miRTarBase - #MIRT680743


—
pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CA5B   
Synonyms CA-VB
Description carbonic anhydrase 5B
Transcript NM_007220   
Expression
Putative miRNA Targets on CA5B
3'UTR of CA5B
(miRNA target sites are highlighted)		 
>CA5B|NM_007220|3'UTR
   1 AACATTCATATCTAGGCAGTATTTTGCTTTTGCTTTAATATATACTAGCTTACTATAAATTGTTAACTAGACTATTCTAA
  81 GTGCCTGCATTTGATAATATTTACAGATGTGCATTTCTTAGCATGAGAGTGCTTCATCAGTCTTTGAGGAAGGCTATTCG
 161 GTACCAGCAAGAGACACAAGTTTCTCTTACAGATACCTGTTGGTAATTGTAATGCCTTTTTTTTTTCTTTAAGAGACTAG
 241 GTCTTGCTCTGCTGCCCAGGCTAGAGTGCAGTGGCCAAATGATAGCTCACTGCAGCCTTGAACTCCTAGGCTCAAGCAGT
 321 CCTCCTGCCTTAGCCTCTAGAGTAGCTGGGGCTACAGGTGCTGGCCGCCTGGCCCAGCTTGTAATATCTTTTTATGTCTG
 401 ACATTTTTGAGCTATCTTTTTATGTTTATCCATTAGTGGTTCTATAGCACTATACATAGGGATTATAATCAAAATTTTTA
 481 ACATGTGGTAAGGCACAGACACTGACCAGAACTCAGGCCTTGCAGAAACAGCCTATGGGCCCAGACTGGTACTTCCTGGC
 561 TGAATATTGGCCATGGTTTTAGATGTATTTTATTTTATAACATGAATGTGTATTCTTTCATAAGGGCTTATCAGTCAGTA
 641 TATTTGCCCCAGTGTTTAGTTGTTACAAGGACATGATATGCTTACTTACTATCAGTTTATGATGTAGAAAATATATTTTG
 721 TAATTATAAGAAAACAAGACTTTTCCTATACCCAGAAATCCCTTTGCATTTCCGAAGATCAGATATTTTGCTTAAAGGTC
 801 TGATCATATAGGAAATATATGCAGAACATTTTAAAGAAAATGCCTGGCTGGGCACAGTGGCTCACACCTGTAATCCCAGC
 881 ACTTTGGGAGGCTGAGGCGGGTAGCTCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGATGAAACCCTGTCA
 961 CTACTACAAATAAAAAATTAGCCAGGCATGGTGGTGAGCACCTGTAATGCCAGCTACTCGGGAAGCTGAGGCTGGAGAAT
1041 CGCTTGAACCCAGGAGGTGGTGGTTGTAGTGAACCAAGATCACACCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTC
1121 TGTGTCTAATAAAAAAAAAAAAAGAAAAGAAAAGAAAAAATGCTTAAAGTGCCTAGAACTTAGAATTCTTTCATTGCACA
1201 TTTCCAGAAATATTTTTCTTTTCTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCCCCCAGGCTGGAGTGCAG
1281 TGGCACTATCTTGGCTCACTGCAACCTCCACCTCCCGGGTTTAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAACTGGGA
1361 CTACAGGCACATGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCAGGCTGGT
1441 CTTGAACTCCTGACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCG
1521 GCCTTCCAGAAATATTTTTCAAAGGACTAGTAATCTAATAGCCTATAGTTTATATTATTATTTTGTATTATTTGCACGCT
1601 GTTACATAGTATATAATGATAATGTTTTCTACAGTGAAAGAGCTATCCCGTCTTCCCTTTACAACTGTCTGAACTTTATT
1681 TACTCATTAGTCAAGGTTCTTTGCAAGGCAGGTGATTAACTTAAATATCTCAGTTTATACAGTGGTTTAAAAGACTTTTG
1761 TTATGGTAATAGGGAGAGAAACTTGTCAGATAGGCTAAAATCTAGATAATTCTACATATTCTGAGGAATTCATGCTCCTG
1841 TGGCTCTTGCTTATAAATATCTTGGAATGTTTCTGAATGCCTCTAAGCCTATGTTCAGACTCTGTTGCGTCAATGACTGG
1921 TAGTATTTCTTTCATTAATATGTTTGTCATCTGGTCTGCAAGATAGGGTTGGATGAATATACTTAACACTACTGAACTGT
2001 ACACTTAAAGATCGTTAGGAAGGAAACGGGACTACATCAAACTTAAAAATGTCTGTGTGTCAAAGGAAGCAATCAACAAA
2081 GTGAAAACGCAAGCTCTAGAATGAGAGAAAATAATTGCAAATCGTCTATCTTATAAGGAGCCCAAATCCAGAATATATGA
2161 GGAACTTCTACAACTCAACAACAAAAAACCAAATAACTCAATTTTTAAAAATGGGCAAAGGACTTGCACAGACATTTCTC
2241 CAAAGAAGTTATACAATTGGCCAATAAGAACATGAAAATATGCTCAACATTGCCAATTATTAGGGAAATGCAAATCAAAA
2321 CCACAATGAGATATCGTCTCACGCCCATCATGATGGCCACTATCAGAAGAACAAAAAAATAACAAGTATTGGGGAGGATG
2401 CAGAGAAGTTGAAACCCTTGTGCACTGTTGGTGGTAATGTAAAACGGTGCAGTCATTACGGAAAACAGTACACAGGTTTC
2481 CCAAATAACTGAAAACAGAATTACCATAAGAATTACCACCAAAGCGGGATCTCAAAGAGATATTTGTACACCCATGTTCA
2561 TAGCAGCATTATTCACAATAGCCAAGAGGTTCTGGAAGCATCCCAAATGTCCATCAACAGATGAATAGATAAAGGAAATG
2641 TGGTATATACAGTCAATGGAATATTATTCAGCCTTTAAAAAGAAGGAAATCCTGTCAAATGTACAATGTGGATGAACCTT
2721 GAAGGCATTATGCCAAGTGAAATAAGCCAGCCAACAAAAGAACAAATGCTATATGATTCCTCCATGTGAAGTATGCAAAG
2801 TAGTCAAAATCATACAATAGAAAGTAGAAAGGTGGTTGCCAAGCAACGGTTGGGGGAAGGGGAGAGGGTGAATTTGTATT
2881 TAGTGGGTACAGAGCTTGTGTTGCAAGAATTCTAGAGATCTGTTGCAAAACAAGTGTGATTGTACTTAACACTACTGAAC
2961 TGTATACGTATAAGTTTGAGAAATATCTCTTTTAAAAAGGGGGAAATGTGAAGGCTTTTGCATGTATGCCCTAGGAAATG
3041 CATAGAATTCTTAGAAAGGTAAACATGGTAAAAAAAGAAGTCTTTGTTAACTTTCTGCAGTTCACCTGTTTCAAAGTATA
3121 GTTACCTTTAAAAGGGTAAACACACAAGATATGCATTTTCCAAAGCATACAGGCTTTCCTCCTAGCTGTCTTGTTTTTTA
3201 TTTTTTTTTATTTTTTTTATTTTTTTGAGACAGAGTCGCGCTGTCACCCGGGCTGGAGTGCAGTGGCGCGATCTCGGCTC
3281 ACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCGCCAC
3361 CACACCCGGCTATTTTTTGTATTTTAAGTAGAGACAGGGTTTCACCGTGTTAACCAGGATGGTCTCGATCTGACCTCGTG
3441 ATCCACCCGTCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCTGGCCTTCCTAGCTGTCTTGTGAA
3521 ACGATAAGTCAAAACCCTACTGCAGTGAGTTTTCCAAACTGAAGGGAGAAGCAATGTACAGAATGCCTGACTTGCCCTTA
3601 CATCTTATACCTGGTGTTCTGGCATGATTATTAACCACACTCTTTTTCACTTTGAACCATGTCCTGGTTTGCATGGCCAG
3681 CTTCCCTGCAGAGGTGATAGAAACTGACTTGAGGCAGTTTCTTTCTCCATGCCTTAGTTAGATGACCCTCAAAGGGGCAC
3761 AGCAGATTTCCCTGGCTACTGATACACCTTAACAAGAAGCTTGTGTTTTTTATGCCCTCAAAAGTGTTTTACTTATACTT
3841 TCCTAGACATAAAGGTGGAAAATGGGCCTAAGGTCTGTCAAAGGTCTTGGAAAAGAAGATTGTATTAAAATTGCTGTCCG
3921 TCTTCATTAAATAATACTAGATCGATACAATGCTTTCTTTACAGTATTAGTGGTTGGTGAAAGACTTCCTTCCTATTGTT
4001 ACAGTATATGTATATATCTGTAAAATTAATGAGATATCCTTTAACTTGTAGATTAGAAAGCGACTAAAAACTCATAGGGG
4081 ATTTACTAAAGAAGCAACAATGGGAAGAAGCAGCCGATCCTCCTCAGTGCACCTTTTTCTGTTGCACAGTACAGTGCACA
4161 GTGTGCTGGCATCACCATATAGGGCAAGCTGTGACCGCCTTTCTCCTTTCCCAGGGCTACATGGTGCCAAGCAGGTTCAG
4241 TGTACACTGGTTACCAACCTGTCTGATTCCATTGTGACAGAACACACTCACACCCAATACATTACATGAAGCAGATTTAT
4321 TACTTACAGACAGGAAGCAAGGGACAAAAGAGGCCCTGGCTCCATTGTGAGCCAGTCCCCCAGGGCTCAAGAAAGCTGCC
4401 CAGGGCGGGGCTGATGGAGTCTTGATTGTACGTGCCCCACTTGCACCACAGCCTGCCTTGGGTTATATACCATAGGAGCC
4481 ACATAACTCATTGGGCAAAGCTTTAAAGTACATCCTCCTTCCAGGGGAAAGAGGAACACAACCTCGCTGTCTCAAACAGT
4561 TCCCTAAATCAAGATGTTACATTCCCTAGGAGGGACAACAACAAGGCCAACCTGTTTCAGGCAGTTCCTCCATATCAGGA
4641 TATTGCATTCCCAGTGCATTCTACAGTTATTCTTAAGAACTACAAGCAAGGAAGAAGGGAGAACTGGGTCAGTCCAAGGC
4721 CACCTGGAGAACTGTCTTGTACATGGGTTAGGGTAAAGTTGGCTATTCTAAAACTAAGCATCCGCCCAAAAGAAGTCTTG
4801 GAAGATGTCTTTCCCTGTTAAATTCAGATGATGGTAATTATAGTTTGGAAGTGGAATTGGCTTTTAGAGTTACTTCCTGT
4881 AATGAAATTAACAAGCAATTCAGGCCTATTTCTGAAAATGAATTCAGTGGTTAATTGTTAAAAATAAATGTCTAACTCCT
4961 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            |:: |||:  :| ||||||| 
Target 5' tgCTGCCCAGGCTAGAGTGCAGt 3'
 250 - 272 157.00 -20.00
2 
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|| ||::  :: ||||||| 
Target 5' tgTCACCCGGGCTGGAGTGCAGt 3'
 3242 - 3264 153.00 -18.90
3 
miRNA  3' ucgGUCGGUU--GA-GUGUCACGUcu 5'
             |||||:|  || | |||||||  
Target 5' aagCAGCCGATCCTCCTCAGTGCAcc 3'
 4108 - 4133 150.00 -21.60
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1433976724 3 dbSNP
rs191657961 8 dbSNP
rs1316450989 17 dbSNP
rs756325479 18 dbSNP
rs1439793617 20 dbSNP
rs1467283352 22 dbSNP
rs906302403 30 dbSNP
rs778118240 34 dbSNP
rs887963377 46 dbSNP
rs749309624 47 dbSNP
rs1006450410 50 dbSNP
rs993840360 55 dbSNP
rs1372387354 57 dbSNP
rs1168260240 63 dbSNP
rs1426785072 80 dbSNP
rs1421786752 88 dbSNP
rs1025284880 119 dbSNP
rs1172408627 120 dbSNP
rs770639702 121 dbSNP
rs1356933421 123 dbSNP
rs776091107 124 dbSNP
rs1015165852 127 dbSNP
rs759092334 132 dbSNP
rs962647656 146 dbSNP
rs1289072816 153 dbSNP
rs182611439 160 dbSNP
rs1036107766 161 dbSNP
rs1005912533 178 dbSNP
rs1308716885 188 dbSNP
rs774950288 213 dbSNP
rs113366340 217 dbSNP
rs1297765663 217 dbSNP
rs1433309469 228 dbSNP
rs958777328 231 dbSNP
rs1372303296 232 dbSNP
rs1234223384 233 dbSNP
rs991549968 240 dbSNP
rs762013897 249 dbSNP
rs946537334 253 dbSNP
rs1395563706 286 dbSNP
rs979260508 290 dbSNP
rs1216646850 297 dbSNP
rs1260328121 298 dbSNP
rs1169241710 305 dbSNP
rs767937409 305 dbSNP
rs750875664 306 dbSNP
rs1485032075 311 dbSNP
rs998021142 325 dbSNP
rs1393460977 329 dbSNP
rs1186382682 342 dbSNP
rs878966805 344 dbSNP
rs923879608 356 dbSNP
rs1454607172 358 dbSNP
rs1250306263 365 dbSNP
rs935280899 368 dbSNP
rs762705468 374 dbSNP
rs977478319 375 dbSNP
rs1209476787 387 dbSNP
rs901509324 390 dbSNP
rs925955505 408 dbSNP
rs1423046594 410 dbSNP
rs1233567926 411 dbSNP
rs1304680861 412 dbSNP
rs1334939493 412 dbSNP
rs1392937524 414 dbSNP
rs931696379 438 dbSNP
rs766355299 440 dbSNP
rs1159246367 445 dbSNP
rs756399411 446 dbSNP
rs766746038 455 dbSNP
rs1373761922 460 dbSNP
rs145051570 461 dbSNP
rs1466804130 476 dbSNP
rs1363453388 483 dbSNP
rs992173356 485 dbSNP
rs754548259 490 dbSNP
rs16980138 496 dbSNP
rs1372190912 497 dbSNP
rs1015540205 503 dbSNP
rs1281923582 517 dbSNP
rs1200667724 518 dbSNP
rs898042593 519 dbSNP
rs1258590965 527 dbSNP
rs188171027 529 dbSNP
rs748131155 531 dbSNP
rs12841514 544 dbSNP
rs1327266270 545 dbSNP
rs1215790843 548 dbSNP
rs916160067 549 dbSNP
rs1274112793 553 dbSNP
rs1396681404 559 dbSNP
rs958969916 563 dbSNP
rs1384474761 564 dbSNP
rs1157068551 578 dbSNP
rs1459133993 582 dbSNP
rs1164822076 588 dbSNP
rs1413210478 588 dbSNP
rs1474544110 594 dbSNP
rs777624405 597 dbSNP
rs1260251030 611 dbSNP
rs1187561666 621 dbSNP
rs755743591 641 dbSNP
rs777438623 648 dbSNP
rs746848264 667 dbSNP
rs1206580474 670 dbSNP
rs968816020 671 dbSNP
rs979227969 695 dbSNP
rs1220617669 700 dbSNP
rs950317482 705 dbSNP
rs770551696 715 dbSNP
rs1177229640 726 dbSNP
rs1406629701 733 dbSNP
rs923779831 738 dbSNP
rs1045880192 764 dbSNP
rs1166644655 766 dbSNP
rs1394841701 774 dbSNP
rs956611306 775 dbSNP
rs919404377 776 dbSNP
rs976424146 779 dbSNP
rs922933853 794 dbSNP
rs931624210 809 dbSNP
rs1356734824 812 dbSNP
rs370364024 822 dbSNP
rs1164368002 846 dbSNP
rs1050126367 849 dbSNP
rs28707735 857 dbSNP
rs1190108030 888 dbSNP
rs1465115254 899 dbSNP
rs1251995175 905 dbSNP
rs1211546887 913 dbSNP
rs745340306 935 dbSNP
rs1046787542 938 dbSNP
rs148159921 960 dbSNP
rs1195196361 968 dbSNP
rs898004562 970 dbSNP
rs1003096450 986 dbSNP
rs1057500876 995 dbSNP
rs6632729 999 dbSNP
rs1005216447 1007 dbSNP
rs1366124331 1018 dbSNP
rs1302993849 1020 dbSNP
rs1235276879 1021 dbSNP
rs774658829 1038 dbSNP
rs1352035229 1043 dbSNP
rs1324750120 1047 dbSNP
rs1040061249 1055 dbSNP
rs894752142 1061 dbSNP
rs1393677274 1063 dbSNP
rs1294112552 1086 dbSNP
rs1334491946 1102 dbSNP
rs1449575999 1128 dbSNP
rs1227491760 1130 dbSNP
rs1435944857 1131 dbSNP
rs151015822 1131 dbSNP
rs764011913 1131 dbSNP
rs865937938 1131 dbSNP
rs1275027262 1132 dbSNP
rs1207337151 1140 dbSNP
rs1232422502 1140 dbSNP
rs192697437 1140 dbSNP
rs1287497194 1141 dbSNP
rs1275871380 1145 dbSNP
rs1334465070 1150 dbSNP
rs565525947 1152 dbSNP
rs1310411999 1155 dbSNP
rs1429799218 1156 dbSNP
rs1374360821 1164 dbSNP
rs998470247 1166 dbSNP
rs878940168 1168 dbSNP
rs67004512 1170 dbSNP
rs766670188 1181 dbSNP
rs1176340573 1189 dbSNP
rs1468442010 1190 dbSNP
rs1253828756 1195 dbSNP
rs754119851 1201 dbSNP
rs764549340 1205 dbSNP
rs1251079702 1212 dbSNP
rs1483407339 1218 dbSNP
rs867243112 1219 dbSNP
rs1481781588 1222 dbSNP
rs1290722288 1224 dbSNP
rs1349042725 1224 dbSNP
rs867508350 1224 dbSNP
rs879222467 1224 dbSNP
rs1411046653 1227 dbSNP
rs1189511795 1228 dbSNP
rs1354250181 1228 dbSNP
rs1449587330 1229 dbSNP
rs1418070732 1242 dbSNP
rs1356292911 1243 dbSNP
rs1161762804 1244 dbSNP
rs1422099274 1245 dbSNP
rs1410943782 1248 dbSNP
rs1413964214 1249 dbSNP
rs1159808271 1255 dbSNP
rs1328752415 1256 dbSNP
rs1255339820 1261 dbSNP
rs1180123088 1263 dbSNP
rs1484289490 1267 dbSNP
rs1238246018 1268 dbSNP
rs1369297716 1273 dbSNP
rs1416667005 1274 dbSNP
rs1313594143 1278 dbSNP
rs1355007762 1286 dbSNP
rs1446111788 1289 dbSNP
rs754954723 1292 dbSNP
rs1341209028 1293 dbSNP
rs1215007847 1297 dbSNP
rs1273804917 1311 dbSNP
rs1208538424 1313 dbSNP
rs1229490390 1317 dbSNP
rs1012869064 1326 dbSNP
rs1212339710 1328 dbSNP
rs1390546753 1334 dbSNP
rs1320911632 1338 dbSNP
rs1029519008 1341 dbSNP
rs1415530109 1346 dbSNP
rs1021616393 1348 dbSNP
rs1425597294 1350 dbSNP
rs12849042 1351 dbSNP
rs12849660 1352 dbSNP
rs968742129 1355 dbSNP
rs1414707899 1372 dbSNP
rs1186132764 1381 dbSNP
rs765347192 1382 dbSNP
rs868168717 1390 dbSNP
rs1209704982 1391 dbSNP
rs1468334523 1399 dbSNP
rs1264183725 1400 dbSNP
rs1321792531 1406 dbSNP
rs956760083 1412 dbSNP
rs1184951114 1413 dbSNP
rs1243544937 1414 dbSNP
rs5936051 1415 dbSNP
rs923178032 1420 dbSNP
rs190456167 1421 dbSNP
rs1297922640 1423 dbSNP
rs953309119 1424 dbSNP
rs1437148985 1425 dbSNP
rs1174279111 1427 dbSNP
rs1392069492 1429 dbSNP
rs777623935 1438 dbSNP
rs1412909039 1444 dbSNP
rs1458397996 1445 dbSNP
rs1320522958 1452 dbSNP
rs1353868963 1453 dbSNP
rs1169742669 1454 dbSNP
rs908879157 1456 dbSNP
rs1189511114 1458 dbSNP
rs1392199871 1458 dbSNP
rs1327301004 1467 dbSNP
rs929124211 1468 dbSNP
rs1454085589 1469 dbSNP
rs1265797370 1471 dbSNP
rs1193418336 1476 dbSNP
rs1489060482 1504 dbSNP
rs539436520 1505 dbSNP
rs941734954 1512 dbSNP
rs1036532221 1513 dbSNP
rs757072989 1514 dbSNP
rs1233197323 1515 dbSNP
rs938827811 1519 dbSNP
rs1281028635 1520 dbSNP
rs147335838 1521 dbSNP
rs1198271518 1525 dbSNP
rs894724537 1526 dbSNP
rs1306127998 1533 dbSNP
rs745530009 1535 dbSNP
rs1447243632 1545 dbSNP
rs1051593658 1547 dbSNP
rs1187959014 1548 dbSNP
rs192594931 1553 dbSNP
rs772652770 1563 dbSNP
rs1043000584 1577 dbSNP
rs779612061 1586 dbSNP
rs1178600152 1588 dbSNP
rs748786388 1591 dbSNP
rs1250374495 1598 dbSNP
rs981632362 1599 dbSNP
rs919456594 1600 dbSNP
rs1251980258 1601 dbSNP
rs1209543916 1610 dbSNP
rs1342350269 1611 dbSNP
rs1257421057 1612 dbSNP
rs891241438 1621 dbSNP
rs998922510 1648 dbSNP
rs1233636758 1650 dbSNP
rs1194788256 1651 dbSNP
rs1008713764 1658 dbSNP
rs1286350926 1659 dbSNP
rs1377620594 1665 dbSNP
rs772608452 1675 dbSNP
rs1308658217 1697 dbSNP
rs1032160847 1709 dbSNP
rs773888517 1711 dbSNP
rs909626093 1716 dbSNP
rs1464579553 1719 dbSNP
rs1157568981 1721 dbSNP
rs997750333 1738 dbSNP
rs1413347997 1740 dbSNP
rs1385899988 1751 dbSNP
rs867748994 1753 dbSNP
rs941073182 1755 dbSNP
rs1200712346 1756 dbSNP
rs1319580808 1788 dbSNP
rs1386169208 1795 dbSNP
rs1446310483 1808 dbSNP
rs1266080104 1813 dbSNP
rs1329708309 1822 dbSNP
rs1442918098 1827 dbSNP
rs1030177513 1828 dbSNP
rs1039374158 1835 dbSNP
rs953236322 1843 dbSNP
rs1304029469 1853 dbSNP
rs986063230 1856 dbSNP
rs1230373353 1861 dbSNP
rs1396887654 1866 dbSNP
rs1280814600 1869 dbSNP
rs1388195519 1876 dbSNP
rs1350856389 1880 dbSNP
rs899472803 1892 dbSNP
rs1459181846 1900 dbSNP
rs998114012 1900 dbSNP
rs1015906945 1907 dbSNP
rs963024259 1910 dbSNP
rs775458542 1939 dbSNP
rs1265916591 1959 dbSNP
rs184220366 1964 dbSNP
rs866472835 1969 dbSNP
rs1427499631 1980 dbSNP
rs998683922 1987 dbSNP
rs1210318402 2008 dbSNP
rs1033126351 2011 dbSNP
rs5980189 2014 dbSNP
rs1267241255 2015 dbSNP
rs1431964988 2029 dbSNP
rs557742128 2041 dbSNP
rs1364678972 2042 dbSNP
rs1184002843 2045 dbSNP
rs993374663 2049 dbSNP
rs777193895 2062 dbSNP
rs1366422315 2084 dbSNP
rs1472340091 2086 dbSNP
rs759803763 2089 dbSNP
rs893226012 2093 dbSNP
rs1013396612 2118 dbSNP
rs1022980664 2123 dbSNP
rs971791940 2124 dbSNP
rs768800667 2125 dbSNP
rs878872655 2141 dbSNP
rs1413065858 2143 dbSNP
rs1245967444 2157 dbSNP
rs765421517 2160 dbSNP
rs948950380 2185 dbSNP
rs752802622 2190 dbSNP
rs904813369 2191 dbSNP
rs934640648 2196 dbSNP
rs7055587 2198 dbSNP
rs1341602736 2201 dbSNP
rs1389876540 2213 dbSNP
rs1230972431 2223 dbSNP
rs1366365223 2233 dbSNP
rs901219603 2257 dbSNP
rs1330244509 2273 dbSNP
rs1333298842 2277 dbSNP
rs762795401 2286 dbSNP
rs950920048 2289 dbSNP
rs763977054 2290 dbSNP
rs1335817547 2295 dbSNP
rs1227313731 2296 dbSNP
rs751500221 2297 dbSNP
rs1368210490 2301 dbSNP
rs909332566 2303 dbSNP
rs1234226612 2304 dbSNP
rs1424034275 2316 dbSNP
rs188883239 2322 dbSNP
rs1487760275 2327 dbSNP
rs774063490 2335 dbSNP
rs1181410250 2336 dbSNP
rs1007425530 2337 dbSNP
rs1016168912 2340 dbSNP
rs1207403151 2343 dbSNP
rs1343060337 2344 dbSNP
rs920967103 2350 dbSNP
rs1217788549 2354 dbSNP
rs1347639823 2383 dbSNP
rs780948976 2386 dbSNP
rs1228393904 2387 dbSNP
rs372490716 2390 dbSNP
rs750251341 2423 dbSNP
rs1309245183 2439 dbSNP
rs972133802 2446 dbSNP
rs1025988944 2453 dbSNP
rs960021869 2459 dbSNP
rs759482510 2460 dbSNP
rs1180169115 2467 dbSNP
rs1415925640 2487 dbSNP
rs1425687229 2493 dbSNP
rs1051045921 2507 dbSNP
rs1471537331 2508 dbSNP
rs1414101549 2515 dbSNP
rs139098554 2518 dbSNP
rs1481015437 2519 dbSNP
rs1237101126 2521 dbSNP
rs1208337258 2526 dbSNP
rs948876713 2535 dbSNP
rs978924985 2536 dbSNP
rs767440257 2555 dbSNP
rs903092411 2559 dbSNP
rs1327647542 2562 dbSNP
rs1165136810 2566 dbSNP
rs779620777 2600 dbSNP
rs1377861782 2606 dbSNP
rs1282061570 2607 dbSNP
rs748781337 2613 dbSNP
rs1449849965 2615 dbSNP
rs1359393901 2618 dbSNP
rs1319569232 2625 dbSNP
rs1053489177 2627 dbSNP
rs901191636 2628 dbSNP
rs1390683771 2640 dbSNP
rs1159881441 2647 dbSNP
rs750045957 2647 dbSNP
rs1419720514 2672 dbSNP
rs1413253581 2678 dbSNP
rs1180326167 2683 dbSNP
rs1054317209 2700 dbSNP
rs1244007051 2701 dbSNP
rs892933447 2707 dbSNP
rs934039576 2709 dbSNP
rs768056768 2712 dbSNP
rs1013033622 2721 dbSNP
rs1456251555 2726 dbSNP
rs1049825633 2729 dbSNP
rs1270542678 2730 dbSNP
rs889895233 2732 dbSNP
rs1161087427 2735 dbSNP
rs1320576309 2738 dbSNP
rs1169572762 2740 dbSNP
rs1007394620 2750 dbSNP
rs1371128500 2766 dbSNP
rs1229545119 2782 dbSNP
rs149923271 2785 dbSNP
rs1296446460 2786 dbSNP
rs755616075 2794 dbSNP
rs1367150428 2810 dbSNP
rs899046103 2818 dbSNP
rs375559668 2826 dbSNP
rs1356926856 2848 dbSNP
rs763700278 2849 dbSNP
rs5936052 2850 dbSNP
rs771634360 2851 dbSNP
rs1013904849 2859 dbSNP
rs1230129272 2865 dbSNP
rs1188206666 2868 dbSNP
rs1022652284 2869 dbSNP
rs1250355389 2871 dbSNP
rs1187483845 2877 dbSNP
rs969820508 2886 dbSNP
rs756906361 2901 dbSNP
rs978865041 2903 dbSNP
rs926144229 2907 dbSNP
rs1223066102 2913 dbSNP
rs1359596296 2916 dbSNP
rs950971477 2924 dbSNP
rs1225813579 2936 dbSNP
rs1344026724 2937 dbSNP
rs1295960238 2954 dbSNP
rs779436183 2955 dbSNP
rs1365342182 2960 dbSNP
rs984984184 2961 dbSNP
rs148673226 2969 dbSNP
rs1168183164 2979 dbSNP
rs1427998106 2990 dbSNP
rs1392257640 2994 dbSNP
rs965228330 2999 dbSNP
rs1259708120 3003 dbSNP
rs975212151 3004 dbSNP
rs12851892 3020 dbSNP
rs1486088150 3023 dbSNP
rs989090277 3029 dbSNP
rs12851913 3040 dbSNP
rs1490370401 3042 dbSNP
rs12851914 3044 dbSNP
rs1181483505 3048 dbSNP
rs12850450 3051 dbSNP
rs1254413645 3053 dbSNP
rs1483795277 3055 dbSNP
rs1251551591 3064 dbSNP
rs921009304 3070 dbSNP
rs1303308890 3087 dbSNP
rs1310256911 3087 dbSNP
rs1224108298 3104 dbSNP
rs759870103 3117 dbSNP
rs375796113 3129 dbSNP
rs371010730 3130 dbSNP
rs1195120064 3133 dbSNP
rs933675971 3140 dbSNP
rs746190710 3144 dbSNP
rs1398850037 3152 dbSNP
rs1299011316 3153 dbSNP
rs933986658 3160 dbSNP
rs1049795435 3174 dbSNP
rs1178858141 3182 dbSNP
rs986471468 3182 dbSNP
rs924251871 3183 dbSNP
rs1411885443 3191 dbSNP
rs1384342759 3194 dbSNP
rs865794718 3200 dbSNP
rs1482145334 3201 dbSNP
rs748757429 3201 dbSNP
rs755860818 3201 dbSNP
rs767745106 3201 dbSNP
rs775603375 3201 dbSNP
rs201342194 3204 dbSNP
rs61247855 3204 dbSNP
rs6632731 3205 dbSNP
rs67321658 3205 dbSNP
rs28633488 3210 dbSNP
rs368348669 3210 dbSNP
rs1307973661 3211 dbSNP
rs6632732 3211 dbSNP
rs6632733 3212 dbSNP
rs1400358194 3215 dbSNP
rs1339033334 3219 dbSNP
rs6632734 3220 dbSNP
rs6632735 3221 dbSNP
rs1376582958 3225 dbSNP
rs1054770005 3232 dbSNP
rs1473282182 3235 dbSNP
rs899018900 3236 dbSNP
rs751692722 3238 dbSNP
rs181633991 3239 dbSNP
rs1047627402 3240 dbSNP
rs1464313479 3247 dbSNP
rs1365020095 3248 dbSNP
rs1270452745 3250 dbSNP
rs892995534 3250 dbSNP
rs895745252 3251 dbSNP
rs1261329471 3258 dbSNP
rs1226854495 3260 dbSNP
rs767482209 3266 dbSNP
rs1013873860 3268 dbSNP
rs1453792356 3269 dbSNP
rs1022621018 3270 dbSNP
rs907305815 3271 dbSNP
rs969740082 3285 dbSNP
rs999918834 3289 dbSNP
rs1162083225 3291 dbSNP
rs1455952735 3292 dbSNP
rs1033566304 3293 dbSNP
rs1486983327 3294 dbSNP
rs1448640101 3296 dbSNP
rs371910788 3298 dbSNP
rs989406222 3300 dbSNP
rs1447448301 3301 dbSNP
rs922873480 3304 dbSNP
rs1266628699 3308 dbSNP
rs955640180 3309 dbSNP
rs1294210759 3310 dbSNP
rs186530382 3320 dbSNP
rs911230469 3327 dbSNP
rs941403274 3329 dbSNP
rs903443190 3352 dbSNP
rs1433365509 3353 dbSNP
rs755882511 3356 dbSNP
rs1038469188 3357 dbSNP
rs1384537039 3360 dbSNP
rs1016909172 3362 dbSNP
rs1163813889 3364 dbSNP
rs964944354 3365 dbSNP
rs1387946692 3368 dbSNP
rs1169395570 3369 dbSNP
rs779692348 3374 dbSNP
rs1433243590 3386 dbSNP
rs1196749028 3407 dbSNP
rs918697626 3408 dbSNP
rs1174772653 3419 dbSNP
rs758864620 3424 dbSNP
rs780580456 3427 dbSNP
rs753448078 3428 dbSNP
rs1482828737 3438 dbSNP
rs1048062187 3447 dbSNP
rs1272778710 3448 dbSNP
rs1216667669 3449 dbSNP
rs955109011 3450 dbSNP
rs1274774738 3456 dbSNP
rs1231779038 3476 dbSNP
rs1347953497 3489 dbSNP
rs778649083 3500 dbSNP
rs1455027805 3502 dbSNP
rs1321572774 3505 dbSNP
rs986520925 3509 dbSNP
rs546436017 3510 dbSNP
rs1433433347 3511 dbSNP
rs376588764 3517 dbSNP
rs1306226818 3524 dbSNP
rs1170604673 3525 dbSNP
rs1481336773 3537 dbSNP
rs1429944181 3550 dbSNP
rs1368976095 3555 dbSNP
rs955675404 3557 dbSNP
rs949973140 3559 dbSNP
rs143459956 3574 dbSNP
rs1231363514 3576 dbSNP
rs1206972789 3583 dbSNP
rs1438741575 3597 dbSNP
rs200213506 3598 dbSNP
rs35824487 3600 dbSNP
rs867984688 3600 dbSNP
rs1326230639 3602 dbSNP
rs868453336 3612 dbSNP
rs757821576 3615 dbSNP
rs1267821209 3624 dbSNP
rs1280911232 3643 dbSNP
rs1032741813 3644 dbSNP
rs189749353 3653 dbSNP
rs1254764395 3654 dbSNP
rs746207669 3663 dbSNP
rs1470846292 3664 dbSNP
rs1488785554 3675 dbSNP
rs770055368 3681 dbSNP
rs1422463700 3688 dbSNP
rs1420414130 3690 dbSNP
rs1456773150 3691 dbSNP
rs180710329 3722 dbSNP
rs1410817551 3726 dbSNP
rs1128070 3729 dbSNP
rs1179043328 3730 dbSNP
rs185958020 3736 dbSNP
rs1328369385 3744 dbSNP
rs768769324 3745 dbSNP
rs999013647 3761 dbSNP
rs1436391045 3773 dbSNP
rs1291797312 3779 dbSNP
rs768930282 3781 dbSNP
rs190910008 3790 dbSNP
rs774382129 3800 dbSNP
rs1287942557 3804 dbSNP
rs183419468 3806 dbSNP
rs974504084 3818 dbSNP
rs918676736 3819 dbSNP
rs1006631505 3837 dbSNP
rs1223880964 3842 dbSNP
rs930087284 3857 dbSNP
rs1226305636 3864 dbSNP
rs983271674 3867 dbSNP
rs1291770033 3920 dbSNP
rs917097958 3921 dbSNP
rs900756998 3922 dbSNP
rs996401836 3931 dbSNP
rs1161331203 3932 dbSNP
rs1401385632 3935 dbSNP
rs949940689 3940 dbSNP
rs1413320311 3945 dbSNP
rs769944208 3951 dbSNP
rs879195287 3953 dbSNP
rs1030520759 3954 dbSNP
rs773025077 3954 dbSNP
rs954848553 3961 dbSNP
rs1008006002 3981 dbSNP
rs1483732179 3983 dbSNP
rs35851144 3985 dbSNP
rs66690979 3985 dbSNP
rs1244353888 3990 dbSNP
rs867165030 3992 dbSNP
rs867426947 3993 dbSNP
rs1320635213 3996 dbSNP
rs1031424159 3999 dbSNP
rs955767248 4012 dbSNP
rs1250548728 4015 dbSNP
rs1359727352 4035 dbSNP
rs773052791 4040 dbSNP
rs760461936 4046 dbSNP
rs1432673811 4053 dbSNP
rs914203939 4055 dbSNP
rs1289426300 4061 dbSNP
rs1431539453 4063 dbSNP
rs970398105 4072 dbSNP
rs1301383931 4074 dbSNP
rs1426705886 4085 dbSNP
rs1167465018 4096 dbSNP
rs1168297562 4105 dbSNP
rs1414988657 4113 dbSNP
rs1427160001 4116 dbSNP
rs980014030 4117 dbSNP
rs1187683941 4121 dbSNP
rs1487864903 4133 dbSNP
rs369120363 4138 dbSNP
rs1163261203 4150 dbSNP
rs1054561228 4152 dbSNP
rs1356844022 4153 dbSNP
rs1273495827 4180 dbSNP
rs57459975 4197 dbSNP
rs10521650 4198 dbSNP
rs754647407 4200 dbSNP
rs1218638618 4208 dbSNP
rs111312867 4212 dbSNP
rs1416870297 4213 dbSNP
rs1406865179 4231 dbSNP
rs141206713 4232 dbSNP
rs1307701958 4235 dbSNP
rs1356780648 4236 dbSNP
rs1171578784 4240 dbSNP
rs1433045791 4241 dbSNP
rs1427856865 4242 dbSNP
rs1200900131 4243 dbSNP
rs1227571922 4244 dbSNP
rs1250577930 4255 dbSNP
rs752208704 4267 dbSNP
rs942091866 4273 dbSNP
rs1481486975 4285 dbSNP
rs1344254089 4292 dbSNP
rs1209195473 4299 dbSNP
rs1205198859 4300 dbSNP
rs1321271852 4301 dbSNP
rs1285165016 4307 dbSNP
rs758017730 4326 dbSNP
rs1038107460 4333 dbSNP
rs1481833717 4339 dbSNP
rs1189169759 4363 dbSNP
rs900475230 4370 dbSNP
rs544130855 4379 dbSNP
rs1299062308 4384 dbSNP
rs1469632796 4407 dbSNP
rs1404513155 4414 dbSNP
rs932256431 4429 dbSNP
rs1052001692 4432 dbSNP
rs1007095148 4433 dbSNP
rs1472664249 4436 dbSNP
rs1250819005 4437 dbSNP
rs1180503261 4438 dbSNP
rs781673430 4443 dbSNP
rs746370420 4453 dbSNP
rs1181045664 4460 dbSNP
rs1422226104 4473 dbSNP
rs1264920482 4474 dbSNP
rs1018521780 4482 dbSNP
rs1430961525 4484 dbSNP
rs756699293 4486 dbSNP
rs767391594 4492 dbSNP
rs1328409788 4496 dbSNP
rs1260151262 4500 dbSNP
rs1368773642 4512 dbSNP
rs1318909363 4513 dbSNP
rs1026074255 4516 dbSNP
rs1452337785 4517 dbSNP
rs891542790 4538 dbSNP
rs1339255029 4546 dbSNP
rs780275413 4547 dbSNP
rs749691831 4548 dbSNP
rs969736691 4567 dbSNP
rs768842454 4569 dbSNP
rs1454936749 4579 dbSNP
rs980011248 4580 dbSNP
rs992664261 4581 dbSNP
rs774578087 4595 dbSNP
rs1442529444 4611 dbSNP
rs760158351 4643 dbSNP
rs1282242268 4655 dbSNP
rs1464356582 4656 dbSNP
rs1259601752 4662 dbSNP
rs1203445292 4667 dbSNP
rs1486913913 4675 dbSNP
rs1261528181 4695 dbSNP
rs949868958 4696 dbSNP
rs1357576745 4700 dbSNP
rs1317533223 4703 dbSNP
rs1247196297 4707 dbSNP
rs979942694 4717 dbSNP
rs983254739 4724 dbSNP
rs1367187330 4737 dbSNP
rs907672323 4741 dbSNP
rs927203089 4762 dbSNP
rs1383406325 4768 dbSNP
rs1385118881 4775 dbSNP
rs1302001473 4777 dbSNP
rs5936053 4785 dbSNP
rs1054085669 4802 dbSNP
rs190631964 4810 dbSNP
rs1201729620 4842 dbSNP
rs973502246 4847 dbSNP
rs945789446 4859 dbSNP
rs1474989673 4869 dbSNP
rs1371238896 4876 dbSNP
rs1195328081 4877 dbSNP
rs1278833783 4880 dbSNP
rs1050820923 4883 dbSNP
rs1262451889 4884 dbSNP
rs1221853700 4885 dbSNP
rs1489905781 4909 dbSNP
rs1156496631 4933 dbSNP
rs1223642673 4937 dbSNP
rs1441521101 4950 dbSNP
rs1208377355 4961 dbSNP
rs1268920225 4970 dbSNP
rs1230185668 4978 dbSNP
rs1282045060 5003 dbSNP
rs5021752 5005 dbSNP
rs756996289 5010 dbSNP
rs576289981 5012 dbSNP
rs1303425499 5016 dbSNP
rs760528280 5017 dbSNP
rs931999588 5024 dbSNP
rs1388903829 5042 dbSNP
rs1428558709 5049 dbSNP
rs766381494 5054 dbSNP
rs1479036057 5055 dbSNP
rs1479518513 5059 dbSNP
rs776270596 5060 dbSNP
rs996165324 5066 dbSNP
rs1199921451 5071 dbSNP
rs6527639 5072 dbSNP
rs1412983487 5081 dbSNP
rs890720862 5086 dbSNP
rs951445604 5087 dbSNP
rs1221121758 5092 dbSNP
rs1390541744 5095 dbSNP
rs1283512671 5096 dbSNP
rs1052622632 5102 dbSNP
rs764947235 5103 dbSNP
rs1330597934 5106 dbSNP
rs1410367420 5108 dbSNP
rs1405220013 5117 dbSNP
rs1025012070 5118 dbSNP
rs1468284803 5118 dbSNP
rs1011770551 5120 dbSNP
rs183607236 5123 dbSNP
rs1021356127 5126 dbSNP
rs1446466650 5132 dbSNP
rs979869021 5141 dbSNP
rs1231417181 5144 dbSNP
rs1234735838 5158 dbSNP
rs905563459 5162 dbSNP
rs1243069078 5166 dbSNP
rs1202394176 5180 dbSNP
rs1326302440 5181 dbSNP
rs1263149562 5182 dbSNP
rs927130864 5184 dbSNP
rs1348046912 5190 dbSNP
rs957285498 5191 dbSNP
rs1217102856 5205 dbSNP
rs758768071 5206 dbSNP
rs1454443606 5211 dbSNP
rs757919885 5221 dbSNP
rs913179136 5222 dbSNP
rs763494770 5223 dbSNP
rs1176831610 5224 dbSNP
rs1400234306 5225 dbSNP
rs1406034300 5239 dbSNP
rs150447419 5240 dbSNP
rs1384925965 5250 dbSNP
rs1182144915 5273 dbSNP
rs1463006502 5284 dbSNP
rs1238584772 5288 dbSNP
rs1001147548 5309 dbSNP
rs1035282679 5312 dbSNP
rs756543864 5316 dbSNP
rs1453866363 5319 dbSNP
rs780658293 5337 dbSNP
rs754151139 5340 dbSNP
rs138264570 5341 dbSNP
rs942435355 5357 dbSNP
rs779039156 5358 dbSNP
rs748356731 5361 dbSNP
rs1430087528 5365 dbSNP
rs1039857039 5371 dbSNP
rs775836177 5377 dbSNP
rs1320371825 5379 dbSNP
rs1420474348 5387 dbSNP
rs1384867969 5388 dbSNP
rs1162010813 5393 dbSNP
rs1446859117 5397 dbSNP
rs772404804 5399 dbSNP
rs898671652 5403 dbSNP
rs983305329 5417 dbSNP
rs762933894 5424 dbSNP
rs1474717744 5430 dbSNP
rs12839530 5435 dbSNP
rs16980147 5441 dbSNP
rs747162988 5460 dbSNP
rs1490073325 5469 dbSNP
rs1289197241 5477 dbSNP
rs770728014 5483 dbSNP
rs139393167 5496 dbSNP
rs1024938326 5497 dbSNP
rs1212665994 5498 dbSNP
rs1015182002 5503 dbSNP
rs1271951027 5517 dbSNP
rs1400719486 5531 dbSNP
rs1319682633 5544 dbSNP
rs1301591203 5553 dbSNP
rs142675825 5562 dbSNP
rs778961926 5566 dbSNP
rs969404351 5579 dbSNP
rs755371615 5580 dbSNP
rs1329999343 5592 dbSNP
rs769720607 5594 dbSNP
rs922034315 5600 dbSNP
rs953410558 5615 dbSNP
rs1329457583 5619 dbSNP
rs1228125672 5622 dbSNP
rs144444251 5623 dbSNP
rs1488604729 5630 dbSNP
rs1250491183 5632 dbSNP
rs762688313 5635 dbSNP
rs763844827 5637 dbSNP
rs1258671339 5642 dbSNP
rs1219300261 5650 dbSNP
rs1345041471 5658 dbSNP
rs1281466677 5670 dbSNP
rs112173984 5672 dbSNP
rs1267345596 5676 dbSNP
rs1449904736 5693 dbSNP
rs1184470218 5703 dbSNP
rs1252763810 5706 dbSNP
rs1460826861 5709 dbSNP
rs1356765672 5711 dbSNP
rs1172089144 5713 dbSNP
rs761406425 5727 dbSNP
rs913141067 5728 dbSNP
rs1158075227 5733 dbSNP
rs766755191 5740 dbSNP
rs946902844 5746 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067869. RNA binding protein: AGO2. Condition:Ago2 IP-seq (asynchronous cells) HITS-CLIP data was present in GSM1067870. RNA binding protein: AGO2. Condition:Ago2 IP-seq (mitotic cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucggUCGGUUGAGUGUCACGUCu 5'
              | ||::  :: ||||||| 
Target 5' ----ACCCGGGCUGGAGUGCAGu 3'
 		1 - 19
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
CLIP-seq Support 1 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_007220 | 3UTR | CUCUGCUGCCCAGGCUAGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_007220 | 3UTR | UGGAGUGCAGUGGCGCGAUCUCGGCUCACUGCAAGCUCCGCCUCCCGGGUUCACGCCAUUCUCCUGCCUCAGCCUCCUGAGUAGCUGGGACUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_007220 | 3UTR | CUGGAGUGCAGUGGCGCGAUCUCGGCUCACUGCAAGCUCCGCCUCCCGGGUUCACGCCAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_007220 | 3UTR | UGGAGUGCAGUGGCGCGAUCUCGGCUCACUGCAAGCUCCGCCUCCCGGGUUCACGCCAUUCUCCUGCCUCAGCCUCCUGAGUAGCUGGGACUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_007220 | 3UTR | UGGAGUGCAGUGGCGCGAUCUCGGCUCACUGCAAGCUCCGCCUCCCGGGUUCACGCCAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_007220 | 3UTR | GUGCAGUGGCGCGAUCUCGGCUCACUGCAAGCUCCGCCUCCCGGGUUCACGCCAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_007220 | 3UTR | UGGAGUGCAGUGGCGCGAUCUCGGCUCACUGCAAGCUCCGCCUCCCGGGUUCACGCCAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1067869
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (asynchronous cells)
Location of target site ENST00000454127.2 | 3UTR | CACCCGGGCUGGAGUGCAGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1067870
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (mitotic cells)
Location of target site ENST00000454127.2 | 3UTR | ACCCGGGCUGGAGUGCAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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