pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol AAED1   
Synonyms C9orf21
Description AhpC/TSA antioxidant enzyme domain containing 1
Transcript NM_153698   
Expression
Putative miRNA Targets on AAED1
3'UTR of AAED1
(miRNA target sites are highlighted)
>AAED1|NM_153698|3'UTR
   1 CTTAAAATGCACTCAGTCACTTTCAACTGGACCTTCTGGAATGTGACCTTCAATGCCTGGGTGTAATATCCTCGTGCAGT
  81 GTCTAACCTGCTGTCCCTTCCCAGCCTTTGAGGAGTTAGGGAAGCATAAAGGGGGCTTGAACCTGTTGAATTGCATGCTG
 161 GGAAGCATCAGTTGTCAAAATATGTTATATACTTCCATTTTATAACTTTTAACATTTTATACAAAAAAAATGAATATACA
 241 AAATATAACTTTAAAAGCTATAAAATCATAAATACTCTAAATTATTTTACATTATGGTATATTCAGTCAATGAAAGAGTT
 321 TTTTGGCAATATAAATTCTGACAGTATATAAGGGGACAGGAGAACAACACAAGACCATTATATTCAGTGAAGAAGGCAAA
 401 ATATCAAATCTGTCAACAATGTAACTGCATTTTTATATGTATATATTTGTATTTTTGTATGCTTTGGAAAAAGACAGGAA
 481 ATAAACACCAAAATGTTGCCAGTAGGTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gguaGAAGGAAGUCGGAg 5'
              |||||  |||||| 
Target 5' gtccCTTCC--CAGCCTt 3'
93 - 108 129.00 -15.30
2
miRNA  3' ggUAGA-AGGAAGU--CGGAg 5'
            || |  ||||||  |||| 
Target 5' gaATGTGACCTTCAATGCCTg 3'
39 - 59 116.00 -11.40
3
miRNA  3' gguagaaggAAGUCGGag 5'
                   |||||:|  
Target 5' tatggtataTTCAGTCaa 3'
293 - 310 109.00 -6.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30165933 1 COSMIC
COSN30511513 13 COSMIC
COSN30143406 30 COSMIC
COSN20345427 32 COSMIC
COSN31534182 74 COSMIC
COSN31510564 131 COSMIC
COSN30497582 142 COSMIC
COSN30189142 162 COSMIC
COSN32062655 165 COSMIC
COSN28782240 191 COSMIC
COSN7578908 239 COSMIC
COSN28084675 699 COSMIC
COSN23910327 1255 COSMIC
COSN23921863 1256 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs138737168 1 dbSNP
rs372486104 12 dbSNP
rs1008166318 14 dbSNP
rs1438669314 19 dbSNP
rs776008132 26 dbSNP
rs763600709 27 dbSNP
rs1250645920 30 dbSNP
rs1418093970 33 dbSNP
rs1461660843 40 dbSNP
rs761143298 44 dbSNP
rs1471193738 54 dbSNP
rs181375725 63 dbSNP
rs1359134601 68 dbSNP
rs546934940 73 dbSNP
rs1045122076 74 dbSNP
rs1409364889 76 dbSNP
rs1286760480 78 dbSNP
rs1223937910 82 dbSNP
rs948107386 83 dbSNP
rs896496099 87 dbSNP
rs528772616 97 dbSNP
rs541443440 106 dbSNP
rs1251317481 119 dbSNP
rs1053291542 126 dbSNP
rs1369584969 132 dbSNP
rs1164790870 134 dbSNP
rs570683294 135 dbSNP
rs935623464 143 dbSNP
rs934402985 146 dbSNP
rs979663646 151 dbSNP
rs1247967950 152 dbSNP
rs552382021 155 dbSNP
rs1183985458 156 dbSNP
rs1173166717 169 dbSNP
rs1355178402 171 dbSNP
rs1483242873 183 dbSNP
rs1267979853 184 dbSNP
rs1367643713 189 dbSNP
rs1405808799 192 dbSNP
rs1220002250 196 dbSNP
rs1292675573 211 dbSNP
rs1361452236 221 dbSNP
rs1365233608 223 dbSNP
rs1265965045 225 dbSNP
rs145187742 231 dbSNP
rs946865836 231 dbSNP
rs975162764 231 dbSNP
rs902703168 232 dbSNP
rs963766825 232 dbSNP
rs1315257621 236 dbSNP
rs1019304184 237 dbSNP
rs754388756 239 dbSNP
rs565188116 241 dbSNP
rs1221293607 244 dbSNP
rs1309410962 245 dbSNP
rs1410708955 246 dbSNP
rs1345245613 249 dbSNP
rs1487745552 253 dbSNP
rs947003913 256 dbSNP
rs1188784890 265 dbSNP
rs986452175 266 dbSNP
rs951355249 267 dbSNP
rs916828287 272 dbSNP
rs1166744509 275 dbSNP
rs1387179617 280 dbSNP
rs1425465844 285 dbSNP
rs532846899 291 dbSNP
rs990993394 303 dbSNP
rs147155053 310 dbSNP
rs1452424249 315 dbSNP
rs1361603119 319 dbSNP
rs939363148 328 dbSNP
rs1364321766 329 dbSNP
rs1402066242 331 dbSNP
rs927959162 332 dbSNP
rs995388897 339 dbSNP
rs973247608 341 dbSNP
rs961467152 342 dbSNP
rs898333268 358 dbSNP
rs1320264174 359 dbSNP
rs1218342376 362 dbSNP
rs143630506 364 dbSNP
rs983949313 367 dbSNP
rs1187237664 370 dbSNP
rs1245041950 372 dbSNP
rs1445379560 372 dbSNP
rs188625567 382 dbSNP
rs1196933144 396 dbSNP
rs1028249302 403 dbSNP
rs185571017 404 dbSNP
rs540499016 417 dbSNP
rs1173636875 428 dbSNP
rs1056412068 435 dbSNP
rs1267956312 435 dbSNP
rs1204551799 438 dbSNP
rs1338691604 443 dbSNP
rs1382866305 457 dbSNP
rs900851899 467 dbSNP
rs1481486414 471 dbSNP
rs999930838 475 dbSNP
rs1031316258 478 dbSNP
rs1375010294 478 dbSNP
rs999039263 486 dbSNP
rs1129517 487 dbSNP
rs1207376402 493 dbSNP
rs1044377059 498 dbSNP
rs1265594351 506 dbSNP
rs1323020787 507 dbSNP
rs1281632119 509 dbSNP
rs904263502 532 dbSNP
rs1332111090 534 dbSNP
rs1295457885 537 dbSNP
rs1381070948 540 dbSNP
rs946950242 543 dbSNP
rs1387805979 546 dbSNP
rs1178000678 550 dbSNP
rs573085533 553 dbSNP
rs1321920629 556 dbSNP
rs781629242 558 dbSNP
rs1471519523 573 dbSNP
rs1404825096 593 dbSNP
rs1173884541 597 dbSNP
rs1478882007 600 dbSNP
rs1413865360 602 dbSNP
rs1378027092 608 dbSNP
rs942456498 610 dbSNP
rs1350230010 620 dbSNP
rs1426613360 621 dbSNP
rs1226989181 625 dbSNP
rs73656916 626 dbSNP
rs1346266175 633 dbSNP
rs1200397984 639 dbSNP
rs1276509783 640 dbSNP
rs116736147 645 dbSNP
rs1206117160 650 dbSNP
rs1251420142 650 dbSNP
rs1471468637 651 dbSNP
rs1460977153 652 dbSNP
rs371859847 652 dbSNP
rs951113455 659 dbSNP
rs918226475 661 dbSNP
rs974402275 692 dbSNP
rs1261497030 695 dbSNP
rs1421011718 698 dbSNP
rs962636821 703 dbSNP
rs1055317432 704 dbSNP
rs546056701 720 dbSNP
rs1368276996 725 dbSNP
rs1269928994 732 dbSNP
rs1225739545 735 dbSNP
rs1367885689 737 dbSNP
rs1305277136 744 dbSNP
rs138106729 746 dbSNP
rs1233155206 747 dbSNP
rs557126998 758 dbSNP
rs1341528212 760 dbSNP
rs1012013848 762 dbSNP
rs1274048889 763 dbSNP
rs972747676 764 dbSNP
rs180960736 767 dbSNP
rs767142798 774 dbSNP
rs1267791343 779 dbSNP
rs1450882786 783 dbSNP
rs568326091 791 dbSNP
rs189275413 792 dbSNP
rs1167061756 797 dbSNP
rs984168312 798 dbSNP
rs534963884 804 dbSNP
rs1189217729 808 dbSNP
rs1426091933 808 dbSNP
rs1163900886 812 dbSNP
rs1391886630 814 dbSNP
rs1386609541 816 dbSNP
rs1028134882 817 dbSNP
rs1322109034 821 dbSNP
rs774093801 822 dbSNP
rs965309983 825 dbSNP
rs770737646 827 dbSNP
rs1011588960 837 dbSNP
rs1241413585 838 dbSNP
rs900743118 838 dbSNP
rs1266311481 844 dbSNP
rs1355339596 850 dbSNP
rs1207804902 854 dbSNP
rs7046055 859 dbSNP
rs552343190 860 dbSNP
rs1187857625 861 dbSNP
rs1245661406 866 dbSNP
rs531057854 870 dbSNP
rs1445991386 872 dbSNP
rs904146669 875 dbSNP
rs1187782158 880 dbSNP
rs912350832 890 dbSNP
rs1021338283 894 dbSNP
rs185712465 895 dbSNP
rs1194378950 896 dbSNP
rs1344828169 897 dbSNP
rs550365171 900 dbSNP
rs1363095314 901 dbSNP
rs1454686795 903 dbSNP
rs901778930 905 dbSNP
rs1012592337 907 dbSNP
rs1242902644 919 dbSNP
rs11299970 928 dbSNP
rs1208014925 928 dbSNP
rs1254896000 928 dbSNP
rs1262201962 928 dbSNP
rs1329691458 928 dbSNP
rs1476301917 928 dbSNP
rs1275971566 929 dbSNP
rs1245935182 935 dbSNP
rs750016047 943 dbSNP
rs1358074829 945 dbSNP
rs1038646624 946 dbSNP
rs1159036406 948 dbSNP
rs1468051667 949 dbSNP
rs1303445107 950 dbSNP
rs918268032 952 dbSNP
rs1449621223 956 dbSNP
rs1309496141 957 dbSNP
rs973749201 962 dbSNP
rs1340645324 966 dbSNP
rs962623921 967 dbSNP
rs895337436 972 dbSNP
rs1327841430 978 dbSNP
rs1286256499 980 dbSNP
rs1389460420 981 dbSNP
rs916493094 994 dbSNP
rs193249150 995 dbSNP
rs1169118276 996 dbSNP
rs1423874684 1002 dbSNP
rs369910101 1003 dbSNP
rs575431210 1004 dbSNP
rs1473173755 1010 dbSNP
rs1435358686 1011 dbSNP
rs1034775488 1019 dbSNP
rs1377124185 1022 dbSNP
rs1464651294 1023 dbSNP
rs1000035773 1034 dbSNP
rs1409465744 1035 dbSNP
rs577952185 1038 dbSNP
rs1305889003 1042 dbSNP
rs1369550061 1047 dbSNP
rs966790565 1050 dbSNP
rs376881309 1051 dbSNP
rs1309906406 1053 dbSNP
rs1010889462 1055 dbSNP
rs906778526 1057 dbSNP
rs1340949878 1061 dbSNP
rs900795449 1063 dbSNP
rs1037481083 1066 dbSNP
rs1192260036 1067 dbSNP
rs7029007 1070 dbSNP
rs909843049 1071 dbSNP
rs1170509262 1083 dbSNP
rs1390877258 1083 dbSNP
rs1048526066 1085 dbSNP
rs1429270500 1092 dbSNP
rs546121434 1099 dbSNP
rs1351386317 1100 dbSNP
rs1047870152 1104 dbSNP
rs921126451 1110 dbSNP
rs1365346771 1113 dbSNP
rs1278563299 1117 dbSNP
rs1226246257 1119 dbSNP
rs929731140 1120 dbSNP
rs1225710114 1122 dbSNP
rs896881921 1123 dbSNP
rs1323846410 1124 dbSNP
rs976573044 1126 dbSNP
rs189046298 1131 dbSNP
rs1351974289 1144 dbSNP
rs965713670 1151 dbSNP
rs924554242 1152 dbSNP
rs941021794 1155 dbSNP
rs369150943 1156 dbSNP
rs1186879677 1157 dbSNP
rs990699063 1157 dbSNP
rs563510551 1158 dbSNP
rs968426276 1160 dbSNP
rs1163738372 1161 dbSNP
rs1021223788 1165 dbSNP
rs374908491 1166 dbSNP
rs184279480 1175 dbSNP
rs1363797719 1177 dbSNP
rs1033844899 1184 dbSNP
rs1003714248 1194 dbSNP
rs1379377676 1196 dbSNP
rs943046822 1201 dbSNP
rs1227395664 1208 dbSNP
rs1473665432 1210 dbSNP
rs1413012516 1211 dbSNP
rs989516622 1212 dbSNP
rs1211106052 1213 dbSNP
rs1489979357 1213 dbSNP
rs1206852229 1215 dbSNP
rs1239299478 1216 dbSNP
rs1248963608 1219 dbSNP
rs1181564452 1220 dbSNP
rs1223002824 1220 dbSNP
rs1473477810 1231 dbSNP
rs1451654407 1240 dbSNP
rs1282888347 1241 dbSNP
rs1209650490 1243 dbSNP
rs1222569275 1243 dbSNP
rs1230582714 1243 dbSNP
rs1280823797 1243 dbSNP
rs1289400654 1243 dbSNP
rs1300770707 1243 dbSNP
rs1329012315 1243 dbSNP
rs1353922891 1243 dbSNP
rs1359238128 1243 dbSNP
rs1441602268 1243 dbSNP
rs1443136872 1243 dbSNP
rs1446827865 1243 dbSNP
rs1455597226 1243 dbSNP
rs34951542 1243 dbSNP
rs57395499 1243 dbSNP
rs576309753 1243 dbSNP
rs1206320838 1244 dbSNP
rs1425238957 1245 dbSNP
rs1413452868 1246 dbSNP
rs1330696139 1251 dbSNP
rs1288606631 1253 dbSNP
rs1222657520 1255 dbSNP
rs552933134 1256 dbSNP
rs1276507792 1257 dbSNP
rs778372814 1259 dbSNP
rs1277171033 1260 dbSNP
rs1344557622 1261 dbSNP
rs1345767625 1261 dbSNP
rs1318576842 1263 dbSNP
rs1458889667 1264 dbSNP
rs1389578625 1268 dbSNP
rs1341932421 1277 dbSNP
rs1176067736 1281 dbSNP
rs1247175728 1288 dbSNP
rs1431774715 1288 dbSNP
rs1427756071 1289 dbSNP
rs1477670538 1293 dbSNP
rs1192162844 1294 dbSNP
rs906658405 1300 dbSNP
rs1475353386 1306 dbSNP
rs148266166 1310 dbSNP
rs1017580071 1311 dbSNP
rs1186061760 1317 dbSNP
rs1465910922 1318 dbSNP
rs1004846606 1321 dbSNP
rs1167641679 1324 dbSNP
rs1268361837 1325 dbSNP
rs1009173990 1326 dbSNP
rs1202681400 1328 dbSNP
rs888470687 1329 dbSNP
rs1310190910 1334 dbSNP
rs1325979744 1342 dbSNP
rs1335515607 1346 dbSNP
rs1436403098 1347 dbSNP
rs1301257806 1348 dbSNP
rs1471239236 1349 dbSNP
rs890684993 1350 dbSNP
rs1026920381 1354 dbSNP
rs1337734422 1359 dbSNP
rs375408574 1365 dbSNP
rs903574997 1367 dbSNP
rs1290346156 1368 dbSNP
rs1048411183 1370 dbSNP
rs1361104008 1371 dbSNP
rs932755012 1376 dbSNP
rs1249335176 1384 dbSNP
rs1449597830 1386 dbSNP
rs1295329177 1391 dbSNP
rs1038128263 1392 dbSNP
rs1459138717 1395 dbSNP
rs372094979 1401 dbSNP
rs577116746 1402 dbSNP
rs1405286599 1405 dbSNP
rs1464690718 1406 dbSNP
rs1361152391 1410 dbSNP
rs1054695715 1411 dbSNP
rs1390895909 1413 dbSNP
rs939295829 1428 dbSNP
rs927889441 1430 dbSNP
rs978363615 1431 dbSNP
rs368673706 1432 dbSNP
rs1284570529 1433 dbSNP
rs1355456986 1440 dbSNP
rs943893577 1444 dbSNP
rs915018181 1450 dbSNP
rs1191124499 1455 dbSNP
rs1425112897 1456 dbSNP
rs924411914 1456 dbSNP
rs1187900632 1459 dbSNP
rs1369397183 1460 dbSNP
rs1475112842 1462 dbSNP
rs1248156004 1464 dbSNP
rs773208674 1465 dbSNP
rs964760175 1472 dbSNP
rs147955449 1482 dbSNP
rs969022201 1492 dbSNP
rs143664673 1493 dbSNP
rs1397996410 1505 dbSNP
rs914268893 1508 dbSNP
rs1339624529 1509 dbSNP
rs570116991 1510 dbSNP
rs548787216 1511 dbSNP
rs1272351573 1512 dbSNP
rs535182396 1527 dbSNP
rs1342814621 1528 dbSNP
rs1483980540 1529 dbSNP
rs140468832 1538 dbSNP
rs1003004781 1541 dbSNP
rs994118030 1545 dbSNP
rs769690155 1547 dbSNP
rs970936205 1550 dbSNP
rs1016280113 1554 dbSNP
rs1254424849 1559 dbSNP
rs754525913 1577 dbSNP
rs1314421517 1579 dbSNP
rs1004357272 1583 dbSNP
rs888626793 1584 dbSNP
rs1381546945 1588 dbSNP
rs1467686298 1593 dbSNP
rs1303705998 1609 dbSNP
rs1027033725 1611 dbSNP
rs1375020017 1616 dbSNP
rs1441929949 1620 dbSNP
rs1369136811 1622 dbSNP
rs1413179596 1628 dbSNP
rs57883397 1630 dbSNP
rs1350947682 1633 dbSNP
rs146817614 1636 dbSNP
rs1304846591 1638 dbSNP
rs1313406119 1642 dbSNP
rs1233287634 1644 dbSNP
rs1041038569 1645 dbSNP
rs894879960 1647 dbSNP
rs1163380674 1649 dbSNP
rs1206936307 1656 dbSNP
rs1421555162 1659 dbSNP
rs1242479713 1666 dbSNP
rs1466365838 1666 dbSNP
rs1483616575 1666 dbSNP
rs59028960 1666 dbSNP
rs750499955 1666 dbSNP
rs373639589 1670 dbSNP
rs1054748365 1671 dbSNP
rs1461330533 1674 dbSNP
rs1482594016 1677 dbSNP
rs1369578485 1679 dbSNP
rs1387284966 1680 dbSNP
rs1302058959 1683 dbSNP
rs1249288964 1685 dbSNP
rs1207073416 1692 dbSNP
rs1483305877 1695 dbSNP
rs944059756 1701 dbSNP
rs1274963433 1704 dbSNP
rs557056948 1711 dbSNP
rs538439634 1712 dbSNP
rs1489714072 1717 dbSNP
rs145053522 1718 dbSNP
rs552463650 1720 dbSNP
rs1042309416 1723 dbSNP
rs1421968009 1726 dbSNP
rs1190719195 1731 dbSNP
rs945250940 1739 dbSNP
rs530853736 1741 dbSNP
rs747103440 1742 dbSNP
rs753488522 1743 dbSNP
rs58884236 1751 dbSNP
rs758659202 1763 dbSNP
rs1436600457 1767 dbSNP
rs991319153 1778 dbSNP
rs145332921 1793 dbSNP
rs928413707 1797 dbSNP
rs574827059 1798 dbSNP
rs962029517 1803 dbSNP
rs1455928952 1804 dbSNP
rs1484636499 1805 dbSNP
rs1222917016 1807 dbSNP
rs1369747986 1810 dbSNP
rs1015814597 1815 dbSNP
rs1273152296 1816 dbSNP
rs1467549127 1816 dbSNP
rs1210613381 1817 dbSNP
rs1248736288 1823 dbSNP
rs1164893168 1835 dbSNP
rs559465942 1836 dbSNP
rs1185060103 1840 dbSNP
rs541128669 1840 dbSNP
rs866803827 1842 dbSNP
rs983442309 1849 dbSNP
rs1409317813 1853 dbSNP
rs1163994076 1854 dbSNP
rs1415520102 1861 dbSNP
rs954737534 1866 dbSNP
rs1184015299 1868 dbSNP
rs372636078 1869 dbSNP
rs1428196264 1871 dbSNP
rs972357485 1874 dbSNP
rs1381755870 1876 dbSNP
rs1027148783 1877 dbSNP
rs997046964 1879 dbSNP
rs1333253613 1882 dbSNP
rs899900456 1896 dbSNP
rs1208034932 1898 dbSNP
rs1316464880 1900 dbSNP
rs1016411907 1906 dbSNP
rs1489492104 1915 dbSNP
rs150068867 1922 dbSNP
rs1008199416 1933 dbSNP
rs903189143 1938 dbSNP
rs75000149 1939 dbSNP
rs779369484 1940 dbSNP
rs537318415 1941 dbSNP
rs766007901 1944 dbSNP
rs576705188 1945 dbSNP
rs554851473 1946 dbSNP
rs575916382 1960 dbSNP
rs928377306 1961 dbSNP
rs1412198451 1966 dbSNP
rs1280687316 1979 dbSNP
rs1293537024 1990 dbSNP
rs1456265967 2011 dbSNP
rs760392355 2019 dbSNP
rs1348790850 2047 dbSNP
rs1210515165 2049 dbSNP
rs570907237 2051 dbSNP
rs943183731 2053 dbSNP
rs910349552 2059 dbSNP
rs940331759 2062 dbSNP
rs1161015772 2063 dbSNP
rs1457548287 2064 dbSNP
rs367984175 2064 dbSNP
rs1376904379 2074 dbSNP
rs1196505599 2075 dbSNP
rs1468554649 2076 dbSNP
rs1192370962 2084 dbSNP
rs1425264867 2085 dbSNP
rs1433703135 2091 dbSNP
rs1171418353 2093 dbSNP
rs148935100 2102 dbSNP
rs1329999706 2103 dbSNP
rs1431974068 2103 dbSNP
rs200451808 2103 dbSNP
rs1440659803 2114 dbSNP
rs952928207 2121 dbSNP
rs1027263441 2124 dbSNP
rs1371887305 2126 dbSNP
rs919284017 2129 dbSNP
rs1301572791 2133 dbSNP
rs187081938 2133 dbSNP
rs1187939689 2136 dbSNP
rs1196107532 2144 dbSNP
rs1463644263 2148 dbSNP
rs1435939271 2156 dbSNP
rs1223761485 2157 dbSNP
rs1253056902 2166 dbSNP
rs972456869 2173 dbSNP
rs1209638737 2181 dbSNP
rs568160010 2183 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067870. RNA binding protein: AGO2. Condition:Ago2 IP-seq (mitotic cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gguAGAAGGAAGUCGGAg 5'
             ||| || ||||||| 
Target 5' aauUCUGCC-UCAGCCUc 3'
1 - 17
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
CLIP-seq Support 1 for dataset GSM1067870
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (mitotic cells)
Location of target site ENST00000375234.3 | 3UTR | AAUUCUGCCUCAGCCUCCCAAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

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