pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol LIN9   
Synonyms BARA, BARPsv, Lin-9, TGS, TGS1, TGS2
Description lin-9 DREAM MuvB core complex component
Transcript NM_173083   
Expression
Putative miRNA Targets on LIN9
3'UTR of LIN9
(miRNA target sites are highlighted)
>LIN9|NM_173083|3'UTR
   1 GTAAAGATTTCATTATTCCAACTGCACGGGACATTGTTTTTGAGAAGTTCTTTTCCTTTATATAGGCTTCCAACACCAAA
  81 TAACCTAACTGCTGGAAAACAAGGGAAATTTAAATCTCCAAATAAGGCATTTTAATAGACTGTACTGCTTCTTAAACCAG
 161 CATTGCTGACCAGCATTATATTTATTTTTCTTTTATTATTCAGATGCAGTAGCATTGCTTATGTTACATATGTTTATATT
 241 CACAAATATTTTTAAACTGAAATATCTGAACATAATATAATTTCGTGGAAGAATACATTGACCATTTTTTTTAATGTGCA
 321 TGAATTCACCGCAACACATGCAGACAACTGCTGCAATGGAGAGTATGAAGAAACCTGGTCTTTTTATTCATGTCGGTGGC
 401 AGTGTGGAAATTCCATCCAGAAAATTACAACTCCACTTGATTTAGTTGATCACCATCTCAGTCTTCAAAAGATAACATCA
 481 TGAGGTGTGGGAAGTCCTAGTTTTAAGGAAACCACTGAAATATAGATGGGAAATGTGGACTTTACAAGTATATGTTATAT
 561 ATACTTGCAATGTGACATGGTTCTGTAGATCATTTTATAATAATAAATATTTTAATTTATCATAACATATAAAAGAAACC
 641 TTTGTTGTTTGTTGAAAGAAAATGAAGGAACAGGGGGAAAAAAGGTGCAAAATGCTAAATTTCTAAAAATGGATTTGGCA
 721 TGTCTTCCCATCAGTTCAGGTCAAAAGTGCATTGTTGTGAGATTTATTAAAAAAAAAATGATAACACACTATTTTCATAT
 801 TTTTTTGTTTATTTGCACAACTTTTAAACCAGATTACTGGTTAAAATCCAACAGTACACAATTTATAAAGTAAAAAGATT
 881 TTATAAGGAAAACAAATATAATAACCAGTGCTGTGAAATGCAGAAGAAAGGCTTGTTTTGGTTGTTTTTCTTTTTTAGGA
 961 AAACGCTGCCTAAAATGTTAATCTTGTAAAAAGTATGTATTTGGAATTTTCTTCGTTTTAATAGAATATTATAAACTCAA
1041 AATATAAATTTTTTTCAAATTTGGAGTTTAAGATATAGCTGTAGAGGTGGTTTTAATTCCTTTAGATGTCTCATAAAATG
1121 AGACTTTTTATATGTTAATGTATAATAAAACTGAAACAAGATTATTTTCCATTTGAAATTTTTGTATAGTTTAAAAAGGC
1201 TTCCGTATTCTTTGTTGGTATTGTGCCACTGCAGAACTTTAGTGCAGAGTTTATATTTAGCTAAACTGTTATGTTAATTA
1281 AGAAATGCATAAATCTTCTATTCTTAATATTTGTAATTCTAAATAAATTGATCTATGAAAATTATTATTTTC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucgGUCGGUUGAGUGUCACGUCu 5'
             |||  ||||: :||||||| 
Target 5' ctgCAG--AACTT-TAGTGCAGa 3'
1229 - 1248 159.00 -17.80
2
miRNA  3' ucGGUC-GGUUGAG-UGUCACGUcu 5'
            :||| :||: || | ||||||  
Target 5' caTCAGTTCAGGTCAAAAGTGCAtt 3'
729 - 753 141.00 -16.60
3
miRNA  3' ucGGU-CGGUUGAGUGUCACGUCu 5'
            :|| |:|:: | :|||||::| 
Target 5' atTCATGTCGG-TGGCAGTGTGGa 3'
386 - 408 124.00 -16.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN24293407 6 COSMIC
COSN30484452 11 COSMIC
COSN31582678 23 COSMIC
COSN30753292 27 COSMIC
COSN30523781 28 COSMIC
COSN30114585 50 COSMIC
COSN30489483 55 COSMIC
COSN31495857 70 COSMIC
COSN30469845 84 COSMIC
COSN31597669 100 COSMIC
COSN28646771 162 COSMIC
COSN31581315 193 COSMIC
COSN1434157 214 COSMIC
COSN1434156 228 COSMIC
COSN31483950 364 COSMIC
COSN23337504 536 COSMIC
COSN31588255 565 COSMIC
COSN31527637 635 COSMIC
COSN31517420 658 COSMIC
COSN20096068 672 COSMIC
COSN26218994 766 COSMIC
COSN28925882 768 COSMIC
COSN27461154 769 COSMIC
COSN31597335 769 COSMIC
COSN31595836 799 COSMIC
COSN31547946 877 COSMIC
COSN1434154 965 COSMIC
COSN15317798 975 COSMIC
COSN31566775 1014 COSMIC
COSN28763700 1036 COSMIC
COSN31515586 1056 COSMIC
COSN31608396 1210 COSMIC
COSN30543419 1226 COSMIC
COSN31521810 1233 COSMIC
COSN31522754 1256 COSMIC
COSN31567976 1325 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1159548122 1 dbSNP
rs368923092 10 dbSNP
rs1426763703 11 dbSNP
rs1313442929 20 dbSNP
rs1483630346 21 dbSNP
rs748171770 24 dbSNP
rs774285887 27 dbSNP
rs761639547 28 dbSNP
rs1339744498 32 dbSNP
rs370677165 34 dbSNP
rs1318473612 40 dbSNP
rs749383150 41 dbSNP
rs1275487392 44 dbSNP
rs1268584565 46 dbSNP
rs376836901 47 dbSNP
rs746198380 50 dbSNP
rs1258882205 63 dbSNP
rs1037491771 65 dbSNP
rs141392755 66 dbSNP
rs1191682131 67 dbSNP
rs1262572375 70 dbSNP
rs1475830782 71 dbSNP
rs1296126051 77 dbSNP
rs907949630 81 dbSNP
rs557012631 83 dbSNP
rs933292097 85 dbSNP
rs547860263 101 dbSNP
rs951087088 119 dbSNP
rs923298697 127 dbSNP
rs369824298 135 dbSNP
rs778797704 142 dbSNP
rs754945670 144 dbSNP
rs1174162787 148 dbSNP
rs61836886 162 dbSNP
rs1397590354 169 dbSNP
rs1296972492 170 dbSNP
rs780823326 180 dbSNP
rs779563316 184 dbSNP
rs1387153668 204 dbSNP
rs990299060 206 dbSNP
rs1165639130 213 dbSNP
rs956221147 217 dbSNP
rs1023589572 221 dbSNP
rs1012081742 222 dbSNP
rs1281657032 224 dbSNP
rs1350599176 232 dbSNP
rs1418686816 240 dbSNP
rs1215102981 243 dbSNP
rs568628182 253 dbSNP
rs999293914 265 dbSNP
rs1195557938 267 dbSNP
rs1481458056 271 dbSNP
rs1477567484 272 dbSNP
rs906154498 278 dbSNP
rs999628781 281 dbSNP
rs1417726067 282 dbSNP
rs879633602 285 dbSNP
rs1221647577 290 dbSNP
rs1012361789 297 dbSNP
rs1022277334 300 dbSNP
rs1321157251 305 dbSNP
rs1010891706 313 dbSNP
rs1330215314 313 dbSNP
rs1491298202 314 dbSNP
rs1293294117 315 dbSNP
rs900755819 327 dbSNP
rs1039300233 330 dbSNP
rs1279530187 331 dbSNP
rs375092906 331 dbSNP
rs532884055 334 dbSNP
rs1315836343 337 dbSNP
rs1287988085 338 dbSNP
rs941857491 339 dbSNP
rs1468154991 353 dbSNP
rs1214573311 355 dbSNP
rs535307126 356 dbSNP
rs886289946 357 dbSNP
rs1047762384 370 dbSNP
rs1177905734 378 dbSNP
rs933426834 380 dbSNP
rs929761749 383 dbSNP
rs1389405115 392 dbSNP
rs1327536491 394 dbSNP
rs190646593 395 dbSNP
rs750023999 396 dbSNP
rs941042691 400 dbSNP
rs1302991340 404 dbSNP
rs1282446912 415 dbSNP
rs552940220 418 dbSNP
rs990743868 430 dbSNP
rs1294658329 431 dbSNP
rs1456264574 444 dbSNP
rs960794055 448 dbSNP
rs1250973000 451 dbSNP
rs767140495 455 dbSNP
rs1343519993 458 dbSNP
rs1161469721 462 dbSNP
rs1473078648 466 dbSNP
rs1034877690 467 dbSNP
rs1412419836 470 dbSNP
rs1416471682 470 dbSNP
rs1198483876 490 dbSNP
rs1475271245 493 dbSNP
rs530912251 494 dbSNP
rs914814323 496 dbSNP
rs1421100283 511 dbSNP
rs1206800514 513 dbSNP
rs990413574 521 dbSNP
rs978352221 523 dbSNP
rs1269316727 526 dbSNP
rs956168956 548 dbSNP
rs966807104 574 dbSNP
rs1022836309 578 dbSNP
rs758820800 585 dbSNP
rs1295342821 587 dbSNP
rs1010860579 588 dbSNP
rs1485222048 592 dbSNP
rs924777600 597 dbSNP
rs978211625 598 dbSNP
rs1258508662 607 dbSNP
rs900513403 610 dbSNP
rs1341247272 615 dbSNP
rs1198627741 629 dbSNP
rs111497688 630 dbSNP
rs1485706265 638 dbSNP
rs1189530916 640 dbSNP
rs563580232 643 dbSNP
rs1283011571 647 dbSNP
rs1427495929 650 dbSNP
rs1222018743 651 dbSNP
rs1017780931 655 dbSNP
rs1302512345 664 dbSNP
rs548655732 666 dbSNP
rs1009119249 667 dbSNP
rs890597915 668 dbSNP
rs1463890706 671 dbSNP
rs763711559 672 dbSNP
rs1047873711 673 dbSNP
rs139586416 674 dbSNP
rs1457945966 675 dbSNP
rs528397149 684 dbSNP
rs896898693 698 dbSNP
rs1174575892 703 dbSNP
rs1038125926 711 dbSNP
rs940969311 719 dbSNP
rs1025185277 728 dbSNP
rs1011899550 730 dbSNP
rs1379160706 738 dbSNP
rs1230869162 740 dbSNP
rs990711415 752 dbSNP
rs1348420071 757 dbSNP
rs1212953893 758 dbSNP
rs1283205573 763 dbSNP
rs959329472 764 dbSNP
rs1485279638 769 dbSNP
rs187348202 769 dbSNP
rs927900178 779 dbSNP
rs966985888 779 dbSNP
rs977945541 779 dbSNP
rs1176111647 780 dbSNP
rs1394865859 780 dbSNP
rs1343477318 781 dbSNP
rs1022297976 783 dbSNP
rs1289652002 787 dbSNP
rs1385316450 787 dbSNP
rs989533953 788 dbSNP
rs774510054 790 dbSNP
rs184060115 792 dbSNP
rs540061660 797 dbSNP
rs558862506 800 dbSNP
rs1215963631 803 dbSNP
rs112592704 807 dbSNP
rs1262065339 807 dbSNP
rs1009338840 810 dbSNP
rs954975224 811 dbSNP
rs1347492344 815 dbSNP
rs1047545098 816 dbSNP
rs753163467 829 dbSNP
rs1257022055 851 dbSNP
rs1227323420 869 dbSNP
rs1196026434 871 dbSNP
rs1325249909 877 dbSNP
rs1406496252 877 dbSNP
rs901907947 878 dbSNP
rs1159837208 883 dbSNP
rs1365620190 897 dbSNP
rs1297772784 899 dbSNP
rs1460029297 904 dbSNP
rs1435842399 906 dbSNP
rs1382143821 910 dbSNP
rs1334888577 913 dbSNP
rs572733775 929 dbSNP
rs771133881 931 dbSNP
rs1308454543 935 dbSNP
rs1319434998 941 dbSNP
rs1232267696 943 dbSNP
rs914595230 945 dbSNP
rs1469178035 946 dbSNP
rs371809322 947 dbSNP
rs2377028 965 dbSNP
rs1178307623 981 dbSNP
rs775312523 998 dbSNP
rs1474292053 1000 dbSNP
rs1164455474 1003 dbSNP
rs570181515 1010 dbSNP
rs545823065 1014 dbSNP
rs924892253 1015 dbSNP
rs866435270 1018 dbSNP
rs556991832 1019 dbSNP
rs2377029 1036 dbSNP
rs568007791 1038 dbSNP
rs1391917510 1046 dbSNP
rs1181363128 1048 dbSNP
rs1443842371 1056 dbSNP
rs1336410545 1062 dbSNP
rs148302888 1066 dbSNP
rs563355017 1073 dbSNP
rs143275101 1081 dbSNP
rs1005874394 1083 dbSNP
rs1307318345 1092 dbSNP
rs950632849 1113 dbSNP
rs1277320772 1123 dbSNP
rs1484726681 1125 dbSNP
rs1187402418 1130 dbSNP
rs1229794460 1130 dbSNP
rs1042700087 1151 dbSNP
rs1358816419 1160 dbSNP
rs1476279590 1160 dbSNP
rs553569352 1168 dbSNP
rs1185028798 1170 dbSNP
rs1418487411 1186 dbSNP
rs945195566 1189 dbSNP
rs1172428935 1198 dbSNP
rs1248422364 1199 dbSNP
rs1373629818 1203 dbSNP
rs1341342423 1205 dbSNP
rs915091385 1210 dbSNP
rs1356839931 1215 dbSNP
rs1428170707 1236 dbSNP
rs1269273144 1237 dbSNP
rs1482397477 1240 dbSNP
rs1328476483 1241 dbSNP
rs1026211093 1242 dbSNP
rs997345603 1252 dbSNP
rs1346263596 1266 dbSNP
rs149174065 1267 dbSNP
rs1039094287 1271 dbSNP
rs910666506 1272 dbSNP
rs770452890 1276 dbSNP
rs893109495 1277 dbSNP
rs1054453235 1282 dbSNP
rs1430400423 1292 dbSNP
rs934689136 1299 dbSNP
rs1026530491 1300 dbSNP
rs767156257 1306 dbSNP
rs1161182808 1317 dbSNP
rs1473557077 1320 dbSNP
rs751988076 1327 dbSNP
rs1376711600 1329 dbSNP
rs1317183378 1330 dbSNP
rs1368643734 1330 dbSNP
rs1180664938 1335 dbSNP
rs1345492826 1337 dbSNP
rs1436367381 1340 dbSNP
rs1432469342 1347 dbSNP
rs1254502796 1350 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084041. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep1 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|: |||:  :: ||||||| 
Target 5' uaUCGCCCAGGCUGGAGUGCAGu 3'
1 - 23
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084041
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep1
Location of target site ENST00000260129.5 | 3UTR | UAUCGCCCAGGCUGGAGUGCAGUGGCGCGAUCUCGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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