pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZKSCAN3   
Synonyms ZF47, ZFP306, ZNF306, ZNF309, ZSCAN13, ZSCAN35, Zfp47, dJ874C20.1, dJ874C20.1., zfp-47
Description zinc finger with KRAB and SCAN domains 3
Transcript NM_024493   
Expression
Putative miRNA Targets on ZKSCAN3
3'UTR of ZKSCAN3
(miRNA target sites are highlighted)
>ZKSCAN3|NM_024493|3'UTR
   1 CCCATGCCATACATGCCAGAGTTGGTGCTCATTTGTCACTGATCTGAAGCCACTCCCCCTGGAGTCTCAACTATAGAAAT
  81 TGTGGGCTGGGCTTTATTTACCACTACACATTATCAGGTGTTAGAAAATGTAGACTGGGTTAGACAAATTATCTTCTAAG
 161 TTCTAGAAGGGGTTTGTAATCAAAACATATTTGATAGGAGGCTACGGGAGAGTTGTCTAGAAGAGGTAAGACCTGAAACT
 241 GTTTGTTCTCTCCCACTAGAATTAAATGGATGTTTAGACTGGCTACTTGCCCTAAACCAGCACTTGGTGATGTCTACTGG
 321 GTGGATGGTTGTGATTTGGGGGCTGCTTCTCTGACCATTCTTTTTGACTGTAATGAATCCTCCACAGTTGGTCAGATTCA
 401 TAAAGTCTTATATCCCCCTCTGTGCCTTTTCTGCAGGTGCTAATAAATGTTTATTGAATGTACCAGTGAGATTACCTTCA
 481 TAGATCTGAAAATCTGATGTTATCCAGGTTTCTGAAGAACTTCTCGCCAAGGCCATTTGTGCTTGTGTCCAATTCTCTGA
 561 CCTAGATTGTGACTCAATCTAGTGTGTTTCTTACCAAGTACATAGGCAGAGCAGGGTTACTGTGATTGAAAGAATCCATT
 641 TTTTTTTTGGAGACGTAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCCACC
 721 TCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGTGCCACCATGCCCGGCTAATT
 801 TTTTATGTTTTTAGTAGAGACGGGATTTTACCGTGTTAGCCAGGATGGTCTCGATCTCCTAACCTCATGATCCTCCTGCC
 881 TCAGCCTACCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCCGGCCAAGAATCCATATTTCTTTACCAGACTAGGA
 961 ATTCTATTCTAGTGCAAATGCCTTAAAAAGCTTATCACTAAATCATTACGAATGTGTGCCATCCGTGGAATTGCTTTTTT
1041 TTTTTTTTTTTTGTAAATATGAGGTCTCACTATGTTGCCCAGGCTGGTCTCGAAATCCTGGGCAATCCTCCTGCCTCACC
1121 CTCTCAAGTACTGGAATTACAGGCGTGAGCCACCATACCCAGCCCAAATTTCACTCTTTAATGTTTTCCTGTTGCTATTC
1201 TTTAAGGAAAAAACTTTCCTATTCAGACAGTGTGAAAATCAGTCATCAAGTCAGAATAAAATGATGAATATTCTAATGCT
1281 CAGTATCTTAGTTCTCTCGGGCCTAACCAATGCCTCCTAAAACAATAGATACTATCCTGCCCCACCCTACCACCCAACAC
1361 ACACTGTATAGTAAACTGCATCAAAACTTATTCCTGCTAAGTTCATACTTTCTCCAGCTCAATGGATTCACACCAAATTT
1441 TTTTTTTTTTTTTTAGACGGAGTCTTCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCC
1521 GCCTCCCAGGTTCCTGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTATAGGCGTCCGCCTCCACGCCGGGCTA
1601 TTTTTTTTTTTTATTTTATACTTTAAGTTCTAGGGTACATGTGCACAACGTGCAGGTTTGTTACATATGTATACATGTGC
1681 CATGTTGGTGTGCTGCACCCATTAACTCGTCATTTACATTGGGTGTATCTCCTAATGCTTTCCCTCCCCCCACCCCACAA
1761 CAGGCCCCAGTGTGTGATGTTCCCCTTCCTGTGTCCAAGTGTTCTCCTTATTCAATTCCCACCTATGAGTGAGAATATGC
1841 CGTGTTTGATTTTTTGTTCTTGGCGATAGTTTGCTGAGAATGATGAGACGAGGTTTCACTGTGTTAGCCAGGATGCTCTC
1921 GATCTCCTGACCTCGTGATCCACCTGTCTCGGCCTCCCAAAATGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCA
2001 AGTATCACTTATGGTTTCAGAACGCCATTATTAGTGTCTGACTGTCTTGGTCTTCTTATACATTGATTCCCAAATCACGT
2081 GTGGTAACAGCATCTCAATTTTTCATGATGACGGTTTGAACCATTAATTTAATTCCTCAGGCTATCTACTTTTTTGTTAA
2161 ACATACTGTGTAGACCATCTTTTTTTTTTCCCATCATGATAGTCAAAATTTTAGTCTGTGTATTCAAGTGAGAAAATTTT
2241 TAGTCAGCATTATACAAGTAGTATTTATTATGTATACATTCAGTGGAGTTGTTTCTACAAAAGTATTTCGGAATGACTAT
2321 TCTGCTGCAAACTTTTGTGTAAGCGCTTCACCTTATTCCTACAATAAGGAGAAGTGCACTAACAAAATGAACAATGCAGC
2401 AAGGGCTTCAGTCGCAGCTCAGGTCTTATCAAACACCAGAGAACCCTCAATGGGAGAAGCCTTATGAGTGTGACAACTGT
2481 GGAAAGACAGTTCCTTTTTTGTTAGTATCACTTCTACTTATTGTAGAAATATGCTTTCATTATTGCATCTACTCACATTT
2561 CTCACTCGGTTTCTGGCACCAGCAATCTCTTCCATATTTATAATATCAGTCAAAAACTCTGGAATTCAAATATAACAAGA
2641 CTTTTCTGGTCACCTTTGATAGTTAATGACTTGGGCATTGTGATATATTATCTCCTGCTGTATGTATTTTGTTTAGTAGA
2721 AATTGAATCATTATCCACAATCCTTTATAGAACTATCCAAGTCCCTGTTTTTATGCTAGTTTCCAAGGCTTGGTCCTTCA
2801 AGGTTTTCAGGGATCTAGGGGACACAAATCTAACAAATCCTAATGTATATTATTTGTATTATAGTAATAAACCATATGGT
2881 TACTTTGTTTGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugacGUCGGAACUGGAGGGUc 5'
              | |:|| |:||||||| 
Target 5' ccacCTGTCTCGGCCTCCCAa 3'
1940 - 1960 161.00 -20.50
2
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            ||||  ||  :||||||| 
Target 5' acTGCAAGCTCCGCCTCCCAg 3'
1509 - 1529 159.00 -25.80
3
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            | | ||||  :||||||: 
Target 5' tcTCCTGCCTCAGCCTCCCGa 3'
1541 - 1561 143.00 -20.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30517613 5 COSMIC
COSN20102525 21 COSMIC
COSN30187212 22 COSMIC
COSN31506870 26 COSMIC
COSN30130246 37 COSMIC
COSN30462658 45 COSMIC
COSN30109826 77 COSMIC
COSN31531284 88 COSMIC
COSN21302931 135 COSMIC
COSN6317670 206 COSMIC
COSN31543659 233 COSMIC
COSN31598287 251 COSMIC
COSN24301423 334 COSMIC
COSN26561770 423 COSMIC
COSN28813200 540 COSMIC
COSN28999059 649 COSMIC
COSN20377729 1054 COSMIC
COSN21619092 1255 COSMIC
COSN21840273 1274 COSMIC
COSN7869467 1299 COSMIC
COSN19352006 1753 COSMIC
COSN15696215 1758 COSMIC
COSN18006211 1842 COSMIC
COSN27553258 2190 COSMIC
COSN16840087 2353 COSMIC
COSN30577881 2368 COSMIC
COSN31552649 2415 COSMIC
COSN31571645 2436 COSMIC
COSN4858669 2488 COSMIC
COSN30668294 2528 COSMIC
COSN2158513 2775 COSMIC
COSN7869468 2857 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1213892077 2 dbSNP
rs1355066698 3 dbSNP
rs1171183872 9 dbSNP
rs772623317 10 dbSNP
rs1431716090 14 dbSNP
rs1488451538 15 dbSNP
rs200074203 17 dbSNP
rs551475579 17 dbSNP
rs55924797 18 dbSNP
rs796112725 18 dbSNP
rs1168267351 19 dbSNP
rs1044327000 20 dbSNP
rs1041022697 22 dbSNP
rs907129191 25 dbSNP
rs1488417114 32 dbSNP
rs747152417 40 dbSNP
rs771018060 47 dbSNP
rs779706443 50 dbSNP
rs1417212715 52 dbSNP
rs1206607116 54 dbSNP
rs1339529820 56 dbSNP
rs1273462773 60 dbSNP
rs73399697 62 dbSNP
rs192134636 73 dbSNP
rs1298861422 75 dbSNP
rs1398730145 80 dbSNP
rs758137811 86 dbSNP
rs997117861 105 dbSNP
rs1309834429 111 dbSNP
rs2240725 125 dbSNP
rs1411733126 135 dbSNP
rs765225061 138 dbSNP
rs888642371 141 dbSNP
rs752699722 146 dbSNP
rs1005707437 155 dbSNP
rs1015378478 171 dbSNP
rs1348908640 172 dbSNP
rs1235481684 177 dbSNP
rs1409337485 178 dbSNP
rs747189946 181 dbSNP
rs1481769197 191 dbSNP
rs1250496389 194 dbSNP
rs534501266 202 dbSNP
rs550753446 206 dbSNP
rs755029953 207 dbSNP
rs1034692462 209 dbSNP
rs1317363352 211 dbSNP
rs1290100343 212 dbSNP
rs529596291 215 dbSNP
rs1022109032 219 dbSNP
rs781393868 220 dbSNP
rs1287758935 221 dbSNP
rs151247127 223 dbSNP
rs1007294359 256 dbSNP
rs1301374710 277 dbSNP
rs868522374 283 dbSNP
rs1019917464 285 dbSNP
rs965627340 286 dbSNP
rs1161976796 288 dbSNP
rs1250572926 298 dbSNP
rs1411919185 299 dbSNP
rs1481884525 307 dbSNP
rs972950973 309 dbSNP
rs1025837697 310 dbSNP
rs1414273394 311 dbSNP
rs867160890 318 dbSNP
rs1423106369 320 dbSNP
rs1486057599 325 dbSNP
rs990764826 332 dbSNP
rs1269732046 344 dbSNP
rs952974185 347 dbSNP
rs915118519 354 dbSNP
rs1374779258 358 dbSNP
rs946576390 364 dbSNP
rs1293844601 366 dbSNP
rs1430453642 371 dbSNP
rs1245594418 386 dbSNP
rs977887519 395 dbSNP
rs924738759 398 dbSNP
rs1342411091 400 dbSNP
rs1310810778 402 dbSNP
rs934750162 403 dbSNP
rs140467188 408 dbSNP
rs758205888 413 dbSNP
rs1366230885 415 dbSNP
rs374149304 419 dbSNP
rs1368895938 438 dbSNP
rs1322925499 439 dbSNP
rs1416870506 445 dbSNP
rs908948741 454 dbSNP
rs1164404797 466 dbSNP
rs1303726137 467 dbSNP
rs1378898584 469 dbSNP
rs1366252582 475 dbSNP
rs748176918 481 dbSNP
rs551237485 482 dbSNP
rs901188257 487 dbSNP
rs979743075 495 dbSNP
rs932621939 497 dbSNP
rs770463614 499 dbSNP
rs888685546 506 dbSNP
rs1464319581 508 dbSNP
rs938611031 509 dbSNP
rs1005754914 526 dbSNP
rs1228435958 527 dbSNP
rs891648570 529 dbSNP
rs1263709531 530 dbSNP
rs1244200811 534 dbSNP
rs1343060252 550 dbSNP
rs1300120377 559 dbSNP
rs183821768 578 dbSNP
rs1365013406 583 dbSNP
rs760921719 595 dbSNP
rs1388976166 603 dbSNP
rs897287111 604 dbSNP
rs187099128 605 dbSNP
rs1035153228 613 dbSNP
rs959089087 614 dbSNP
rs1482797129 628 dbSNP
rs1391608662 637 dbSNP
rs1019640007 639 dbSNP
rs1253454373 639 dbSNP
rs901151611 639 dbSNP
rs990873715 640 dbSNP
rs994446339 644 dbSNP
rs1263715822 649 dbSNP
rs368418228 655 dbSNP
rs1167977390 656 dbSNP
rs1388409111 666 dbSNP
rs1436740812 671 dbSNP
rs967935394 672 dbSNP
rs977939343 675 dbSNP
rs923782646 676 dbSNP
rs1226545497 682 dbSNP
rs984694910 683 dbSNP
rs965821464 700 dbSNP
rs1275745692 735 dbSNP
rs1464828229 736 dbSNP
rs976880039 741 dbSNP
rs922658298 742 dbSNP
rs1366492598 762 dbSNP
rs1435025874 768 dbSNP
rs35191424 770 dbSNP
rs756849806 776 dbSNP
rs1050187520 778 dbSNP
rs1409870731 779 dbSNP
rs1371941470 782 dbSNP
rs910177573 786 dbSNP
rs1425436551 793 dbSNP
rs544458460 794 dbSNP
rs941597556 795 dbSNP
rs1037254618 816 dbSNP
rs979790738 822 dbSNP
rs928320134 825 dbSNP
rs959679001 832 dbSNP
rs897342770 833 dbSNP
rs1254001412 835 dbSNP
rs1003690946 836 dbSNP
rs192599503 853 dbSNP
rs374639537 854 dbSNP
rs947280697 856 dbSNP
rs7744993 862 dbSNP
rs1274772540 864 dbSNP
rs1011953705 873 dbSNP
rs911029230 888 dbSNP
rs1352880073 889 dbSNP
rs1269801706 892 dbSNP
rs1285832484 908 dbSNP
rs942781657 910 dbSNP
rs1041133971 912 dbSNP
rs1022380644 913 dbSNP
rs1465240242 914 dbSNP
rs1187851878 917 dbSNP
rs1246181704 922 dbSNP
rs1335831520 925 dbSNP
rs967652420 927 dbSNP
rs760431635 928 dbSNP
rs763649048 930 dbSNP
rs1473496050 931 dbSNP
rs999410466 940 dbSNP
rs57204212 946 dbSNP
rs1424671844 950 dbSNP
rs761202472 951 dbSNP
rs560153164 952 dbSNP
rs1238239266 953 dbSNP
rs888700253 956 dbSNP
rs115334768 965 dbSNP
rs1161658244 969 dbSNP
rs1209753577 970 dbSNP
rs976306177 987 dbSNP
rs1331784747 999 dbSNP
rs143960591 1010 dbSNP
rs116065040 1011 dbSNP
rs1379309542 1025 dbSNP
rs1319115365 1026 dbSNP
rs1397382514 1034 dbSNP
rs11309508 1035 dbSNP
rs1158389845 1035 dbSNP
rs1320937635 1035 dbSNP
rs1339515375 1035 dbSNP
rs1386336400 1035 dbSNP
rs1400189746 1035 dbSNP
rs1445289196 1035 dbSNP
rs202228158 1035 dbSNP
rs564353275 1035 dbSNP
rs755065618 1035 dbSNP
rs766849410 1035 dbSNP
rs1414698153 1048 dbSNP
rs1183684446 1049 dbSNP
rs1437940304 1051 dbSNP
rs1242795812 1052 dbSNP
rs1274952509 1052 dbSNP
rs1236654806 1053 dbSNP
rs1466567567 1053 dbSNP
rs1345611546 1054 dbSNP
rs1217122091 1055 dbSNP
rs1289906166 1056 dbSNP
rs1329591097 1057 dbSNP
rs1207936262 1060 dbSNP
rs1215784276 1061 dbSNP
rs1266137111 1062 dbSNP
rs184495862 1067 dbSNP
rs1226152210 1075 dbSNP
rs1355154227 1076 dbSNP
rs1297945438 1078 dbSNP
rs146787124 1085 dbSNP
rs1222330366 1092 dbSNP
rs1319793598 1106 dbSNP
rs1437034639 1111 dbSNP
rs1246212624 1121 dbSNP
rs1477123274 1129 dbSNP
rs750317281 1132 dbSNP
rs1351551065 1141 dbSNP
rs1166950144 1145 dbSNP
rs1403696052 1146 dbSNP
rs567832520 1151 dbSNP
rs1035388349 1155 dbSNP
rs536411849 1156 dbSNP
rs1037306880 1158 dbSNP
rs1451709548 1159 dbSNP
rs547296431 1161 dbSNP
rs758191268 1163 dbSNP
rs1057026902 1184 dbSNP
rs111704904 1193 dbSNP
rs1012417271 1201 dbSNP
rs1248991911 1208 dbSNP
rs912858082 1208 dbSNP
rs1043454550 1210 dbSNP
rs567008712 1218 dbSNP
rs1274906986 1222 dbSNP
rs1230234694 1225 dbSNP
rs1406475222 1229 dbSNP
rs1323571139 1234 dbSNP
rs1219618356 1244 dbSNP
rs1369578348 1245 dbSNP
rs978677830 1266 dbSNP
rs138920813 1280 dbSNP
rs903545850 1291 dbSNP
rs1348791107 1293 dbSNP
rs1365106213 1299 dbSNP
rs1308845285 1308 dbSNP
rs11751928 1317 dbSNP
rs149430718 1320 dbSNP
rs965924244 1326 dbSNP
rs1434171341 1335 dbSNP
rs1350775114 1344 dbSNP
rs117832532 1354 dbSNP
rs1190049331 1364 dbSNP
rs1227508442 1366 dbSNP
rs1251836571 1369 dbSNP
rs922681366 1371 dbSNP
rs997401330 1376 dbSNP
rs1029248401 1382 dbSNP
rs953207564 1383 dbSNP
rs985963325 1405 dbSNP
rs1210531944 1409 dbSNP
rs1313776508 1422 dbSNP
rs1358306359 1423 dbSNP
rs1299095949 1424 dbSNP
rs1222884213 1427 dbSNP
rs1047515744 1433 dbSNP
rs62401452 1436 dbSNP
rs1289026886 1438 dbSNP
rs1297863820 1438 dbSNP
rs531082527 1438 dbSNP
rs55844189 1438 dbSNP
rs796527130 1438 dbSNP
rs866561348 1438 dbSNP
rs869128314 1438 dbSNP
rs74948421 1439 dbSNP
rs1491447764 1440 dbSNP
rs1469680135 1441 dbSNP
rs1289141268 1442 dbSNP
rs1413383614 1443 dbSNP
rs1183651094 1444 dbSNP
rs769380676 1458 dbSNP
rs1249343614 1459 dbSNP
rs1207442910 1461 dbSNP
rs1252770193 1465 dbSNP
rs1045300557 1477 dbSNP
rs905397461 1481 dbSNP
rs1253961802 1487 dbSNP
rs1003657535 1491 dbSNP
rs1017008707 1496 dbSNP
rs1180396331 1502 dbSNP
rs1370569987 1505 dbSNP
rs1473369506 1509 dbSNP
rs566276202 1520 dbSNP
rs554835574 1521 dbSNP
rs1396764183 1522 dbSNP
rs1381623839 1543 dbSNP
rs574591099 1550 dbSNP
rs1335093593 1558 dbSNP
rs1469630506 1561 dbSNP
rs1389987686 1571 dbSNP
rs1162048984 1576 dbSNP
rs1403069170 1579 dbSNP
rs540024799 1581 dbSNP
rs533630942 1585 dbSNP
rs1169974630 1591 dbSNP
rs1164875464 1592 dbSNP
rs1370734457 1593 dbSNP
rs1415652057 1595 dbSNP
rs959784462 1598 dbSNP
rs11457679 1601 dbSNP
rs1211322143 1601 dbSNP
rs1260151216 1601 dbSNP
rs1245655582 1608 dbSNP
rs1020388864 1609 dbSNP
rs560397956 1609 dbSNP
rs1408848408 1611 dbSNP
rs548937276 1613 dbSNP
rs56361131 1613 dbSNP
rs1342034705 1614 dbSNP
rs1448554933 1619 dbSNP
rs1283502548 1620 dbSNP
rs1354212905 1621 dbSNP
rs1230650102 1626 dbSNP
rs979117238 1629 dbSNP
rs1384873130 1631 dbSNP
rs1018184710 1639 dbSNP
rs567432243 1650 dbSNP
rs962728771 1651 dbSNP
rs545048788 1655 dbSNP
rs972715907 1675 dbSNP
rs144862864 1677 dbSNP
rs1186453031 1678 dbSNP
rs530947636 1680 dbSNP
rs992388348 1681 dbSNP
rs916746336 1689 dbSNP
rs1267997294 1691 dbSNP
rs1187336007 1694 dbSNP
rs930060509 1697 dbSNP
rs1289857867 1699 dbSNP
rs1245589758 1705 dbSNP
rs982861357 1712 dbSNP
rs909895508 1720 dbSNP
rs1300187962 1723 dbSNP
rs1225733174 1726 dbSNP
rs941356473 1728 dbSNP
rs1236194355 1741 dbSNP
rs1388009631 1742 dbSNP
rs1451901189 1744 dbSNP
rs1302004193 1747 dbSNP
rs1045759904 1749 dbSNP
rs372742536 1751 dbSNP
rs544315584 1752 dbSNP
rs1428618975 1753 dbSNP
rs1474987953 1755 dbSNP
rs1378100527 1757 dbSNP
rs1165776870 1758 dbSNP
rs1403964513 1760 dbSNP
rs1414792701 1761 dbSNP
rs1333296746 1763 dbSNP
rs1338570972 1764 dbSNP
rs1437196297 1765 dbSNP
rs1221844263 1770 dbSNP
rs939564800 1772 dbSNP
rs1298326860 1778 dbSNP
rs1056565538 1783 dbSNP
rs561200131 1784 dbSNP
rs1235999302 1786 dbSNP
rs35102868 1788 dbSNP
rs375681300 1790 dbSNP
rs1257951084 1799 dbSNP
rs1344179463 1800 dbSNP
rs1346021817 1802 dbSNP
rs1409930444 1804 dbSNP
rs1200193840 1816 dbSNP
rs1326488803 1826 dbSNP
rs1276958195 1828 dbSNP
rs1409150868 1830 dbSNP
rs1402718428 1840 dbSNP
rs11752496 1842 dbSNP
rs528423152 1860 dbSNP
rs1468103365 1863 dbSNP
rs1189767107 1865 dbSNP
rs1198719773 1866 dbSNP
rs1020019662 1871 dbSNP
rs1043477398 1877 dbSNP
rs1190446070 1888 dbSNP
rs1378961838 1890 dbSNP
rs1478164406 1891 dbSNP
rs903598084 1892 dbSNP
rs1202584198 1894 dbSNP
rs755298784 1902 dbSNP
rs935030139 1904 dbSNP
rs1275661198 1910 dbSNP
rs1171711315 1918 dbSNP
rs1228438474 1921 dbSNP
rs1052046066 1922 dbSNP
rs781678390 1924 dbSNP
rs546840828 1925 dbSNP
rs1458672834 1926 dbSNP
rs1340699571 1929 dbSNP
rs1321117640 1935 dbSNP
rs1450207486 1936 dbSNP
rs7750526 1943 dbSNP
rs1432943471 1952 dbSNP
rs1303532544 1957 dbSNP
rs997853155 1970 dbSNP
rs1457826551 1980 dbSNP
rs963965357 1988 dbSNP
rs1028883274 1989 dbSNP
rs1469782619 1990 dbSNP
rs888966981 1991 dbSNP
rs1232810054 1992 dbSNP
rs1006036463 1995 dbSNP
rs1017059726 1996 dbSNP
rs1209801648 1997 dbSNP
rs1209966559 2003 dbSNP
rs1029522318 2004 dbSNP
rs1281438482 2006 dbSNP
rs951225018 2013 dbSNP
rs561787015 2024 dbSNP
rs773563043 2032 dbSNP
rs983298258 2035 dbSNP
rs909959033 2039 dbSNP
rs1285641866 2051 dbSNP
rs532849942 2054 dbSNP
rs1463959627 2063 dbSNP
rs941396939 2070 dbSNP
rs566567023 2072 dbSNP
rs1437110059 2077 dbSNP
rs1316252050 2079 dbSNP
rs1343397322 2079 dbSNP
rs962780199 2080 dbSNP
rs1400247223 2087 dbSNP
rs376034576 2096 dbSNP
rs926591532 2099 dbSNP
rs980798361 2099 dbSNP
rs972768264 2100 dbSNP
rs1443147136 2113 dbSNP
rs748313012 2115 dbSNP
rs1025658050 2118 dbSNP
rs544434948 2124 dbSNP
rs1214430740 2137 dbSNP
rs892664373 2139 dbSNP
rs1293477685 2150 dbSNP
rs945558451 2159 dbSNP
rs1319212057 2164 dbSNP
rs575718398 2171 dbSNP
rs561542874 2180 dbSNP
rs904276403 2180 dbSNP
rs1197711152 2190 dbSNP
rs1359756143 2190 dbSNP
rs1269567312 2191 dbSNP
rs1430103102 2193 dbSNP
rs1350596874 2196 dbSNP
rs1426831214 2197 dbSNP
rs1305046042 2198 dbSNP
rs1473434325 2207 dbSNP
rs1365216246 2217 dbSNP
rs1159675594 2231 dbSNP
rs1411083440 2245 dbSNP
rs1000320537 2248 dbSNP
rs1430711850 2251 dbSNP
rs1417952435 2257 dbSNP
rs1186508359 2261 dbSNP
rs1017968102 2262 dbSNP
rs1270336274 2262 dbSNP
rs1478652753 2262 dbSNP
rs960711446 2264 dbSNP
rs1451567698 2265 dbSNP
rs1206321653 2267 dbSNP
rs992837783 2270 dbSNP
rs916819068 2272 dbSNP
rs568851981 2310 dbSNP
rs1391534581 2311 dbSNP
rs1029569723 2319 dbSNP
rs1347324113 2324 dbSNP
rs951321948 2329 dbSNP
rs10549833 2333 dbSNP
rs1345092879 2338 dbSNP
rs948248429 2345 dbSNP
rs778458044 2346 dbSNP
rs925070866 2347 dbSNP
rs1170199569 2367 dbSNP
rs935087568 2367 dbSNP
rs1415511514 2374 dbSNP
rs776942890 2409 dbSNP
rs1327628484 2412 dbSNP
rs201137368 2414 dbSNP
rs1479847888 2415 dbSNP
rs1252085144 2418 dbSNP
rs190538450 2430 dbSNP
rs1479460689 2446 dbSNP
rs1488510083 2451 dbSNP
rs1232025453 2460 dbSNP
rs932979997 2461 dbSNP
rs1208767264 2463 dbSNP
rs1325529828 2467 dbSNP
rs1266280661 2468 dbSNP
rs1323004610 2469 dbSNP
rs1483846718 2470 dbSNP
rs146204939 2477 dbSNP
rs960681503 2480 dbSNP
rs1250812721 2495 dbSNP
rs568016810 2495 dbSNP
rs992404882 2500 dbSNP
rs889025533 2510 dbSNP
rs1006093258 2524 dbSNP
rs1408902291 2533 dbSNP
rs914156131 2538 dbSNP
rs1369034151 2539 dbSNP
rs1411981063 2540 dbSNP
rs945581203 2543 dbSNP
rs1457442279 2548 dbSNP
rs534000451 2558 dbSNP
rs1016101834 2568 dbSNP
rs1372587278 2569 dbSNP
rs897628183 2571 dbSNP
rs1307731804 2610 dbSNP
rs1371614796 2612 dbSNP
rs1203021758 2614 dbSNP
rs76980205 2631 dbSNP
rs1261347652 2634 dbSNP
rs1241309057 2652 dbSNP
rs746184054 2660 dbSNP
rs1306611235 2667 dbSNP
rs961014078 2670 dbSNP
rs1321679398 2671 dbSNP
rs1385510881 2674 dbSNP
rs1246907446 2675 dbSNP
rs1054372 2681 dbSNP
rs1024339474 2691 dbSNP
rs1452461061 2692 dbSNP
rs1386350556 2694 dbSNP
rs780332159 2695 dbSNP
rs1039456333 2701 dbSNP
rs545678366 2723 dbSNP
rs899526393 2727 dbSNP
rs1362825173 2733 dbSNP
rs1165121202 2739 dbSNP
rs997842120 2741 dbSNP
rs969662893 2747 dbSNP
rs139216769 2756 dbSNP
rs1449955225 2761 dbSNP
rs1263834350 2768 dbSNP
rs1206940561 2771 dbSNP
rs1484973126 2795 dbSNP
rs925465145 2801 dbSNP
rs1260352398 2810 dbSNP
rs867929177 2812 dbSNP
rs987870848 2820 dbSNP
rs923028796 2824 dbSNP
rs1313319056 2845 dbSNP
rs575257793 2846 dbSNP
rs1245727981 2854 dbSNP
rs1479521853 2857 dbSNP
rs933010875 2870 dbSNP
rs1050088271 2877 dbSNP
rs1327509252 2880 dbSNP
rs1002272697 2884 dbSNP
rs144075670 2884 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084040. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep1 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugACGUCGGAACU-GGAGGguc 5'
            | ||| | ||| || ||   
Target 5' auUACAGGCGUGAGCCACCgcg 3'
12 - 33
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084040
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep1
Location of target site ENST00000377255.3 | 3UTR | AAAAUGCUGGGAUUACAGGCGUGAGCCACCGCGCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

Error report submission