pre-miRNA Information
pre-miRNA hsa-mir-1245a   
Genomic Coordinates chr2: 188978092 - 188978161
Description Homo sapiens miR-1245a stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1245a
Sequence 45| AAGUGAUCUAAAGGCCUACAU |65
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN31562560 15 COSMIC
COSN26581044 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs906938680 2 dbSNP
rs1159117523 3 dbSNP
rs780486044 6 dbSNP
rs771479866 17 dbSNP
rs1002976932 18 dbSNP
rs1428029219 19 dbSNP
Putative Targets

Gene Information
Gene Symbol TLR6   
Synonyms CD286
Description toll like receptor 6
Transcript NM_006068   
Expression
Putative miRNA Targets on TLR6
3'UTR of TLR6
(miRNA target sites are highlighted)
>TLR6|NM_006068|3'UTR
   1 AAAAATTTAGGAAATTCAACTTAAGAAACCATTATTTACTTGGATGATGGTGAATAGTACAGTCGTAAGTAACTGTCTGG
  81 AGGTGCCTCCATTATCCTCATGCCTTCAGGAAAGACTTAACAAAAACAATGTTTCATCTGGGGAACTGAGCTAGGCGGTG
 161 AGGTTAGCCTGCCAGTTAGAGACAGCCCAGTCTCTTCTGGTTTAATCATTATGTTTCAAATTGAAACAGTCTCTTTTGAG
 241 TAAATGCTCAGTTTTTCAGCTCCTCTCCACTCTGCTTTCCCAAATGGATTCTGTTGTGAGCAAGAGTTTATATGGCTTCA
 321 TGGCAGCAAGGGAACAGTCAACTTCAGCATCATATGCACCAGTCCTCGGAGTGCCCTGTGAATCATATTGGTCTTTGGGT
 401 CAGTGTCATCATTCTCTTCAAGTCTGGGGCTTGGGGAAAAAATTAGATCAGCTACGGCATATAAAAAAGTCTTTTGTTTC
 481 ACATATGTGTAATAGCTTATTTAATTTTTTATCCTGCTACACAAATATGTAATTAACCAATGAGGACTCATGACTTGATA
 561 GTGTATGTATGTAAAGGGATATATGGACTTAATCATAAGCTGTTGAGGTGAAAGACGTGGATCCACCTGCTTTCCAAGAA
 641 AACTCGGCCAAATTTATTTGCAGCTGGATATTGAATGGGACTTTTCTGGTTGTCTTAGAATTCTGGCTAAAGGCTCAAAG
 721 CTGACGAAAGACAGTAACTGCACCAACATGATACTAGACACAGCCAGTCTGGACTTATCAAAAGAGCAGAAAGAGACCAA
 801 TGACTCCCAGTCCGTATTATCCATCTCTAGAAGACTAGAGTCAAAAGCGTGATTAAAGAGTCATTAAGCGGAGGTTCTAG
 881 GCCATAGGGAGATTGCTTTGAATTTCTTGCAGACAAGTGTGAGGGACTCAGCATGGTAGAAGGTAGCCTGGCATCCCACT
 961 CCAAGACTGAAAGCTTGCAGAGTAACAGGAGCACACAGGTTCAGTGCAGCAGATGTGGTGTGGCTTGAGAATTCTTGGAA
1041 GAGCTTGATGAGTGTTTGCTGGAGTCCGAGGGTGGGCACTGGGAACACAGAGACTGGTAAATAGTGTTTGGCAAATACAA
1121 GTGCTTGATGAATATTTGTTGAATGAATAGATGAGTTCTTCCCCCCTGGGGAATTCAGGAGGTGAAAGGTTGGCTTGAGC
1201 ACCCAAAATGGCAGGATGAGAGAAGAGAAGCACTGATAGCAACCTGCCCTCCCATTATTGACATGGTAAAAGGATGTGAA
1281 TTTCTTCACATGGCTTTGACTATGGAAGAGTAGCTGGGCTTGCATTGTCATGACGGGATATCAGCCAACAGGGTAGCCTG
1361 TTGTGCAAAGAAACTATAGCAGTAAGAGGACACGGGGTTAGGCAGAAGAGGGGTTTGGGGTGGAGGTTGCTGCAAGAGGT
1441 CAGCCAGATAATGTGGCCCTGCATCATGGAACTGTGCAATGTGGGGTACACTCAAGGCCCTCCAATAACTCACAGATGTG
1521 CCCTATGAAAAAGCCAGCATTTGGACTCTGCCATAGCAGCTGGCAGGATCATGCTGGCCTGTCTGCCTTATTCAATAGTT
1601 AACTACAGGAAGATCTGCTCCTCTTTGTGTAATACCCTCTTCCCTTGCAATGGCATAGGGACATCTAGAATATAGAGAAG
1681 ACAGAGACAATGGAGGAAGAGTAAAGAAACTGACTATATGCCTTCGTCATTTCACTGCAAGGAAGGCCAAGCAGATTTTT
1761 GAATGAGGTGTGAGATTGCTGTTAAATTGGACTGGCCTGGACATTTTAATCCCTTAAATAGAGGTGCAATGACTAAAGTG
1841 AGATTTGTCACTAAAATTTATGGTATCTGCCCAAGATTCAGGAGTGATGATGGGAGGAGATCCAACAGAACTTTGTTGTA
1921 AGGCAATGGTTAGAGAAAAATGAAGCCCTCGCTTTCTGGACTTAGTTCATTCAATAAACCAGTTTCGGCCAGGCACGTTG
2001 GCTCACATCTATAATCCCAGTACTGTGGGAGGCTGAGGCAGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGC
2081 CAACATGGTGAAACCCTGTCTGTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGTGTGCACCTGTAGTCCCAGCTACT
2161 CGGGAGGCTGAGGCAGGAAAATCACTTGAACCTGGGAGACAGAGGCTGTAGTGAGCTGAGACAGCGCTACTGTACTCCCC
2241 GCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAGTTAAAAGAAAAAAAATCTGGTTTCATAATAGCTGTAACGAAATAA
2321 GCCTTAATGATATTTTATTAGCATCATCTTCTGTCTGCATTAGCCCTTCCTTGCTCTTCAGGAGAACAACATTTGTTTTC
2401 CTCCCTAGGCTCTATCCCAAACGGCACATTCTTCCACAACCCCTGTTGAACAGATTTTTTAAACTGTTGCCTAATCTAAA
2481 AACAATAAAAACAACAAACAACCACAGTAACAACAACGACAAAAAAAACTGCCACAGATTCTAAATAATCAGATCTTTTT
2561 AAATGGTATCAATGTTTCCCACAAAATATTGTTGACATTGAAAATATAGAATTTTAGCATTAATTTTGTTAAACCTACAT
2641 CCCCTCGGCAGAGGGGCCTCCCTGCATCCCAGTGGAAAGTAGGTTCCTCACAGTCCTCTCCGTCACATTCTTCCCATTTC
2721 TTTTCTTCACAGAACACATCACTGTCTAAAATTATCTTGTTTGCTTAGTTGCTTACTCATCTTCTTCTTCTCTCCTCTGA
2801 AGTCTAAGCTCCAGGAAAAAGGGAGACTTCTCCACCTGTTCCCTGCCTCTCCCCAGTGCCGAGGGGACACTGTGCACCCC
2881 ATTGTAGATGCGCAGTAAAAACTCGTGGGATGAGCAAATGACTCTGAAACGGTCCCATGCGGGAAATGTCCATGAAGTCC
2961 TGGATTTTATCTAAAAAGCCCAGGCAGGGGGGGGCGGGGGCGGCGGGGCTACAGTTCCACGCTGAGCTGCCTCCTGGCCG
3041 CTCGTCCCCGCCGCAGTGCCTGGGCGGCCCGGGCGCCCGACCTTGGCCGTGGACACCTTCGCGGTGGGTGCTGCTCCTCC
3121 CCATCTGCCACTGGAAGATGCTGGGGCGACCCGGCTCCAGGTTTAGCAGGACACTGAGAAAAGGGAATGGCTGCCTTTCG
3201 GAGGCTGGGTGAGCCCTTCTCTGTGCCTCACCTGCCCGCCCCACAGCGGCCCTGCACCTCGTCCCACGGGGCCCATTGCC
3281 CCGGTAGGATGCGCGCTTTTGTTTTGAGGGTCAGGCATCTTCCCTGCCGTCGTTTCTGGGAGGTTGAAAAATTGATCCAG
3361 AAAGACCTAAAACAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uacaUCCGGAAAUCUAGUGAa 5'
              ||||   |:||||||| 
Target 5' gctgAGGCAGGTGGATCACTt 3'
2032 - 2052 157.00 -18.50
2
miRNA  3' uacAUCCGGAA---AUCUAGUGAa 5'
             |||||| |    ||||::|| 
Target 5' ttcTAGGCCATAGGGAGATTGCTt 3'
875 - 898 130.00 -13.00
3
miRNA  3' uacAUCCGGAAAUCUAGUGAa 5'
             | ||:||||:|:||| | 
Target 5' ataTTGGTCTTTGGGTCAGTg 3'
385 - 405 126.00 -16.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30517717 2 COSMIC
COSN31526668 6 COSMIC
COSN31506966 10 COSMIC
COSN31483482 97 COSMIC
COSN29161466 132 COSMIC
COSN30136720 135 COSMIC
COSN1083572 138 COSMIC
COSN31603328 156 COSMIC
COSN9039901 182 COSMIC
COSN31962256 183 COSMIC
COSN15670252 870 COSMIC
COSN15271152 916 COSMIC
COSN26360604 1249 COSMIC
COSN14928706 1361 COSMIC
COSN17525067 1543 COSMIC
COSN8614582 2126 COSMIC
COSN16151973 2146 COSMIC
COSN17279199 2279 COSMIC
COSN9789858 2312 COSMIC
COSN5154907 2446 COSMIC
COSN6830184 2891 COSMIC
COSN1296775 2936 COSMIC
COSN20121050 2990 COSMIC
COSN15818618 3044 COSMIC
COSN31962255 3153 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1262201427 4 dbSNP
rs1009595948 5 dbSNP
rs1206201535 6 dbSNP
rs554793923 7 dbSNP
rs749793006 25 dbSNP
rs1325312449 27 dbSNP
rs200689482 29 dbSNP
rs772377690 30 dbSNP
rs555947603 31 dbSNP
rs1213518892 37 dbSNP
rs1362016419 43 dbSNP
rs1229135285 48 dbSNP
rs1485052855 52 dbSNP
rs1332401125 53 dbSNP
rs5743823 55 dbSNP
rs1424949949 60 dbSNP
rs1159047017 64 dbSNP
rs150514907 65 dbSNP
rs1172498851 69 dbSNP
rs1159414506 81 dbSNP
rs1478675632 95 dbSNP
rs1375128854 99 dbSNP
rs1049257467 108 dbSNP
rs924743299 112 dbSNP
rs994956161 121 dbSNP
rs1378797140 124 dbSNP
rs1176276169 127 dbSNP
rs898276951 136 dbSNP
rs977852353 143 dbSNP
rs1438641389 146 dbSNP
rs1238384593 148 dbSNP
rs949084178 151 dbSNP
rs1286284587 156 dbSNP
rs113216819 157 dbSNP
rs1207388703 160 dbSNP
rs1257196210 161 dbSNP
rs1483310040 174 dbSNP
rs1440482538 175 dbSNP
rs1177068915 187 dbSNP
rs1249048184 188 dbSNP
rs34400891 189 dbSNP
rs780728380 189 dbSNP
rs1179727701 190 dbSNP
rs1441914640 190 dbSNP
rs1394671364 199 dbSNP
rs939759536 209 dbSNP
rs990541851 210 dbSNP
rs565017454 226 dbSNP
rs1461547105 228 dbSNP
rs76053915 233 dbSNP
rs5743824 234 dbSNP
rs1448685078 240 dbSNP
rs961212994 248 dbSNP
rs1015342769 252 dbSNP
rs35794704 257 dbSNP
rs1370007254 265 dbSNP
rs979290252 273 dbSNP
rs1238083591 277 dbSNP
rs1256047781 286 dbSNP
rs1376312918 290 dbSNP
rs1312204940 294 dbSNP
rs1008273793 300 dbSNP
rs1256710002 304 dbSNP
rs1459509777 311 dbSNP
rs1444717873 313 dbSNP
rs1252704600 315 dbSNP
rs891244255 317 dbSNP
rs55695972 321 dbSNP
rs562122496 339 dbSNP
rs1427994085 341 dbSNP
rs893112438 357 dbSNP
rs1054725485 360 dbSNP
rs1157436635 364 dbSNP
rs5743825 367 dbSNP
rs55919915 368 dbSNP
rs528143498 374 dbSNP
rs1045967700 375 dbSNP
rs950197717 377 dbSNP
rs1434049414 378 dbSNP
rs746484354 379 dbSNP
rs1367949268 397 dbSNP
rs1471615801 399 dbSNP
rs1019365568 406 dbSNP
rs1319409917 409 dbSNP
rs1219739131 410 dbSNP
rs1273109986 411 dbSNP
rs1450172691 414 dbSNP
rs1236618880 416 dbSNP
rs186999335 420 dbSNP
rs1224328493 422 dbSNP
rs937705907 424 dbSNP
rs563032993 428 dbSNP
rs1444014685 430 dbSNP
rs1485695228 431 dbSNP
rs1191811092 432 dbSNP
rs1425818334 449 dbSNP
rs545345069 452 dbSNP
rs1478192640 453 dbSNP
rs777313816 455 dbSNP
rs974021001 456 dbSNP
rs1166702890 459 dbSNP
rs1350085830 461 dbSNP
rs1429533474 466 dbSNP
rs1295991814 471 dbSNP
rs961244265 475 dbSNP
rs1400090091 476 dbSNP
rs576130298 487 dbSNP
rs576438376 489 dbSNP
rs1290981013 493 dbSNP
rs1316729948 498 dbSNP
rs1286904426 505 dbSNP
rs1214643095 516 dbSNP
rs1015014089 517 dbSNP
rs576737216 519 dbSNP
rs1187392483 522 dbSNP
rs1236797176 526 dbSNP
rs758012649 529 dbSNP
rs1164954322 537 dbSNP
rs1414194821 550 dbSNP
rs1418868655 551 dbSNP
rs556577166 555 dbSNP
rs1362127584 557 dbSNP
rs1419743570 558 dbSNP
rs558443438 559 dbSNP
rs143167615 561 dbSNP
rs1450771447 562 dbSNP
rs905134744 576 dbSNP
rs1372982676 579 dbSNP
rs1238504119 583 dbSNP
rs753012556 587 dbSNP
rs1043683704 600 dbSNP
rs759141571 607 dbSNP
rs913743962 608 dbSNP
rs1449186920 613 dbSNP
rs1357804322 616 dbSNP
rs1276529154 617 dbSNP
rs368612410 624 dbSNP
rs1296885501 628 dbSNP
rs1033386209 631 dbSNP
rs998861780 638 dbSNP
rs903477529 645 dbSNP
rs1403200335 646 dbSNP
rs574702852 649 dbSNP
rs1045998792 650 dbSNP
rs1163529849 671 dbSNP
rs181471893 679 dbSNP
rs554451466 680 dbSNP
rs953359096 687 dbSNP
rs534833269 695 dbSNP
rs1054899985 703 dbSNP
rs867338374 725 dbSNP
rs1027585783 726 dbSNP
rs973634555 737 dbSNP
rs1444983866 748 dbSNP
rs1311979497 754 dbSNP
rs1378134870 759 dbSNP
rs1233786561 778 dbSNP
rs1273303672 779 dbSNP
rs1421295130 784 dbSNP
rs1192836497 786 dbSNP
rs1488583924 795 dbSNP
rs556226412 801 dbSNP
rs1279237768 813 dbSNP
rs371194044 814 dbSNP
rs1457301397 825 dbSNP
rs550554965 843 dbSNP
rs1218066651 846 dbSNP
rs1015087752 848 dbSNP
rs5743826 849 dbSNP
rs1197654640 851 dbSNP
rs896254013 862 dbSNP
rs188639760 869 dbSNP
rs919610929 870 dbSNP
rs1002338567 871 dbSNP
rs1337393915 874 dbSNP
rs904872682 875 dbSNP
rs539981222 888 dbSNP
rs1218495231 889 dbSNP
rs1401389470 899 dbSNP
rs570857015 910 dbSNP
rs946618478 914 dbSNP
rs1321814199 917 dbSNP
rs1038476912 920 dbSNP
rs1333111560 927 dbSNP
rs183861776 933 dbSNP
rs908489828 934 dbSNP
rs1269622877 937 dbSNP
rs892385290 960 dbSNP
rs1216651423 965 dbSNP
rs986667003 970 dbSNP
rs754377590 978 dbSNP
rs1290062670 982 dbSNP
rs1458039066 990 dbSNP
rs1209092802 996 dbSNP
rs944540515 997 dbSNP
rs1199154833 999 dbSNP
rs1348832002 1009 dbSNP
rs766949295 1010 dbSNP
rs191428611 1013 dbSNP
rs1173383337 1025 dbSNP
rs200238686 1027 dbSNP
rs1000293700 1037 dbSNP
rs904483425 1039 dbSNP
rs1397774260 1052 dbSNP
rs1041760118 1053 dbSNP
rs1457714830 1064 dbSNP
rs772610966 1065 dbSNP
rs3043438 1066 dbSNP
rs373682521 1066 dbSNP
rs2381288 1067 dbSNP
rs1401992993 1068 dbSNP
rs200462517 1068 dbSNP
rs758405816 1068 dbSNP
rs112453619 1069 dbSNP
rs1243771106 1069 dbSNP
rs1263403614 1077 dbSNP
rs1358238638 1079 dbSNP
rs1209989775 1081 dbSNP
rs973375937 1095 dbSNP
rs957648975 1096 dbSNP
rs760857145 1099 dbSNP
rs1264488562 1102 dbSNP
rs1423792612 1103 dbSNP
rs773280964 1104 dbSNP
rs1370498739 1112 dbSNP
rs993428762 1118 dbSNP
rs1246263958 1119 dbSNP
rs1214494282 1122 dbSNP
rs967361509 1128 dbSNP
rs1024577470 1139 dbSNP
rs1470000399 1141 dbSNP
rs1358945566 1144 dbSNP
rs960254444 1149 dbSNP
rs1298936857 1159 dbSNP
rs1034904036 1161 dbSNP
rs1014491410 1162 dbSNP
rs767634799 1164 dbSNP
rs566008326 1165 dbSNP
rs1001967813 1167 dbSNP
rs753173838 1167 dbSNP
rs762088791 1168 dbSNP
rs5743827 1179 dbSNP
rs5743828 1184 dbSNP
rs55654148 1188 dbSNP
rs1038103481 1197 dbSNP
rs1260763367 1205 dbSNP
rs1482646767 1211 dbSNP
rs745844807 1221 dbSNP
rs56205810 1231 dbSNP
rs55943136 1239 dbSNP
rs532119686 1243 dbSNP
rs5743829 1249 dbSNP
rs1424759052 1250 dbSNP
rs5743830 1251 dbSNP
rs386673687 1252 dbSNP
rs890304457 1258 dbSNP
rs56339544 1259 dbSNP
rs1159504697 1263 dbSNP
rs1397712312 1271 dbSNP
rs1464618394 1278 dbSNP
rs5743831 1290 dbSNP
rs1465918233 1300 dbSNP
rs921112794 1301 dbSNP
rs975684967 1302 dbSNP
rs1374414422 1304 dbSNP
rs1318273985 1305 dbSNP
rs1037695599 1315 dbSNP
rs1307281473 1319 dbSNP
rs1311090531 1323 dbSNP
rs1230522205 1326 dbSNP
rs940677865 1328 dbSNP
rs150189466 1331 dbSNP
rs926061553 1334 dbSNP
rs1413856039 1335 dbSNP
rs907845013 1338 dbSNP
rs1179426134 1341 dbSNP
rs977476576 1342 dbSNP
rs572260288 1346 dbSNP
rs558838563 1351 dbSNP
rs993108495 1359 dbSNP
rs967390612 1368 dbSNP
rs1379274533 1370 dbSNP
rs1470209863 1371 dbSNP
rs927485341 1380 dbSNP
rs1397779425 1390 dbSNP
rs1448794508 1392 dbSNP
rs1024272888 1393 dbSNP
rs993089190 1394 dbSNP
rs1216952376 1396 dbSNP
rs1178297686 1397 dbSNP
rs959248593 1413 dbSNP
rs1256729012 1414 dbSNP
rs763558893 1414 dbSNP
rs45536338 1419 dbSNP
rs1205741606 1423 dbSNP
rs930450992 1423 dbSNP
rs1253507462 1426 dbSNP
rs1487656223 1430 dbSNP
rs577450507 1432 dbSNP
rs995437143 1438 dbSNP
rs557041363 1439 dbSNP
rs1477545008 1451 dbSNP
rs1031053970 1453 dbSNP
rs1312125630 1455 dbSNP
rs899318568 1456 dbSNP
rs1278665531 1462 dbSNP
rs1349116403 1465 dbSNP
rs55881794 1467 dbSNP
rs147692964 1472 dbSNP
rs1235823115 1473 dbSNP
rs1003892879 1480 dbSNP
rs1050314730 1486 dbSNP
rs1345530966 1487 dbSNP
rs1398910163 1491 dbSNP
rs1276849919 1498 dbSNP
rs1308073021 1504 dbSNP
rs995954812 1514 dbSNP
rs899280172 1522 dbSNP
rs1320324336 1525 dbSNP
rs777271822 1528 dbSNP
rs758057251 1530 dbSNP
rs886775657 1534 dbSNP
rs1050684060 1551 dbSNP
rs531751623 1553 dbSNP
rs1292854339 1557 dbSNP
rs1488001640 1563 dbSNP
rs1300871889 1564 dbSNP
rs1260910633 1572 dbSNP
rs899772406 1576 dbSNP
rs1447153854 1579 dbSNP
rs1039612900 1592 dbSNP
rs1476325811 1593 dbSNP
rs1187070562 1595 dbSNP
rs1412722305 1598 dbSNP
rs1403404077 1599 dbSNP
rs1359697680 1602 dbSNP
rs1365877639 1607 dbSNP
rs1418523814 1614 dbSNP
rs1037769176 1616 dbSNP
rs1341859087 1618 dbSNP
rs1175487352 1621 dbSNP
rs935848234 1623 dbSNP
rs1436624065 1630 dbSNP
rs1378615128 1632 dbSNP
rs1284128787 1634 dbSNP
rs1377415308 1635 dbSNP
rs1230454631 1636 dbSNP
rs1315959377 1638 dbSNP
rs1158257849 1647 dbSNP
rs1353323434 1657 dbSNP
rs188076856 1658 dbSNP
rs977505714 1660 dbSNP
rs5743832 1669 dbSNP
rs917331601 1680 dbSNP
rs1216333742 1682 dbSNP
rs1236890358 1684 dbSNP
rs1471683347 1688 dbSNP
rs1185235900 1689 dbSNP
rs1483181629 1700 dbSNP
rs1438640407 1703 dbSNP
rs1156488022 1708 dbSNP
rs1258792284 1715 dbSNP
rs1057431563 1716 dbSNP
rs992868532 1722 dbSNP
rs1400843220 1723 dbSNP
rs1350846084 1725 dbSNP
rs2890664 1726 dbSNP
rs1337750241 1737 dbSNP
rs5743833 1738 dbSNP
rs914717903 1753 dbSNP
rs1351474023 1754 dbSNP
rs1218788759 1765 dbSNP
rs1318389949 1776 dbSNP
rs1440676104 1778 dbSNP
rs866556732 1779 dbSNP
rs552380385 1787 dbSNP
rs1205505272 1788 dbSNP
rs1243484858 1793 dbSNP
rs1457157733 1794 dbSNP
rs989241348 1802 dbSNP
rs956620473 1812 dbSNP
rs532060839 1823 dbSNP
rs1379668134 1824 dbSNP
rs2381289 1833 dbSNP
rs1015005760 1843 dbSNP
rs1471221395 1844 dbSNP
rs1398131849 1849 dbSNP
rs1399954209 1851 dbSNP
rs1003924035 1860 dbSNP
rs886891927 1862 dbSNP
rs1029363402 1863 dbSNP
rs998290207 1866 dbSNP
rs1297660549 1869 dbSNP
rs767002414 1878 dbSNP
rs527632061 1882 dbSNP
rs2381290 1890 dbSNP
rs1225195405 1894 dbSNP
rs1263693816 1896 dbSNP
rs1040046683 1899 dbSNP
rs996026646 1905 dbSNP
rs1252205799 1915 dbSNP
rs1437999349 1924 dbSNP
rs1197766014 1929 dbSNP
rs529702589 1947 dbSNP
rs1000079449 1950 dbSNP
rs1423594311 1951 dbSNP
rs1016018852 1963 dbSNP
rs904364892 1964 dbSNP
rs1041607799 1967 dbSNP
rs945861137 1969 dbSNP
rs917361040 1986 dbSNP
rs1057223109 1987 dbSNP
rs1261789070 1988 dbSNP
rs886520124 1990 dbSNP
rs937352646 1997 dbSNP
rs1347408670 2001 dbSNP
rs927292308 2004 dbSNP
rs1405685937 2006 dbSNP
rs1486592680 2010 dbSNP
rs560763483 2013 dbSNP
rs577002878 2016 dbSNP
rs906135967 2017 dbSNP
rs184870649 2044 dbSNP
rs1208814785 2054 dbSNP
rs1287373567 2061 dbSNP
rs983622427 2066 dbSNP
rs1199560403 2067 dbSNP
rs572398685 2069 dbSNP
rs954864205 2070 dbSNP
rs1477098342 2084 dbSNP
rs947588501 2096 dbSNP
rs1339794946 2102 dbSNP
rs1029381224 2105 dbSNP
rs1161664982 2118 dbSNP
rs1294885060 2124 dbSNP
rs997924532 2125 dbSNP
rs565060184 2126 dbSNP
rs1358738390 2130 dbSNP
rs1380392995 2135 dbSNP
rs1297656019 2137 dbSNP
rs145451970 2141 dbSNP
rs1000262976 2143 dbSNP
rs1457606677 2144 dbSNP
rs904480642 2145 dbSNP
rs1167593497 2146 dbSNP
rs1222796573 2150 dbSNP
rs1284633294 2153 dbSNP
rs935131438 2158 dbSNP
rs1041638978 2161 dbSNP
rs1010100793 2162 dbSNP
rs895621806 2173 dbSNP
rs1263118737 2183 dbSNP
rs1423593077 2191 dbSNP
rs76137046 2202 dbSNP
rs987180122 2203 dbSNP
rs151304229 2204 dbSNP
rs1158280995 2205 dbSNP
rs558701377 2207 dbSNP
rs1429765581 2212 dbSNP
rs927291732 2213 dbSNP
rs1385635612 2216 dbSNP
rs1208809161 2220 dbSNP
rs761989213 2224 dbSNP
rs774600731 2225 dbSNP
rs142441314 2226 dbSNP
rs908156646 2230 dbSNP
rs983640613 2231 dbSNP
rs193244342 2240 dbSNP
rs923404705 2241 dbSNP
rs529457495 2245 dbSNP
rs1016089431 2246 dbSNP
rs1328216484 2250 dbSNP
rs1005114457 2251 dbSNP
rs764261893 2252 dbSNP
rs1299291535 2261 dbSNP
rs534961884 2266 dbSNP
rs12645200 2275 dbSNP
rs1328235219 2276 dbSNP
rs1464367338 2277 dbSNP
rs1400105559 2282 dbSNP
rs1168979999 2291 dbSNP
rs1377159656 2291 dbSNP
rs558691131 2292 dbSNP
rs999889681 2311 dbSNP
rs540939448 2313 dbSNP
rs569603388 2314 dbSNP
rs1330261099 2317 dbSNP
rs1020224933 2318 dbSNP
rs905874332 2323 dbSNP
rs1307038541 2324 dbSNP
rs1311109622 2329 dbSNP
rs1375361220 2330 dbSNP
rs1222160557 2347 dbSNP
rs1044382665 2351 dbSNP
rs1324715336 2354 dbSNP
rs369218140 2373 dbSNP
rs1454408770 2374 dbSNP
rs893387542 2383 dbSNP
rs895654379 2384 dbSNP
rs1457144583 2392 dbSNP
rs770860360 2401 dbSNP
rs760660390 2406 dbSNP
rs1035493060 2422 dbSNP
rs1197415842 2423 dbSNP
rs1197172013 2445 dbSNP
rs1001765620 2452 dbSNP
rs1342825453 2457 dbSNP
rs905985330 2459 dbSNP
rs73808601 2460 dbSNP
rs1352577852 2461 dbSNP
rs1463139665 2464 dbSNP
rs1298408592 2467 dbSNP
rs188620339 2477 dbSNP
rs1366277241 2481 dbSNP
rs1402636703 2482 dbSNP
rs942050695 2488 dbSNP
rs376254476 2492 dbSNP
rs202032371 2495 dbSNP
rs886420754 2497 dbSNP
rs1051963347 2498 dbSNP
rs547451646 2499 dbSNP
rs1271268378 2503 dbSNP
rs1444911157 2507 dbSNP
rs933542846 2514 dbSNP
rs527552150 2517 dbSNP
rs1224868600 2518 dbSNP
rs201615840 2520 dbSNP
rs151312242 2521 dbSNP
rs974978653 2528 dbSNP
rs1417057013 2529 dbSNP
rs1480699701 2529 dbSNP
rs764987392 2529 dbSNP
rs1430146685 2538 dbSNP
rs34095756 2541 dbSNP
rs1393602528 2543 dbSNP
rs565208201 2549 dbSNP
rs772660457 2564 dbSNP
rs943515625 2565 dbSNP
rs183697322 2569 dbSNP
rs978477031 2572 dbSNP
rs144408528 2575 dbSNP
rs1365689124 2592 dbSNP
rs1019922376 2609 dbSNP
rs6822503 2628 dbSNP
rs1156396984 2629 dbSNP
rs959977089 2630 dbSNP
rs1215592044 2631 dbSNP
rs562579840 2639 dbSNP
rs543892924 2643 dbSNP
rs1312240830 2644 dbSNP
rs1357620648 2646 dbSNP
rs574861725 2647 dbSNP
rs73236630 2649 dbSNP
rs1488012425 2657 dbSNP
rs1214970380 2668 dbSNP
rs778727707 2673 dbSNP
rs1183753556 2683 dbSNP
rs1486708151 2687 dbSNP
rs1003375382 2698 dbSNP
rs1001397900 2701 dbSNP
rs905677863 2702 dbSNP
rs1385247044 2705 dbSNP
rs970089982 2707 dbSNP
rs1316837560 2721 dbSNP
rs1211589233 2728 dbSNP
rs765831085 2731 dbSNP
rs1347503333 2737 dbSNP
rs1431902862 2748 dbSNP
rs1016368872 2761 dbSNP
rs1302581168 2766 dbSNP
rs1381046020 2773 dbSNP
rs1248375348 2779 dbSNP
rs1348675383 2782 dbSNP
rs1006225328 2785 dbSNP
rs1316067460 2788 dbSNP
rs1353076098 2792 dbSNP
rs139542236 2792 dbSNP
rs543939613 2792 dbSNP
rs1011573210 2794 dbSNP
rs113972196 2799 dbSNP
rs1053800875 2816 dbSNP
rs1238164823 2823 dbSNP
rs1243444391 2823 dbSNP
rs759607780 2823 dbSNP
rs1469153268 2824 dbSNP
rs1156352045 2826 dbSNP
rs999087841 2833 dbSNP
rs1401728685 2834 dbSNP
rs142339799 2861 dbSNP
rs572376647 2866 dbSNP
rs1454980411 2871 dbSNP
rs1337603813 2875 dbSNP
rs933111578 2875 dbSNP
rs1440323795 2877 dbSNP
rs375725711 2882 dbSNP
rs1281317634 2884 dbSNP
rs921677136 2885 dbSNP
rs1224218164 2890 dbSNP
rs1295407006 2891 dbSNP
rs768363953 2892 dbSNP
rs902117360 2903 dbSNP
rs1039682246 2904 dbSNP
rs1436816703 2905 dbSNP
rs943562453 2914 dbSNP
rs1312801381 2916 dbSNP
rs925418348 2920 dbSNP
rs774774175 2922 dbSNP
rs947085510 2930 dbSNP
rs1470249735 2931 dbSNP
rs1415951489 2936 dbSNP
rs912975541 2938 dbSNP
rs139099186 2940 dbSNP
rs959953833 2941 dbSNP
rs1399705075 2952 dbSNP
rs983784766 2953 dbSNP
rs1035639851 2957 dbSNP
rs980404528 2960 dbSNP
rs1336416100 2970 dbSNP
rs1404485591 2979 dbSNP
rs969921150 2980 dbSNP
rs1016479460 2985 dbSNP
rs6852012 2986 dbSNP
rs1006004625 2987 dbSNP
rs139432551 2987 dbSNP
rs771312785 2987 dbSNP
rs386673686 2988 dbSNP
rs867819415 2988 dbSNP
rs1026339250 2989 dbSNP
rs376145340 2990 dbSNP
rs1406624004 2991 dbSNP
rs146838719 2991 dbSNP
rs970160371 2991 dbSNP
rs1023038847 2992 dbSNP
rs1325635318 2992 dbSNP
rs901813615 2993 dbSNP
rs1039305749 2994 dbSNP
rs1259661738 2994 dbSNP
rs1288872687 2995 dbSNP
rs1445610015 2995 dbSNP
rs200182418 2995 dbSNP
rs1195845874 2996 dbSNP
rs1374018139 2997 dbSNP
rs1444195870 2999 dbSNP
rs1214574593 3000 dbSNP
rs1446551138 3001 dbSNP
rs146201413 3005 dbSNP
rs1384223986 3007 dbSNP
rs1207188195 3008 dbSNP
rs1031638639 3013 dbSNP
rs999516967 3014 dbSNP
rs1365662447 3018 dbSNP
rs1354672362 3020 dbSNP
rs556508761 3021 dbSNP
rs1030276009 3025 dbSNP
rs536330961 3029 dbSNP
rs1207443319 3032 dbSNP
rs945522945 3034 dbSNP
rs567266796 3036 dbSNP
rs1357938471 3040 dbSNP
rs1181974156 3041 dbSNP
rs1245243272 3043 dbSNP
rs1038778081 3044 dbSNP
rs141657685 3049 dbSNP
rs1052841516 3050 dbSNP
rs938372163 3052 dbSNP
rs929252220 3053 dbSNP
rs1319861739 3056 dbSNP
rs573418462 3065 dbSNP
rs980053150 3066 dbSNP
rs970415973 3068 dbSNP
rs554952077 3070 dbSNP
rs1476120136 3071 dbSNP
rs1269386739 3074 dbSNP
rs1323236106 3075 dbSNP
rs1388852129 3078 dbSNP
rs1265411398 3081 dbSNP
rs1461909439 3087 dbSNP
rs1176837370 3089 dbSNP
rs1421366651 3092 dbSNP
rs1185903101 3093 dbSNP
rs909133685 3095 dbSNP
rs984613763 3098 dbSNP
rs950541653 3100 dbSNP
rs1026370954 3101 dbSNP
rs527289528 3102 dbSNP
rs1218132378 3103 dbSNP
rs7664687 3107 dbSNP
rs551689317 3108 dbSNP
rs1297265022 3115 dbSNP
rs1393677388 3116 dbSNP
rs1392665347 3117 dbSNP
rs117609754 3122 dbSNP
rs562679704 3123 dbSNP
rs957402920 3132 dbSNP
rs1313163086 3134 dbSNP
rs548939048 3139 dbSNP
rs1337455924 3147 dbSNP
rs1032129962 3148 dbSNP
rs12650224 3152 dbSNP
rs371765058 3153 dbSNP
rs865929801 3155 dbSNP
rs1271440179 3161 dbSNP
rs1268300606 3167 dbSNP
rs746026794 3169 dbSNP
rs572443103 3170 dbSNP
rs1369822560 3182 dbSNP
rs1431085016 3199 dbSNP
rs1326231949 3200 dbSNP
rs892607805 3203 dbSNP
rs955841737 3204 dbSNP
rs1463219990 3209 dbSNP
rs561068053 3213 dbSNP
rs1308071222 3222 dbSNP
rs751546134 3224 dbSNP
rs554003928 3235 dbSNP
rs938397979 3237 dbSNP
rs1403574089 3238 dbSNP
rs540979374 3240 dbSNP
rs1368739226 3245 dbSNP
rs928398569 3247 dbSNP
rs900023135 3248 dbSNP
rs1309437313 3249 dbSNP
rs73236629 3255 dbSNP
rs375369046 3258 dbSNP
rs545275292 3260 dbSNP
rs73236628 3261 dbSNP
rs58498019 3267 dbSNP
rs919051044 3270 dbSNP
rs928969581 3276 dbSNP
rs536468937 3282 dbSNP
rs966559326 3283 dbSNP
rs1231537879 3286 dbSNP
rs570922011 3289 dbSNP
rs138575059 3292 dbSNP
rs771868415 3293 dbSNP
rs989982050 3293 dbSNP
rs553916013 3294 dbSNP
rs1009798045 3295 dbSNP
rs936119370 3296 dbSNP
rs1346578795 3304 dbSNP
rs1303688141 3314 dbSNP
rs892647489 3315 dbSNP
rs1442724819 3319 dbSNP
rs924704971 3319 dbSNP
rs533917833 3328 dbSNP
rs1035221308 3329 dbSNP
rs955417606 3332 dbSNP
rs1297424594 3335 dbSNP
rs571256288 3340 dbSNP
rs1003712618 3343 dbSNP
rs1188794631 3344 dbSNP
rs1242186136 3351 dbSNP
rs906970860 3364 dbSNP
rs1442220576 3366 dbSNP
rs551422410 3380 dbSNP
rs1413930206 3396 dbSNP
rs761397981 3399 dbSNP
rs948405905 3404 dbSNP
rs887422744 3408 dbSNP
rs964224117 3410 dbSNP
rs1356182830 3421 dbSNP
rs538126263 3430 dbSNP
rs1380792848 3431 dbSNP
rs929188926 3450 dbSNP
rs1017095620 3465 dbSNP
rs1372714447 3480 dbSNP
rs1432936089 3481 dbSNP
rs1394611516 3482 dbSNP
rs773927439 3483 dbSNP
rs976358511 3488 dbSNP
rs569071027 3496 dbSNP
rs1459672679 3506 dbSNP
rs1026083614 3513 dbSNP
rs910655473 3514 dbSNP
rs986203018 3515 dbSNP
rs1237498572 3516 dbSNP
rs1406193845 3519 dbSNP
rs552644069 3523 dbSNP
rs79208141 3525 dbSNP
rs1022272992 3528 dbSNP
rs866691498 3533 dbSNP
rs1414889790 3542 dbSNP
rs529079894 3562 dbSNP
rs6815827 3563 dbSNP
rs1209439062 3564 dbSNP
rs1416325093 3566 dbSNP
rs1045387818 3574 dbSNP
rs1485052126 3579 dbSNP
rs1012879718 3581 dbSNP
rs141752614 3585 dbSNP
rs1235954495 3593 dbSNP
rs780614280 3595 dbSNP
rs905333428 3604 dbSNP
rs192833074 3618 dbSNP
rs1282329863 3626 dbSNP
rs1012582585 3632 dbSNP
rs1321174548 3633 dbSNP
rs1054320879 3634 dbSNP
rs1224098559 3638 dbSNP
rs1375341807 3641 dbSNP
rs1201888527 3645 dbSNP
rs887450688 3647 dbSNP
rs935828988 3654 dbSNP
rs924415140 3658 dbSNP
rs1414104139 3662 dbSNP
rs115756523 3664 dbSNP
rs1427622116 3665 dbSNP
rs114942014 3672 dbSNP
rs1419133741 3679 dbSNP
rs576649263 3686 dbSNP
rs922608573 3688 dbSNP
rs897767088 3696 dbSNP
rs1410302889 3702 dbSNP
rs1158709056 3707 dbSNP
rs1343409303 3716 dbSNP
rs73236627 3719 dbSNP
rs944550664 3720 dbSNP
rs73144546 3738 dbSNP
rs757648340 3739 dbSNP
rs1475170734 3740 dbSNP
rs951592432 3741 dbSNP
rs574146597 3744 dbSNP
rs1026199209 3747 dbSNP
rs1484628890 3749 dbSNP
rs986621127 3758 dbSNP
rs1241930485 3771 dbSNP
rs187299842 3777 dbSNP
rs1318441495 3779 dbSNP
rs533847872 3781 dbSNP
rs143628051 3783 dbSNP
rs557750652 3786 dbSNP
rs1232558815 3794 dbSNP
rs868385266 3797 dbSNP
rs956678925 3805 dbSNP
rs77827628 3813 dbSNP
rs1323889895 3819 dbSNP
rs1325651699 3826 dbSNP
rs1432428665 3828 dbSNP
rs982364498 3832 dbSNP
rs569086612 3836 dbSNP
rs1342207175 3845 dbSNP
rs115701129 3849 dbSNP
rs1288982629 3855 dbSNP
rs1382973729 3860 dbSNP
rs1210966437 3869 dbSNP
rs894419521 3878 dbSNP
rs1445698999 3881 dbSNP
rs1190753410 3884 dbSNP
rs777827779 3887 dbSNP
rs1000490780 3904 dbSNP
rs1181781672 3905 dbSNP
rs1370303574 3907 dbSNP
rs1347250561 3913 dbSNP
rs1459325952 3915 dbSNP
rs142317056 3920 dbSNP
rs1027339300 3935 dbSNP
rs1322108612 3936 dbSNP
rs934130230 3940 dbSNP
rs1461295144 3947 dbSNP
rs1419173329 3948 dbSNP
rs1341760538 3949 dbSNP
rs1246153126 3952 dbSNP
rs1260726564 3954 dbSNP
rs922680381 3956 dbSNP
rs993152238 3975 dbSNP
rs897460494 3978 dbSNP
rs1040711567 3980 dbSNP
rs1008775080 3981 dbSNP
rs35602267 3992 dbSNP
rs749922202 3994 dbSNP
rs909858233 4006 dbSNP
rs984397314 4009 dbSNP
rs368994732 4011 dbSNP
rs1050290790 4012 dbSNP
rs1363202142 4013 dbSNP
rs1471579876 4015 dbSNP
rs1161051888 4017 dbSNP
rs946515037 4032 dbSNP
rs915357561 4045 dbSNP
rs1468916045 4048 dbSNP
rs1300779039 4050 dbSNP
rs1052492862 4055 dbSNP
rs951677420 4060 dbSNP
rs935339392 4061 dbSNP
rs918805285 4070 dbSNP
rs116376589 4072 dbSNP
rs1289305805 4076 dbSNP
rs1323345635 4078 dbSNP
rs1231329542 4089 dbSNP
rs752897111 4095 dbSNP
rs1258027565 4096 dbSNP
rs982780609 4108 dbSNP
rs971166924 4115 dbSNP
rs1212819365 4142 dbSNP
rs546424935 4144 dbSNP
rs766206247 4149 dbSNP
rs116126553 4159 dbSNP
rs991212018 4163 dbSNP
rs571430869 4170 dbSNP
rs1184280733 4175 dbSNP
rs1032642561 4186 dbSNP
rs1225228739 4187 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084040. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep1 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uacaUCCGGAAAUCUAGUGAa 5'
              ||||   |:||||||| 
Target 5' ----AGGCAGGUGGAUCACUu 3'
1 - 17
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084040
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep1
Location of target site ENST00000436693.2 | 3UTR | AGGCAGGUGGAUCACUUGAGGUCAGGAGUUCGAGACCAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
UCEC -0.571 0.31 -0.500 0.33 3 Click to see details
BLCA -0.288 0.41 0.500 0.33 3 Click to see details
HNSC 0.067 0.44 0.107 0.41 7 Click to see details
BRCA 0.119 0.46 -0.500 0.33 3 Click to see details
BRCA 0.119 0.46 -0.500 0.33 3 Click to see details
BRCA 0.119 0.46 -0.500 0.33 3 Click to see details
BRCA 0.119 0.46 -0.500 0.33 3 Click to see details
BRCA 0.119 0.46 -0.500 0.33 3 Click to see details
109 hsa-miR-1245a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT006574 BRCA2 BRCA2, DNA repair associated 2 1
MIRT055432 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT063879 RASSF8 Ras association domain family member 8 2 6
MIRT077025 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT095775 GRPEL2 GrpE like 2, mitochondrial 2 10
MIRT099172 MAP3K4 mitogen-activated protein kinase kinase kinase 4 2 2
MIRT175616 OCRL OCRL, inositol polyphosphate-5-phosphatase 2 2
MIRT456518 LYPLAL1 lysophospholipase like 1 2 2
MIRT464457 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT465747 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT468257 SFXN4 sideroflexin 4 2 2
MIRT469216 RICTOR RPTOR independent companion of MTOR complex 2 2 2
MIRT472045 NPAT nuclear protein, coactivator of histone transcription 2 2
MIRT481795 APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 2 2
MIRT500154 CREBBP CREB binding protein 2 2
MIRT506514 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 4
MIRT506915 KBTBD8 kelch repeat and BTB domain containing 8 2 6
MIRT513901 GRB10 growth factor receptor bound protein 10 2 6
MIRT519128 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT528121 FOXH1 forkhead box H1 2 2
MIRT528942 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT540580 CEP89 centrosomal protein 89 2 2
MIRT545858 ZNF264 zinc finger protein 264 2 4
MIRT547147 PGM3 phosphoglucomutase 3 2 2
MIRT547434 MED4 mediator complex subunit 4 2 2
MIRT554650 ROBO1 roundabout guidance receptor 1 2 2
MIRT558524 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT559762 ABHD5 abhydrolase domain containing 5 2 2
MIRT560438 GOLGA7B golgin A7 family member B 2 2
MIRT561974 LRRC59 leucine rich repeat containing 59 2 2
MIRT562442 DDIT4 DNA damage inducible transcript 4 2 2
MIRT563489 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT568265 BMP2K BMP2 inducible kinase 2 2
MIRT572522 KIAA0232 KIAA0232 2 2
MIRT612801 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT621533 ZNF507 zinc finger protein 507 2 2
MIRT625205 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT625615 ZNF84 zinc finger protein 84 2 2
MIRT629215 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629509 AS3MT arsenite methyltransferase 2 2
MIRT629769 STK25 serine/threonine kinase 25 2 2
MIRT630908 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT632508 RAB13 RAB13, member RAS oncogene family 2 2
MIRT636871 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT637106 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637332 FAM9B family with sequence similarity 9 member B 2 2
MIRT637553 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637639 ZNF431 zinc finger protein 431 2 2
MIRT637836 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT638326 RNF11 ring finger protein 11 2 2
MIRT638393 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT642450 CLUAP1 clusterin associated protein 1 2 2
MIRT642616 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT643133 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT644324 NFKBID NFKB inhibitor delta 2 2
MIRT645150 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 2
MIRT645673 ADK adenosine kinase 2 2
MIRT646091 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT646858 SLC35E4 solute carrier family 35 member E4 2 2
MIRT650153 ZNF426 zinc finger protein 426 2 2
MIRT652483 TMEM181 transmembrane protein 181 2 2
MIRT653790 SIRPA signal regulatory protein alpha 2 2
MIRT655526 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT657077 JPH2 junctophilin 2 2 2
MIRT657322 HOOK3 hook microtubule tethering protein 3 2 2
MIRT662036 FUT2 fucosyltransferase 2 2 2
MIRT662322 ADM2 adrenomedullin 2 2 2
MIRT663211 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663559 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663937 ZNF554 zinc finger protein 554 2 2
MIRT664689 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT664709 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT665291 ZFP14 ZFP14 zinc finger protein 2 2
MIRT665572 TXNL1 thioredoxin like 1 2 2
MIRT667068 PAOX polyamine oxidase 2 2
MIRT667304 MYO5A myosin VA 2 2
MIRT667442 METTL14 methyltransferase like 14 2 2
MIRT668048 GTPBP10 GTP binding protein 10 2 2
MIRT669604 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT671088 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT674361 SLC35E3 solute carrier family 35 member E3 2 2
MIRT674962 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT676394 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676819 AGMAT agmatinase 2 2
MIRT676891 ENSA endosulfine alpha 2 2
MIRT677059 ZNF34 zinc finger protein 34 2 2
MIRT678424 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678735 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT678930 XPOT exportin for tRNA 2 2
MIRT678954 MYADM myeloid associated differentiation marker 2 2
MIRT679228 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679765 TLR6 toll like receptor 6 2 2
MIRT681992 HRH4 histamine receptor H4 2 2
MIRT687405 NSUN4 NOP2/Sun RNA methyltransferase family member 4 2 2
MIRT694570 RBMXL1 RNA binding motif protein, X-linked like 1 2 2
MIRT698449 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT706406 HAS2 hyaluronan synthase 2 2 2
MIRT706582 ZNF432 zinc finger protein 432 2 2
MIRT706838 VHLL VHL like 2 2
MIRT706909 DVL3 dishevelled segment polarity protein 3 2 2
MIRT707052 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT708583 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT708988 CABP4 calcium binding protein 4 2 2
MIRT713041 ADRA2B adrenoceptor alpha 2B 2 2
MIRT713731 SUCO SUN domain containing ossification factor 2 2
MIRT714968 RAB21 RAB21, member RAS oncogene family 2 2
MIRT717485 PDE4DIP phosphodiesterase 4D interacting protein 2 2
MIRT722826 KLK2 kallikrein related peptidase 2 2 2
MIRT723305 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1245a Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (M14) (500nM)
hsa-miR-1245a Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (M14) (500nM)
hsa-miR-1245a Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (M14) (1uM)
hsa-miR-1245a Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (M14) (1uM)
hsa-miR-1245a Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-1245a Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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