pre-miRNA Information
pre-miRNA hsa-mir-23a   
Genomic Coordinates chr19: 13836587 - 13836659
Synonyms MIRN23A, hsa-mir-23a, miRNA23A, MIR23A
Description Homo sapiens miR-23a stem-loop
Comment This miRNA was previously named miR-23 . This finding was later retracted after the discovery that the regulated gene was human homolog of ES1 (HES1), whose function is unknown.
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-23a-5p
Sequence 9| GGGGUUCCUGGGGAUGGGAUUU |30
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs748509260 12 dbSNP
rs1205403719 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SYK   
Synonyms p72-Syk
Description spleen associated tyrosine kinase
Transcript NM_001135052   
Other Transcripts NM_001174167 , NM_001174168 , NM_003177   
Expression
Putative miRNA Targets on SYK
3'UTR of SYK
(miRNA target sites are highlighted)
>SYK|NM_001135052|3'UTR
   1 CCGCTCCCGCACCTGTCGGTGGCTGCCTTTGATCACAGGAGCAATCACAGGAAAATGTATCCAGAGGAATTGATTGTCAG
  81 CCACCTCCCTCTGCCAGTCGGGAGAGCCAGGCTTGGATGGAACATGCCCACAACTTGTCACCCAAAGCCTGTCCCAGGAC
 161 TCACCCTCCACAAAGCAAAGGCAGTCCCGGGAGAAAAGACGGATGGCAGGATCCAAGGGGCTAGCTGGATTTGTTTGTTT
 241 TCTTGTCTGTGTGATTTTCATACAGGTTATTTTTACGATCTGTTTCCAAATCCCTTTCATGTCTTTCCACTTCTCTGGGT
 321 CCCGGGGTGCATTTGTTACTCATCGGGCCCAGGGACATTGCAGAGTGGCCTAGAGCACTCTCACCCCAAGCGGCCTTTTC
 401 CAAATGCCCAAGGATGCCTTAGCATGTGACTCCTGAAGGGAAGGCAAAGGCAGAGGAATTTGGCTGCTTCTACGGCCATG
 481 AGACTGATCCCTGGCCACTGAAAAGCTTTCCTGACAATAAAAATGTTTTGAGGCTTTAAAAAGAAAATCAAGTTTGACCA
 561 GTGCAGTTTCTAAGCATGTAGCCAGTTAAGGAAAGAAAGAAAGAAAAAAAAAAAAGGCCTGGATACTGCTTTTGCTGTCT
 641 CTGTTATGAGATGGAAGACTTACATGTTTGTGATAAAAGGGGACCATGAGAATGAATTGGCTTGGCTTACTTTCCCCCTG
 721 AAATCCTCTCTCCTGCAGACTGTCTTGAAGACCTGGTGACTGGTAAATAAAGCCCTGCATGGAGGCTGCACAGCAGGGGC
 801 AAGAGGCCCATCCCCCAGCATCTCACTGAGGACAGCTTCAGGCTGCCTTCCTCTGAACGTGGTCCACACCTTCCTCTCCT
 881 CCACAGAGAGGGTGCCGCCAGAATCCCCTGTCGCTTTCTGTGTCTGCAATGGGGGGCAGCACAGGGATCAAAGCCATCTA
 961 AAGAGTTTCCAAAGAAAGTATTAATTCAGAACAAGCCAAAGACCCTGAGCCTCACCACAAACAGGCCTTTTGGAGTGTGA
1041 ATTTGAGTTGAAGATACAAGATCGGAGAATGATTTTCTGGTCTTAACTAATCCTCATCTTCATGTTTGATCTTTAAGAAG
1121 TCATCACCCATTGATTTCAGTTTTGCTGTACCTCTTGAAAGTTAAAGAGACATCTCAGCACTTTAGGAGGCCGAGGCGGG
1201 TGGATCACTTGAGGTAAGGAGTTTGAGACTAGCCTGGCCAATATGGTAAAACCCCATCTCTACTAAAAATACAAAAATTA
1281 GCCGGGCATGGTGGCATGTGTCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAAACGG
1361 AGGTCGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCTTGGGCATCACAGCGAGACTCTGTCAAAACAAACAAACAAA
1441 AAAACAACTTAAAGAGGTAATTTAGCCATCATTCTTATGCCAGCAGATATAAATAAACTTGGACCCATCTGGTCTTCAGC
1521 TAAACCTGAGACATTTTAAAGTGCATGGACAGCCATGGACAGCAGGCCCTCCTCTAACAGGGGATGCAAGGCATGGAGAA
1601 AGACAATCAGTACCCAAGCTCAGCCACAGAAGACAGGAGTCACTCATATAACTTGTGTTTAGAAGTTTTTGGTAGCCACG
1681 CACACTTTCTGAAATCACACTATCTGGTGGTTTAATCATATTTTTAAAGACAGAATCCCTGAGTGCTGAGCAGATTCTCA
1761 AAACACATTTAGAATCCCTGAAATTAGAAAGATCAATGACAAAATATCTGTCAGCCAGGCCACAAACAGGTGTAAAATTA
1841 TGAAAGGAGTGGTTGGATGTGCCAAGTTTGGTAAAGTGGTGACTGCATCTGAGAAAGAGGCTGTGAGGCTGAACTCTTGG
1921 TGGCTTCCTTCTGTAACTTCCAGAGGGAGTCTTCAACACAGGCCCCGTGCTCGTAGGAATACGGTAGCACCTATGTAGGA
2001 AGTGCGTGGAGTTTTCTGTCTTCTTTCTGTGTGATTTTTGGCCTTTTTATCAGCACTTCTCCCCTCCCAGGAGCCTGGGG
2081 ATGCCAAACATCCAGAATGTGATGGGACAAGATGGGGGCAGGGGCCTCACCTCCCTGCAGAGGTCCGGCCAGGTCTCCTT
2161 GTCCCTGGACAATCTCCTGAGCCTCTCTGCTTGGTGGAGCAGGCACCTGTGTGCAGAATTCCCACTGTGGCCAGCACGAG
2241 GAAGTCTTTTCTAGTGAAAATGTGTCTTGTGGTCAGGAATAATTATCCTTTCCCCTGTAGCCACCAAGGAGGGCAAATAG
2321 AGAAAGGTAACCTAATTGAAGGATTGGTCATGTGAAAAGGGCTACATTTGGGAAGCTGGGAAAGGCCTCCAGGCTTCTAG
2401 AGCAGCTAGCTTGGGCTGGATTCTCATACCCAGGCTGCCCCTTGGATTGTTCTACCCAAGCTTTTCCCTGGGGTCTGGGC
2481 TCACTCCATAAGGTAAGGTGCCTTTTACCTTATGGTCCTTCTTTAGCAGGTAACAAAGGAGCATCAGGGGCAGGCTGCCC
2561 TGGTGGCATCACACTGGCTAGTGAGGCCGTGAATATCTTGTCCCCCAGCAGGGCCGACAGTTTCTATCACAGAAAACAGT
2641 GTGTTCAGTGGTGAAAATCGTTGCATGCATGTTTTCATCTGAGCGTGTCCTTCTCCCATACTCCCTATCAGCCAGCCCTG
2721 CCTGTAGCTGCTGTATGGTGATTGCACTTGGACATCAGTCCAATGACTGCAAGTCGGCCTGGATTTTCACTTGCAGAGGC
2801 TACAGCTGCATTGTCAGGTCTCCCAGCCCTGCAGAGAGCTCCCTCCACTGGTTAGCAGTGTGTTGTGTTTTCCATTCATT
2881 TCAGAAGAGCTACATTGTGTCACTGGACATTTTTAAAAACTGTGATTTTTAATAAAAATTTAAAATTTGCTTTGTGATGA
2961 AAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuuAGGGUAGGGGUCCUUGGGg 5'
             |||| | |||||||:||: 
Target 5' ttcTCCCCT-CCCAGGAGCCTg 3'
2057 - 2077 142.00 -25.30
2
miRNA  3' uuUAGGGUAGGGGUCCU---UGGGg 5'
            | ||::| |||||||   |||| 
Target 5' aaAGCCTGT-CCCAGGACTCACCCt 3'
144 - 167 123.00 -22.70
3
miRNA  3' uuuaggguaggggucCUUGGGg 5'
                         |||||| 
Target 5' gcaggagaatcgcttGAACCCa 3'
1331 - 1352 120.00 -12.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30708586 3 COSMIC
COSN30190020 19 COSMIC
COSN31492694 26 COSMIC
COSN31612466 77 COSMIC
COSN31504324 109 COSMIC
COSN31498875 148 COSMIC
COSN25749120 159 COSMIC
COSN20076583 231 COSMIC
COSN28875523 277 COSMIC
COSN14793089 467 COSMIC
COSN14782726 475 COSMIC
COSN14753677 973 COSMIC
COSN24191760 992 COSMIC
COSN27085062 1367 COSMIC
COSN9527495 1487 COSMIC
COSN2333347 1875 COSMIC
COSN23822818 2296 COSMIC
COSN14867368 2430 COSMIC
COSN2333348 2518 COSMIC
COSN21973991 2592 COSMIC
COSN24910293 2883 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs201520390 3 dbSNP
rs199607948 4 dbSNP
rs778731573 5 dbSNP
rs1457238634 6 dbSNP
rs1222275772 7 dbSNP
rs745620497 9 dbSNP
rs1234149782 10 dbSNP
rs758264283 12 dbSNP
rs1190207340 14 dbSNP
rs1263472543 16 dbSNP
rs1478632936 18 dbSNP
rs779559674 19 dbSNP
rs746731466 22 dbSNP
rs547503549 26 dbSNP
rs201191948 27 dbSNP
rs201001425 35 dbSNP
rs776140226 38 dbSNP
rs202243160 42 dbSNP
rs574398868 43 dbSNP
rs1392684169 60 dbSNP
rs1354773466 69 dbSNP
rs200070739 71 dbSNP
rs540216391 83 dbSNP
rs201179148 96 dbSNP
rs202035242 100 dbSNP
rs191082286 101 dbSNP
rs1391918359 107 dbSNP
rs201474800 118 dbSNP
rs1184776812 126 dbSNP
rs1485412770 130 dbSNP
rs202088785 135 dbSNP
rs1237850164 138 dbSNP
rs1211000607 144 dbSNP
rs1344711243 148 dbSNP
rs992543162 158 dbSNP
rs1405468746 160 dbSNP
rs1343012253 161 dbSNP
rs1213340457 167 dbSNP
rs1024996265 180 dbSNP
rs200443955 182 dbSNP
rs1416195871 183 dbSNP
rs1373220496 188 dbSNP
rs201367588 189 dbSNP
rs113175204 190 dbSNP
rs200786369 201 dbSNP
rs201177252 202 dbSNP
rs1168157562 209 dbSNP
rs199644752 216 dbSNP
rs56139234 221 dbSNP
rs1804251 227 dbSNP
rs910938525 230 dbSNP
rs201615361 241 dbSNP
rs200080967 250 dbSNP
rs891893278 253 dbSNP
rs1010304574 259 dbSNP
rs1021644066 261 dbSNP
rs1308271353 264 dbSNP
rs200817268 266 dbSNP
rs182865904 267 dbSNP
rs1483391047 272 dbSNP
rs758952512 278 dbSNP
rs1202988416 284 dbSNP
rs1307452659 287 dbSNP
rs187420975 289 dbSNP
rs1235494089 304 dbSNP
rs1041096071 311 dbSNP
rs551097164 314 dbSNP
rs199888968 322 dbSNP
rs201168587 323 dbSNP
rs992416967 324 dbSNP
rs1049164 325 dbSNP
rs1047927148 329 dbSNP
rs888035561 331 dbSNP
rs1350374479 332 dbSNP
rs1167064144 333 dbSNP
rs199927091 343 dbSNP
rs961183687 345 dbSNP
rs972517998 346 dbSNP
rs1416916092 358 dbSNP
rs919668890 360 dbSNP
rs1006315402 361 dbSNP
rs1033825246 364 dbSNP
rs930981405 371 dbSNP
rs1419930779 375 dbSNP
rs1049365339 380 dbSNP
rs1175537922 381 dbSNP
rs1480374036 386 dbSNP
rs774677742 387 dbSNP
rs1185405742 388 dbSNP
rs200937477 392 dbSNP
rs1419660209 393 dbSNP
rs911481197 400 dbSNP
rs1013706696 403 dbSNP
rs202179400 416 dbSNP
rs944274595 417 dbSNP
rs200478377 418 dbSNP
rs41309340 421 dbSNP
rs1161343831 434 dbSNP
rs1318373544 435 dbSNP
rs1041268463 439 dbSNP
rs201184094 441 dbSNP
rs1367774154 446 dbSNP
rs202018238 451 dbSNP
rs1327770956 453 dbSNP
rs1032233649 458 dbSNP
rs1393407315 463 dbSNP
rs538566014 464 dbSNP
rs14979 467 dbSNP
rs1324597363 469 dbSNP
rs1157284690 470 dbSNP
rs1804252 471 dbSNP
rs201236332 474 dbSNP
rs41313849 475 dbSNP
rs1195973412 493 dbSNP
rs1001961976 499 dbSNP
rs34237652 501 dbSNP
rs1467546532 503 dbSNP
rs1252704601 506 dbSNP
rs3087507 515 dbSNP
rs1034327976 517 dbSNP
rs1487077278 521 dbSNP
rs113304691 523 dbSNP
rs1237949382 534 dbSNP
rs201054834 537 dbSNP
rs3087508 538 dbSNP
rs1305033736 543 dbSNP
rs3087506 544 dbSNP
rs770654926 552 dbSNP
rs1024895493 557 dbSNP
rs199807708 559 dbSNP
rs1383705773 570 dbSNP
rs1382592698 571 dbSNP
rs778652682 572 dbSNP
rs1287276898 587 dbSNP
rs1359115641 591 dbSNP
rs1175619759 596 dbSNP
rs1223712374 596 dbSNP
rs1292527271 600 dbSNP
rs113920845 604 dbSNP
rs1340912853 604 dbSNP
rs200854897 604 dbSNP
rs57651872 604 dbSNP
rs757779999 604 dbSNP
rs929609351 605 dbSNP
rs201993887 608 dbSNP
rs1346614766 612 dbSNP
rs1270686820 614 dbSNP
rs1229541160 618 dbSNP
rs919678436 622 dbSNP
rs952471450 631 dbSNP
rs1450808104 636 dbSNP
rs199584610 637 dbSNP
rs745609905 638 dbSNP
rs113580142 639 dbSNP
rs942307586 641 dbSNP
rs201935229 648 dbSNP
rs200082519 659 dbSNP
rs1432938023 663 dbSNP
rs943684016 667 dbSNP
rs750899667 682 dbSNP
rs200996064 689 dbSNP
rs1374985559 692 dbSNP
rs554410647 696 dbSNP
rs192822491 706 dbSNP
rs913476127 711 dbSNP
rs1476693026 713 dbSNP
rs201640049 715 dbSNP
rs533583017 716 dbSNP
rs1043165956 717 dbSNP
rs199893313 718 dbSNP
rs201228319 719 dbSNP
rs1259178050 721 dbSNP
rs202208832 734 dbSNP
rs200250756 747 dbSNP
rs1056267099 750 dbSNP
rs999504695 752 dbSNP
rs200788246 753 dbSNP
rs895857361 758 dbSNP
rs201901573 760 dbSNP
rs1014257359 780 dbSNP
rs576730941 792 dbSNP
rs957927703 801 dbSNP
rs200306296 812 dbSNP
rs1382278249 817 dbSNP
rs1024905329 822 dbSNP
rs961245972 825 dbSNP
rs545725831 826 dbSNP
rs1018522041 828 dbSNP
rs1354824446 830 dbSNP
rs1329651033 833 dbSNP
rs1411776021 840 dbSNP
rs565531951 841 dbSNP
rs1167918811 851 dbSNP
rs201170015 859 dbSNP
rs199593787 860 dbSNP
rs200233293 866 dbSNP
rs1183317423 873 dbSNP
rs952639280 874 dbSNP
rs1214308242 886 dbSNP
rs201530364 888 dbSNP
rs985251442 893 dbSNP
rs1223660561 894 dbSNP
rs199757614 898 dbSNP
rs909578520 901 dbSNP
rs200639366 905 dbSNP
rs201656525 913 dbSNP
rs140271666 914 dbSNP
rs942286216 915 dbSNP
rs1334122515 916 dbSNP
rs965104774 929 dbSNP
rs976351413 930 dbSNP
rs1242033942 931 dbSNP
rs200271297 932 dbSNP
rs201996237 934 dbSNP
rs1461292246 935 dbSNP
rs1408219848 936 dbSNP
rs946275772 945 dbSNP
rs199910798 947 dbSNP
rs201033897 948 dbSNP
rs530187865 954 dbSNP
rs916828055 959 dbSNP
rs201904421 960 dbSNP
rs200062335 966 dbSNP
rs158688 973 dbSNP
rs1251120084 974 dbSNP
rs768604317 975 dbSNP
rs201766681 992 dbSNP
rs1447434420 995 dbSNP
rs1285206715 1006 dbSNP
rs184864847 1007 dbSNP
rs201197144 1016 dbSNP
rs1308665942 1019 dbSNP
rs202205240 1020 dbSNP
rs1405522740 1027 dbSNP
rs1235591012 1038 dbSNP
rs1396811910 1040 dbSNP
rs1324513320 1050 dbSNP
rs950034850 1051 dbSNP
rs1336413674 1057 dbSNP
rs200418572 1064 dbSNP
rs201475559 1065 dbSNP
rs376917555 1066 dbSNP
rs202172624 1069 dbSNP
rs12344755 1071 dbSNP
rs893851024 1075 dbSNP
rs1393190674 1085 dbSNP
rs1192996079 1088 dbSNP
rs1475587540 1091 dbSNP
rs158687 1097 dbSNP
rs1018156772 1112 dbSNP
rs1445521648 1120 dbSNP
rs1285633479 1121 dbSNP
rs199614233 1128 dbSNP
rs1211643595 1129 dbSNP
rs74847439 1130 dbSNP
rs1350228945 1131 dbSNP
rs965687140 1134 dbSNP
rs138070207 1139 dbSNP
rs1025920438 1146 dbSNP
rs10512203 1153 dbSNP
rs113367349 1155 dbSNP
rs1359467508 1160 dbSNP
rs1313185827 1164 dbSNP
rs1016642924 1167 dbSNP
rs1436962027 1173 dbSNP
rs200684900 1191 dbSNP
rs201846169 1193 dbSNP
rs1253754566 1194 dbSNP
rs158686 1198 dbSNP
rs200678129 1199 dbSNP
rs201507403 1201 dbSNP
rs1188988021 1202 dbSNP
rs1486660299 1204 dbSNP
rs1278288164 1211 dbSNP
rs1209981821 1214 dbSNP
rs199954919 1217 dbSNP
rs201129087 1219 dbSNP
rs1275770780 1223 dbSNP
rs1213176835 1228 dbSNP
rs202170530 1231 dbSNP
rs1340363480 1234 dbSNP
rs200092376 1244 dbSNP
rs1416252296 1248 dbSNP
rs552124604 1248 dbSNP
rs201067892 1249 dbSNP
rs202049478 1256 dbSNP
rs967000556 1259 dbSNP
rs979078623 1261 dbSNP
rs200169491 1263 dbSNP
rs201483217 1264 dbSNP
rs202087399 1265 dbSNP
rs1356170681 1266 dbSNP
rs1352781289 1270 dbSNP
rs1168315539 1277 dbSNP
rs1464894425 1279 dbSNP
rs192259837 1281 dbSNP
rs201450125 1284 dbSNP
rs752057731 1285 dbSNP
rs917359788 1298 dbSNP
rs1181330821 1299 dbSNP
rs1234815234 1306 dbSNP
rs1481039195 1308 dbSNP
rs1235089458 1311 dbSNP
rs755571978 1317 dbSNP
rs199763889 1320 dbSNP
rs200961449 1321 dbSNP
rs868791517 1332 dbSNP
rs1234697977 1333 dbSNP
rs942687750 1333 dbSNP
rs1205509653 1338 dbSNP
rs1276494265 1341 dbSNP
rs201471258 1342 dbSNP
rs897851867 1343 dbSNP
rs1374951899 1346 dbSNP
rs1268007745 1359 dbSNP
rs199623121 1360 dbSNP
rs200404562 1366 dbSNP
rs158685 1367 dbSNP
rs1459721989 1368 dbSNP
rs753432399 1370 dbSNP
rs200068159 1375 dbSNP
rs200689319 1377 dbSNP
rs138672587 1382 dbSNP
rs900942352 1387 dbSNP
rs1177274332 1396 dbSNP
rs183960220 1397 dbSNP
rs1254238465 1399 dbSNP
rs189425165 1401 dbSNP
rs1467465624 1403 dbSNP
rs1264476472 1405 dbSNP
rs967052825 1408 dbSNP
rs756737143 1412 dbSNP
rs142720783 1414 dbSNP
rs199842566 1415 dbSNP
rs1389072592 1421 dbSNP
rs201341496 1423 dbSNP
rs1024419605 1426 dbSNP
rs201770050 1433 dbSNP
rs1325403172 1435 dbSNP
rs1239274167 1438 dbSNP
rs1371612724 1438 dbSNP
rs1305588352 1443 dbSNP
rs1438426855 1444 dbSNP
rs970996875 1445 dbSNP
rs199924149 1446 dbSNP
rs368223574 1446 dbSNP
rs200933262 1447 dbSNP
rs202178674 1449 dbSNP
rs935451973 1451 dbSNP
rs917450436 1452 dbSNP
rs200488395 1454 dbSNP
rs562474304 1456 dbSNP
rs1356955935 1459 dbSNP
rs560269679 1469 dbSNP
rs971536845 1487 dbSNP
rs989660254 1504 dbSNP
rs1221495892 1506 dbSNP
rs1265853896 1520 dbSNP
rs972181614 1524 dbSNP
rs201111768 1526 dbSNP
rs915305510 1544 dbSNP
rs771796610 1546 dbSNP
rs202189825 1547 dbSNP
rs548151667 1548 dbSNP
rs371047374 1550 dbSNP
rs115363876 1551 dbSNP
rs901201852 1557 dbSNP
rs779881560 1567 dbSNP
rs192548937 1569 dbSNP
rs199783989 1572 dbSNP
rs1392284421 1579 dbSNP
rs184355645 1581 dbSNP
rs1330260318 1582 dbSNP
rs997969105 1583 dbSNP
rs201058837 1602 dbSNP
rs1383758989 1605 dbSNP
rs189146244 1615 dbSNP
rs570551098 1618 dbSNP
rs199768164 1627 dbSNP
rs1005320887 1629 dbSNP
rs1176001169 1630 dbSNP
rs1459883830 1636 dbSNP
rs181141508 1640 dbSNP
rs201774920 1647 dbSNP
rs902901673 1648 dbSNP
rs1194316893 1663 dbSNP
rs1430705294 1665 dbSNP
rs186279193 1671 dbSNP
rs1192498449 1676 dbSNP
rs200592316 1677 dbSNP
rs999883264 1679 dbSNP
rs1322079570 1680 dbSNP
rs776553047 1681 dbSNP
rs201934148 1685 dbSNP
rs1251861634 1688 dbSNP
rs200079558 1703 dbSNP
rs1276471909 1704 dbSNP
rs1023972030 1705 dbSNP
rs1313146713 1711 dbSNP
rs112868894 1715 dbSNP
rs1314862651 1716 dbSNP
rs1236714457 1719 dbSNP
rs1402080778 1725 dbSNP
rs998539411 1732 dbSNP
rs1024559340 1744 dbSNP
rs1031229769 1747 dbSNP
rs1421942644 1749 dbSNP
rs1169468358 1755 dbSNP
rs1475344910 1772 dbSNP
rs201711043 1782 dbSNP
rs1259244811 1783 dbSNP
rs971590802 1784 dbSNP
rs1184744189 1787 dbSNP
rs956960942 1801 dbSNP
rs199822713 1802 dbSNP
rs201323598 1805 dbSNP
rs1209408573 1807 dbSNP
rs1197494647 1808 dbSNP
rs202054985 1822 dbSNP
rs200437396 1826 dbSNP
rs17568705 1834 dbSNP
rs201899168 1835 dbSNP
rs200311317 1851 dbSNP
rs554920961 1853 dbSNP
rs1286215235 1855 dbSNP
rs1242691261 1856 dbSNP
rs1340006754 1863 dbSNP
rs1330064254 1865 dbSNP
rs201177408 1869 dbSNP
rs35758629 1873 dbSNP
rs1398497680 1880 dbSNP
rs199604777 1888 dbSNP
rs915439210 1890 dbSNP
rs964151731 1898 dbSNP
rs200219989 1899 dbSNP
rs574978587 1900 dbSNP
rs1363877058 1901 dbSNP
rs1183848607 1905 dbSNP
rs1456401917 1909 dbSNP
rs201716941 1915 dbSNP
rs199714639 1921 dbSNP
rs933957737 1925 dbSNP
rs1425932913 1934 dbSNP
rs1047072699 1939 dbSNP
rs1157510253 1940 dbSNP
rs908450537 1940 dbSNP
rs941311151 1949 dbSNP
rs1242468222 1951 dbSNP
rs1411905878 1957 dbSNP
rs540465583 1959 dbSNP
rs1309266331 1960 dbSNP
rs148015317 1967 dbSNP
rs200634194 1968 dbSNP
rs1012755750 1969 dbSNP
rs201655256 1974 dbSNP
rs906963322 1975 dbSNP
rs998499011 1976 dbSNP
rs1031365040 1977 dbSNP
rs199537078 1980 dbSNP
rs1244795210 1983 dbSNP
rs371399205 1983 dbSNP
rs1389480548 1984 dbSNP
rs200782311 1985 dbSNP
rs1285270310 1987 dbSNP
rs201768739 1995 dbSNP
rs943382609 1996 dbSNP
rs1039632018 2004 dbSNP
rs199976134 2006 dbSNP
rs933829888 2007 dbSNP
rs545867097 2030 dbSNP
rs200655648 2036 dbSNP
rs1235680153 2052 dbSNP
rs1370126437 2055 dbSNP
rs1011194228 2060 dbSNP
rs1022458172 2061 dbSNP
rs202076504 2064 dbSNP
rs1299730280 2065 dbSNP
rs10217275 2072 dbSNP
rs200864082 2074 dbSNP
rs111798674 2075 dbSNP
rs1000382641 2079 dbSNP
rs201771764 2088 dbSNP
rs1054191805 2090 dbSNP
rs922656609 2090 dbSNP
rs199911137 2091 dbSNP
rs1196128905 2092 dbSNP
rs982735823 2093 dbSNP
rs200984283 2095 dbSNP
rs1262612215 2099 dbSNP
rs202058374 2100 dbSNP
rs1314438981 2102 dbSNP
rs200440991 2104 dbSNP
rs1219004789 2106 dbSNP
rs1340576021 2115 dbSNP
rs542111360 2116 dbSNP
rs766840844 2117 dbSNP
rs941280108 2119 dbSNP
rs1024570748 2123 dbSNP
rs561832367 2125 dbSNP
rs1426504082 2126 dbSNP
rs115781501 2129 dbSNP
rs202241782 2136 dbSNP
rs200430210 2147 dbSNP
rs201413796 2148 dbSNP
rs985320918 2150 dbSNP
rs1410263453 2153 dbSNP
rs1425507914 2154 dbSNP
rs906928589 2156 dbSNP
rs1476979668 2158 dbSNP
rs1460184520 2159 dbSNP
rs1188711947 2162 dbSNP
rs199603436 2174 dbSNP
rs200481350 2182 dbSNP
rs1236217972 2186 dbSNP
rs1210047789 2190 dbSNP
rs998631704 2198 dbSNP
rs1052760872 2199 dbSNP
rs201775735 2201 dbSNP
rs199695443 2207 dbSNP
rs892844381 2210 dbSNP
rs1011248203 2211 dbSNP
rs200815743 2231 dbSNP
rs1411527033 2232 dbSNP
rs1281306729 2233 dbSNP
rs1302121797 2234 dbSNP
rs976018111 2235 dbSNP
rs1442869835 2236 dbSNP
rs114553487 2238 dbSNP
rs933881368 2243 dbSNP
rs199914885 2247 dbSNP
rs1423179487 2250 dbSNP
rs569674711 2252 dbSNP
rs200680066 2253 dbSNP
rs201514338 2263 dbSNP
rs199958969 2277 dbSNP
rs1314133676 2280 dbSNP
rs1425575036 2297 dbSNP
rs924464466 2299 dbSNP
rs1411726584 2308 dbSNP
rs200795833 2310 dbSNP
rs535058819 2319 dbSNP
rs73650275 2324 dbSNP
rs1029862700 2337 dbSNP
rs1240617343 2361 dbSNP
rs1197138967 2362 dbSNP
rs1457643407 2369 dbSNP
rs1273360500 2380 dbSNP
rs1223316089 2386 dbSNP
rs1054646257 2390 dbSNP
rs1311413187 2391 dbSNP
rs368631722 2393 dbSNP
rs200073109 2394 dbSNP
rs201185795 2402 dbSNP
rs202006211 2404 dbSNP
rs982869899 2405 dbSNP
rs1294271543 2411 dbSNP
rs768017150 2414 dbSNP
rs1348406756 2415 dbSNP
rs1483588477 2424 dbSNP
rs386736223 2427 dbSNP
rs753172240 2427 dbSNP
rs13559 2428 dbSNP
rs72729087 2430 dbSNP
rs1191233670 2432 dbSNP
rs201467820 2436 dbSNP
rs915789234 2437 dbSNP
rs202131391 2438 dbSNP
rs1192516243 2441 dbSNP
rs200305022 2445 dbSNP
rs576992452 2447 dbSNP
rs1215881602 2449 dbSNP
rs1355305309 2455 dbSNP
rs201342619 2460 dbSNP
rs928519101 2462 dbSNP
rs1426359821 2469 dbSNP
rs1167591435 2472 dbSNP
rs1370869370 2473 dbSNP
rs934393546 2474 dbSNP
rs1431435662 2492 dbSNP
rs993777164 2494 dbSNP
rs199804824 2498 dbSNP
rs200863208 2509 dbSNP
rs201618755 2510 dbSNP
rs199633431 2516 dbSNP
rs117866558 2517 dbSNP
rs201616726 2519 dbSNP
rs199774700 2526 dbSNP
rs141926409 2531 dbSNP
rs1378764958 2540 dbSNP
rs1289668689 2541 dbSNP
rs1297182167 2546 dbSNP
rs1431872566 2548 dbSNP
rs1266218749 2551 dbSNP
rs201639704 2552 dbSNP
rs199863553 2553 dbSNP
rs201200597 2567 dbSNP
rs1343254787 2569 dbSNP
rs1488947937 2589 dbSNP
rs201761264 2590 dbSNP
rs1345591167 2607 dbSNP
rs199956562 2616 dbSNP
rs200907814 2617 dbSNP
rs966665249 2624 dbSNP
rs977347576 2625 dbSNP
rs997144165 2627 dbSNP
rs924543036 2630 dbSNP
rs202165739 2631 dbSNP
rs200362937 2639 dbSNP
rs1399524556 2642 dbSNP
rs935840090 2645 dbSNP
rs201255894 2646 dbSNP
rs1305173589 2648 dbSNP
rs202010594 2661 dbSNP
rs200244210 2668 dbSNP
rs1170902146 2670 dbSNP
rs201537770 2671 dbSNP
rs199792221 2678 dbSNP
rs1442550805 2679 dbSNP
rs200278333 2682 dbSNP
rs1258108839 2684 dbSNP
rs189965276 2685 dbSNP
rs199848843 2686 dbSNP
rs1220286689 2690 dbSNP
rs1450998759 2691 dbSNP
rs562048477 2692 dbSNP
rs1320227671 2696 dbSNP
rs974461425 2699 dbSNP
rs1022995167 2701 dbSNP
rs1218081951 2703 dbSNP
rs200863059 2704 dbSNP
rs1336646866 2716 dbSNP
rs1394836984 2721 dbSNP
rs1401883571 2728 dbSNP
rs367775503 2738 dbSNP
rs1405824908 2745 dbSNP
rs1332435531 2748 dbSNP
rs1467573921 2753 dbSNP
rs1397657579 2758 dbSNP
rs1325449381 2760 dbSNP
rs201987311 2763 dbSNP
rs1472801696 2764 dbSNP
rs1369725481 2768 dbSNP
rs541304043 2768 dbSNP
rs199576591 2770 dbSNP
rs1351647604 2776 dbSNP
rs1423147427 2777 dbSNP
rs1238754098 2791 dbSNP
rs970369928 2792 dbSNP
rs1456323986 2797 dbSNP
rs1256334314 2798 dbSNP
rs1195451219 2799 dbSNP
rs981419376 2801 dbSNP
rs1357096700 2803 dbSNP
rs77417541 2804 dbSNP
rs1242765007 2812 dbSNP
rs533116747 2816 dbSNP
rs1382655422 2823 dbSNP
rs1310703525 2825 dbSNP
rs8773 2826 dbSNP
rs1375151385 2843 dbSNP
rs1330220037 2844 dbSNP
rs1405615981 2845 dbSNP
rs1392490843 2846 dbSNP
rs887998419 2850 dbSNP
rs988663784 2851 dbSNP
rs200056866 2866 dbSNP
rs150672706 2890 dbSNP
rs1039173929 2895 dbSNP
rs900667343 2897 dbSNP
rs1180450887 2899 dbSNP
rs1437521907 2900 dbSNP
rs1237379478 2907 dbSNP
rs997581617 2910 dbSNP
rs201710784 2916 dbSNP
rs199868385 2919 dbSNP
rs932984572 2921 dbSNP
rs201205439 2922 dbSNP
rs1358834153 2923 dbSNP
rs202207011 2925 dbSNP
rs200425328 2928 dbSNP
rs1242987260 2945 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084041. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep1 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuuaggguaggggucCUUGGGg 5'
                         |||||| 
Target 5' gcaggagaaucgcuuGAACCCa 3'
11 - 32
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084041
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep1
Location of target site ENST00000375754.4 | 3UTR | GGAGGCUGAGGCAGGAGAAUCGCUUGAACCCAGGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE15076 Monocyte-derived dendritic cells 0.836 2.5e-3 0.867 1.2e-3 9 Click to see details
GSE38226 Liver fibrosis 0.489 1.2e-2 0.644 8.1e-4 21 Click to see details
GSE28544 Breast cancer 0.432 1.8e-2 0.443 1.5e-2 24 Click to see details
GSE19783 ER+ ER+ breast cancer -0.447 2.4e-2 -0.481 1.6e-2 20 Click to see details
GSE28260 Renal cortex and medulla 0.465 5.5e-2 0.676 5.6e-3 13 Click to see details
GSE26953 Aortic valvular endothelial cells -0.266 1.0e-1 -0.135 2.6e-1 24 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.241 1.2e-1 -0.038 4.3e-1 25 Click to see details
GSE42095 Differentiated embryonic stem cells -0.192 1.9e-1 -0.138 2.7e-1 23 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.162 2.5e-1 -0.353 6.3e-2 20 Click to see details
GSE19350 CNS germ cell tumors -0.176 2.9e-1 0.005 4.9e-1 12 Click to see details
GSE19783 ER- ER- breast cancer -0.05 3.3e-1 -0.037 3.7e-1 79 Click to see details
GSE21032 Prostate cancer -0.033 3.8e-1 -0.034 3.8e-1 83 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.059 3.9e-1 0.082 3.5e-1 25 Click to see details
GSE32688 Pancreatic cancer -0.027 4.4e-1 -0.099 2.9e-1 32 Click to see details
GSE17498 Multiple myeloma -0.019 4.5e-1 0.037 4.1e-1 40 Click to see details
GSE19536 Breast cancer -0.004 4.8e-1 -0.055 2.9e-1 100 Click to see details
GSE21687 Ependynoma primary tumors 0 5.0e-1 0.013 4.6e-1 64 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC 0.474 0 0.380 0.01 40 Click to see details
PRAD 0.541 0.01 0.205 0.2 19 Click to see details
KICH -0.491 0.01 -0.436 0.03 20 Click to see details
PCPG 0.996 0.03 1.000 0.5 3 Click to see details
CESC 0.993 0.04 1.000 0.5 3 Click to see details
ESCA 0.546 0.04 0.591 0.03 11 Click to see details
LUSC -0.248 0.07 -0.120 0.24 38 Click to see details
STAD 0.279 0.08 0.282 0.07 28 Click to see details
PAAD -0.733 0.13 -1.000 0.5 4 Click to see details
BRCA 0.114 0.16 0.034 0.38 78 Click to see details
LIHC 0.156 0.17 0.206 0.11 38 Click to see details
UCEC -0.212 0.19 -0.037 0.44 19 Click to see details
KIRC -0.055 0.34 -0.104 0.21 62 Click to see details
COAD 0.137 0.37 0.286 0.25 8 Click to see details
LUAD -0.09 0.41 -0.283 0.23 9 Click to see details
KIRP 0.038 0.42 -0.017 0.46 32 Click to see details
CHOL -0.085 0.42 0.095 0.41 8 Click to see details
BLCA 0.038 0.44 0.076 0.39 16 Click to see details
THCA -0.008 0.48 -0.061 0.32 59 Click to see details
THCA -0.008 0.48 -0.061 0.32 59 Click to see details
THCA -0.008 0.48 -0.061 0.32 59 Click to see details
131 hsa-miR-23a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT038958 ATF1 activating transcription factor 1 1 1
MIRT057661 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT395438 NFKBID NFKB inhibitor delta 2 2
MIRT463884 WNT7B Wnt family member 7B 2 4
MIRT475804 HDGF heparin binding growth factor 2 2
MIRT478528 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT479278 CHD4 chromodomain helicase DNA binding protein 4 2 6
MIRT492564 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT500353 ZNF385A zinc finger protein 385A 2 2
MIRT509788 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511566 HIST3H2BB histone cluster 3 H2B family member b 2 4
MIRT525450 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539558 CNKSR3 CNKSR family member 3 2 4
MIRT540034 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540225 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540242 RGS17 regulator of G protein signaling 17 2 2
MIRT540871 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT559065 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT560685 HIST1H1T histone cluster 1 H1 family member t 2 2
MIRT565593 SLC35G1 solute carrier family 35 member G1 2 2
MIRT565642 SKI SKI proto-oncogene 2 2
MIRT576747 Tmem127 transmembrane protein 127 2 2
MIRT607712 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT615682 NAV2 neuron navigator 2 2 2
MIRT617337 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617378 FAM227A family with sequence similarity 227 member A 2 2
MIRT620855 SERPING1 serpin family G member 1 2 2
MIRT625112 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625124 NUP93 nucleoporin 93 2 2
MIRT625898 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626016 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626481 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT626573 MED7 mediator complex subunit 7 2 2
MIRT626814 PRR11 proline rich 11 2 2
MIRT628136 HM13 histocompatibility minor 13 2 2
MIRT630771 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT633133 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT636950 APTX aprataxin 2 2
MIRT637802 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT638622 GSR glutathione-disulfide reductase 2 4
MIRT642196 SMAGP small cell adhesion glycoprotein 2 2
MIRT645121 HES2 hes family bHLH transcription factor 2 2 2
MIRT645344 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT646564 ALDH5A1 aldehyde dehydrogenase 5 family member A1 2 2
MIRT649243 TRIM65 tripartite motif containing 65 2 2
MIRT651810 USP49 ubiquitin specific peptidase 49 2 2
MIRT652137 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652668 TIMELESS timeless circadian clock 2 2
MIRT655894 NEK9 NIMA related kinase 9 2 2
MIRT656564 LYRM7 LYR motif containing 7 2 2
MIRT657194 IKZF3 IKAROS family zinc finger 3 2 2
MIRT657907 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT660207 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660619 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT660826 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT660986 ABHD2 abhydrolase domain containing 2 2 2
MIRT662232 PGBD4 piggyBac transposable element derived 4 2 2
MIRT663691 ZNF347 zinc finger protein 347 2 2
MIRT665577 TUBD1 tubulin delta 1 2 2
MIRT666149 SP2 Sp2 transcription factor 2 2
MIRT666310 SLC22A3 solute carrier family 22 member 3 2 2
MIRT666457 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT667716 KIAA1468 KIAA1468 2 2
MIRT668329 FKBP5 FK506 binding protein 5 2 2
MIRT668370 FBXO47 F-box protein 47 2 2
MIRT669304 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669538 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT671681 ADK adenosine kinase 2 2
MIRT672177 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT673604 HPSE heparanase 2 2
MIRT673749 ZNF333 zinc finger protein 333 2 2
MIRT674807 FAM229B family with sequence similarity 229 member B 2 2
MIRT675286 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675391 SVOP SV2 related protein 2 2
MIRT675788 MED28 mediator complex subunit 28 2 2
MIRT676151 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676499 GJD3 gap junction protein delta 3 2 2
MIRT676621 CSNK1E casein kinase 1 epsilon 2 2
MIRT676644 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676711 METTL14 methyltransferase like 14 2 2
MIRT676809 SHROOM4 shroom family member 4 2 2
MIRT677036 FOXO3 forkhead box O3 2 2
MIRT677062 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT677086 SMIM15 small integral membrane protein 15 2 2
MIRT677193 MURC caveolae associated protein 4 2 2
MIRT677273 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677345 POC1A POC1 centriolar protein A 2 2
MIRT677504 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677526 OCIAD2 OCIA domain containing 2 2 2
MIRT677661 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT677727 SSR1 signal sequence receptor subunit 1 2 2
MIRT677803 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT678144 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678376 VTA1 vesicle trafficking 1 2 2
MIRT678708 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT678868 FAM118A family with sequence similarity 118 member A 2 2
MIRT679039 LACTB lactamase beta 2 2
MIRT679081 PURB purine rich element binding protein B 2 2
MIRT679137 SYK spleen associated tyrosine kinase 2 2
MIRT679299 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679741 CABP4 calcium binding protein 4 2 2
MIRT679946 AS3MT arsenite methyltransferase 2 2
MIRT679976 E2F2 E2F transcription factor 2 2 2
MIRT683628 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT683901 PSMB9 proteasome subunit beta 9 2 2
MIRT684172 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684231 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT685403 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686253 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT687513 NCKAP1 NCK associated protein 1 2 2
MIRT688243 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688315 FAM151B family with sequence similarity 151 member B 2 2
MIRT688733 CNDP1 carnosine dipeptidase 1 2 2
MIRT689031 ANGPTL3 angiopoietin like 3 2 2
MIRT698207 TMEM248 transmembrane protein 248 2 2
MIRT699859 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT709954 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT711541 MSH3 mutS homolog 3 2 2
MIRT712077 WDR37 WD repeat domain 37 2 2
MIRT715312 POLR2E RNA polymerase II subunit E 2 2
MIRT715725 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT715748 HSD11B1L hydroxysteroid 11-beta dehydrogenase 1 like 2 2
MIRT717604 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717875 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT718042 NIPAL2 NIPA like domain containing 2 2 2
MIRT718829 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT724037 CAMK2N2 calcium/calmodulin dependent protein kinase II inhibitor 2 2 2
MIRT733305 TNF tumor necrosis factor 1 0
MIRT734941 HSPA1B heat shock protein family A (Hsp70) member 1B 3 0
MIRT737343 IGF2 insulin like growth factor 2 3 0
MIRT737546 PTEN phosphatase and tensin homolog 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-23a 1'-Acetoxychavicol acetate (ACA) NULL 119104 Microarray HN4 cell line 24317043 2014 down-regulated
miR-23a 5-Fluorouracil approved 3385 Quantitative real-time PCR colon cancer cells 17702597 2007 up-regulated
miR-23a Curcumin NULL 969516 Microarray BxPC-3 human pancreatic carcinoma cell line 18347134 2008 up-regulated
miR-23a Enoxacin approved 3229 Quantitative real-time PCR HEK293 cells 18641635 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR glandular epithelial cells 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR glandular epithelial cells 19088369 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Microarray MCF-7 breast cancer cells 19528081 2009 up-regulated
miR-23a Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 down-regulated
miR-23a Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-23a Bio-Oss NULL NULL Microarray osteoblast-like cell line (MG63) 20224834 2010 up-regulated
miR-23a Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-23a 5-Fluorouracil approved 3385 Microarray MCF-7 breast cancer cells 21506117 2011 up-regulated
miR-23a Trastuzumab approved NULL Microarray BT474 cells 22384020 2012 up-regulated
miR-23a Trastuzumab approved NULL Microarray SKBR3 cells. 22384020 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Quantitative real-time PCR thymus 23024791 2012 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse liver 19270793 2009 up-regulated
miR-23a Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 up-regualted
miR-23a Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 down-regulated
miR-23a Comfrey NULL 6440495 Microarray rat liver 21370286 2011 up-regulated
miR-23a Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-23a Ethanol NULL 702 Quantitative real-time PCR zebrafish embryos 22298809 2012 down-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a Morphine approved 5288826 Microarray human monocyte-derived macrophages (h-mdms) infection with HIV-1 20564181 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive Low Breast Cancer cell line (MDA-MB-231)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (BGC823)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC-7901)
hsa-mir-23a Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-mir-23a Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-23a Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (OE19)
hsa-mir-23a Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-23a Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (SGC-7901)
hsa-miR-23a-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Palbociclib 5330286 NSC758247 approved resistant High Breast Cancer cell line (T47D)
hsa-miR-23a-5p Arsenic trioxide 261004 NSC759274 approved sensitive Low Acute Myeloid Leukemia cell line (U937, Kasumi-1, THP-1, Jurkat E6.1, SUP B15)
hsa-miR-23a-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-23a-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (total RNA)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-23a-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-23a-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-23a-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-23a-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-23a-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-23a-5p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (MDA-231)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-23a-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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