pre-miRNA Information
pre-miRNA hsa-mir-3152   
Genomic Coordinates chr9: 18573306 - 18573379
Description Homo sapiens miR-3152 stem-loop
Comment Berezikov et al. proposed this sequence as a miRNA candidate based on the RAKE method .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3152-5p
Sequence 11| AUUGCCUCUGUUCUAACACAAG |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1019691326 2 dbSNP
rs1282676806 8 dbSNP
rs762305650 11 dbSNP
rs1364318615 12 dbSNP
rs556364307 18 dbSNP
rs1002755159 19 dbSNP
rs1238555909 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CABP4   
Synonyms CRSD, CSNB2B
Description calcium binding protein 4
Transcript NM_145200   
Expression
Putative miRNA Targets on CABP4
3'UTR of CABP4
(miRNA target sites are highlighted)
>CABP4|NM_145200|3'UTR
   1 GGCTCCAGGAGGGAATATCTGTTGCCCCTGCGGCCCCAGACACCAGCCAGACCCAGGCTGCAGGCCTCCCCCAGGAGCCT
  81 CCAGGATGGAGATGGAGACCCAGCAGCCCCCAGACTACTTCTATCCCTGAAAACACCTGGCCTCAATGTTGGCTTGTTAT
 161 GTTACCTGCCCACCCTCATCCTTACCTCCTCCTACTCAAGCTGCCTGGAGAAGACCTGCTCTCAGCTGCCCACCGTTCCT
 241 CAGTGTGAGCAAGATTTGGGTCTCTCCAGACCTCTGGGAGGTAGGGAGTTCCCTGGCACTGGCAGCATTCAGTGGGGACC
 321 CCCCAGTGGCATGATGAATGGAGAGGATGGCTGGACCCCTTCCACTACTTATGTTTATAATTTTTTTTTTTTTTAATGAA
 401 CTTGAGCCGGGTGCAGTGGCTCACACCTGTAAGCCCAGCTGTCAGGGGGCAGAAGCGGGAGGATAGCTTGAGCCCAGGAG
 481 TGCAAGACCTGCCTGGGCAATATACTGAGACCCCATTCTCCACAAAAAGGAAAAATAAAAGACAAAAAAACAAACAAAAA
 561 ACCAAAAAACCCAAGTGTAAAAAAAGTGAGCTTGAAAGAAAGAAAGGGATGGCTCCATGTATCAAAGACAAAGAAATCAA
 641 AGCTGGGGTTGTAAGAGGGAGCTGACGCTGTGGGGGTTTCAGATCTGGATGGAGGCTTGGCCGCCTGGACTCCTACAACC
 721 ATGAGTGACAGAAGAACCATATGAGTCTGGGGAGCAAGAAACAAACCCCCCGGATATATTCCAGGGTCTCCAAAGGCTAA
 801 GATATTAATCTGTCTGCACTGACCAGTCATAGAAAGTGGCAAGGATACAGATGTTCAGGGCCCAGAGTGGAAACAGCTGC
 881 CCTAAAGAGCCTGGAACTCCAGGGCCTGCCCTTCAAGCAGGCGTGTAGTCTCTCTCCAGGGTGTGAAAAACTGGAAAAAA
 961 ACCCTGCCGCTCCCAAAGGGGAACTTGTGATAAAAATTACAGATTATTGGGCTGGGAGTGGTGGCTCACGCCTGTAATCC
1041 CAGCACTTTGGGAGGCTGAGGCGGGTGAATTACCTGAGGTCAGGAGTTTGAGGCCAGCCTGACCAACATGGTGAAACCCC
1121 ATCTCTACTAAAAATACAAAAATTAACTGGGCGAGGTAGCATGCACCTGTAATCTCAGCTACTCGGAGGTTGAGGCAGGA
1201 GAATCGCTTGAGCCCGGGAGGTGGAGCTGCAGTGAGCTGAGATCACACCATTGCACCCCAGCCTGAGCAACAGATCGAGA
1281 CTCCGTCTCAAAAACAAAACAAAAAAACCATACTGATTATAAAAGTAAAGAAACCACCATGAAGGAGACGAGACAGAGAC
1361 AAAAACAAGAGGACTGGCATCTCAGTGTACATAATACAGCCGCCTAAGAGACCACAAGATACATGCAAATAAAAGACGGC
1441 TAAAAGGGGAAGAGAGATCAACATGCAGTAACAGGATAGTATGAAGAGAGAACCGGAAGATTTAAAAAGTAACCCAACAG
1521 GCCAGGCGCATGGCTCATGCCTGGAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGGTTGCTTGAGCTCAGGAATTCGA
1601 GACCAGCCTGGGCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGTGCTTGCATCTG
1681 TGGTCCCAGGTATTCTACAGGCTGAGGTGGGAGGATCACTTGAGCCCAGGAGGCAGAGGTTGCAGTGAGTCGAGATCGCA
1761 CCACTGCACTCCAGCGTGGGTAACAGAGTGAGAATCCGTCAAAAAGAAAAAAACAAACCATGGCTTCTGTTAAAAAAATA
1841 AAGTATATTTTATATATACACACACACACACACACACACACACAGCCATTGGAATGAAAAAATAATGGATAAGCTAAACA
1921 GCAGATTAAACACAATTTAAAGATTAATGAACTGGAAGCTATATCTAAGAAATCACTTATAATGTAACACTGAGAGACAA
2001 AAGGATGGAAAATATTACAGGGTAGTTAAAAGTCACTGGAAGGCTGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTT
2081 TGGGAGGCTGAGACGGGCGGGTCACAGGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCATCTCTACTA
2161 AAAATACAAAAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAAGAGAATG
2241 GCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGGCTACAGAGCGAGACTCC
2321 GTCTCGGAAAAAAAAAAAAAAAAAGGTCACTGGAAGACTGGGTGTGGTGGCTTATGCCTGTAATCCCAGCATTTTGGGAG
2401 GCTAAGGCAGGAGGATCACTTGAGGCCAGGAGTTTGAGACCAGCCTAACAGCAAGACCCTGCCTCTTAAAAAAAATAATA
2481 AAAAAATAAGCTGGGTGTAGTGGCTCATGCTTGTAGTTCCAGCTATTCAGGAGGCTGAGGTGAGAGGATCATTTGAGCCC
2561 AGGAGTTGGAGGCTGCAGTGATCGTGCCACTGCACTCCAGCCTTGGTGACAGAGCAAGAGACCCTGTCTCAAAGAAAAAG
2641 ACAGATAAGTCCTTGGGAGTCTCAGACGGAGGACATACATAGAGAATGAACAAGAAGCAATAACCAAAGAGATAATGGCT
2721 GAAAATTTTCCATAAAGACTTCCACAGACTTCAACTCCCCAGATTGAAGGAACAAACTGAAGTCAGAGTAGGGTAAATAA
2801 AAATAAATATATATCTGGATATATCCCATTGAAACCACAGAATATAAAAAGCAAATCTTATAAATAACTGGAGAGAAAAG
2881 TCAGATTCACGGTGTTCTGTCAAAGTGTTCATGTAGACTAAGGGTGGGGAAACTTTCTGTAAAGGGCTGGAGAATAATTA
2961 TTTTCAGCTTTGAGGCTTTGGTCTCTGTTGCAGCTGCTCACGCAACTCTGCTGTTGAAGTTTGTAGTGCAAAGTCAAGTC
3041 AACAAATGAGTGTGGCTATATCAGAAATTTTAATAAATAACAGTAAAACTTCATTTATTGACATGGAAATTTGAAAAAAA
3121 AAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaacacaAUC---UUGUCUCCGUUa 5'
                 |||   ::| ||||||| 
Target 5' cagctacTAGGGAGGCTGAGGCAAg 3'
2210 - 2234 147.00 -12.10
2
miRNA  3' gaaCACAAUCUUGUCUCCGUUa 5'
             ||  ||||| || ||||| 
Target 5' ccaGTCATAGAA-AGTGGCAAg 3'
823 - 843 134.00 -9.90
3
miRNA  3' gaacacAAUCUUGU-CUCCGUUa 5'
                | ||  || ||||||: 
Target 5' atcactTGAGCCCAGGAGGCAGa 3'
1715 - 1737 132.00 -12.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
305662 27 ClinVar
879587 63 ClinVar
305663 120 ClinVar
305664 121 ClinVar
305665 263 ClinVar
879938 296 ClinVar
305666 325 ClinVar
305667 381 ClinVar
879939 395 ClinVar
879940 409 ClinVar
305668 670 ClinVar
305669 682 ClinVar
305670 684 ClinVar
877142 703 ClinVar
305671 877 ClinVar
305672 964 ClinVar
305673 1041 ClinVar
877143 1064 ClinVar
305674 1118 ClinVar
877144 1159 ClinVar
878175 1191 ClinVar
305675 1224 ClinVar
305676 1286 ClinVar
305677 1292 ClinVar
305678 1391 ClinVar
878176 1393 ClinVar
878177 1403 ClinVar
878178 1414 ClinVar
305679 1436 ClinVar
879630 1511 ClinVar
305680 1528 ClinVar
879631 1637 ClinVar
879632 1663 ClinVar
305681 1698 ClinVar
879633 1759 ClinVar
305682 1807 ClinVar
305683 1828 ClinVar
305684 1851 ClinVar
305685 1851 ClinVar
305686 1854 ClinVar
305687 1856 ClinVar
305688 1856 ClinVar
305689 1856 ClinVar
305690 1858 ClinVar
305691 1858 ClinVar
305692 1858 ClinVar
305693 1858 ClinVar
305694 1858 ClinVar
305695 1858 ClinVar
305696 1858 ClinVar
305697 1858 ClinVar
305698 1860 ClinVar
305699 1860 ClinVar
879996 1874 ClinVar
305700 1878 ClinVar
305701 1934 ClinVar
305702 1940 ClinVar
879997 1958 ClinVar
879998 2001 ClinVar
879999 2005 ClinVar
877199 2062 ClinVar
305703 2066 ClinVar
305704 2090 ClinVar
305705 2099 ClinVar
305706 2168 ClinVar
877200 2187 ClinVar
305707 2188 ClinVar
305708 2196 ClinVar
305709 2313 ClinVar
305710 2326 ClinVar
305711 2328 ClinVar
305712 2332 ClinVar
878240 2358 ClinVar
305713 2439 ClinVar
305714 2584 ClinVar
305715 2669 ClinVar
305716 2680 ClinVar
305717 2710 ClinVar
878241 2717 ClinVar
879691 2837 ClinVar
879692 2861 ClinVar
879693 2887 ClinVar
879694 2897 ClinVar
879695 2906 ClinVar
879696 2959 ClinVar
305718 3044 ClinVar
COSN30144284 12 COSMIC
COSN30181513 14 COSMIC
COSN30468557 14 COSMIC
COSN31552930 20 COSMIC
COSN30191461 32 COSMIC
COSN26968906 33 COSMIC
COSN30127146 60 COSMIC
COSN30465366 85 COSMIC
COSN31488333 86 COSMIC
COSN31488570 92 COSMIC
COSN31543163 104 COSMIC
COSN30151751 110 COSMIC
COSN30190431 118 COSMIC
COSN507354 119 COSMIC
COSN31591465 210 COSMIC
COSN20508842 250 COSMIC
COSN5917089 478 COSMIC
COSN22828700 604 COSMIC
COSN26753350 689 COSMIC
COSN21789045 782 COSMIC
COSN15082637 857 COSMIC
COSN15122750 858 COSMIC
COSN27609208 962 COSMIC
COSN24428689 1296 COSMIC
COSN22739937 1361 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs569872151 5 dbSNP
rs898778158 5 dbSNP
rs748195294 6 dbSNP
rs749036787 7 dbSNP
rs931592206 10 dbSNP
rs758583912 13 dbSNP
rs777890480 20 dbSNP
rs887134726 26 dbSNP
rs747352890 27 dbSNP
rs1008239273 30 dbSNP
rs771250959 31 dbSNP
rs529589052 32 dbSNP
rs1019686545 33 dbSNP
rs1286938410 36 dbSNP
rs548141133 38 dbSNP
rs202212392 40 dbSNP
rs560082251 44 dbSNP
rs773852144 47 dbSNP
rs1440317899 49 dbSNP
rs899658098 63 dbSNP
rs1481119889 73 dbSNP
rs1207224203 81 dbSNP
rs1200358058 90 dbSNP
rs1456293091 93 dbSNP
rs996674799 119 dbSNP
rs1790736 120 dbSNP
rs372107215 121 dbSNP
rs1313826199 122 dbSNP
rs1032080797 129 dbSNP
rs570414838 148 dbSNP
rs1373661841 150 dbSNP
rs1332932149 152 dbSNP
rs1444061611 158 dbSNP
rs1400027868 161 dbSNP
rs1337734059 162 dbSNP
rs760779526 166 dbSNP
rs977366671 168 dbSNP
rs769163963 169 dbSNP
rs1021210075 171 dbSNP
rs1419723853 175 dbSNP
rs1265404246 176 dbSNP
rs537566910 186 dbSNP
rs1177038816 187 dbSNP
rs1439247033 189 dbSNP
rs1237358902 193 dbSNP
rs970600317 195 dbSNP
rs549538705 196 dbSNP
rs1031729385 207 dbSNP
rs1254144706 222 dbSNP
rs1198018314 226 dbSNP
rs1378144279 231 dbSNP
rs567943756 235 dbSNP
rs1317016447 236 dbSNP
rs1310722336 251 dbSNP
rs886048562 263 dbSNP
rs1375674961 270 dbSNP
rs772851120 282 dbSNP
rs1316250466 287 dbSNP
rs959705498 292 dbSNP
rs181113902 296 dbSNP
rs769973044 297 dbSNP
rs1400752403 298 dbSNP
rs1302798525 300 dbSNP
rs1454725603 308 dbSNP
rs992562538 313 dbSNP
rs1156868188 314 dbSNP
rs1419392913 314 dbSNP
rs1184017178 319 dbSNP
rs926587486 319 dbSNP
rs886048563 325 dbSNP
rs1253764465 331 dbSNP
rs143907498 348 dbSNP
rs973429498 357 dbSNP
rs948197685 367 dbSNP
rs1322174679 369 dbSNP
rs553822363 369 dbSNP
rs1169445927 381 dbSNP
rs1216209571 381 dbSNP
rs3835327 381 dbSNP
rs397744121 381 dbSNP
rs920111245 381 dbSNP
rs1312372561 387 dbSNP
rs931535237 388 dbSNP
rs1385748058 393 dbSNP
rs1047325440 395 dbSNP
rs1333400343 407 dbSNP
rs376738871 409 dbSNP
rs775755989 410 dbSNP
rs572401751 412 dbSNP
rs890625688 414 dbSNP
rs1366507080 416 dbSNP
rs944938776 419 dbSNP
rs1226929496 423 dbSNP
rs1265204938 425 dbSNP
rs148612796 428 dbSNP
rs1487688393 435 dbSNP
rs765865925 446 dbSNP
rs944066488 447 dbSNP
rs1353751299 449 dbSNP
rs1265284766 452 dbSNP
rs900793504 457 dbSNP
rs1320673422 458 dbSNP
rs1230417616 462 dbSNP
rs1276836025 465 dbSNP
rs1263920697 466 dbSNP
rs1041108595 468 dbSNP
rs368995514 474 dbSNP
rs1325537662 476 dbSNP
rs141182457 490 dbSNP
rs996462572 495 dbSNP
rs899960922 500 dbSNP
rs1292765443 511 dbSNP
rs1465923688 521 dbSNP
rs1210510864 530 dbSNP
rs866365965 531 dbSNP
rs1168484516 537 dbSNP
rs185956229 537 dbSNP
rs1032463264 544 dbSNP
rs1477416311 544 dbSNP
rs1200357135 548 dbSNP
rs1266194749 551 dbSNP
rs1449582587 551 dbSNP
rs879146930 554 dbSNP
rs1196796157 556 dbSNP
rs893518473 557 dbSNP
rs1256520001 558 dbSNP
rs1218573934 562 dbSNP
rs996894148 563 dbSNP
rs1021837690 564 dbSNP
rs1179715377 565 dbSNP
rs576577876 570 dbSNP
rs1231117103 579 dbSNP
rs1330789985 594 dbSNP
rs970566236 598 dbSNP
rs1449224731 607 dbSNP
rs981965286 610 dbSNP
rs1328974267 611 dbSNP
rs1472810116 616 dbSNP
rs999148826 619 dbSNP
rs1173862726 622 dbSNP
rs1031614278 630 dbSNP
rs1376528703 630 dbSNP
rs1178903154 632 dbSNP
rs973423917 634 dbSNP
rs763174697 636 dbSNP
rs1198400996 638 dbSNP
rs1366358298 642 dbSNP
rs1281319124 645 dbSNP
rs1199193274 652 dbSNP
rs1344436403 653 dbSNP
rs1280142798 663 dbSNP
rs1242603700 665 dbSNP
rs1374936119 667 dbSNP
rs886048564 670 dbSNP
rs992529853 676 dbSNP
rs920592912 678 dbSNP
rs543961015 682 dbSNP
rs146218513 684 dbSNP
rs1307992452 686 dbSNP
rs973196092 696 dbSNP
rs1412075901 700 dbSNP
rs1158667047 702 dbSNP
rs574323434 703 dbSNP
rs931528297 704 dbSNP
rs1178477526 708 dbSNP
rs1039213424 717 dbSNP
rs1239512128 721 dbSNP
rs1321414689 726 dbSNP
rs1186090062 730 dbSNP
rs900760872 742 dbSNP
rs1218845768 743 dbSNP
rs983421024 749 dbSNP
rs1261423516 758 dbSNP
rs1351864401 762 dbSNP
rs1285561785 763 dbSNP
rs1245588393 766 dbSNP
rs908838478 766 dbSNP
rs944033759 769 dbSNP
rs1445758993 771 dbSNP
rs768551163 772 dbSNP
rs1298352851 797 dbSNP
rs1401299151 802 dbSNP
rs1053423532 805 dbSNP
rs541706301 806 dbSNP
rs1157682690 808 dbSNP
rs1405554073 824 dbSNP
rs932714164 827 dbSNP
rs1009294284 836 dbSNP
rs1021105232 838 dbSNP
rs1251006534 841 dbSNP
rs1483222420 844 dbSNP
rs1161804290 847 dbSNP
rs79733334 849 dbSNP
rs1178799409 861 dbSNP
rs189731301 867 dbSNP
rs1253627122 871 dbSNP
rs1422928664 874 dbSNP
rs1196008973 876 dbSNP
rs11601325 877 dbSNP
rs1262478665 885 dbSNP
rs1386517161 890 dbSNP
rs577168001 895 dbSNP
rs144432491 898 dbSNP
rs1291816209 910 dbSNP
rs1053440744 915 dbSNP
rs895704948 918 dbSNP
rs543364807 923 dbSNP
rs1463844366 931 dbSNP
rs1301512786 932 dbSNP
rs1014185430 943 dbSNP
rs1022616472 944 dbSNP
rs1296989290 954 dbSNP
rs1436816148 955 dbSNP
rs985262502 962 dbSNP
rs76060170 964 dbSNP
rs531286246 965 dbSNP
rs1363053011 968 dbSNP
rs952991190 969 dbSNP
rs183419313 970 dbSNP
rs908722536 973 dbSNP
rs1489609850 978 dbSNP
rs1273822665 997 dbSNP
rs567905142 1006 dbSNP
rs1245192307 1012 dbSNP
rs1342856446 1013 dbSNP
rs965561444 1014 dbSNP
rs1258425824 1016 dbSNP
rs1200480939 1027 dbSNP
rs976989097 1030 dbSNP
rs1254067643 1031 dbSNP
rs911970986 1039 dbSNP
rs921234184 1040 dbSNP
rs186530202 1041 dbSNP
rs1272730821 1061 dbSNP
rs1043515263 1063 dbSNP
rs191030743 1064 dbSNP
rs911158058 1067 dbSNP
rs926096677 1081 dbSNP
rs922113011 1086 dbSNP
rs1400164098 1087 dbSNP
rs934751519 1091 dbSNP
rs1447054521 1104 dbSNP
rs1187454980 1110 dbSNP
rs565802060 1118 dbSNP
rs1430853408 1119 dbSNP
rs913507993 1127 dbSNP
rs750151193 1153 dbSNP
rs1238615561 1154 dbSNP
rs539741322 1159 dbSNP
rs1042087608 1171 dbSNP
rs1466889586 1184 dbSNP
rs1250677612 1185 dbSNP
rs183186439 1186 dbSNP
rs906278630 1187 dbSNP
rs1014152940 1189 dbSNP
rs1044363688 1190 dbSNP
rs7127024 1191 dbSNP
rs760609909 1202 dbSNP
rs1377151198 1203 dbSNP
rs537531908 1207 dbSNP
rs1434446461 1211 dbSNP
rs994551641 1212 dbSNP
rs766112266 1213 dbSNP
rs1303943645 1216 dbSNP
rs753487920 1217 dbSNP
rs1362535365 1218 dbSNP
rs754686225 1219 dbSNP
rs555941085 1224 dbSNP
rs994738513 1230 dbSNP
rs1382399898 1236 dbSNP
rs574182345 1238 dbSNP
rs1361901348 1240 dbSNP
rs11605548 1248 dbSNP
rs11601405 1254 dbSNP
rs1180338773 1258 dbSNP
rs1437608423 1266 dbSNP
rs965531117 1277 dbSNP
rs976957802 1278 dbSNP
rs373857371 1286 dbSNP
rs146149609 1292 dbSNP
rs1463310384 1296 dbSNP
rs1207523241 1301 dbSNP
rs1237427088 1304 dbSNP
rs553549818 1309 dbSNP
rs1018904896 1310 dbSNP
rs966067375 1313 dbSNP
rs974811513 1314 dbSNP
rs1189929826 1315 dbSNP
rs188509571 1319 dbSNP
rs922081352 1325 dbSNP
rs1419285044 1330 dbSNP
rs1425090335 1338 dbSNP
rs957752708 1341 dbSNP
rs978816890 1348 dbSNP
rs1434117353 1350 dbSNP
rs990362258 1351 dbSNP
rs1186670819 1359 dbSNP
rs1488336454 1361 dbSNP
rs913466747 1367 dbSNP
rs140203885 1373 dbSNP
rs1410005977 1378 dbSNP
rs925951731 1386 dbSNP
rs564944745 1391 dbSNP
rs77807407 1393 dbSNP
rs917076132 1400 dbSNP
rs1247440749 1402 dbSNP
rs949888937 1403 dbSNP
rs1320502483 1405 dbSNP
rs1044334296 1409 dbSNP
rs1291641601 1411 dbSNP
rs563724143 1414 dbSNP
rs781743235 1419 dbSNP
rs930563507 1420 dbSNP
rs547381974 1424 dbSNP
rs1048683968 1425 dbSNP
rs75914794 1436 dbSNP
rs1391680651 1438 dbSNP
rs1326861151 1449 dbSNP
rs543111733 1452 dbSNP
rs1004606330 1456 dbSNP
rs1415314102 1460 dbSNP
rs1227347630 1464 dbSNP
rs1268388559 1465 dbSNP
rs1478080721 1472 dbSNP
rs1448156154 1476 dbSNP
rs995072854 1477 dbSNP
rs1018678633 1481 dbSNP
rs1048928134 1483 dbSNP
rs1487711974 1491 dbSNP
rs1272900202 1494 dbSNP
rs1320593584 1495 dbSNP
rs561400843 1495 dbSNP
rs528993456 1496 dbSNP
rs1226775997 1500 dbSNP
rs1331954508 1506 dbSNP
rs1303691994 1511 dbSNP
rs547246461 1528 dbSNP
rs192714120 1538 dbSNP
rs1392054802 1541 dbSNP
rs1028521441 1546 dbSNP
rs1202002260 1556 dbSNP
rs1466116876 1575 dbSNP
rs533060454 1582 dbSNP
rs551692608 1589 dbSNP
rs1402368372 1590 dbSNP
rs570061594 1596 dbSNP
rs1165710954 1600 dbSNP
rs1018872418 1609 dbSNP
rs901871197 1612 dbSNP
rs1200587854 1629 dbSNP
rs1452131430 1630 dbSNP
rs954284054 1631 dbSNP
rs532435181 1637 dbSNP
rs555805758 1639 dbSNP
rs1459528696 1646 dbSNP
rs377617797 1647 dbSNP
rs1029020292 1652 dbSNP
rs957510022 1662 dbSNP
rs1257789507 1663 dbSNP
rs990721423 1666 dbSNP
rs567725957 1672 dbSNP
rs1472480583 1675 dbSNP
rs535143410 1676 dbSNP
rs1020454456 1677 dbSNP
rs1447231185 1681 dbSNP
rs956265114 1690 dbSNP
rs1378761960 1691 dbSNP
rs2514262 1698 dbSNP
rs183159788 1702 dbSNP
rs1409259629 1703 dbSNP
rs1402325314 1708 dbSNP
rs917378975 1710 dbSNP
rs1173796708 1718 dbSNP
rs1403670438 1720 dbSNP
rs949856463 1732 dbSNP
rs1164235903 1737 dbSNP
rs979898895 1741 dbSNP
rs927121590 1742 dbSNP
rs1181751121 1752 dbSNP
rs545370587 1759 dbSNP
rs1443480627 1774 dbSNP
rs930553882 1776 dbSNP
rs369603394 1777 dbSNP
rs1198800930 1779 dbSNP
rs1347504852 1782 dbSNP
rs938979619 1798 dbSNP
rs557279173 1799 dbSNP
rs1355627093 1806 dbSNP
rs200446327 1807 dbSNP
rs886048565 1807 dbSNP
rs916315686 1807 dbSNP
rs1279767073 1808 dbSNP
rs1335694869 1815 dbSNP
rs1049338014 1825 dbSNP
rs886048566 1828 dbSNP
rs1298434877 1835 dbSNP
rs80147679 1836 dbSNP
rs187653511 1837 dbSNP
rs75578020 1844 dbSNP
rs1352471286 1846 dbSNP
rs76463793 1848 dbSNP
rs77451107 1849 dbSNP
rs61889863 1851 dbSNP
rs748450531 1851 dbSNP
rs940589922 1851 dbSNP
rs1370691300 1854 dbSNP
rs759157298 1854 dbSNP
rs886048567 1854 dbSNP
rs1040250624 1856 dbSNP
rs533020503 1856 dbSNP
rs542972940 1856 dbSNP
rs886048568 1856 dbSNP
rs886048569 1857 dbSNP
rs11227798 1858 dbSNP
rs1215804303 1858 dbSNP
rs1269233722 1858 dbSNP
rs1359182878 1858 dbSNP
rs1436702780 1858 dbSNP
rs147580597 1858 dbSNP
rs1491046777 1858 dbSNP
rs373880828 1858 dbSNP
rs397749289 1858 dbSNP
rs886048570 1858 dbSNP
rs35146220 1859 dbSNP
rs886048571 1859 dbSNP
rs1324275484 1860 dbSNP
rs7936733 1860 dbSNP
rs901795950 1862 dbSNP
rs867214951 1874 dbSNP
rs1408286004 1875 dbSNP
rs1359572577 1877 dbSNP
rs886048572 1878 dbSNP
rs1028469561 1884 dbSNP
rs1225305183 1884 dbSNP
rs1273120095 1887 dbSNP
rs1479099319 1888 dbSNP
rs1482894425 1890 dbSNP
rs1183435195 1897 dbSNP
rs889967000 1898 dbSNP
rs1191513591 1912 dbSNP
rs1000441051 1919 dbSNP
rs1234800969 1923 dbSNP
rs1033705447 1927 dbSNP
rs886048573 1934 dbSNP
rs886048574 1940 dbSNP
rs548811817 1943 dbSNP
rs1181533164 1958 dbSNP
rs774271313 1960 dbSNP
rs748296888 1970 dbSNP
rs1271621959 1973 dbSNP
rs971432483 1981 dbSNP
rs1372681972 1982 dbSNP
rs980200763 1985 dbSNP
rs927120262 2001 dbSNP
rs570209950 2005 dbSNP
rs984706658 2013 dbSNP
rs907820710 2019 dbSNP
rs1020840434 2025 dbSNP
rs1428856335 2026 dbSNP
rs541154026 2031 dbSNP
rs1337131032 2044 dbSNP
rs1393491323 2045 dbSNP
rs981628410 2046 dbSNP
rs1039980270 2052 dbSNP
rs1445303897 2055 dbSNP
rs1178903617 2056 dbSNP
rs922941577 2060 dbSNP
rs1382811119 2062 dbSNP
rs1210199603 2063 dbSNP
rs1349673396 2064 dbSNP
rs886048575 2066 dbSNP
rs1247536474 2072 dbSNP
rs771896989 2078 dbSNP
rs1273099034 2079 dbSNP
rs1354902028 2079 dbSNP
rs886048576 2090 dbSNP
rs1196720324 2091 dbSNP
rs1275595520 2093 dbSNP
rs1373246715 2094 dbSNP
rs1441074258 2095 dbSNP
rs780002066 2096 dbSNP
rs886048577 2099 dbSNP
rs990449428 2100 dbSNP
rs916258667 2105 dbSNP
rs1453683057 2108 dbSNP
rs930360560 2109 dbSNP
rs749055593 2120 dbSNP
rs984575860 2121 dbSNP
rs1407143690 2134 dbSNP
rs907642129 2136 dbSNP
rs1000811992 2140 dbSNP
rs1054707443 2141 dbSNP
rs1486369135 2156 dbSNP
rs1186822812 2166 dbSNP
rs1040218186 2168 dbSNP
rs754783722 2168 dbSNP
rs886048578 2168 dbSNP
rs1488398608 2170 dbSNP
rs1262905778 2174 dbSNP
rs892018374 2175 dbSNP
rs541691229 2177 dbSNP
rs1168457171 2179 dbSNP
rs191420904 2187 dbSNP
rs886048579 2188 dbSNP
rs1412559915 2190 dbSNP
rs1292727722 2191 dbSNP
rs1001605836 2195 dbSNP
rs11822066 2196 dbSNP
rs778619168 2199 dbSNP
rs1290471863 2200 dbSNP
rs1406447390 2209 dbSNP
rs554195108 2218 dbSNP
rs1451375551 2238 dbSNP
rs1344315313 2241 dbSNP
rs1165430829 2243 dbSNP
rs985062656 2251 dbSNP
rs1415083068 2253 dbSNP
rs1186562976 2258 dbSNP
rs563532066 2259 dbSNP
rs907705779 2271 dbSNP
rs1202935272 2272 dbSNP
rs374288210 2275 dbSNP
rs975986914 2276 dbSNP
rs370262108 2281 dbSNP
rs1272699455 2283 dbSNP
rs1219309391 2284 dbSNP
rs1328213603 2288 dbSNP
rs1293706832 2291 dbSNP
rs1381822489 2308 dbSNP
rs1228736861 2309 dbSNP
rs1361035191 2309 dbSNP
rs1272448228 2310 dbSNP
rs1462983181 2313 dbSNP
rs886048580 2313 dbSNP
rs1343234970 2314 dbSNP
rs1462057369 2321 dbSNP
rs567682286 2322 dbSNP
rs1003041156 2326 dbSNP
rs1195892641 2326 dbSNP
rs1374258116 2326 dbSNP
rs1487751927 2326 dbSNP
rs796540356 2326 dbSNP
rs1491234059 2327 dbSNP
rs867071753 2327 dbSNP
rs11227799 2328 dbSNP
rs1491392197 2328 dbSNP
rs766971670 2328 dbSNP
rs1219080503 2329 dbSNP
rs886048581 2332 dbSNP
rs1263977322 2333 dbSNP
rs1303963183 2334 dbSNP
rs1035864868 2337 dbSNP
rs958912566 2341 dbSNP
rs1325178955 2343 dbSNP
rs1391851477 2345 dbSNP
rs1210696601 2346 dbSNP
rs1398071677 2347 dbSNP
rs1206871042 2348 dbSNP
rs1247451957 2349 dbSNP
rs1013189959 2353 dbSNP
rs1461232183 2358 dbSNP
rs1395297508 2359 dbSNP
rs1175063787 2363 dbSNP
rs1053498892 2364 dbSNP
rs1023698554 2367 dbSNP
rs893530593 2369 dbSNP
rs747686059 2371 dbSNP
rs1440034299 2387 dbSNP
rs1447676585 2387 dbSNP
rs1248557262 2390 dbSNP
rs951728995 2407 dbSNP
rs1193736891 2412 dbSNP
rs1483733391 2421 dbSNP
rs1282749332 2425 dbSNP
rs1232322091 2428 dbSNP
rs1345500780 2430 dbSNP
rs1374728652 2432 dbSNP
rs886048582 2439 dbSNP
rs537752551 2441 dbSNP
rs931674596 2452 dbSNP
rs1326350722 2468 dbSNP
rs1390325139 2468 dbSNP
rs907608927 2468 dbSNP
rs1429521984 2477 dbSNP
rs1050182062 2496 dbSNP
rs1314362930 2515 dbSNP
rs1432427661 2519 dbSNP
rs925058745 2521 dbSNP
rs1159474773 2526 dbSNP
rs547113573 2529 dbSNP
rs975849365 2530 dbSNP
rs923115136 2540 dbSNP
rs1475596660 2547 dbSNP
rs1318162068 2550 dbSNP
rs1259651976 2551 dbSNP
rs1387207312 2554 dbSNP
rs773336845 2559 dbSNP
rs1320849488 2560 dbSNP
rs1279432302 2562 dbSNP
rs1205493704 2567 dbSNP
rs1054992934 2569 dbSNP
rs1352506878 2577 dbSNP
rs1329920826 2582 dbSNP
rs886048583 2584 dbSNP
rs760698045 2585 dbSNP
rs1238189159 2592 dbSNP
rs1232962361 2598 dbSNP
rs1010462766 2607 dbSNP
rs1284374240 2615 dbSNP
rs1355562307 2619 dbSNP
rs1294565226 2631 dbSNP
rs1412584881 2643 dbSNP
rs1050380137 2646 dbSNP
rs571746418 2651 dbSNP
rs1226748829 2657 dbSNP
rs1402819007 2662 dbSNP
rs1383210811 2663 dbSNP
rs183547972 2666 dbSNP
rs1046041244 2668 dbSNP
rs116414393 2669 dbSNP
rs1475038286 2670 dbSNP
rs1381574407 2672 dbSNP
rs1242931128 2679 dbSNP
rs77828276 2680 dbSNP
rs1034429151 2684 dbSNP
rs903231017 2685 dbSNP
rs952190790 2705 dbSNP
rs1439820677 2707 dbSNP
rs189502443 2710 dbSNP
rs192454438 2717 dbSNP
rs1230907597 2727 dbSNP
rs1481306448 2733 dbSNP
rs1270442778 2745 dbSNP
rs1432397408 2750 dbSNP
rs1325100562 2754 dbSNP
rs185206750 2755 dbSNP
rs894665204 2758 dbSNP
rs961883626 2765 dbSNP
rs1397313319 2771 dbSNP
rs1013525837 2774 dbSNP
rs776602987 2776 dbSNP
rs1027226198 2794 dbSNP
rs1453843793 2801 dbSNP
rs540764381 2812 dbSNP
rs571282792 2827 dbSNP
rs975955850 2830 dbSNP
rs145684543 2837 dbSNP
rs1474534667 2839 dbSNP
rs148932555 2861 dbSNP
rs757176022 2862 dbSNP
rs538665266 2869 dbSNP
rs1386666906 2874 dbSNP
rs1468904373 2875 dbSNP
rs1014545078 2881 dbSNP
rs553567809 2882 dbSNP
rs1320618848 2884 dbSNP
rs764991694 2891 dbSNP
rs924976421 2892 dbSNP
rs961735812 2893 dbSNP
rs545186050 2909 dbSNP
rs563492120 2911 dbSNP
rs1336635971 2913 dbSNP
rs923082417 2915 dbSNP
rs1324503579 2930 dbSNP
rs530806797 2946 dbSNP
rs1440747563 2950 dbSNP
rs953194589 2952 dbSNP
rs936395339 2959 dbSNP
rs549335985 2961 dbSNP
rs190045472 2965 dbSNP
rs1408497704 2980 dbSNP
rs752119317 2986 dbSNP
rs757994378 2993 dbSNP
rs528535037 3002 dbSNP
rs1396609792 3003 dbSNP
rs1191723902 3005 dbSNP
rs546681598 3017 dbSNP
rs1241241180 3023 dbSNP
rs1233020808 3026 dbSNP
rs946221027 3027 dbSNP
rs1263794917 3030 dbSNP
rs571674945 3044 dbSNP
rs1221585424 3056 dbSNP
rs907485637 3059 dbSNP
rs1234523721 3062 dbSNP
rs947296179 3065 dbSNP
rs1219196506 3072 dbSNP
rs1301671759 3072 dbSNP
rs1374680508 3080 dbSNP
rs1041687054 3084 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084040. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep1 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaaCACAAUCUUG---UCUCCGUUa 5'
             | ||  ||||   :|||||:: 
Target 5' augGCGU--GAACCCAGGAGGCGGa 3'
7 - 29
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084040
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep1
Location of target site ENST00000438189.2 | 3UTR | AAGAGAAUGGCGUGAACCCAGGAGGCGGAGCUUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
75 hsa-miR-3152-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092535 KBTBD8 kelch repeat and BTB domain containing 8 2 6
MIRT461731 NDUFA2 NADH:ubiquinone oxidoreductase subunit A2 2 2
MIRT468456 SET SET nuclear proto-oncogene 2 2
MIRT482192 AHR aryl hydrocarbon receptor 2 2
MIRT507923 BZW1 basic leucine zipper and W2 domains 1 2 4
MIRT512208 C18orf25 chromosome 18 open reading frame 25 2 6
MIRT526238 STARD4 StAR related lipid transfer domain containing 4 2 2
MIRT536131 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT536280 LIMA1 LIM domain and actin binding 1 2 2
MIRT544251 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT548054 GOLGA7 golgin A7 2 2
MIRT563443 ISCA1 iron-sulfur cluster assembly 1 2 2
MIRT565643 SIX4 SIX homeobox 4 2 2
MIRT614870 PDE12 phosphodiesterase 12 2 2
MIRT614923 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT615793 FAM124A family with sequence similarity 124 member A 2 2
MIRT618557 VLDLR very low density lipoprotein receptor 2 2
MIRT622147 SORBS2 sorbin and SH3 domain containing 2 2 2
MIRT622390 RSBN1 round spermatid basic protein 1 2 2
MIRT624185 DDX19B DEAD-box helicase 19B 2 2
MIRT624448 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT625340 TAPBP TAP binding protein 2 2
MIRT625370 IRGQ immunity related GTPase Q 2 2
MIRT627276 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT627746 RAD54L2 RAD54 like 2 2 2
MIRT629578 RFC2 replication factor C subunit 2 2 4
MIRT630537 LGALS8 galectin 8 2 4
MIRT630559 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT630568 SOWAHA sosondowah ankyrin repeat domain family member A 2 4
MIRT630763 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT635424 LRP10 LDL receptor related protein 10 2 2
MIRT636011 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 2
MIRT636337 PHAX phosphorylated adaptor for RNA export 2 2
MIRT638413 POU3F2 POU class 3 homeobox 2 2 2
MIRT639358 INIP INTS3 and NABP interacting protein 2 2
MIRT642124 DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A 2 4
MIRT642828 KIAA0319 KIAA0319 2 2
MIRT644017 NUCB1 nucleobindin 1 2 2
MIRT644038 WWC2 WW and C2 domain containing 2 2 2
MIRT644153 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644649 SNX9 sorting nexin 9 2 2
MIRT645798 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT647633 FAIM2 Fas apoptotic inhibitory molecule 2 2 2
MIRT648528 KIAA1143 KIAA1143 2 2
MIRT648851 PDLIM3 PDZ and LIM domain 3 2 2
MIRT648880 TUBGCP5 tubulin gamma complex associated protein 5 2 2
MIRT650777 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT654200 RNF19B ring finger protein 19B 2 2
MIRT654508 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT655249 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT656089 MTA3 metastasis associated 1 family member 3 2 2
MIRT656599 LRRC55 leucine rich repeat containing 55 2 2
MIRT659194 CYBB cytochrome b-245 beta chain 2 2
MIRT660000 C1orf115 chromosome 1 open reading frame 115 2 4
MIRT661715 KLF8 Kruppel like factor 8 2 2
MIRT661813 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT668360 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT679734 CABP4 calcium binding protein 4 2 2
MIRT708616 NUDT18 nudix hydrolase 18 2 2
MIRT709034 TROVE2 TROVE domain family member 2 2 2
MIRT709573 DMGDH dimethylglycine dehydrogenase 2 2
MIRT709665 AJAP1 adherens junctions associated protein 1 2 2
MIRT709874 TRAF1 TNF receptor associated factor 1 2 2
MIRT710821 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT710883 PARL presenilin associated rhomboid like 2 2
MIRT711547 LCAT lecithin-cholesterol acyltransferase 2 2
MIRT712017 STX1B syntaxin 1B 2 2
MIRT713058 BLVRA biliverdin reductase A 2 2
MIRT713129 THRB thyroid hormone receptor beta 2 2
MIRT713878 MOB3A MOB kinase activator 3A 2 2
MIRT714154 NXPH3 neurexophilin 3 2 2
MIRT719755 FLYWCH1 FLYWCH-type zinc finger 1 2 2
MIRT720213 KCNK1 potassium two pore domain channel subfamily K member 1 2 2
MIRT722728 BRMS1 breast cancer metastasis suppressor 1 2 2
MIRT725652 ABI2 abl interactor 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3152-5p Palbociclib 5330286 NSC758247 approved resistant cell line (T47D)
hsa-miR-3152-5p Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)

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