbSNP
rs988177427 1321 dbSNP
rs955026288 1328 dbSNP
rs779157839 1332 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084043. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep2 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucUCCGUCCAAGGACCUAGUa 5'
            |||||||    ||||||| 
Target 5' ugAGGCAGG----UGGAUCAc 3'
2 - 18
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084043
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep2
Location of target site ENST00000367155.3 | 3UTR | CUGAGGCAGGUGGAUCACCUGAGGUCAGGAGUUCGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE21687 Ependynoma primary tumors -0.223 3.8e-2 -0.261 1.9e-2 64 Click to see details
GSE38226 Liver fibrosis 0.368 5.0e-2 0.111 3.2e-1 21 Click to see details
GSE17498 Multiple myeloma 0.26 5.3e-2 0.055 3.7e-1 40 Click to see details
GSE19536 Breast cancer 0.125 1.1e-1 0.264 4.0e-3 100 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.229 1.4e-1 -0.150 2.4e-1 25 Click to see details
GSE28544 Breast cancer -0.218 1.5e-1 -0.029 4.5e-1 24 Click to see details
GSE19350 CNS germ cell tumors 0.291 1.8e-1 0.322 1.5e-1 12 Click to see details
GSE28260 Renal cortex and medulla -0.247 2.1e-1 -0.155 3.1e-1 13 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.17 2.1e-1 0.223 1.4e-1 25 Click to see details
GSE27834 Pluripotent stem cells 0.206 2.2e-1 0.188 2.4e-1 16 Click to see details
GSE42095 Differentiated embryonic stem cells 0.167 2.2e-1 0.000 5.0e-1 23 Click to see details
GSE21849 B cell lymphoma 0.147 2.2e-1 0.382 2.0e-2 29 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.163 2.5e-1 -0.116 3.1e-1 20 Click to see details
GSE19783 ER- ER- breast cancer 0.074 2.6e-1 0.229 2.1e-2 79 Click to see details
GSE17306 Multiple myeloma -0.088 2.7e-1 -0.039 4.0e-1 49 Click to see details
GSE32688 Pancreatic cancer 0.1 2.9e-1 0.298 4.9e-2 32 Click to see details
GSE26953 Aortic valvular endothelial cells 0.115 3.0e-1 0.054 4.0e-1 24 Click to see details
GSE14794 Lymphoblastoid cells 0.049 3.2e-1 0.030 3.9e-1 90 Click to see details
GSE19783 ER+ ER+ breast cancer 0.005 4.9e-1 0.096 3.4e-1 20 Click to see details
GSE19783 ER+ ER+ breast cancer 0.005 4.9e-1 0.096 3.4e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
194 hsa-miR-640 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT097121 TNPO1 transportin 1 2 2
MIRT115090 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT204603 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204634 MOB4 MOB family member 4, phocein 2 8
MIRT344451 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT405772 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT445876 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT497418 FAM46A family with sequence similarity 46 member A 2 2
MIRT504394 HMX2 H6 family homeobox 2 2 4
MIRT504691 SLCO2B1 solute carrier organic anion transporter family member 2B1 2 8
MIRT512386 MTRNR2L3 MT-RNR2-like 3 2 6
MIRT513003 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT513084 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT519122 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT523836 F2RL1 F2R like trypsin receptor 1 2 2
MIRT565356 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT575895 Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT576894 Poteg POTE ankyrin domain family, member G 2 2
MIRT613780 RPS6 ribosomal protein S6 2 2
MIRT613934 POLR3A RNA polymerase III subunit A 2 2
MIRT614348 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614534 NOA1 nitric oxide associated 1 2 2
MIRT617019 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT618247 MANEAL mannosidase endo-alpha like 2 2
MIRT619051 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619442 ZNF517 zinc finger protein 517 2 2
MIRT619723 FPR2 formyl peptide receptor 2 2 2
MIRT620179 TRIM72 tripartite motif containing 72 2 2
MIRT620370 ANKRD62 ankyrin repeat domain 62 2 2
MIRT621263 RTN2 reticulon 2 2 2
MIRT621463 APOH apolipoprotein H 2 2
MIRT621571 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621683 TSPYL1 TSPY like 1 2 2
MIRT622866 PDE7A phosphodiesterase 7A 2 2
MIRT624669 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT625607 ZNF84 zinc finger protein 84 2 2
MIRT626111 IL23R interleukin 23 receptor 2 2
MIRT628380 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628553 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628671 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628747 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT628776 TMEM154 transmembrane protein 154 2 2
MIRT628918 ZNF430 zinc finger protein 430 2 2
MIRT629174 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629209 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629267 SLC5A8 solute carrier family 5 member 8 2 2
MIRT629498 AS3MT arsenite methyltransferase 2 2
MIRT629665 USP1 ubiquitin specific peptidase 1 2 2
MIRT629760 STK25 serine/threonine kinase 25 2 2
MIRT630899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631105 SLC15A2 solute carrier family 15 member 2 2 2
MIRT631112 ATCAY ATCAY, caytaxin 2 2
MIRT631450 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT631505 FFAR4 free fatty acid receptor 4 2 2
MIRT631580 ITGAL integrin subunit alpha L 2 2
MIRT631836 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT632342 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633214 ZNF584 zinc finger protein 584 2 2
MIRT633223 ZNF43 zinc finger protein 43 2 2
MIRT633480 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633511 LRRC27 leucine rich repeat containing 27 2 2
MIRT633615 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT633652 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633677 ZNF576 zinc finger protein 576 2 2
MIRT634196 TMOD2 tropomodulin 2 2 4
MIRT634388 PLSCR1 phospholipid scramblase 1 2 2
MIRT635817 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635962 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636114 YPEL1 yippee like 1 2 2
MIRT636164 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636768 CLUAP1 clusterin associated protein 1 2 2
MIRT637092 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637316 FAM9B family with sequence similarity 9 member B 2 2
MIRT637540 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637628 ZNF431 zinc finger protein 431 2 2
MIRT637826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637945 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637968 IRF1 interferon regulatory factor 1 2 2
MIRT638321 RNF11 ring finger protein 11 2 2
MIRT638386 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT639244 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT642608 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642793 SLC1A5 solute carrier family 1 member 5 2 2
MIRT643847 LACTB lactamase beta 2 4
MIRT644705 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT645148 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT646671 CCDC69 coiled-coil domain containing 69 2 2
MIRT647780 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648554 WDR92 WD repeat domain 92 2 2
MIRT648990 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT649099 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT650141 ZNF426 zinc finger protein 426 2 2
MIRT650791 GSR glutathione-disulfide reductase 2 2
MIRT654967 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655099 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT655516 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656289 METTL14 methyltransferase like 14 2 2
MIRT656497 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657074 JPH2 junctophilin 2 2 2
MIRT657314 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657419 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT659032 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659535 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661532 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT662029 FUT2 fucosyltransferase 2 2 2
MIRT663206 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663357 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663557 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663650 POLM DNA polymerase mu 2 2
MIRT663694 ABHD17B abhydrolase domain containing 17B 2 2
MIRT664370 CYB5A cytochrome b5 type A 2 2
MIRT664783 LIAS lipoic acid synthetase 2 4
MIRT665561 TXNL1 thioredoxin like 1 2 2
MIRT665950 TAOK1 TAO kinase 1 2 2
MIRT667338 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT667804 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT668804 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669470 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT669599 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669806 STOML1 stomatin like 1 2 2
MIRT669944 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670292 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670381 EMP2 epithelial membrane protein 2 2 2
MIRT670481 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670531 KIF1C kinesin family member 1C 2 4
MIRT670565 GLTP glycolipid transfer protein 2 2
MIRT670603 NPHP1 nephrocystin 1 2 2
MIRT670880 CYTIP cytohesin 1 interacting protein 2 2
MIRT670931 LIPG lipase G, endothelial type 2 2
MIRT671261 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671794 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT671897 GBP4 guanylate binding protein 4 2 2
MIRT672000 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672074 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT672319 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672853 C22orf29 retrotransposon Gag like 10 2 2
MIRT673395 WNT7B Wnt family member 7B 2 2
MIRT673537 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674285 ZNF724P zinc finger protein 724 2 2
MIRT674494 TIRAP TIR domain containing adaptor protein 2 2
MIRT675460 NUBPL nucleotide binding protein like 2 2
MIRT675569 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT676068 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676254 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676377 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676758 SNX2 sorting nexin 2 2 2
MIRT676773 NPHS1 NPHS1, nephrin 2 2
MIRT676874 ENSA endosulfine alpha 2 2
MIRT676918 KLHDC8A kelch domain containing 8A 2 2
MIRT676944 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676957 HFE hemochromatosis 2 2
MIRT676967 RNF19B ring finger protein 19B 2 2
MIRT676972 ZNF708 zinc finger protein 708 2 2
MIRT677042 ZNF34 zinc finger protein 34 2 2
MIRT677070 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677093 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677134 P2RX7 purinergic receptor P2X 7 2 2
MIRT677179 ZNF786 zinc finger protein 786 2 2
MIRT677228 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677320 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677455 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677809 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677937 ZNF519 zinc finger protein 519 2 2
MIRT678063 UBN2 ubinuclein 2 2 4
MIRT678072 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678252 FXN frataxin 2 2
MIRT678315 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678367 XIAP X-linked inhibitor of apoptosis 2 4
MIRT678372 RNF115 ring finger protein 115 2 2
MIRT678410 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678518 ZNF347 zinc finger protein 347 2 2
MIRT678566 CDK4 cyclin dependent kinase 4 2 2
MIRT678580 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678820 PDE6A phosphodiesterase 6A 2 2
MIRT678917 XPOT exportin for tRNA 2 2
MIRT679217 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679437 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT679595 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679755 TLR6 toll like receptor 6 2 2
MIRT679800 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT680057 CD96 CD96 molecule 2 2
MIRT680116 CCDC30 coiled-coil domain containing 30 2 4
MIRT680181 ZNF554 zinc finger protein 554 2 2
MIRT680439 WDR12 WD repeat domain 12 2 2
MIRT680789 ZNF578 zinc finger protein 578 2 2
MIRT692464 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT702952 HIP1 huntingtin interacting protein 1 2 2
MIRT706016 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706032 F2R coagulation factor II thrombin receptor 2 2
MIRT706135 MTRNR2L10 MT-RNR2-like 10 2 2
MIRT706394 HAS2 hyaluronan synthase 2 2 2
MIRT713293 DCP2 decapping mRNA 2 2 2
MIRT716583 BRAP BRCA1 associated protein 2 2
MIRT720433 C19orf47 chromosome 19 open reading frame 47 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-640 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer tissue and cell line (SKOV3)
hsa-miR-640 Cetuximab resistant High Colon Cancer cell line
hsa-miR-640 Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-640 Sorafenib 216239 NSC747971 approved sensitive Low Clear Cell Renal Cell Carcinoma cell line (786-O)
hsa-mir-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-640 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-640 Tamoxifen 2733525 NSC180973 approved sensitive cell line (TamR8)
hsa-miR-640 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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