pre-miRNA Information
pre-miRNA hsa-mir-4763   
Genomic Coordinates chr22: 46113566 - 46113657
Description Homo sapiens miR-4763 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4763-5p
Sequence 19| CGCCUGCCCAGCCCUCCUGCU |39
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs374776264 1 dbSNP
rs1174502793 2 dbSNP
rs966122637 3 dbSNP
rs891363409 6 dbSNP
rs1303008773 8 dbSNP
rs1446379219 11 dbSNP
rs1410535134 13 dbSNP
rs1424733379 14 dbSNP
rs1372551711 16 dbSNP
rs756995936 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RRP36   
Synonyms C6orf153, dJ20C7.4
Description ribosomal RNA processing 36
Transcript NM_033112   
Expression
Putative miRNA Targets on RRP36
3'UTR of RRP36
(miRNA target sites are highlighted)
>RRP36|NM_033112|3'UTR
   1 TAAGGAACTATCCTCTGCTCTGCCACTGCCCCAGGGAGACATGGATCTGTGAGGACAGATTTGGCCACGGCTGGTTTCCG
  81 TTCAAGGGCAAGGATCACAGCTGCCCTTGAATCTCATTGCCTCAGAGAAGACTAGAGGGCTCTTGGACTATCCCTAGGGC
 161 TACACAAGAATAGTTCAGCCTTCTGCCATGCCACACAGCCTCAGCTTGAATCTGGTTCATTGCGTCCTCGTGTTCTTCTC
 241 TCATCCTTGCCTTAAACCAGGGATTCTGATACCGAAGAAGAGGGGCCAATGAAAACCATGGAGTCTGTTCGTGACTCCCA
 321 GGGCTGGGACATTATGTAGGAGCCACTTCATAAACATTCTCTTTACTCATCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucguccuCCCGACCCGUCCGc 5'
                 || |  ||| ||: 
Target 5' cagatttGGCCACGGCTGGTt 3'
56 - 76 98.00 -10.50
2
miRNA  3' ucguccucccGACCCGUCCgc 5'
                    | |||| ||  
Target 5' tcgtgactccCAGGGCTGGga 3'
309 - 329 95.00 -18.04
3
miRNA  3' ucguccucccgacccGUCCgc 5'
                         ||||  
Target 5' gctctgccactgcccCAGGga 3'
17 - 37 80.00 -8.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30146005 21 COSMIC
COSN30167295 45 COSMIC
COSN30167292 52 COSMIC
COSN8892484 52 COSMIC
COSN31554264 72 COSMIC
COSN30180009 116 COSMIC
COSN7883409 124 COSMIC
COSN1333306 138 COSMIC
COSN9783646 215 COSMIC
COSN31597939 306 COSMIC
COSN21118710 308 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs549735297 4 dbSNP
rs1470788479 5 dbSNP
rs1156464765 9 dbSNP
rs770402396 13 dbSNP
rs776244826 20 dbSNP
rs1435571231 21 dbSNP
rs763364038 24 dbSNP
rs1444471469 25 dbSNP
rs960688191 26 dbSNP
rs1329286685 31 dbSNP
rs1435657727 32 dbSNP
rs990858416 37 dbSNP
rs769262107 41 dbSNP
rs774519663 42 dbSNP
rs762300885 46 dbSNP
rs1219150765 47 dbSNP
rs1266498722 50 dbSNP
rs200598911 52 dbSNP
rs960718932 62 dbSNP
rs1466357923 68 dbSNP
rs916822556 69 dbSNP
rs952412804 70 dbSNP
rs1483456599 72 dbSNP
rs1198905126 75 dbSNP
rs1427471606 80 dbSNP
rs746012779 81 dbSNP
rs908039200 84 dbSNP
rs11539710 86 dbSNP
rs939754513 87 dbSNP
rs769986587 105 dbSNP
rs563158533 107 dbSNP
rs1036735356 112 dbSNP
rs985150581 123 dbSNP
rs1458694520 125 dbSNP
rs909125462 137 dbSNP
rs943233576 140 dbSNP
rs775423514 151 dbSNP
rs1322177720 152 dbSNP
rs761845940 155 dbSNP
rs922396230 157 dbSNP
rs748949522 167 dbSNP
rs538083015 171 dbSNP
rs974529045 177 dbSNP
rs1371801413 180 dbSNP
rs1375998240 185 dbSNP
rs1309848669 189 dbSNP
rs531969033 205 dbSNP
rs551974650 213 dbSNP
rs1447674818 219 dbSNP
rs921363526 221 dbSNP
rs1292069772 224 dbSNP
rs934037859 225 dbSNP
rs933642164 230 dbSNP
rs772025291 231 dbSNP
rs778570621 233 dbSNP
rs1420418836 235 dbSNP
rs1264653509 239 dbSNP
rs945396130 243 dbSNP
rs186362573 252 dbSNP
rs534257314 253 dbSNP
rs1214129341 255 dbSNP
rs946641583 258 dbSNP
rs34086946 260 dbSNP
rs1002399296 268 dbSNP
rs1242219508 269 dbSNP
rs1033825510 274 dbSNP
rs1339215511 282 dbSNP
rs41274910 290 dbSNP
rs1275739161 292 dbSNP
rs547572768 300 dbSNP
rs902351896 306 dbSNP
rs567692482 307 dbSNP
rs1360279765 308 dbSNP
rs1035099991 311 dbSNP
rs536237679 312 dbSNP
rs1375444186 318 dbSNP
rs1266984340 319 dbSNP
rs1433443452 323 dbSNP
rs1270656973 334 dbSNP
rs896594834 336 dbSNP
rs556068488 340 dbSNP
rs1487876850 341 dbSNP
rs1286381591 356 dbSNP
rs571710655 360 dbSNP
rs1206834121 368 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084041. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep1 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucGUCCUCCCGACCCGUCCGc 5'
            ::||||| |  ||||||| 
Target 5' uuUGGGAGGCCGAGGCAGGCg 3'
5 - 25
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084041
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep1
Location of target site ENST00000244496.5 | 3UTR | CCACUUUGGGAGGCCGAGGCAGGCGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
69 hsa-miR-4763-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT116035 DEPDC1 DEP domain containing 1 2 2
MIRT347197 SIN3B SIN3 transcription regulator family member B 2 2
MIRT443248 C9orf170 chromosome 9 open reading frame 170 2 2
MIRT475164 IP6K1 inositol hexakisphosphate kinase 1 2 2
MIRT495486 VTI1B vesicle transport through interaction with t-SNAREs 1B 2 2
MIRT496755 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT496863 C21orf2 chromosome 21 open reading frame 2 2 2
MIRT499264 NBPF11 NBPF member 11 2 2
MIRT499517 MAFK MAF bZIP transcription factor K 2 2
MIRT512952 MKI67 marker of proliferation Ki-67 2 2
MIRT514656 NUP93 nucleoporin 93 2 2
MIRT517986 SLC16A13 solute carrier family 16 member 13 2 2
MIRT522816 KLHL9 kelch like family member 9 2 4
MIRT525495 CD63 CD63 molecule 2 2
MIRT528111 FOXH1 forkhead box H1 2 2
MIRT531683 MYO3A myosin IIIA 2 2
MIRT534806 RAB37 RAB37, member RAS oncogene family 2 2
MIRT573041 SHMT1 serine hydroxymethyltransferase 1 2 2
MIRT576720 Wars tryptophanyl-tRNA synthetase 2 2
MIRT609727 MLXIPL MLX interacting protein like 2 2
MIRT610843 FAM180B family with sequence similarity 180 member B 2 4
MIRT614735 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT616981 EPOR erythropoietin receptor 2 2
MIRT617265 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT619405 INTS7 integrator complex subunit 7 2 2
MIRT621832 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT621893 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT630263 SMIM14 small integral membrane protein 14 2 2
MIRT634879 SENP8 SUMO/sentrin peptidase family member, NEDD8 specific 2 2
MIRT636863 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT637653 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT637699 ZNF439 zinc finger protein 439 2 2
MIRT637759 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT638193 TAOK1 TAO kinase 1 2 2
MIRT638996 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT642221 RABAC1 Rab acceptor 1 2 2
MIRT643327 ATCAY ATCAY, caytaxin 2 4
MIRT643419 ERVMER34-1 endogenous retrovirus group MER34 member 1, envelope 2 2
MIRT644499 RNF14 ring finger protein 14 2 2
MIRT644603 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT644795 C21orf59 chromosome 21 open reading frame 59 2 2
MIRT648732 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT653856 SHE Src homology 2 domain containing E 2 2
MIRT654129 RPL14 ribosomal protein L14 2 4
MIRT658876 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT671624 C20orf144 chromosome 20 open reading frame 144 2 4
MIRT677367 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT677579 TRIM65 tripartite motif containing 65 2 2
MIRT678220 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT679613 RRP36 ribosomal RNA processing 36 2 2
MIRT686081 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT691817 ICA1L islet cell autoantigen 1 like 2 2
MIRT693869 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT694544 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694926 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT697758 USP37 ubiquitin specific peptidase 37 2 2
MIRT697891 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT701569 MYPN myopalladin 2 2
MIRT703081 GPRIN3 GPRIN family member 3 2 2
MIRT708104 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT708320 NT5C 5', 3'-nucleotidase, cytosolic 2 2
MIRT709878 TRAF1 TNF receptor associated factor 1 2 2
MIRT713545 GJB1 gap junction protein beta 1 2 2
MIRT716275 NUP85 nucleoporin 85 2 2
MIRT716621 CRCP CGRP receptor component 2 2
MIRT717987 C9orf171 cilia and flagella associated protein 77 2 2
MIRT718438 RAB11B RAB11B, member RAS oncogene family 2 2
MIRT722544 AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 2 2
MIRT724013 F2RL1 F2R like trypsin receptor 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4763 Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-mir-4763 Doxorubicin 31703 NSC123127 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-mir-4763 Fluorouracil 3385 NSC19893 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-mir-4763 Vincristine 5978 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-mir-4763 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4763 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4763-5p Anthracycline 30323 NSC82151 approved resistant High Breast Cancer tissue
hsa-miR-4763-5p Fluorouracil 3385 NSC19893 approved resistant High Breast Cancer tissue
hsa-miR-4763-5p Cyclophosphamide 2907 NSC26271 approved resistant High Breast Cancer tissue
hsa-miR-4763-5p Methotrexate 126941 NSC740 approved resistant High Breast Cancer tissue
hsa-miR-4763-5p Taxol 36314 NSC125973 approved resistant High Breast Cancer tissue
hsa-miR-4763-5p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-4763-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4763-5p Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-4763-5p Platinum 23939 sensitive tissue (non-small cell lung cancer)
hsa-miR-4763-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4763-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4763-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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