pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CRCP   
Synonyms CGRP-RCP, CGRPRCP, RCP, RCP9
Description CGRP receptor component
Transcript NM_001040647   
Other Transcripts NM_001040648 , NM_001142414 , NM_014478   
Expression
Putative miRNA Targets on CRCP
3'UTR of CRCP
(miRNA target sites are highlighted)
>CRCP|NM_001040647|3'UTR
   1 AAGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATTGTTTATT
  81 TGATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCACAAAAATAAGTTAAAAAGAAATATTT
 161 GTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGCAGAGAGCTGAAGGTGGGGACAGTGACCGCG
 241 GACCCCTCTGTGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGCACAGCGGGGAAAATG
 321 CTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCATCTGCTTCCCTGGGAACTTACTAAGGGGCCCAGAGCACTG
 401 TTGGAAGTCTGGTTAGAGTCCCCAGAGAGTTACTCTAAGTTAAAATGAGCCACTGACCTTGGCTCACCTTAGAGGAATTT
 481 CCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCCTTTTCTCTGCTGGCA
 561 GGGGCTTTGTTTACCAGCTCACTGTTTAGGCTAAATGTTAGGGACCAGATCACTGCAGTTGAAAACGGGCACTCCAGGCT
 641 TAGTGACAGTGGCAGCAGAAACAGTGTTGGCTGCCTTTCTGACCACCCCACTTTCCTGCCCTGAGACAGCAGCCCAGGGC
 721 AGGTGCTTCATATTCAGACCAGGTAAGCCTCATTTGCACAACAGTCAAATTGTTTGTTCCTTTAAAAAGGACACAATTAG
 801 CCTGGCACGGTGACTCATGCTTGTAATCCCAGCACTTTGGGAGGGCAAGGCAGGCGGATCACCTGAGGTCAGGAGTTTGA
 881 GACCAGCCTCACCAACATGGAAAAACCCCATCTCTACTAAAAAAATACAAAATTAACCAGGGGTGATGGCACATTCCTGT
 961 AATCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGAGGTGAGCCAAGATTGCAC
1041 CATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTTCATCTAAAAAACAGAAAATATTAAGATGATTACCATGTGAAAAC
1121 CTTTTTAATATTCAGGATTTGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTCCTGCGAATATTGCTGAA
1201 AATCGGATTTTCCACATTCACTTTCTTCCCTGTTTTAGGGAAGAAAATGATCATAGACATTCGATTTTCCAAATTGGCGC
1281 TCTTATTTTCAATGCTAATTGGATTACTTCTCTTCCAACCCTCCTGCCCGTCCATCCATCCCAGTCCCCAGGCATCTTAA
1361 CCTTACCATCTGAGCTTCAGCTGAAATCTGTTTATAGGCAACATTGAAAGTACCAGATTGGGGCCAGGTGTAGCGGCCCA
1441 CACCTGTAATCCCAGCACTTTGGGAGGCGGAGGCTAGCGGATCATGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATG
1521 GTGAAACCCCCATCTCTACTAAAGATATAAAAAACTAGCCGAGCGTGGTGTTGCATGCCTGTGATCCCAGCTACTCGGGA
1601 GGCTGAGGCGGGGGAATCGCTTGAACCGGGGAGGCAGAGGTTGCAGTGAGCCAGATCGTGCATTGCACTCCAGCCTGGCC
1681 GACAGGGTGAGACTCCATCTCAAAAAAGAGAAAGTACCAGATTGTACTTTTAAATCTGTCTAGCGTATTGAGAATTTTAG
1761 TGGGAGCTGTTGATTTATTTCTCAGGGCATACATGTGCCAATCTGTCTCATTGTTGTCTCTCTCTTTTTTTTTTTTTTTT
1841 TTGAGACAGTCTCGCTGTGTTGCCCAGGAGTGCAGTGGCACGATCTCTGCTCACTGCAACCTCTGCCTCCCAGATTCAAG
1921 CGATTCTGGTGCCTTAGCCTCCTGAGTAGCTGGGACTTACAGGCACGTACCACTATACCCTGCTAAAATTTGTATTTTTA
2001 GTAGAGACAGGGTTTTGCCATATTGGCCAGGCTAGTCGTAATGTCTCTTTTTAACACTGAATATGTTAGGTGGTTTTTCT
2081 TGATGGATTTAGGGTTAACCTAGTTAATAATAAATTGTTTCCAGGTAATTATCAAGTTTTGTCATTTTATAAATCTGAAG
2161 AGTTAATATTGTCATCGATACAAATAAAGTGAAATCTGACTGAGGCTAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  :||||||| 
Target 5' acTGCAACCTCTGCCTCCCAg 3'
1893 - 1913 167.00 -29.30
2
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            ||  ||||| :|||||:: 
Target 5' tcTGGTGCCTTAGCCTCCTGa 3'
1925 - 1945 135.00 -21.30
3
miRNA  3' ugaCGUCGGA---ACUGGAGGGuc 5'
             || ||||   ||||| |||  
Target 5' ttgGCTGCCTTTCTGACCACCCca 3'
667 - 690 118.00 -20.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31600471 6 COSMIC
COSN30615380 21 COSMIC
COSN18719456 22 COSMIC
COSN30524137 61 COSMIC
COSN30495160 65 COSMIC
COSN31578092 86 COSMIC
COSN20064290 158 COSMIC
COSN9506246 386 COSMIC
COSN30175788 546 COSMIC
COSN15302897 628 COSMIC
COSN26556302 646 COSMIC
COSN17076218 1348 COSMIC
COSN17280886 1695 COSMIC
COSN32061343 1843 COSMIC
COSN14891954 1862 COSMIC
COSN17037528 2007 COSMIC
COSN18953201 2134 COSMIC
rs875971 252 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1357355973 3 dbSNP
rs749987614 6 dbSNP
rs754807926 8 dbSNP
rs1282258939 14 dbSNP
rs1488037087 15 dbSNP
rs1217428335 16 dbSNP
rs1266023283 17 dbSNP
rs1484963086 18 dbSNP
rs143456688 19 dbSNP
rs779924167 20 dbSNP
rs969034944 21 dbSNP
rs751502627 22 dbSNP
rs1164698429 23 dbSNP
rs541138195 28 dbSNP
rs1336931569 32 dbSNP
rs1418610244 41 dbSNP
rs903172974 45 dbSNP
rs781067936 52 dbSNP
rs557466509 56 dbSNP
rs1413017844 61 dbSNP
rs181793565 62 dbSNP
rs1356196665 63 dbSNP
rs983612140 69 dbSNP
rs765989328 75 dbSNP
rs762795573 77 dbSNP
rs1395901888 91 dbSNP
rs1399894743 98 dbSNP
rs1403701220 105 dbSNP
rs73699725 106 dbSNP
rs1342710718 108 dbSNP
rs1178005094 109 dbSNP
rs545696734 110 dbSNP
rs1237328019 132 dbSNP
rs562490900 144 dbSNP
rs1228601304 148 dbSNP
rs748143716 149 dbSNP
rs1247269253 153 dbSNP
rs942086780 157 dbSNP
rs1319407054 159 dbSNP
rs1037756125 164 dbSNP
rs1223980229 166 dbSNP
rs531499304 170 dbSNP
rs1023225686 192 dbSNP
rs575351642 194 dbSNP
rs922052143 200 dbSNP
rs755990168 201 dbSNP
rs147138211 217 dbSNP
rs1281794733 224 dbSNP
rs1015377073 230 dbSNP
rs1347057229 231 dbSNP
rs561713662 238 dbSNP
rs1485715119 239 dbSNP
rs890364364 240 dbSNP
rs999862152 241 dbSNP
rs1267891264 244 dbSNP
rs1487498027 246 dbSNP
rs114209437 251 dbSNP
rs875971 252 dbSNP
rs1010778624 253 dbSNP
rs570462940 256 dbSNP
rs1193589762 257 dbSNP
rs539483826 269 dbSNP
rs1023386939 272 dbSNP
rs910713851 273 dbSNP
rs548236904 274 dbSNP
rs969152476 280 dbSNP
rs1364783066 281 dbSNP
rs947596939 284 dbSNP
rs1358806230 285 dbSNP
rs770515570 285 dbSNP
rs1315009625 298 dbSNP
rs1436289497 301 dbSNP
rs1377974983 303 dbSNP
rs1175179903 311 dbSNP
rs2292936 312 dbSNP
rs1376081049 315 dbSNP
rs960297016 316 dbSNP
rs745482498 320 dbSNP
rs1057441861 325 dbSNP
rs537599976 329 dbSNP
rs2292937 330 dbSNP
rs535751630 334 dbSNP
rs1387775008 335 dbSNP
rs1383310338 344 dbSNP
rs1255769726 351 dbSNP
rs1208515911 353 dbSNP
rs186186866 361 dbSNP
rs777119968 366 dbSNP
rs1309757552 377 dbSNP
rs1323284235 384 dbSNP
rs1329733932 387 dbSNP
rs948635302 393 dbSNP
rs1295261094 398 dbSNP
rs1415623152 399 dbSNP
rs190509544 400 dbSNP
rs1302018354 401 dbSNP
rs138775484 407 dbSNP
rs535128829 409 dbSNP
rs1171307665 421 dbSNP
rs922001496 423 dbSNP
rs576222141 428 dbSNP
rs1423999259 429 dbSNP
rs1255106056 430 dbSNP
rs1180432843 434 dbSNP
rs1051685823 438 dbSNP
rs1259200734 457 dbSNP
rs911885072 464 dbSNP
rs935230710 466 dbSNP
rs142728057 476 dbSNP
rs893763877 478 dbSNP
rs867767219 482 dbSNP
rs946516689 485 dbSNP
rs1044950404 486 dbSNP
rs1029751822 490 dbSNP
rs1205664925 493 dbSNP
rs755277093 494 dbSNP
rs369369726 508 dbSNP
rs1449663185 509 dbSNP
rs577713213 512 dbSNP
rs1003314246 513 dbSNP
rs1017839865 515 dbSNP
rs1398079422 516 dbSNP
rs968828888 518 dbSNP
rs1439393871 520 dbSNP
rs1457989797 521 dbSNP
rs1156900029 523 dbSNP
rs1367492544 524 dbSNP
rs1034649931 531 dbSNP
rs1162265364 537 dbSNP
rs1420563613 545 dbSNP
rs1239166392 551 dbSNP
rs1454718611 555 dbSNP
rs1293463714 558 dbSNP
rs773195556 559 dbSNP
rs1003913976 571 dbSNP
rs1456807117 573 dbSNP
rs538915425 578 dbSNP
rs1355731916 581 dbSNP
rs1015587384 588 dbSNP
rs1241440389 594 dbSNP
rs963621538 596 dbSNP
rs763039523 600 dbSNP
rs956325029 603 dbSNP
rs1374508290 609 dbSNP
rs992959412 610 dbSNP
rs1327073219 614 dbSNP
rs563328071 617 dbSNP
rs144793361 618 dbSNP
rs1044326131 627 dbSNP
rs316305 628 dbSNP
rs1318226554 630 dbSNP
rs148551979 633 dbSNP
rs941152610 635 dbSNP
rs1397353432 641 dbSNP
rs1239601753 647 dbSNP
rs561927029 649 dbSNP
rs1200214490 651 dbSNP
rs527445169 657 dbSNP
rs1036870434 663 dbSNP
rs912016039 665 dbSNP
rs1207018471 670 dbSNP
rs1488729625 682 dbSNP
rs142911355 684 dbSNP
rs564208807 691 dbSNP
rs1351243858 696 dbSNP
rs889432655 699 dbSNP
rs79282496 713 dbSNP
rs199497946 717 dbSNP
rs746267991 735 dbSNP
rs569521772 743 dbSNP
rs758204430 744 dbSNP
rs1401331949 754 dbSNP
rs76817934 759 dbSNP
rs549371866 764 dbSNP
rs1164241609 775 dbSNP
rs1418190707 780 dbSNP
rs939046994 781 dbSNP
rs1404788373 795 dbSNP
rs1173598332 796 dbSNP
rs1056607800 797 dbSNP
rs1264138081 799 dbSNP
rs886899481 810 dbSNP
rs956270525 816 dbSNP
rs1478209762 817 dbSNP
rs1262667739 828 dbSNP
rs1367228974 831 dbSNP
rs1004266064 833 dbSNP
rs917371068 839 dbSNP
rs970437021 843 dbSNP
rs1166073525 844 dbSNP
rs1016628765 854 dbSNP
rs62465483 855 dbSNP
rs1464738674 856 dbSNP
rs1344151054 857 dbSNP
rs995067290 858 dbSNP
rs1219863490 861 dbSNP
rs1340610011 867 dbSNP
rs1277081496 873 dbSNP
rs777720510 876 dbSNP
rs1029084191 882 dbSNP
rs1335251445 885 dbSNP
rs909764052 888 dbSNP
rs941265859 889 dbSNP
rs1173465619 902 dbSNP
rs953540566 903 dbSNP
rs1015554251 908 dbSNP
rs1391454900 909 dbSNP
rs1422996103 915 dbSNP
rs987696265 918 dbSNP
rs1311475971 919 dbSNP
rs1473883646 920 dbSNP
rs918415140 922 dbSNP
rs749163116 923 dbSNP
rs1353454109 926 dbSNP
rs534935466 927 dbSNP
rs1441637324 931 dbSNP
rs1276347314 939 dbSNP
rs557923134 943 dbSNP
rs1318608390 944 dbSNP
rs889561444 951 dbSNP
rs956842919 953 dbSNP
rs1273529032 955 dbSNP
rs1043381764 956 dbSNP
rs988520249 965 dbSNP
rs1284461272 973 dbSNP
rs1447678713 975 dbSNP
rs1339094627 976 dbSNP
rs1333860576 981 dbSNP
rs577751899 983 dbSNP
rs915266374 984 dbSNP
rs1253279751 986 dbSNP
rs1481119801 989 dbSNP
rs1181320727 992 dbSNP
rs537128818 995 dbSNP
rs1168558793 997 dbSNP
rs182808311 998 dbSNP
rs1414719102 1000 dbSNP
rs756828231 1007 dbSNP
rs1241031633 1008 dbSNP
rs1031944789 1010 dbSNP
rs1458142121 1017 dbSNP
rs188186351 1021 dbSNP
rs891944466 1025 dbSNP
rs1323009371 1032 dbSNP
rs1290079035 1035 dbSNP
rs1227374588 1040 dbSNP
rs980689676 1041 dbSNP
rs1014438815 1051 dbSNP
rs1024788936 1064 dbSNP
rs970172857 1066 dbSNP
rs778279053 1072 dbSNP
rs980068157 1073 dbSNP
rs1438632726 1090 dbSNP
rs1323053208 1106 dbSNP
rs1403782826 1106 dbSNP
rs939177073 1113 dbSNP
rs1056321519 1120 dbSNP
rs542107145 1135 dbSNP
rs1016937435 1141 dbSNP
rs908274237 1143 dbSNP
rs190970226 1148 dbSNP
rs1462216479 1151 dbSNP
rs1489458585 1157 dbSNP
rs1301730424 1162 dbSNP
rs1489690376 1163 dbSNP
rs962744970 1164 dbSNP
rs939798577 1167 dbSNP
rs972627514 1173 dbSNP
rs1038420723 1179 dbSNP
rs572293676 1180 dbSNP
rs1293835538 1188 dbSNP
rs1339825935 1189 dbSNP
rs1212583254 1193 dbSNP
rs1434431593 1203 dbSNP
rs996503555 1205 dbSNP
rs28581829 1206 dbSNP
rs1420027624 1220 dbSNP
rs1209707285 1229 dbSNP
rs1359652994 1231 dbSNP
rs1278230885 1253 dbSNP
rs1156751713 1264 dbSNP
rs1434808203 1265 dbSNP
rs564249922 1274 dbSNP
rs1190079361 1276 dbSNP
rs1009467716 1278 dbSNP
rs1479170807 1279 dbSNP
rs903509531 1280 dbSNP
rs1216867951 1281 dbSNP
rs1487795796 1290 dbSNP
rs1019125996 1293 dbSNP
rs1474753874 1296 dbSNP
rs533081169 1298 dbSNP
rs956983322 1299 dbSNP
rs1009659364 1303 dbSNP
rs892068229 1306 dbSNP
rs1022273177 1311 dbSNP
rs1024487666 1319 dbSNP
rs968031267 1330 dbSNP
rs316306 1331 dbSNP
rs781691781 1334 dbSNP
rs748482270 1335 dbSNP
rs1392650965 1341 dbSNP
rs960684043 1348 dbSNP
rs992371204 1351 dbSNP
rs962691501 1364 dbSNP
rs770225105 1367 dbSNP
rs760998304 1375 dbSNP
rs939725594 1381 dbSNP
rs529815491 1398 dbSNP
rs538193043 1403 dbSNP
rs972746676 1404 dbSNP
rs1313027392 1409 dbSNP
rs1183925530 1419 dbSNP
rs1038077714 1424 dbSNP
rs1025943222 1435 dbSNP
rs563304490 1436 dbSNP
rs1428607218 1438 dbSNP
rs768167231 1445 dbSNP
rs543536882 1451 dbSNP
rs1218147976 1456 dbSNP
rs1305943748 1458 dbSNP
rs528837290 1468 dbSNP
rs889339843 1469 dbSNP
rs987156678 1473 dbSNP
rs1009171756 1480 dbSNP
rs1450317900 1481 dbSNP
rs1402432117 1482 dbSNP
rs1170713191 1485 dbSNP
rs1218796110 1486 dbSNP
rs1464678533 1492 dbSNP
rs1370919935 1503 dbSNP
rs1166491158 1513 dbSNP
rs1301536894 1514 dbSNP
rs1255904448 1519 dbSNP
rs1040906351 1526 dbSNP
rs568187238 1527 dbSNP
rs979136259 1531 dbSNP
rs548165174 1548 dbSNP
rs1267360607 1549 dbSNP
rs575727069 1549 dbSNP
rs1321391082 1564 dbSNP
rs892645082 1565 dbSNP
rs143637899 1566 dbSNP
rs1445755230 1569 dbSNP
rs1022384107 1578 dbSNP
rs968146870 1581 dbSNP
rs759457228 1583 dbSNP
rs1390253912 1588 dbSNP
rs1002190086 1589 dbSNP
rs934976133 1595 dbSNP
rs1458072653 1597 dbSNP
rs1367585784 1598 dbSNP
rs1052112040 1602 dbSNP
rs1476044309 1605 dbSNP
rs1381409217 1610 dbSNP
rs35288506 1610 dbSNP
rs763365966 1610 dbSNP
rs566286049 1611 dbSNP
rs960883441 1614 dbSNP
rs370847277 1619 dbSNP
rs992092370 1620 dbSNP
rs1210561484 1621 dbSNP
rs908337442 1625 dbSNP
rs1250748857 1627 dbSNP
rs961233985 1628 dbSNP
rs1455337348 1629 dbSNP
rs1238241276 1630 dbSNP
rs906013421 1632 dbSNP
rs1302741089 1638 dbSNP
rs1364492658 1644 dbSNP
rs1300917926 1645 dbSNP
rs1173689860 1650 dbSNP
rs1361561782 1651 dbSNP
rs1379178206 1652 dbSNP
rs771100813 1658 dbSNP
rs1398835872 1659 dbSNP
rs919665888 1661 dbSNP
rs1469033762 1667 dbSNP
rs1001733440 1669 dbSNP
rs769677861 1678 dbSNP
rs1432678446 1679 dbSNP
rs932417325 1681 dbSNP
rs774357914 1682 dbSNP
rs759760553 1687 dbSNP
rs994540763 1688 dbSNP
rs1435474966 1698 dbSNP
rs1025635541 1703 dbSNP
rs955598551 1704 dbSNP
rs1323728148 1708 dbSNP
rs1257724312 1720 dbSNP
rs1233264128 1725 dbSNP
rs528746008 1728 dbSNP
rs1344301946 1735 dbSNP
rs146772680 1746 dbSNP
rs1401424586 1748 dbSNP
rs571481964 1750 dbSNP
rs1318013249 1757 dbSNP
rs1129531 1761 dbSNP
rs963817047 1765 dbSNP
rs1173686476 1772 dbSNP
rs892748320 1778 dbSNP
rs924995563 1788 dbSNP
rs956463856 1790 dbSNP
rs945506730 1794 dbSNP
rs1478259886 1795 dbSNP
rs1043945176 1796 dbSNP
rs1129532 1798 dbSNP
rs903909123 1802 dbSNP
rs1225909525 1804 dbSNP
rs1445076661 1806 dbSNP
rs1258074100 1808 dbSNP
rs756598729 1810 dbSNP
rs1322780874 1813 dbSNP
rs1421085744 1817 dbSNP
rs1219956602 1822 dbSNP
rs1318122076 1825 dbSNP
rs1335356689 1825 dbSNP
rs138993929 1825 dbSNP
rs749363558 1825 dbSNP
rs767773387 1825 dbSNP
rs1491474806 1826 dbSNP
rs557126766 1827 dbSNP
rs1033639264 1828 dbSNP
rs896493734 1830 dbSNP
rs1255336606 1842 dbSNP
rs1473933374 1843 dbSNP
rs773564797 1843 dbSNP
rs1027509552 1844 dbSNP
rs1231747128 1845 dbSNP
rs182805986 1846 dbSNP
rs1460777065 1849 dbSNP
rs1241230258 1855 dbSNP
rs1470799122 1857 dbSNP
rs2460427 1862 dbSNP
rs1408627190 1863 dbSNP
rs536288331 1865 dbSNP
rs1460895421 1866 dbSNP
rs1358079168 1875 dbSNP
rs917591049 1880 dbSNP
rs1381181000 1882 dbSNP
rs1162508701 1883 dbSNP
rs117490174 1889 dbSNP
rs1326975378 1892 dbSNP
rs1129541 1894 dbSNP
rs1407269311 1895 dbSNP
rs1129542 1899 dbSNP
rs1391749713 1902 dbSNP
rs1163936613 1915 dbSNP
rs1443783596 1922 dbSNP
rs1462128736 1923 dbSNP
rs572396572 1927 dbSNP
rs541303781 1929 dbSNP
rs1140143 1933 dbSNP
rs949098444 1940 dbSNP
rs187467471 1947 dbSNP
rs1129546 1949 dbSNP
rs1015492356 1961 dbSNP
rs961620758 1967 dbSNP
rs973848880 1968 dbSNP
rs1222131955 1971 dbSNP
rs1357763289 1971 dbSNP
rs1312000768 1979 dbSNP
rs1241463042 1981 dbSNP
rs760516665 1982 dbSNP
rs1373308851 1986 dbSNP
rs1277799141 1988 dbSNP
rs1438739638 1991 dbSNP
rs1026796402 1993 dbSNP
rs1129529 2001 dbSNP
rs953758676 2002 dbSNP
rs577871886 2003 dbSNP
rs1129547 2004 dbSNP
rs912336794 2007 dbSNP
rs1335910869 2013 dbSNP
rs927545376 2018 dbSNP
rs937451759 2019 dbSNP
rs1038553886 2020 dbSNP
rs1047476 2023 dbSNP
rs1213860098 2024 dbSNP
rs543508069 2028 dbSNP
rs994258840 2031 dbSNP
rs1478728932 2033 dbSNP
rs1269086297 2038 dbSNP
rs563287344 2039 dbSNP
rs1216981176 2042 dbSNP
rs1205974444 2047 dbSNP
rs1233004903 2048 dbSNP
rs1316800903 2058 dbSNP
rs1474814111 2063 dbSNP
rs1282773186 2067 dbSNP
rs1220962024 2073 dbSNP
rs1368377880 2083 dbSNP
rs914144310 2088 dbSNP
rs1419675056 2089 dbSNP
rs945622315 2100 dbSNP
rs192514553 2101 dbSNP
rs1167172276 2112 dbSNP
rs1342670345 2118 dbSNP
rs184596184 2119 dbSNP
rs1431247901 2121 dbSNP
rs559280849 2124 dbSNP
rs1344468488 2125 dbSNP
rs766154326 2130 dbSNP
rs1411913137 2132 dbSNP
rs1329565418 2133 dbSNP
rs1156859245 2137 dbSNP
rs1416165131 2141 dbSNP
rs1008658059 2159 dbSNP
rs938043886 2167 dbSNP
rs552418974 2169 dbSNP
rs896587676 2172 dbSNP
rs1013575554 2173 dbSNP
rs1187401873 2180 dbSNP
rs528783000 2189 dbSNP
rs1016024792 2196 dbSNP
rs1240778617 2204 dbSNP
rs1218402433 2211 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084042. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep2 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugacGUCGGAACUGGAGGGUc 5'
              || |||  :||||||| 
Target 5' ugccCA-CCUCAGCCUCCCAa 3'
2 - 21
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760630. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  :||||||| 
Target 5' acUGCAACCUCUGCCUCCCAg 3'
11 - 31
Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1084042
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep2
Location of target site ENST00000415001.2 | 3UTR | UUGCCCACCUCAGCCUCCCAAAGUGCUGGGAUUACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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