pre-miRNA Information
pre-miRNA hsa-mir-640   
Genomic Coordinates chr19: 19435063 - 19435158
Synonyms MIRN640, hsa-mir-640, MIR640
Description Homo sapiens miR-640 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-640
Sequence 61| AUGAUCCAGGAACCUGCCUCU |81
Evidence Experimental
Experiments RT-PCR
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30153378 1 COSMIC
COSN23015356 12 COSMIC
COSN30513185 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs111726405 1 dbSNP
rs765622881 2 dbSNP
rs1249744889 6 dbSNP
rs752995186 12 dbSNP
rs758746736 13 dbSNP
rs918887970 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol VMAC   
Synonyms -
Description vimentin type intermediate filament associated coiled-coil protein
Transcript NM_001017921   
Expression
Putative miRNA Targets on VMAC
3'UTR of VMAC
(miRNA target sites are highlighted)
>VMAC|NM_001017921|3'UTR
   1 GCCCGGAATGCAGATTACAGAATGGAGACAGAAAGCCACTGCTGTCAGTGTCCTTGGGAGTCACCAGCACCCTGCAGGGG
  81 GACCCTACGGCAGAGCCAAAGTCCTGTCTAAGCATCAGAACAGGCTGAACAGTCAAAAAGTTTTCAAATAGGCCCACAGG
 161 CCAGGTGCAGACGTTTAACCCAGACAGAAGTGTTCTTGTTTGTTTTTAAGCTTTGAATCAGTCACCCTTGCTAAAAACCT
 241 GGCAATGCAAACACAAAGATCTGGATTTCTGGCAAGACTTGGCCAAGCTTGCCTGGAGTTCAGGGCACCCTCTTTAGCCA
 321 GGGTGTGAGTTTCTGTTTTTTGTTTTTTTTTTTTTAAGACAGAGTCCCACTCTGTCGCCCTGGCTGGGGTGCAGTGGTGC
 401 GATTTTGGCTAACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGTCTCATCCTTCAGAGTAGCTGGGATTACAG
 481 GCGCCCACCACCACACCCGGATATTTTATATTTTTGGTAGAGACCGGGGAGGGGAGGGGGTTTCACCATGTTGACCAGGC
 561 TGGTCTCAAACTCCTGACCTTAGGTGATCCACCCGCCTCGGCCTTCGAAAGTGCTGCAGTTATAGGTGTAAGCCACCGCG
 641 CCCGGCCCTAGCCTAGCTTTTGTAGCATGCAACTGTCTCCTTTTTATACGCCCTAAAGAATATATTTTTGAACTCCTTGT
 721 TTCTGCGCTGTCCTTCTTAGCCCAGGACATTCAGGGTGCTTTGCTTGTTGTCAAACCAGGGAAAGGAGAAAACTCCTGTG
 801 CCTTTCTGGGCCAGCCTGTCACCCTGGCCTGGTCGGCAGCCATTCCCCTACCTCCTCACTCAGGAACTGTCACACCAGGA
 881 ACCGGCGAGGGGCACAGCCTGTTTCAGACCAGAAAGGTCGGAGGCCACCCACGGCCTTCAGGATGGCGCCCGCCTGCCTG
 961 CCTGGCAACAGTGACCCCTCAGTGCAGTAACAATGGGCCCATTTTCTCCTCTGGATGAACAAGGAGGGGGGTTGTTTGTA
1041 CAAAGGAAAGGCAGGCTGGGGCCTGTCTGTGCTCAAGAATAAACCGGATGATTTCCTGGCCTGGGGGCAAAAAAAAAAAA
1121 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucuCCG--UCCAA-GGACCU--AGUa 5'
             |||  || || ||||||  ||| 
Target 5' cttGGCCAAGCTTGCCTGGAGTTCAg 3'
278 - 303 124.00 -11.90
2
miRNA  3' ucUCC--GUCCAAG----GACCUAGUa 5'
            :||  ||  |||    |||||| | 
Target 5' atGGGCCCATTTTCTCCTCTGGATGAa 3'
993 - 1019 119.00 -8.60
3
miRNA  3' ucuccgUCCAAGGACCUAGua 5'
                || |  ||||||:  
Target 5' acacaaAGAT--CTGGATTtc 3'
251 - 269 111.00 -9.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31515793 9 COSMIC
COSN24568915 51 COSMIC
COSN23699474 85 COSMIC
COSN30714749 107 COSMIC
COSN26085970 131 COSMIC
COSN20093493 347 COSMIC
COSN20115363 356 COSMIC
COSN25031718 566 COSMIC
COSN20115371 865 COSMIC
COSN6148182 1448 COSMIC
COSN24361876 1680 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1199502441 2 dbSNP
rs745818176 4 dbSNP
rs200243076 5 dbSNP
rs368962280 6 dbSNP
rs1267916206 9 dbSNP
rs1490048393 12 dbSNP
rs562678389 13 dbSNP
rs1445854604 16 dbSNP
rs1425149052 19 dbSNP
rs775969431 21 dbSNP
rs201840632 24 dbSNP
rs889048363 26 dbSNP
rs1372905308 29 dbSNP
rs1007358421 36 dbSNP
rs1209817661 37 dbSNP
rs1460748810 39 dbSNP
rs1018806213 46 dbSNP
rs375210531 47 dbSNP
rs773800643 49 dbSNP
rs1170657530 51 dbSNP
rs1040777292 54 dbSNP
rs1419204178 68 dbSNP
rs1182773643 70 dbSNP
rs1221312431 74 dbSNP
rs763165986 76 dbSNP
rs1210802544 79 dbSNP
rs1031316434 84 dbSNP
rs1276179439 89 dbSNP
rs371566095 89 dbSNP
rs567413944 90 dbSNP
rs759902423 94 dbSNP
rs1254143579 117 dbSNP
rs1483421393 126 dbSNP
rs541905735 132 dbSNP
rs148613326 137 dbSNP
rs1410376157 149 dbSNP
rs1266660470 150 dbSNP
rs981547187 156 dbSNP
rs1299999988 169 dbSNP
rs928837163 173 dbSNP
rs534462233 174 dbSNP
rs1354144173 182 dbSNP
rs113677644 189 dbSNP
rs534929901 193 dbSNP
rs1015606894 194 dbSNP
rs1407877414 196 dbSNP
rs1187794306 198 dbSNP
rs1473221717 201 dbSNP
rs752771622 202 dbSNP
rs144161499 207 dbSNP
rs992882426 208 dbSNP
rs1370675598 211 dbSNP
rs1023041707 216 dbSNP
rs931275023 224 dbSNP
rs1049756877 233 dbSNP
rs1332339420 234 dbSNP
rs1272344952 242 dbSNP
rs889004684 243 dbSNP
rs1403770202 246 dbSNP
rs1331094997 255 dbSNP
rs1304848251 256 dbSNP
rs1007492711 263 dbSNP
rs1040217022 272 dbSNP
rs970113611 274 dbSNP
rs1231790703 285 dbSNP
rs867202721 292 dbSNP
rs555952223 294 dbSNP
rs760761654 299 dbSNP
rs763974536 302 dbSNP
rs1329887068 304 dbSNP
rs1392682278 312 dbSNP
rs1439140659 313 dbSNP
rs1458137358 318 dbSNP
rs1414813483 319 dbSNP
rs1157645623 322 dbSNP
rs560453773 323 dbSNP
rs957151521 340 dbSNP
rs1339123182 342 dbSNP
rs1011618775 343 dbSNP
rs1258823278 343 dbSNP
rs35398442 343 dbSNP
rs398033783 343 dbSNP
rs796748585 343 dbSNP
rs1238258750 344 dbSNP
rs188039935 346 dbSNP
rs370257051 347 dbSNP
rs1343025272 350 dbSNP
rs1369014989 351 dbSNP
rs925105352 355 dbSNP
rs1022642150 356 dbSNP
rs754072859 356 dbSNP
rs1436278154 362 dbSNP
rs1453263971 370 dbSNP
rs970270900 375 dbSNP
rs1287576287 377 dbSNP
rs1199418502 378 dbSNP
rs1453705795 392 dbSNP
rs981683605 393 dbSNP
rs574105112 395 dbSNP
rs147749521 398 dbSNP
rs913570189 402 dbSNP
rs1190159575 411 dbSNP
rs1188808746 418 dbSNP
rs1390423943 420 dbSNP
rs972935771 421 dbSNP
rs943667728 424 dbSNP
rs1259424510 425 dbSNP
rs1204438239 428 dbSNP
rs1423560607 430 dbSNP
rs1483516917 433 dbSNP
rs1040725432 435 dbSNP
rs919967989 440 dbSNP
rs370337073 442 dbSNP
rs1345895816 461 dbSNP
rs1302873684 477 dbSNP
rs1392184676 483 dbSNP
rs1050161393 484 dbSNP
rs1293920598 489 dbSNP
rs547933176 490 dbSNP
rs1403509068 495 dbSNP
rs1407630345 498 dbSNP
rs1324776260 499 dbSNP
rs568053669 500 dbSNP
rs1374334065 505 dbSNP
rs888582694 518 dbSNP
rs1300212246 536 dbSNP
rs1040353572 541 dbSNP
rs1192170289 546 dbSNP
rs1433728206 551 dbSNP
rs901668729 554 dbSNP
rs1185722346 555 dbSNP
rs1366241054 559 dbSNP
rs1279739175 571 dbSNP
rs998654602 575 dbSNP
rs1245438583 578 dbSNP
rs1282517776 580 dbSNP
rs1358550008 592 dbSNP
rs1227138248 595 dbSNP
rs142610086 596 dbSNP
rs1014251283 597 dbSNP
rs1283441228 600 dbSNP
rs1354223995 601 dbSNP
rs892849422 604 dbSNP
rs1308080084 608 dbSNP
rs1411198804 611 dbSNP
rs1393853660 619 dbSNP
rs1011355116 624 dbSNP
rs420458 628 dbSNP
rs969736856 629 dbSNP
rs577108413 638 dbSNP
rs1032195740 639 dbSNP
rs74809330 640 dbSNP
rs1439691805 642 dbSNP
rs988082454 644 dbSNP
rs913841481 646 dbSNP
rs746529859 647 dbSNP
rs529840203 649 dbSNP
rs768145783 654 dbSNP
rs1275476030 667 dbSNP
rs1231886527 672 dbSNP
rs1334738163 674 dbSNP
rs1289585233 676 dbSNP
rs1369762739 681 dbSNP
rs1472822799 686 dbSNP
rs376282679 688 dbSNP
rs973290176 689 dbSNP
rs115660924 690 dbSNP
rs952891866 692 dbSNP
rs749864099 700 dbSNP
rs920917358 703 dbSNP
rs10419322 719 dbSNP
rs1389773051 725 dbSNP
rs76856385 727 dbSNP
rs572420071 728 dbSNP
rs1469051929 732 dbSNP
rs1255180703 733 dbSNP
rs1212192840 737 dbSNP
rs1468368226 742 dbSNP
rs976756226 747 dbSNP
rs1342388029 748 dbSNP
rs1285485073 754 dbSNP
rs1245634478 757 dbSNP
rs774894156 759 dbSNP
rs923144037 766 dbSNP
rs1347864426 778 dbSNP
rs1278478074 782 dbSNP
rs144852522 796 dbSNP
rs1372703551 800 dbSNP
rs560472399 801 dbSNP
rs1278989224 809 dbSNP
rs940219715 812 dbSNP
rs181125697 816 dbSNP
rs1320141436 821 dbSNP
rs1398913118 823 dbSNP
rs532442622 827 dbSNP
rs1158044173 830 dbSNP
rs1268588812 833 dbSNP
rs372111046 835 dbSNP
rs1397109130 836 dbSNP
rs1191988880 846 dbSNP
rs1454061124 849 dbSNP
rs1243082379 854 dbSNP
rs11393158 863 dbSNP
rs397768858 865 dbSNP
rs199795148 866 dbSNP
rs869259347 866 dbSNP
rs1284242643 876 dbSNP
rs1210965292 879 dbSNP
rs374299876 884 dbSNP
rs1044389049 885 dbSNP
rs905849738 899 dbSNP
rs1365609800 900 dbSNP
rs1044188150 920 dbSNP
rs905629517 921 dbSNP
rs1180511182 927 dbSNP
rs1002455945 933 dbSNP
rs1035339673 934 dbSNP
rs1377365629 940 dbSNP
rs7260578 943 dbSNP
rs374807753 945 dbSNP
rs1465831827 948 dbSNP
rs775743911 949 dbSNP
rs1301408042 952 dbSNP
rs760679631 952 dbSNP
rs531361314 953 dbSNP
rs758400538 961 dbSNP
rs985938911 966 dbSNP
rs1277604231 967 dbSNP
rs1018336458 968 dbSNP
rs1307693875 970 dbSNP
rs1396750971 972 dbSNP
rs548290294 977 dbSNP
rs1361013514 981 dbSNP
rs1293765891 982 dbSNP
rs953660546 983 dbSNP
rs983796907 987 dbSNP
rs117054368 992 dbSNP
rs1411656365 997 dbSNP
rs527317952 998 dbSNP
rs939767664 1006 dbSNP
rs1037637160 1014 dbSNP
rs761806380 1027 dbSNP
rs546968154 1028 dbSNP
rs988784213 1031 dbSNP
rs570859316 1032 dbSNP
rs73539613 1038 dbSNP
rs905879732 1064 dbSNP
rs1277905955 1068 dbSNP
rs531363004 1070 dbSNP
rs1273613849 1073 dbSNP
rs1044214122 1076 dbSNP
rs745514199 1081 dbSNP
rs1194819838 1086 dbSNP
rs373466616 1087 dbSNP
rs556400136 1090 dbSNP
rs1227809983 1095 dbSNP
rs905598444 1099 dbSNP
rs938449760 1106 dbSNP
rs1253142122 1109 dbSNP
rs1326966550 1119 dbSNP
rs891896834 1120 dbSNP
rs549946720 1123 dbSNP
rs1010307457 1124 dbSNP
rs1419088627 1128 dbSNP
rs1200929309 1131 dbSNP
rs1175074036 1132 dbSNP
rs1379673302 1135 dbSNP
rs1021219800 1144 dbSNP
rs965183310 1145 dbSNP
rs570252377 1146 dbSNP
rs1168190679 1157 dbSNP
rs758170390 1159 dbSNP
rs1056709980 1161 dbSNP
rs186491355 1162 dbSNP
rs1272400388 1163 dbSNP
rs1239699652 1165 dbSNP
rs1317543506 1172 dbSNP
rs1368834968 1174 dbSNP
rs1028278979 1180 dbSNP
rs1222183982 1181 dbSNP
rs953941791 1183 dbSNP
rs984216898 1191 dbSNP
rs1366860721 1192 dbSNP
rs1384942018 1193 dbSNP
rs896840463 1197 dbSNP
rs1347503019 1200 dbSNP
rs1331463316 1202 dbSNP
rs779575993 1203 dbSNP
rs1418065270 1214 dbSNP
rs994822665 1220 dbSNP
rs1048672928 1221 dbSNP
rs961434311 1224 dbSNP
rs1252172912 1225 dbSNP
rs888702009 1226 dbSNP
rs1486790340 1227 dbSNP
rs1007019010 1229 dbSNP
rs950185155 1236 dbSNP
rs1213727561 1237 dbSNP
rs1353082663 1263 dbSNP
rs151296549 1275 dbSNP
rs1236795023 1283 dbSNP
rs190953616 1284 dbSNP
rs572425438 1287 dbSNP
rs751165387 1288 dbSNP
rs541481780 1289 dbSNP
rs1287704396 1290 dbSNP
rs1031006152 1297 dbSNP
rs956766371 1299 dbSNP
rs376070264 1300 dbSNP
rs1175076456 1302 dbSNP
rs754569456 1311 dbSNP
rs1376757858 1319 dbSNP
rs1193613157 1322 dbSNP
rs779563668 1326 dbSNP
rs746853320 1327 dbSNP
rs1185872283 1335 dbSNP
rs914457391 1342 dbSNP
rs1487973240 1344 dbSNP
rs1488446487 1345 dbSNP
rs1281164145 1346 dbSNP
rs1189966995 1353 dbSNP
rs1345961944 1356 dbSNP
rs4807823 1361 dbSNP
rs1434090882 1369 dbSNP
rs979878891 1374 dbSNP
rs946140275 1381 dbSNP
rs927160605 1382 dbSNP
rs578038925 1384 dbSNP
rs532229974 1385 dbSNP
rs546119688 1390 dbSNP
rs929622722 1392 dbSNP
rs1431819856 1394 dbSNP
rs562746797 1398 dbSNP
rs1028142970 1404 dbSNP
rs1048536685 1408 dbSNP
rs1371146988 1412 dbSNP
rs1169308800 1413 dbSNP
rs1475475966 1424 dbSNP
rs1259588604 1425 dbSNP
rs150429696 1427 dbSNP
rs1484771425 1430 dbSNP
rs1017032740 1441 dbSNP
rs1196617546 1443 dbSNP
rs565653183 1453 dbSNP
rs1039877235 1454 dbSNP
rs1295217113 1460 dbSNP
rs1316840228 1461 dbSNP
rs1434065755 1465 dbSNP
rs901381030 1470 dbSNP
rs1214142616 1475 dbSNP
rs1339377096 1483 dbSNP
rs972904170 1485 dbSNP
rs1392803942 1487 dbSNP
rs998263560 1488 dbSNP
rs58848222 1490 dbSNP
rs1461817828 1493 dbSNP
rs1419936322 1494 dbSNP
rs1162710622 1504 dbSNP
rs1228604953 1524 dbSNP
rs1471818529 1525 dbSNP
rs1313810011 1530 dbSNP
rs1182757349 1532 dbSNP
rs1024041841 1533 dbSNP
rs1238252738 1534 dbSNP
rs1240619747 1534 dbSNP
rs1323754191 1534 dbSNP
rs1385635602 1534 dbSNP
rs1396430242 1534 dbSNP
rs1404730123 1534 dbSNP
rs1441280284 1534 dbSNP
rs149767466 1534 dbSNP
rs545404295 1534 dbSNP
rs566169217 1534 dbSNP
rs57251248 1534 dbSNP
rs767306807 1534 dbSNP
rs745981579 1535 dbSNP
rs1319397749 1539 dbSNP
rs1220054316 1541 dbSNP
rs1267731471 1542 dbSNP
rs1159200026 1545 dbSNP
rs1489065132 1547 dbSNP
rs1208531051 1555 dbSNP
rs1246503395 1558 dbSNP
rs1471234652 1562 dbSNP
rs1178267652 1563 dbSNP
rs1378626053 1563 dbSNP
rs1454939727 1566 dbSNP
rs1451576528 1567 dbSNP
rs1189442721 1570 dbSNP
rs1255316679 1570 dbSNP
rs971116765 1570 dbSNP
rs1285644207 1573 dbSNP
rs374899357 1575 dbSNP
rs1031052501 1580 dbSNP
rs980260347 1581 dbSNP
rs927450271 1585 dbSNP
rs1284797372 1587 dbSNP
rs1422103582 1590 dbSNP
rs1372861018 1601 dbSNP
rs957009872 1605 dbSNP
rs1010886020 1606 dbSNP
rs936264290 1607 dbSNP
rs138187090 1617 dbSNP
rs913226201 1624 dbSNP
rs946034111 1632 dbSNP
rs561851125 1634 dbSNP
rs980014319 1649 dbSNP
rs901953302 1650 dbSNP
rs1318306822 1653 dbSNP
rs932041550 1655 dbSNP
rs1390543345 1657 dbSNP
rs1049604860 1659 dbSNP
rs1195972996 1664 dbSNP
rs1486994514 1664 dbSNP
rs200591554 1664 dbSNP
rs1211034309 1667 dbSNP
rs1276142838 1668 dbSNP
rs758184179 1668 dbSNP
rs927129318 1675 dbSNP
rs144101466 1676 dbSNP
rs541649265 1676 dbSNP
rs1339843744 1678 dbSNP
rs11332576 1680 dbSNP
rs1271806178 1680 dbSNP
rs397859671 1680 dbSNP
rs959901595 1680 dbSNP
rs556940079 1681 dbSNP
rs1393626047 1683 dbSNP
rs796972278 1683 dbSNP
rs550097066 1684 dbSNP
rs1229557946 1685 dbSNP
rs1396337720 1685 dbSNP
rs1312759792 1686 dbSNP
rs1336116111 1687 dbSNP
rs1228258502 1688 dbSNP
rs1420699476 1690 dbSNP
rs200611338 1690 dbSNP
rs1266692104 1691 dbSNP
rs1016820082 1692 dbSNP
rs1477110630 1697 dbSNP
rs1209643169 1702 dbSNP
rs1423612322 1704 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084043. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep2 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucUCCGUCCAAGGACCUAGUa 5'
            | ||:||    ||||||| 
Target 5' --AUGCGGG----UGGAUCAc 3'
1 - 15
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084043
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep2
Location of target site ENST00000339485.3 | 3UTR | AUGCGGGUGGAUCACCUGAGGUCAGGAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE38974 Chronic obstructive pulmonary disease -0.41 2.1e-2 -0.242 1.2e-1 25 Click to see details
GSE27834 Pluripotent stem cells -0.312 1.2e-1 -0.318 1.2e-1 16 Click to see details
GSE26953 Aortic valvular endothelial cells 0.243 1.3e-1 0.236 1.3e-1 24 Click to see details
GSE28544 Breast cancer 0.213 1.6e-1 0.213 1.6e-1 24 Click to see details
GSE19783 ER+ ER+ breast cancer -0.178 2.3e-1 -0.189 2.1e-1 20 Click to see details
GSE28260 Renal cortex and medulla 0.197 2.6e-1 0.298 1.6e-1 13 Click to see details
GSE38226 Liver fibrosis -0.113 3.1e-1 -0.242 1.5e-1 21 Click to see details
GSE19783 ER- ER- breast cancer -0.055 3.2e-1 -0.092 2.1e-1 79 Click to see details
GSE21849 B cell lymphoma -0.073 3.5e-1 0.050 4.0e-1 29 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.06 3.9e-1 0.060 3.9e-1 25 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.065 3.9e-1 0.257 1.4e-1 20 Click to see details
GSE19536 Breast cancer 0.008 4.7e-1 -0.044 3.3e-1 100 Click to see details
GSE14794 Lymphoblastoid cells 0 5.0e-1 -0.041 3.5e-1 90 Click to see details
GSE14794 Lymphoblastoid cells 0 5.0e-1 -0.041 3.5e-1 90 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
194 hsa-miR-640 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT097121 TNPO1 transportin 1 2 2
MIRT115090 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT204603 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204634 MOB4 MOB family member 4, phocein 2 8
MIRT344451 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT405772 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT445876 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT497418 FAM46A family with sequence similarity 46 member A 2 2
MIRT504394 HMX2 H6 family homeobox 2 2 4
MIRT504691 SLCO2B1 solute carrier organic anion transporter family member 2B1 2 8
MIRT512386 MTRNR2L3 MT-RNR2-like 3 2 6
MIRT513003 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT513084 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT519122 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT523836 F2RL1 F2R like trypsin receptor 1 2 2
MIRT565356 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT575895 Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT576894 Poteg POTE ankyrin domain family, member G 2 2
MIRT613780 RPS6 ribosomal protein S6 2 2
MIRT613934 POLR3A RNA polymerase III subunit A 2 2
MIRT614348 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614534 NOA1 nitric oxide associated 1 2 2
MIRT617019 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT618247 MANEAL mannosidase endo-alpha like 2 2
MIRT619051 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619442 ZNF517 zinc finger protein 517 2 2
MIRT619723 FPR2 formyl peptide receptor 2 2 2
MIRT620179 TRIM72 tripartite motif containing 72 2 2
MIRT620370 ANKRD62 ankyrin repeat domain 62 2 2
MIRT621263 RTN2 reticulon 2 2 2
MIRT621463 APOH apolipoprotein H 2 2
MIRT621571 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621683 TSPYL1 TSPY like 1 2 2
MIRT622866 PDE7A phosphodiesterase 7A 2 2
MIRT624669 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT625607 ZNF84 zinc finger protein 84 2 2
MIRT626111 IL23R interleukin 23 receptor 2 2
MIRT628380 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628553 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628671 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628747 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT628776 TMEM154 transmembrane protein 154 2 2
MIRT628918 ZNF430 zinc finger protein 430 2 2
MIRT629174 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629209 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629267 SLC5A8 solute carrier family 5 member 8 2 2
MIRT629498 AS3MT arsenite methyltransferase 2 2
MIRT629665 USP1 ubiquitin specific peptidase 1 2 2
MIRT629760 STK25 serine/threonine kinase 25 2 2
MIRT630899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631105 SLC15A2 solute carrier family 15 member 2 2 2
MIRT631112 ATCAY ATCAY, caytaxin 2 2
MIRT631450 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT631505 FFAR4 free fatty acid receptor 4 2 2
MIRT631580 ITGAL integrin subunit alpha L 2 2
MIRT631836 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT632342 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633214 ZNF584 zinc finger protein 584 2 2
MIRT633223 ZNF43 zinc finger protein 43 2 2
MIRT633480 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633511 LRRC27 leucine rich repeat containing 27 2 2
MIRT633615 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT633652 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633677 ZNF576 zinc finger protein 576 2 2
MIRT634196 TMOD2 tropomodulin 2 2 4
MIRT634388 PLSCR1 phospholipid scramblase 1 2 2
MIRT635817 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635962 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636114 YPEL1 yippee like 1 2 2
MIRT636164 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636768 CLUAP1 clusterin associated protein 1 2 2
MIRT637092 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637316 FAM9B family with sequence similarity 9 member B 2 2
MIRT637540 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637628 ZNF431 zinc finger protein 431 2 2
MIRT637826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637945 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637968 IRF1 interferon regulatory factor 1 2 2
MIRT638321 RNF11 ring finger protein 11 2 2
MIRT638386 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT639244 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT642608 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642793 SLC1A5 solute carrier family 1 member 5 2 2
MIRT643847 LACTB lactamase beta 2 4
MIRT644705 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT645148 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT646671 CCDC69 coiled-coil domain containing 69 2 2
MIRT647780 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648554 WDR92 WD repeat domain 92 2 2
MIRT648990 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT649099 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT650141 ZNF426 zinc finger protein 426 2 2
MIRT650791 GSR glutathione-disulfide reductase 2 2
MIRT654967 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655099 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT655516 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656289 METTL14 methyltransferase like 14 2 2
MIRT656497 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657074 JPH2 junctophilin 2 2 2
MIRT657314 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657419 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT659032 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659535 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661532 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT662029 FUT2 fucosyltransferase 2 2 2
MIRT663206 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663357 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663557 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663650 POLM DNA polymerase mu 2 2
MIRT663694 ABHD17B abhydrolase domain containing 17B 2 2
MIRT664370 CYB5A cytochrome b5 type A 2 2
MIRT664783 LIAS lipoic acid synthetase 2 4
MIRT665561 TXNL1 thioredoxin like 1 2 2
MIRT665950 TAOK1 TAO kinase 1 2 2
MIRT667338 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT667804 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT668804 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669470 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT669599 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669806 STOML1 stomatin like 1 2 2
MIRT669944 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670292 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670381 EMP2 epithelial membrane protein 2 2 2
MIRT670481 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670531 KIF1C kinesin family member 1C 2 4
MIRT670565 GLTP glycolipid transfer protein 2 2
MIRT670603 NPHP1 nephrocystin 1 2 2
MIRT670880 CYTIP cytohesin 1 interacting protein 2 2
MIRT670931 LIPG lipase G, endothelial type 2 2
MIRT671261 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671794 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT671897 GBP4 guanylate binding protein 4 2 2
MIRT672000 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672074 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT672319 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672853 C22orf29 retrotransposon Gag like 10 2 2
MIRT673395 WNT7B Wnt family member 7B 2 2
MIRT673537 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674285 ZNF724P zinc finger protein 724 2 2
MIRT674494 TIRAP TIR domain containing adaptor protein 2 2
MIRT675460 NUBPL nucleotide binding protein like 2 2
MIRT675569 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT676068 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676254 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676377 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676758 SNX2 sorting nexin 2 2 2
MIRT676773 NPHS1 NPHS1, nephrin 2 2
MIRT676874 ENSA endosulfine alpha 2 2
MIRT676918 KLHDC8A kelch domain containing 8A 2 2
MIRT676944 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676957 HFE hemochromatosis 2 2
MIRT676967 RNF19B ring finger protein 19B 2 2
MIRT676972 ZNF708 zinc finger protein 708 2 2
MIRT677042 ZNF34 zinc finger protein 34 2 2
MIRT677070 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677093 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677134 P2RX7 purinergic receptor P2X 7 2 2
MIRT677179 ZNF786 zinc finger protein 786 2 2
MIRT677228 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677320 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677455 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677809 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677937 ZNF519 zinc finger protein 519 2 2
MIRT678063 UBN2 ubinuclein 2 2 4
MIRT678072 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678252 FXN frataxin 2 2
MIRT678315 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678367 XIAP X-linked inhibitor of apoptosis 2 4
MIRT678372 RNF115 ring finger protein 115 2 2
MIRT678410 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678518 ZNF347 zinc finger protein 347 2 2
MIRT678566 CDK4 cyclin dependent kinase 4 2 2
MIRT678580 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678820 PDE6A phosphodiesterase 6A 2 2
MIRT678917 XPOT exportin for tRNA 2 2
MIRT679217 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679437 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT679595 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679755 TLR6 toll like receptor 6 2 2
MIRT679800 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT680057 CD96 CD96 molecule 2 2
MIRT680116 CCDC30 coiled-coil domain containing 30 2 4
MIRT680181 ZNF554 zinc finger protein 554 2 2
MIRT680439 WDR12 WD repeat domain 12 2 2
MIRT680789 ZNF578 zinc finger protein 578 2 2
MIRT692464 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT702952 HIP1 huntingtin interacting protein 1 2 2
MIRT706016 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706032 F2R coagulation factor II thrombin receptor 2 2
MIRT706135 MTRNR2L10 MT-RNR2-like 10 2 2
MIRT706394 HAS2 hyaluronan synthase 2 2 2
MIRT713293 DCP2 decapping mRNA 2 2 2
MIRT716583 BRAP BRCA1 associated protein 2 2
MIRT720433 C19orf47 chromosome 19 open reading frame 47 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-640 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer tissue and cell line (SKOV3)
hsa-miR-640 Cetuximab resistant High Colon Cancer cell line
hsa-miR-640 Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-640 Sorafenib 216239 NSC747971 approved sensitive Low Clear Cell Renal Cell Carcinoma cell line (786-O)
hsa-mir-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-640 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-640 Tamoxifen 2733525 NSC180973 approved sensitive cell line (TamR8)
hsa-miR-640 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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