pre-miRNA Information
pre-miRNA hsa-mir-23a   
Genomic Coordinates chr19: 13836587 - 13836659
Synonyms MIRN23A, hsa-mir-23a, miRNA23A, MIR23A
Description Homo sapiens miR-23a stem-loop
Comment This miRNA was previously named miR-23 . This finding was later retracted after the discovery that the regulated gene was human homolog of ES1 (HES1), whose function is unknown.
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-23a-5p
Sequence 9| GGGGUUCCUGGGGAUGGGAUUU |30
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs748509260 12 dbSNP
rs1205403719 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol E2F2   
Synonyms E2F-2
Description E2F transcription factor 2
Transcript NM_004091   
Expression
Putative miRNA Targets on E2F2
3'UTR of E2F2
(miRNA target sites are highlighted)
>E2F2|NM_004091|3'UTR
   1 GTGGCCCTGCCTGCCCCCAGCAGCCTGCCCCCGACTCTACCTCCTCACAGACAGGCTGACAGCCCCTCTGCCTGCACAGG
  81 GACATTGGACACTAGGTGCTGCCCTCAGGGCATGGGGTCTCCTCGCCTTTCCTGCCCCAGCCGGCAGAAGCTGTGTGGGG
 161 AGATATGAATGGTACGGGTGAGGAGTGGATAAGGGGTGGTCCTCACCTTCCTAATGGAAGCTGGGCCTAGGGAGGCCCAT
 241 CCAGTCTTCTGACTTCTGACCTCTCACAAGAAGGCTGCAGGTGAGGTGGCCAAGTCCAGGGAAAGGCCCTGCTACCTCCT
 321 TTTGAGGGGTAATTAGGACCCTCGACGTACCAAGAAGCACATAATGCCTTTGTATTTATTTCAGGTTGAGTTGTTTGTTT
 401 GTCCTCCCTGAGTTTTAGCAGGGAGGTTGTTCTAGTTTTTAGTGAGACCTCTGCAGACAGGCCCATCACTGTCCATGTTC
 481 CAGGGCAGGTCTGGGTTTCCAAGGGAGGGGCCCAGGCTACATCCTTGGTTTCCCCACTGTGGTGGGGGCTGGGACTCTGA
 561 GGGGCTGTCCAGTCTGCTAGAATGCTAATTGCACTTAGGCCTCATGGTTCTAGTAAACGGCAGCTGTGGGCCCTTTTGCC
 641 TCTTCCCCTGTTCTTGGCCTCACATCTCCAGCTGAGCTGCCGGTCTTGGCTTCCTGGTCGCCTCTGTCCCAGAGATGGTC
 721 CCAGGGAGCCATCCTAGGGCAGGTAGCACTGAGGCTCCTGTGGAAACAGGAGCCACCTGCTCAGGAGACCCCTTTCCTGA
 801 GGAAGTCCTTACCTCTCCCCTTGAGATGTAAAAATGGTCCAGCAGAGACAAGCTCCCGTGGAAAACAGACAGGAGCATGG
 881 GGGCAGCTGTCATGGCTGTGGCGGGCACTTTTCCTCAGAGTTTCTGCCTTGCGCTGGTCCAGGAGCCATTTTGCACCAAG
 961 GACTTGGTAGGCAGAGGCAGCCCCACTGTAAAGAAGGGTCAGATTAAAACAAAAAACTGCCAAAAGCATCCCCTCTGCCC
1041 CCCATGTGGCACTGGCATCATTCTCTGCTTCCCTGGGAGGAATTTTTTCACCATGTTATTGAAGGGGATGGTTCATTAAG
1121 GACTCCACCCCTCAGAGCTCACTCAGACCCCAAGGACAGAGGTGACTGGGGCTTGGTGACTTGTTCACTCCTTTTTTCCC
1201 AGGTATACTGAAGGGGTGACAGAGAGAGGTCTTCATGGCAGACCAGGCCTTCACAGCTAATGGGGAGAGGAACTCATGTT
1281 ACCTCTGCAGGCCTGGGGTCCTGAGGGGGTCTTTTGGCTTCAGCCTGTTCCCCCAGAGGCTTGATCATCCCACATTGTCC
1361 CTTCAGCTCAGCTGCTCTTCTCCCCCACCCACCCTGGGATGTGGGTGCTCTGGGCTGAACCAAGGCTATGACTTCTGGAG
1441 AGAGGCTCAGGGGTTGGTCTGAGAGGCCTGCCATCCACCCCTCAGGGAGCTAGGTTTTCTCAGAGGCTCAGCTGGACAGC
1521 ACTTTTTAGAAAAGTTTGTAGCATTAAGCTGGTTTAAAATATGAAGTTGGTTTTGTTGGATGGCTCCTGAGCTGACTGAC
1601 TGATGTCTGAAGTTTGAGACGAGGGATTATTTCAGGGTGGGGCCCAATGTGATCTAATGCCCAGCTGGGGACAATTGTGC
1681 CTCATCATTTGCTCAAATTCCTGGGCCCCCAAGTTAGCCCCCTCCCAGGAGTGGTCAGCGGGTCACAGCTGCCCCCACTC
1761 TATAAGCAGGGCTAATTGTGTACCCTTTGCAGAAATGCTTTTGGTCTCCTACCCAAATACTCACAAGGGTCTTATCAGAC
1841 GCCCGTCTTAAAGTCCAGCATGCTCAGGGACCCTGTGTAGGATCTCGTTTGTGGTGAGTGGGCTGCTCTGAGGTCTCCAC
1921 TGGGCTGCCATTTAGCCATGTGCCATCTCTGAAGTCAGAGGTGTTTGACTCCCATTCCTTGGGCTCTGGAGCTTTCCCCA
2001 AGAATTACATCAGAGAAAAGGAAGAAGGGGCCTGCAGGACCCATTGGGAATGAGTTTAATACTGAAGTCTGGAATGTAAG
2081 CTCATGCCCTAGAGGCCTCTCCATATGGCTGGTCAGGGGAGCTGCCTTCAGGCTTGTGCCCCGTGTGCTCAGCAGCTGCC
2161 TCTGTCCCCCTCTACTGTCCCTTTCACACCTTGCCTGGCCAAGGGGCTAGACCTCCCAGGCTAAGCCTCAGATTCAGTGC
2241 AGGACACAAGCTCATGCCCCCGTCTTGCCAGTGACACTTGAAGCCTCCCGACTTCCACAGAGTGCTTCAGGACACATTTT
2321 GAGTGGTATTTTCTTTTCTTTTTTTCTTCTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTG
2401 CAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTG
2481 GGACTATAGACATGCACCACCACGCCCGGCTAATTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTG
2561 GTCTTGAACTCCTGACCTCAAGTGATCCACCACCTCGGCCTCCCAAAGTGTTGAGATGACAGGCACGAGCCACCAGGCCC
2641 AGCCTGAGTGGTATTTTCTTTAGGGACCAGGTAGACTTTAAAACGAGGGTAAGAGAAAAGCCAGTGTCTTTCTGAGGTAA
2721 ATAATTTCTGCCAGGAAACTTCCCAGCCCCACCAGCAGCCCCCCTAAAAAAATCACTCGTGTCCCCAGGGACTTCTAAAG
2801 CTTGGGGCTCCAGGAAATCATCCAGTAGAGTTGGAGATTCAGAGATTTCTTGAAGCCAGGGACATGCTCCTAACTCCTTT
2881 CCCATTAAAGGTGTTAGAATAGACCAGAGGGTGTCCCTTTTCCACAGTAATGGGATCGGCTGGTGTGCCTTCAGGGAGGA
2961 AGAGGGAGGTGGTCAAGCTTGAAAAACTGGCTTTAGGATGGTTCTGACTTTGTTCTCCCTCCCCAAGTGTTCTCAACCTC
3041 CATTCTGCAGTGTTCAGAGTTTTAGGGAAAGGGTTTGGGTGCCCCAGCATCCAGGTGTTGTGTGGCTTAGCGCATGTGAA
3121 GTGAAAACCTTCTGGGGTTGTTTGGAAGCAGCTTTCTGGTTCTTGTGATTGTATCCTGAGGTCCCAGAACCCTATTCTCC
3201 CACGAGGATCCTCAGTGACCATGGTGGCCACACGCCTGGCCAGCCTGCTGGCTCCTGGGTGAGCTGAAGAACCTTGCCTG
3281 TGGCACTTTTCGAGGGTGAGCTGGAACCGAGAGAACATGGTCCCCGTGCTGGGACTCATGCGGGTCATTTCCTGCCGGCC
3361 TGGTTTCGCCTGGTCGTGTCTTTATGAGCACCATGTAAGCCTCCTTGTATTGAGATAATTGGGCATTAAACATTAAACTG
3441 CAGCTCTGGGCAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuUAGG--GUAGGGGUCCUUGGGg 5'
            :|||  ||| |:||||:|||| 
Target 5' aaGTCCAGCATGCTCAGGGACCCt 3'
1851 - 1874 158.00 -28.70
2
miRNA  3' uuUAGG-GUAGGGGUCCU-UGGGg 5'
            | || | | |:||||| |||| 
Target 5' ggAGCCACCTGCTCAGGAGACCCc 3'
769 - 792 132.00 -22.80
3
miRNA  3' uuuAGGGUAGGGGUCCUUGGGg 5'
             || ::||||||||:||:: 
Target 5' cacTCGTGTCCCCAGGGACTTc 3'
2774 - 2795 131.00 -28.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30462934 7 COSMIC
COSN6449309 8 COSMIC
COSN30142948 10 COSMIC
COSN26637066 11 COSMIC
COSN30185224 46 COSMIC
COSN30543575 60 COSMIC
COSN31604586 81 COSMIC
COSN32036421 344 COSMIC
COSN20090171 346 COSMIC
COSN6449304 578 COSMIC
COSN20903533 762 COSMIC
COSN22905643 917 COSMIC
COSN7210271 1838 COSMIC
COSN7210269 1971 COSMIC
COSN8450188 2272 COSMIC
COSN6449299 2379 COSMIC
COSN24318885 2386 COSMIC
COSN24318884 2398 COSMIC
COSN21290614 2450 COSMIC
COSN27960323 2507 COSMIC
COSN24036121 2735 COSMIC
COSN6449298 2761 COSMIC
COSN20094513 2765 COSMIC
COSN23652748 2779 COSMIC
COSN17182151 2883 COSMIC
COSN26107793 2888 COSMIC
COSN26492538 2944 COSMIC
COSN29691608 3053 COSMIC
COSN15968470 3308 COSMIC
rs3820028 1886 GWAS
rs41300116 1934 GWAS
rs12026768 2761 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs760769931 1 dbSNP
rs1232343704 2 dbSNP
rs2075993 8 dbSNP
rs768121093 9 dbSNP
rs1219211529 14 dbSNP
rs1339702869 16 dbSNP
rs952857515 18 dbSNP
rs774857226 21 dbSNP
rs762535075 23 dbSNP
rs139115180 24 dbSNP
rs188675739 25 dbSNP
rs897646821 27 dbSNP
rs769225787 29 dbSNP
rs747633119 32 dbSNP
rs763389686 33 dbSNP
rs913982540 33 dbSNP
rs776609621 36 dbSNP
rs527364202 39 dbSNP
rs1190922820 44 dbSNP
rs1352089691 50 dbSNP
rs1162741285 66 dbSNP
rs1232454236 77 dbSNP
rs371373736 79 dbSNP
rs986680569 84 dbSNP
rs1003393570 90 dbSNP
rs879700126 92 dbSNP
rs905124460 98 dbSNP
rs771724886 99 dbSNP
rs1436889413 101 dbSNP
rs1213974556 108 dbSNP
rs893484001 111 dbSNP
rs946398623 111 dbSNP
rs1052177154 116 dbSNP
rs933801066 121 dbSNP
rs935087977 122 dbSNP
rs1226019903 124 dbSNP
rs747749050 125 dbSNP
rs976922290 131 dbSNP
rs921083363 133 dbSNP
rs1393126332 137 dbSNP
rs3218208 142 dbSNP
rs541491496 170 dbSNP
rs151168561 175 dbSNP
rs982410591 176 dbSNP
rs1475357758 178 dbSNP
rs1448170830 181 dbSNP
rs755335521 183 dbSNP
rs1194642459 187 dbSNP
rs74638672 193 dbSNP
rs556225548 194 dbSNP
rs1208810349 196 dbSNP
rs1026097536 198 dbSNP
rs1023992556 225 dbSNP
rs1013774962 232 dbSNP
rs1219576149 234 dbSNP
rs896663137 253 dbSNP
rs1034780280 258 dbSNP
rs375153243 261 dbSNP
rs1329082220 274 dbSNP
rs1372551526 275 dbSNP
rs1210397451 277 dbSNP
rs905071911 288 dbSNP
rs1023487025 297 dbSNP
rs1351228614 304 dbSNP
rs1011268854 305 dbSNP
rs1428449482 305 dbSNP
rs142089867 309 dbSNP
rs1002873666 312 dbSNP
rs185357616 314 dbSNP
rs1197761366 316 dbSNP
rs1419266782 317 dbSNP
rs397791080 319 dbSNP
rs1057480 320 dbSNP
rs1253404571 323 dbSNP
rs1043784140 329 dbSNP
rs1179367938 330 dbSNP
rs900931455 337 dbSNP
rs1040851809 339 dbSNP
rs28626157 342 dbSNP
rs372038151 343 dbSNP
rs749805144 344 dbSNP
rs537078594 346 dbSNP
rs756212654 347 dbSNP
rs1290366282 351 dbSNP
rs534308813 355 dbSNP
rs192875674 361 dbSNP
rs1335474713 379 dbSNP
rs1398263438 383 dbSNP
rs1400566767 385 dbSNP
rs941320897 390 dbSNP
rs1454042328 391 dbSNP
rs1413702347 401 dbSNP
rs909795870 403 dbSNP
rs973149294 403 dbSNP
rs1170959408 412 dbSNP
rs3218209 415 dbSNP
rs3218210 416 dbSNP
rs980176894 420 dbSNP
rs1479110625 428 dbSNP
rs558631138 430 dbSNP
rs916888813 430 dbSNP
rs992998249 432 dbSNP
rs745717871 436 dbSNP
rs1255285029 441 dbSNP
rs781374860 441 dbSNP
rs1330867637 448 dbSNP
rs369180953 453 dbSNP
rs1270263748 457 dbSNP
rs1248292268 464 dbSNP
rs1226746007 468 dbSNP
rs1328619242 484 dbSNP
rs1284823023 486 dbSNP
rs776564275 489 dbSNP
rs577599536 491 dbSNP
rs1023902763 510 dbSNP
rs1333994773 516 dbSNP
rs1436281481 520 dbSNP
rs1391231556 533 dbSNP
rs1010799278 539 dbSNP
rs1456354028 546 dbSNP
rs1272390334 548 dbSNP
rs1207134540 555 dbSNP
rs569229365 560 dbSNP
rs1471808640 563 dbSNP
rs1193740804 575 dbSNP
rs1466103124 576 dbSNP
rs3218211 578 dbSNP
rs1207103616 579 dbSNP
rs1278958249 588 dbSNP
rs1230094546 589 dbSNP
rs1354251332 598 dbSNP
rs140308353 604 dbSNP
rs999184310 618 dbSNP
rs1367849773 619 dbSNP
rs147131506 623 dbSNP
rs546764073 629 dbSNP
rs1433987215 635 dbSNP
rs1350108684 638 dbSNP
rs1009799743 640 dbSNP
rs1403112706 647 dbSNP
rs1348955643 650 dbSNP
rs1006676122 653 dbSNP
rs2742971 654 dbSNP
rs1430909327 664 dbSNP
rs765172192 675 dbSNP
rs1174014365 676 dbSNP
rs998679283 681 dbSNP
rs899911159 682 dbSNP
rs1475247099 683 dbSNP
rs1247513428 686 dbSNP
rs1426128383 699 dbSNP
rs143340216 700 dbSNP
rs941185027 702 dbSNP
rs1289205032 706 dbSNP
rs541900500 707 dbSNP
rs909823910 713 dbSNP
rs540197101 716 dbSNP
rs1249304188 732 dbSNP
rs1344918012 735 dbSNP
rs78356032 740 dbSNP
rs78357686 742 dbSNP
rs577180976 744 dbSNP
rs1368680359 745 dbSNP
rs1236450588 747 dbSNP
rs992505968 757 dbSNP
rs958736190 759 dbSNP
rs1330040393 764 dbSNP
rs1313375297 776 dbSNP
rs980127491 780 dbSNP
rs753785595 782 dbSNP
rs1368627539 783 dbSNP
rs1167811915 787 dbSNP
rs182944035 789 dbSNP
rs1426946436 790 dbSNP
rs1227345946 792 dbSNP
rs1327563698 818 dbSNP
rs916376043 828 dbSNP
rs1411024954 835 dbSNP
rs1355369263 836 dbSNP
rs372758190 840 dbSNP
rs1484041311 845 dbSNP
rs572984715 849 dbSNP
rs1205017680 851 dbSNP
rs766346631 857 dbSNP
rs565790728 858 dbSNP
rs1022442983 875 dbSNP
rs1288504787 876 dbSNP
rs1411130862 882 dbSNP
rs372826691 883 dbSNP
rs999467388 886 dbSNP
rs1348024907 889 dbSNP
rs760469357 891 dbSNP
rs956904109 893 dbSNP
rs75142162 899 dbSNP
rs1019305714 902 dbSNP
rs1173680221 903 dbSNP
rs1006622046 904 dbSNP
rs907142755 913 dbSNP
rs889539283 916 dbSNP
rs1161090485 921 dbSNP
rs1030114181 928 dbSNP
rs189936519 932 dbSNP
rs1249665860 934 dbSNP
rs998189321 936 dbSNP
rs1179989512 937 dbSNP
rs3795305 939 dbSNP
rs899943797 943 dbSNP
rs1461098812 951 dbSNP
rs1268383341 953 dbSNP
rs1039769418 961 dbSNP
rs1229797311 981 dbSNP
rs1326494611 981 dbSNP
rs897343061 983 dbSNP
rs1037230688 999 dbSNP
rs1381248904 1000 dbSNP
rs1300943413 1013 dbSNP
rs1447039379 1017 dbSNP
rs879835376 1017 dbSNP
rs569165241 1030 dbSNP
rs938947662 1034 dbSNP
rs1458986981 1041 dbSNP
rs556901051 1043 dbSNP
rs1237514376 1044 dbSNP
rs907188221 1044 dbSNP
rs1044376510 1045 dbSNP
rs948771018 1054 dbSNP
rs1416595968 1058 dbSNP
rs1207758168 1059 dbSNP
rs1461162787 1065 dbSNP
rs772729655 1069 dbSNP
rs1210264532 1072 dbSNP
rs1463259908 1089 dbSNP
rs888291121 1094 dbSNP
rs771530640 1099 dbSNP
rs936485154 1101 dbSNP
rs929936295 1110 dbSNP
rs1321426538 1121 dbSNP
rs538970603 1123 dbSNP
rs376101516 1124 dbSNP
rs567646932 1124 dbSNP
rs917167745 1128 dbSNP
rs1227637251 1129 dbSNP
rs571638653 1131 dbSNP
rs1057232265 1136 dbSNP
rs1437615931 1150 dbSNP
rs1473851961 1153 dbSNP
rs1386717579 1165 dbSNP
rs761493599 1167 dbSNP
rs965308543 1168 dbSNP
rs1351640464 1169 dbSNP
rs1019255250 1176 dbSNP
rs985134403 1184 dbSNP
rs953774633 1186 dbSNP
rs773965953 1190 dbSNP
rs1027129906 1194 dbSNP
rs1260626764 1209 dbSNP
rs1191368314 1213 dbSNP
rs995294328 1216 dbSNP
rs926928318 1224 dbSNP
rs182110686 1255 dbSNP
rs1457586712 1261 dbSNP
rs1225903007 1262 dbSNP
rs1015732346 1267 dbSNP
rs1003039771 1272 dbSNP
rs1162635944 1273 dbSNP
rs1425453746 1275 dbSNP
rs1291847042 1281 dbSNP
rs1424661507 1285 dbSNP
rs947086985 1290 dbSNP
rs1170968945 1305 dbSNP
rs1036272797 1309 dbSNP
rs774625770 1313 dbSNP
rs1199183271 1319 dbSNP
rs915416398 1331 dbSNP
rs1447354055 1333 dbSNP
rs1054935867 1334 dbSNP
rs1249507925 1341 dbSNP
rs934775471 1347 dbSNP
rs988304068 1349 dbSNP
rs749656565 1355 dbSNP
rs1253900179 1356 dbSNP
rs528720755 1358 dbSNP
rs12406323 1371 dbSNP
rs1029900646 1375 dbSNP
rs1224496552 1377 dbSNP
rs943905189 1384 dbSNP
rs567844835 1386 dbSNP
rs780603961 1390 dbSNP
rs953827828 1392 dbSNP
rs1404425824 1393 dbSNP
rs1310424312 1394 dbSNP
rs1390140223 1397 dbSNP
rs1396293965 1409 dbSNP
rs1173508887 1432 dbSNP
rs1467318276 1434 dbSNP
rs1297047781 1436 dbSNP
rs780214248 1442 dbSNP
rs1226286430 1443 dbSNP
rs1026662955 1447 dbSNP
rs1472645217 1451 dbSNP
rs1298639917 1452 dbSNP
rs974204423 1457 dbSNP
rs1179973677 1461 dbSNP
rs1437139544 1469 dbSNP
rs547984125 1476 dbSNP
rs529755873 1481 dbSNP
rs755045281 1502 dbSNP
rs1261523715 1506 dbSNP
rs1005598825 1508 dbSNP
rs1223096185 1510 dbSNP
rs1291548782 1520 dbSNP
rs1290269373 1521 dbSNP
rs1237604754 1522 dbSNP
rs1459432819 1527 dbSNP
rs562487936 1530 dbSNP
rs1015679925 1538 dbSNP
rs1335362097 1561 dbSNP
rs1025467801 1564 dbSNP
rs1002989329 1570 dbSNP
rs1350392132 1574 dbSNP
rs746340282 1579 dbSNP
rs1167811783 1581 dbSNP
rs907420570 1587 dbSNP
rs993950001 1589 dbSNP
rs1156298251 1590 dbSNP
rs1469123358 1593 dbSNP
rs375608771 1594 dbSNP
rs1369002294 1595 dbSNP
rs368621442 1601 dbSNP
rs1057068909 1605 dbSNP
rs1203333558 1616 dbSNP
rs190950793 1620 dbSNP
rs757390107 1621 dbSNP
rs565216054 1634 dbSNP
rs1349968123 1675 dbSNP
rs540518260 1686 dbSNP
rs947160616 1688 dbSNP
rs999307629 1689 dbSNP
rs1314766258 1694 dbSNP
rs903278287 1696 dbSNP
rs1203571826 1700 dbSNP
rs1390392179 1707 dbSNP
rs1315719540 1709 dbSNP
rs1399639643 1733 dbSNP
rs2811970 1734 dbSNP
rs988335034 1737 dbSNP
rs1232870876 1738 dbSNP
rs1422648542 1739 dbSNP
rs935492619 1740 dbSNP
rs1188969397 1742 dbSNP
rs1451023901 1752 dbSNP
rs1329549356 1766 dbSNP
rs561095508 1772 dbSNP
rs1299006924 1781 dbSNP
rs144357132 1793 dbSNP
rs1345843731 1797 dbSNP
rs1290642330 1806 dbSNP
rs922738372 1807 dbSNP
rs187128206 1812 dbSNP
rs977044234 1814 dbSNP
rs1229621179 1818 dbSNP
rs1367732941 1819 dbSNP
rs1050077338 1826 dbSNP
rs557015282 1840 dbSNP
rs372497327 1841 dbSNP
rs961368435 1844 dbSNP
rs1375578603 1845 dbSNP
rs751889816 1850 dbSNP
rs908296386 1855 dbSNP
rs1417073283 1861 dbSNP
rs981181880 1869 dbSNP
rs1475194767 1870 dbSNP
rs1247424256 1875 dbSNP
rs374786443 1876 dbSNP
rs1251499640 1880 dbSNP
rs1268827728 1881 dbSNP
rs3820028 1886 dbSNP
rs1484310342 1887 dbSNP
rs149612946 1890 dbSNP
rs1213689260 1895 dbSNP
rs1252703818 1896 dbSNP
rs1345282650 1900 dbSNP
rs1276188469 1901 dbSNP
rs1199937595 1906 dbSNP
rs1342877868 1907 dbSNP
rs952828105 1911 dbSNP
rs41300116 1934 dbSNP
rs1411549225 1936 dbSNP
rs1324034806 1947 dbSNP
rs957648654 1949 dbSNP
rs994635866 1953 dbSNP
rs1409675068 1958 dbSNP
rs1426141158 1971 dbSNP
rs1178793924 1977 dbSNP
rs998861898 1985 dbSNP
rs1428649665 1990 dbSNP
rs1183599991 1998 dbSNP
rs1481901000 2006 dbSNP
rs1226565076 2018 dbSNP
rs535279957 2021 dbSNP
rs1204278196 2024 dbSNP
rs1443299727 2026 dbSNP
rs1352252909 2028 dbSNP
rs34480224 2031 dbSNP
rs1329386443 2034 dbSNP
rs567775401 2035 dbSNP
rs1394964317 2052 dbSNP
rs1040467364 2054 dbSNP
rs895666535 2057 dbSNP
rs1035900753 2058 dbSNP
rs1288404164 2085 dbSNP
rs1001463542 2093 dbSNP
rs138245489 2094 dbSNP
rs905773971 2095 dbSNP
rs1399376079 2099 dbSNP
rs1371088382 2102 dbSNP
rs1448512539 2106 dbSNP
rs1008995839 2108 dbSNP
rs887453855 2113 dbSNP
rs1048682538 2120 dbSNP
rs150431052 2124 dbSNP
rs1042776562 2130 dbSNP
rs1011231838 2133 dbSNP
rs1411755006 2139 dbSNP
rs41307773 2143 dbSNP
rs1473895274 2149 dbSNP
rs1052870919 2155 dbSNP
rs549521859 2167 dbSNP
rs1413348036 2170 dbSNP
rs1177082509 2174 dbSNP
rs1473345748 2175 dbSNP
rs1245318841 2176 dbSNP
rs1201437216 2177 dbSNP
rs1460588696 2189 dbSNP
rs1049582513 2196 dbSNP
rs933036891 2202 dbSNP
rs1314552903 2206 dbSNP
rs922801913 2213 dbSNP
rs537223706 2225 dbSNP
rs943004598 2226 dbSNP
rs1228786933 2229 dbSNP
rs1381138996 2232 dbSNP
rs1038731690 2237 dbSNP
rs182083328 2242 dbSNP
rs1450817489 2244 dbSNP
rs1382318627 2248 dbSNP
rs550683343 2252 dbSNP
rs984110172 2256 dbSNP
rs1455435300 2257 dbSNP
rs952733400 2261 dbSNP
rs753679315 2262 dbSNP
rs918559463 2273 dbSNP
rs981129501 2275 dbSNP
rs971139800 2277 dbSNP
rs1182127351 2288 dbSNP
rs1444320195 2289 dbSNP
rs766037257 2294 dbSNP
rs1187866247 2300 dbSNP
rs916041799 2303 dbSNP
rs991681236 2311 dbSNP
rs972852097 2315 dbSNP
rs113902346 2316 dbSNP
rs1280092568 2319 dbSNP
rs999539978 2321 dbSNP
rs1244996704 2323 dbSNP
rs1338233032 2333 dbSNP
rs1298643300 2337 dbSNP
rs1314222145 2338 dbSNP
rs1035569990 2343 dbSNP
rs1360013505 2345 dbSNP
rs1452992145 2346 dbSNP
rs967340425 2349 dbSNP
rs1368005557 2350 dbSNP
rs1318040600 2351 dbSNP
rs1018973300 2352 dbSNP
rs1424446435 2352 dbSNP
rs1459168804 2353 dbSNP
rs1008944988 2357 dbSNP
rs1163218443 2363 dbSNP
rs1472075993 2364 dbSNP
rs1260515167 2365 dbSNP
rs1266717077 2365 dbSNP
rs758109798 2365 dbSNP
rs1370319959 2374 dbSNP
rs1184285091 2377 dbSNP
rs1342655475 2378 dbSNP
rs12027599 2379 dbSNP
rs546587320 2381 dbSNP
rs1305977328 2383 dbSNP
rs12076693 2386 dbSNP
rs1347419132 2391 dbSNP
rs1301880982 2393 dbSNP
rs921667412 2397 dbSNP
rs12076692 2398 dbSNP
rs1300262861 2401 dbSNP
rs996688608 2404 dbSNP
rs969990253 2415 dbSNP
rs1021532234 2416 dbSNP
rs1176277500 2419 dbSNP
rs1481152566 2422 dbSNP
rs898346384 2427 dbSNP
rs542836431 2429 dbSNP
rs111903743 2440 dbSNP
rs891480917 2442 dbSNP
rs1354153394 2449 dbSNP
rs1266766196 2450 dbSNP
rs1480153309 2459 dbSNP
rs1250990307 2471 dbSNP
rs374472304 2473 dbSNP
rs1325815999 2474 dbSNP
rs1281441786 2476 dbSNP
rs1223515070 2482 dbSNP
rs1363753850 2484 dbSNP
rs1336876974 2489 dbSNP
rs1309718347 2490 dbSNP
rs545099357 2495 dbSNP
rs1396180861 2496 dbSNP
rs886752899 2500 dbSNP
rs997277366 2501 dbSNP
rs901586161 2503 dbSNP
rs1041246954 2504 dbSNP
rs1365475484 2507 dbSNP
rs191572509 2508 dbSNP
rs1184501850 2519 dbSNP
rs1462822537 2521 dbSNP
rs1261424774 2527 dbSNP
rs1203130397 2528 dbSNP
rs553294221 2529 dbSNP
rs1048640349 2530 dbSNP
rs1237484283 2534 dbSNP
rs1335591160 2535 dbSNP
rs1272300626 2544 dbSNP
rs535025429 2544 dbSNP
rs931533877 2547 dbSNP
rs915657712 2554 dbSNP
rs1323279488 2557 dbSNP
rs1380125834 2565 dbSNP
rs918592315 2574 dbSNP
rs186730245 2577 dbSNP
rs1156783893 2580 dbSNP
rs1393526354 2584 dbSNP
rs960187080 2587 dbSNP
rs1185207244 2588 dbSNP
rs1164712580 2593 dbSNP
rs761295558 2594 dbSNP
rs1241558769 2609 dbSNP
rs926125607 2614 dbSNP
rs977644554 2615 dbSNP
rs928696419 2626 dbSNP
rs1203949854 2627 dbSNP
rs979981238 2638 dbSNP
rs969894948 2639 dbSNP
rs1350582391 2640 dbSNP
rs1021437401 2644 dbSNP
rs1011507420 2646 dbSNP
rs1248639291 2662 dbSNP
rs1357676803 2667 dbSNP
rs1388362395 2671 dbSNP
rs555767904 2683 dbSNP
rs537689912 2684 dbSNP
rs1031373908 2685 dbSNP
rs1475852140 2688 dbSNP
rs953397461 2691 dbSNP
rs570257858 2700 dbSNP
rs997582313 2705 dbSNP
rs1422550291 2718 dbSNP
rs1384350634 2747 dbSNP
rs901618433 2750 dbSNP
rs1475854543 2754 dbSNP
rs1449587278 2755 dbSNP
rs1017791494 2756 dbSNP
rs995360257 2757 dbSNP
rs12026768 2761 dbSNP
rs1270260498 2763 dbSNP
rs375478203 2764 dbSNP
rs372115470 2765 dbSNP
rs1225316763 2766 dbSNP
rs34779858 2773 dbSNP
rs536532385 2773 dbSNP
rs1267983912 2776 dbSNP
rs1226083706 2778 dbSNP
rs538697458 2779 dbSNP
rs571278468 2781 dbSNP
rs1304918883 2786 dbSNP
rs1230218657 2795 dbSNP
rs546546916 2807 dbSNP
rs1339640523 2808 dbSNP
rs1364791715 2814 dbSNP
rs1274697761 2817 dbSNP
rs1329298068 2821 dbSNP
rs1004048268 2825 dbSNP
rs1421936497 2838 dbSNP
rs1166324123 2849 dbSNP
rs889959684 2865 dbSNP
rs1048507973 2867 dbSNP
rs1430040557 2891 dbSNP
rs1333144457 2892 dbSNP
rs528055480 2897 dbSNP
rs1304316144 2903 dbSNP
rs897393960 2913 dbSNP
rs887035866 2916 dbSNP
rs1439868820 2921 dbSNP
rs1037066029 2931 dbSNP
rs1170552614 2937 dbSNP
rs181308935 2938 dbSNP
rs894159100 2942 dbSNP
rs977705704 2944 dbSNP
rs1280010923 2945 dbSNP
rs1055518143 2950 dbSNP
rs1352506172 2953 dbSNP
rs1327153479 2960 dbSNP
rs1465279541 2966 dbSNP
rs967998061 2970 dbSNP
rs1476931621 2971 dbSNP
rs1178684724 2977 dbSNP
rs1468243741 2990 dbSNP
rs1270727094 2991 dbSNP
rs1425107750 2993 dbSNP
rs1178237958 2998 dbSNP
rs1471382583 3007 dbSNP
rs935766545 3008 dbSNP
rs188492900 3011 dbSNP
rs1249055751 3014 dbSNP
rs1461483482 3017 dbSNP
rs1205997495 3024 dbSNP
rs928628034 3026 dbSNP
rs1277506528 3027 dbSNP
rs980605577 3037 dbSNP
rs1322155506 3042 dbSNP
rs1284910691 3048 dbSNP
rs1225366641 3049 dbSNP
rs1370973859 3057 dbSNP
rs1278726121 3063 dbSNP
rs1446409517 3081 dbSNP
rs948749197 3093 dbSNP
rs768356590 3094 dbSNP
rs369405138 3105 dbSNP
rs1358615500 3111 dbSNP
rs570456668 3112 dbSNP
rs1284302153 3114 dbSNP
rs1406319461 3121 dbSNP
rs1158427782 3127 dbSNP
rs1445560780 3138 dbSNP
rs547368287 3145 dbSNP
rs1181330349 3149 dbSNP
rs1482667265 3159 dbSNP
rs530664736 3162 dbSNP
rs1031989671 3172 dbSNP
rs1242171239 3185 dbSNP
rs563099371 3188 dbSNP
rs1217938057 3194 dbSNP
rs976002811 3197 dbSNP
rs527388988 3199 dbSNP
rs1285148037 3200 dbSNP
rs183882668 3202 dbSNP
rs1349173214 3203 dbSNP
rs545109855 3208 dbSNP
rs1317477850 3220 dbSNP
rs762465896 3222 dbSNP
rs533221716 3226 dbSNP
rs10917394 3233 dbSNP
rs1007268858 3234 dbSNP
rs887527938 3236 dbSNP
rs1027145099 3255 dbSNP
rs1425726738 3257 dbSNP
rs995621225 3259 dbSNP
rs1161338005 3260 dbSNP
rs963798274 3271 dbSNP
rs1176864943 3274 dbSNP
rs1419696818 3280 dbSNP
rs559511315 3283 dbSNP
rs1409664983 3291 dbSNP
rs1037705929 3292 dbSNP
rs1178832681 3296 dbSNP
rs938915302 3302 dbSNP
rs1236356526 3304 dbSNP
rs541447877 3308 dbSNP
rs1462368724 3309 dbSNP
rs1216427434 3311 dbSNP
rs1359911204 3318 dbSNP
rs1024159853 3322 dbSNP
rs775958442 3325 dbSNP
rs948821255 3326 dbSNP
rs573940252 3336 dbSNP
rs375807892 3339 dbSNP
rs1021646504 3341 dbSNP
rs1172034793 3342 dbSNP
rs556069232 3344 dbSNP
rs1441597897 3346 dbSNP
rs1334017005 3352 dbSNP
rs1426258157 3357 dbSNP
rs757770251 3357 dbSNP
rs999912694 3365 dbSNP
rs1266599637 3368 dbSNP
rs924441690 3372 dbSNP
rs1209033145 3375 dbSNP
rs146514413 3376 dbSNP
rs1206856593 3394 dbSNP
rs1316198882 3403 dbSNP
rs965950693 3416 dbSNP
rs1017729635 3419 dbSNP
rs1041526682 3421 dbSNP
rs576719252 3423 dbSNP
rs951828988 3431 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084040. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep1 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuuaggguaggggucCUUGGGg 5'
                         |||||| 
Target 5' gcaggagaaucgcuuGAACCCa 3'
14 - 35
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084040
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep1
Location of target site ENST00000361729.2 | 3UTR | UGAAGAGGCUGAGGCAGGAGAAUCGCUUGAACCCAGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE15076 Monocyte-derived dendritic cells 0.969 8.4e-6 0.667 2.5e-2 9 Click to see details
GSE28260 Renal cortex and medulla -0.419 7.7e-2 -0.599 1.5e-2 13 Click to see details
GSE26953 Aortic valvular endothelial cells -0.276 9.6e-2 -0.318 6.5e-2 24 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.275 1.2e-1 -0.417 3.4e-2 20 Click to see details
GSE32688 Pancreatic cancer 0.185 1.6e-1 0.170 1.8e-1 32 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.143 2.5e-1 -0.116 2.9e-1 25 Click to see details
GSE19783 ER+ ER+ breast cancer 0.161 2.5e-1 0.173 2.3e-1 20 Click to see details
GSE28544 Breast cancer 0.131 2.7e-1 0.051 4.1e-1 24 Click to see details
GSE38226 Liver fibrosis -0.127 2.9e-1 -0.119 3.0e-1 21 Click to see details
GSE19783 ER- ER- breast cancer -0.06 3.0e-1 -0.051 3.3e-1 79 Click to see details
GSE19350 CNS germ cell tumors 0.163 3.1e-1 0.023 4.7e-1 12 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.089 3.4e-1 0.253 1.1e-1 25 Click to see details
GSE17498 Multiple myeloma -0.058 3.6e-1 -0.190 1.2e-1 40 Click to see details
GSE19536 Breast cancer -0.035 3.6e-1 -0.052 3.0e-1 100 Click to see details
GSE21687 Ependynoma primary tumors -0.044 3.6e-1 0.015 4.5e-1 64 Click to see details
GSE21032 Prostate cancer 0.01 4.6e-1 -0.006 4.8e-1 83 Click to see details
GSE42095 Differentiated embryonic stem cells 0.008 4.9e-1 -0.172 2.2e-1 23 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
PRAD 0.616 0 0.258 0.14 19 Click to see details
HNSC 0.372 0.01 0.432 0 40 Click to see details
STAD 0.411 0.01 0.426 0.01 28 Click to see details
COAD 0.73 0.02 0.667 0.04 8 Click to see details
BRCA 0.179 0.06 0.130 0.13 78 Click to see details
KIRC 0.193 0.07 0.191 0.07 62 Click to see details
CESC 0.977 0.07 1.000 0.5 3 Click to see details
KICH 0.265 0.13 0.304 0.1 20 Click to see details
ESCA 0.33 0.16 0.264 0.22 11 Click to see details
BLCA 0.145 0.3 0.118 0.33 16 Click to see details
LIHC -0.078 0.32 -0.065 0.35 38 Click to see details
PCPG -0.532 0.32 -0.500 0.33 3 Click to see details
KIRP -0.085 0.32 -0.114 0.27 32 Click to see details
LUAD -0.173 0.33 -0.417 0.13 9 Click to see details
UCEC -0.09 0.36 -0.089 0.36 19 Click to see details
THCA -0.043 0.37 -0.096 0.23 59 Click to see details
LUSC -0.045 0.39 -0.101 0.27 38 Click to see details
PAAD -0.128 0.44 -0.400 0.3 4 Click to see details
CHOL -0.049 0.45 0.119 0.39 8 Click to see details
CHOL -0.049 0.45 0.119 0.39 8 Click to see details
CHOL -0.049 0.45 0.119 0.39 8 Click to see details
131 hsa-miR-23a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT038958 ATF1 activating transcription factor 1 1 1
MIRT057661 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT395438 NFKBID NFKB inhibitor delta 2 2
MIRT463884 WNT7B Wnt family member 7B 2 4
MIRT475804 HDGF heparin binding growth factor 2 2
MIRT478528 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT479278 CHD4 chromodomain helicase DNA binding protein 4 2 6
MIRT492564 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT500353 ZNF385A zinc finger protein 385A 2 2
MIRT509788 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511566 HIST3H2BB histone cluster 3 H2B family member b 2 4
MIRT525450 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539558 CNKSR3 CNKSR family member 3 2 4
MIRT540034 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540225 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540242 RGS17 regulator of G protein signaling 17 2 2
MIRT540871 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT559065 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT560685 HIST1H1T histone cluster 1 H1 family member t 2 2
MIRT565593 SLC35G1 solute carrier family 35 member G1 2 2
MIRT565642 SKI SKI proto-oncogene 2 2
MIRT576747 Tmem127 transmembrane protein 127 2 2
MIRT607712 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT615682 NAV2 neuron navigator 2 2 2
MIRT617337 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617378 FAM227A family with sequence similarity 227 member A 2 2
MIRT620855 SERPING1 serpin family G member 1 2 2
MIRT625112 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625124 NUP93 nucleoporin 93 2 2
MIRT625898 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626016 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626481 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT626573 MED7 mediator complex subunit 7 2 2
MIRT626814 PRR11 proline rich 11 2 2
MIRT628136 HM13 histocompatibility minor 13 2 2
MIRT630771 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT633133 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT636950 APTX aprataxin 2 2
MIRT637802 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT638622 GSR glutathione-disulfide reductase 2 4
MIRT642196 SMAGP small cell adhesion glycoprotein 2 2
MIRT645121 HES2 hes family bHLH transcription factor 2 2 2
MIRT645344 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT646564 ALDH5A1 aldehyde dehydrogenase 5 family member A1 2 2
MIRT649243 TRIM65 tripartite motif containing 65 2 2
MIRT651810 USP49 ubiquitin specific peptidase 49 2 2
MIRT652137 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652668 TIMELESS timeless circadian clock 2 2
MIRT655894 NEK9 NIMA related kinase 9 2 2
MIRT656564 LYRM7 LYR motif containing 7 2 2
MIRT657194 IKZF3 IKAROS family zinc finger 3 2 2
MIRT657907 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT660207 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660619 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT660826 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT660986 ABHD2 abhydrolase domain containing 2 2 2
MIRT662232 PGBD4 piggyBac transposable element derived 4 2 2
MIRT663691 ZNF347 zinc finger protein 347 2 2
MIRT665577 TUBD1 tubulin delta 1 2 2
MIRT666149 SP2 Sp2 transcription factor 2 2
MIRT666310 SLC22A3 solute carrier family 22 member 3 2 2
MIRT666457 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT667716 KIAA1468 KIAA1468 2 2
MIRT668329 FKBP5 FK506 binding protein 5 2 2
MIRT668370 FBXO47 F-box protein 47 2 2
MIRT669304 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669538 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT671681 ADK adenosine kinase 2 2
MIRT672177 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT673604 HPSE heparanase 2 2
MIRT673749 ZNF333 zinc finger protein 333 2 2
MIRT674807 FAM229B family with sequence similarity 229 member B 2 2
MIRT675286 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675391 SVOP SV2 related protein 2 2
MIRT675788 MED28 mediator complex subunit 28 2 2
MIRT676151 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676499 GJD3 gap junction protein delta 3 2 2
MIRT676621 CSNK1E casein kinase 1 epsilon 2 2
MIRT676644 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676711 METTL14 methyltransferase like 14 2 2
MIRT676809 SHROOM4 shroom family member 4 2 2
MIRT677036 FOXO3 forkhead box O3 2 2
MIRT677062 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT677086 SMIM15 small integral membrane protein 15 2 2
MIRT677193 MURC caveolae associated protein 4 2 2
MIRT677273 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677345 POC1A POC1 centriolar protein A 2 2
MIRT677504 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677526 OCIAD2 OCIA domain containing 2 2 2
MIRT677661 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT677727 SSR1 signal sequence receptor subunit 1 2 2
MIRT677803 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT678144 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678376 VTA1 vesicle trafficking 1 2 2
MIRT678708 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT678868 FAM118A family with sequence similarity 118 member A 2 2
MIRT679039 LACTB lactamase beta 2 2
MIRT679081 PURB purine rich element binding protein B 2 2
MIRT679137 SYK spleen associated tyrosine kinase 2 2
MIRT679299 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679741 CABP4 calcium binding protein 4 2 2
MIRT679946 AS3MT arsenite methyltransferase 2 2
MIRT679976 E2F2 E2F transcription factor 2 2 2
MIRT683628 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT683901 PSMB9 proteasome subunit beta 9 2 2
MIRT684172 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684231 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT685403 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686253 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT687513 NCKAP1 NCK associated protein 1 2 2
MIRT688243 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688315 FAM151B family with sequence similarity 151 member B 2 2
MIRT688733 CNDP1 carnosine dipeptidase 1 2 2
MIRT689031 ANGPTL3 angiopoietin like 3 2 2
MIRT698207 TMEM248 transmembrane protein 248 2 2
MIRT699859 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT709954 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT711541 MSH3 mutS homolog 3 2 2
MIRT712077 WDR37 WD repeat domain 37 2 2
MIRT715312 POLR2E RNA polymerase II subunit E 2 2
MIRT715725 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT715748 HSD11B1L hydroxysteroid 11-beta dehydrogenase 1 like 2 2
MIRT717604 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717875 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT718042 NIPAL2 NIPA like domain containing 2 2 2
MIRT718829 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT724037 CAMK2N2 calcium/calmodulin dependent protein kinase II inhibitor 2 2 2
MIRT733305 TNF tumor necrosis factor 1 0
MIRT734941 HSPA1B heat shock protein family A (Hsp70) member 1B 3 0
MIRT737343 IGF2 insulin like growth factor 2 3 0
MIRT737546 PTEN phosphatase and tensin homolog 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-23a 1'-Acetoxychavicol acetate (ACA) NULL 119104 Microarray HN4 cell line 24317043 2014 down-regulated
miR-23a 5-Fluorouracil approved 3385 Quantitative real-time PCR colon cancer cells 17702597 2007 up-regulated
miR-23a Curcumin NULL 969516 Microarray BxPC-3 human pancreatic carcinoma cell line 18347134 2008 up-regulated
miR-23a Enoxacin approved 3229 Quantitative real-time PCR HEK293 cells 18641635 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR glandular epithelial cells 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR glandular epithelial cells 19088369 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Microarray MCF-7 breast cancer cells 19528081 2009 up-regulated
miR-23a Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 down-regulated
miR-23a Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-23a Bio-Oss NULL NULL Microarray osteoblast-like cell line (MG63) 20224834 2010 up-regulated
miR-23a Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-23a 5-Fluorouracil approved 3385 Microarray MCF-7 breast cancer cells 21506117 2011 up-regulated
miR-23a Trastuzumab approved NULL Microarray BT474 cells 22384020 2012 up-regulated
miR-23a Trastuzumab approved NULL Microarray SKBR3 cells. 22384020 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Quantitative real-time PCR thymus 23024791 2012 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse liver 19270793 2009 up-regulated
miR-23a Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 up-regualted
miR-23a Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 down-regulated
miR-23a Comfrey NULL 6440495 Microarray rat liver 21370286 2011 up-regulated
miR-23a Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-23a Ethanol NULL 702 Quantitative real-time PCR zebrafish embryos 22298809 2012 down-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a Morphine approved 5288826 Microarray human monocyte-derived macrophages (h-mdms) infection with HIV-1 20564181 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive Low Breast Cancer cell line (MDA-MB-231)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (BGC823)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC-7901)
hsa-mir-23a Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-mir-23a Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-23a Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (OE19)
hsa-mir-23a Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-23a Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (SGC-7901)
hsa-miR-23a-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Palbociclib 5330286 NSC758247 approved resistant High Breast Cancer cell line (T47D)
hsa-miR-23a-5p Arsenic trioxide 261004 NSC759274 approved sensitive Low Acute Myeloid Leukemia cell line (U937, Kasumi-1, THP-1, Jurkat E6.1, SUP B15)
hsa-miR-23a-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-23a-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (total RNA)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-23a-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-23a-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-23a-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-23a-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-23a-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-23a-5p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (MDA-231)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-23a-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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