pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol DUSP19   
Synonyms DUSP17, LMWDSP3, SKRP1, TS-DSP1
Description dual specificity phosphatase 19
Transcript NM_001142314   
Other Transcripts NM_080876   
Expression
Putative miRNA Targets on DUSP19
3'UTR of DUSP19
(miRNA target sites are highlighted)
>DUSP19|NM_001142314|3'UTR
   1 GTTGCATTGTAGCAGACAATGGACAACTGTAGTTTCTGAATTGACTTCTATAGCCATCTTTTCCCTTTTTTGGAGAGTAG
  81 ACTAGCAAAACTCCCTTTTTTCTCTTGCCTTTTTTATGCATAAATGGAGGTCAATTTGATTGTCCTGACCTACTGTATAA
 161 GTAAATTTCAAATGTCATTACTTTCTCTTTGTTATTATAATGTGTGATTAAATGCTTTTTTAAATTGCTAAGGGAAAATA
 241 ACAAAGTGTTAGTAATCATTGCTTTCTGTAGAAGAAAAAGGTTTAAATTTAAAATGTGTATTTAGAGCATGGAGAGAATC
 321 ATTTAATGAAGCCTATTTTTCTGTTCCAGCAACTGTTTTTATGAAAGAAAAACTTGAAATGCTACTTAACTTACTATTTC
 401 AAAGGGAAGTATATTTCTTTTTAAAGAATCTTTTTAAGATTAAAAATGAATACCTTAAATCTCCCAAAAGAGATAACCAG
 481 TATCTGAAGGTTTATACAATATTTACACAGTGGCTACAATATTCACAAAATTCTTATGTTCTCTTATGAAAAATATACAC
 561 TTTTCATTTTGTCTTCTTCTTTTTTTTTCTTTTTTTAGATGGAGTTTGGCTCTTGTCACCCAGGCTGGAGTGCAATGGCG
 641 CAATCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCCCAGCCTCCCATATAGCTGGGATTATA
 721 GGTGCCTGCCACCATGCCCAGCTAATTTTTGTGTTTTTAGTAGAGATGGAGTCTCACCACATAGGCCAGGCAGTCTCGAA
 801 CTCCTGACCTCAGGTGATCCACCCACCTTGGCCTCTCTAAATACTGGGATTACAGGCGTGAGCCACTGCATCCGACCTCA
 881 TTTTGTTTTTTTCAATTCTGTTATCGGCATTTCTTTCTTTTTTTTTTTAATGTATAGGTGTTCTGTCATACGTTATTGTG
 961 AGCTTTGGTTCTTTGAACAGGTGATCTATTCTCTTACATTTTGTGCTTTTTATCTTGGGTGCCTAGCATTCTGTTTTTTT
1041 GATCCTATGTCATAATTTTTTGAGAAAATGTTTGATACTGCAAGATCATTGTTTAGTGGTCTGTTTTCTACTTCAGTATT
1121 CTACCAGAGAACATATTTTTTAGGGGAGAAGGGTTATGGTTTTGTAAGAAACTTTAAATATACTTTTAGGAGACCCACAA
1201 TCATTTACAGTTTTATCTTTGGCCTTTGAATAGGTTCTTTTTTCTTTAATGTCTCCGTATTTGAAGAACTGAGCTCTGTA
1281 CATTATAAATTTGCTTAAAGATTTTGATTTTTTCTTCAGAATATGGTATACTTAAAATTAATTAATTAAGACAGTTTCTT
1361 TTTTCTTTTCTTTTTTTTTTTTTTCGAGACAGGGTCTTGCTCTGTCACCTAGGCTAGAGTGGAGTGGCATGAACACAACG
1441 CACTGCAGCCTCTACCTCCTGGGCTCAAGCAGTCCTCCCACCTCAGTCTCCTGAGTAGCTGAGACTACAGCTGTGCGCCA
1521 CCACATCTGGCTAATTTTATTTTTATTTTTGTAGAGACAGGAGTCTTGCCATGTTGCCCAGGCTGATCTCAAACTCCTAG
1601 GCTTAAGTGATCCTCCCGCCTTAGCCTCCCAAGTGCTAGGATTACAGGCATCAGCCACCACGCCTGGCCTGATAGTTTCC
1681 ACATAGTTTTTCATGACTTAGAAGATATCATTGCCATGTAGGTTTTATTTTTAAAAGTCTTGAGCTCTTCTTAAATATAC
1761 ATTATAAAGAGCAAGCATAGATGGAAAGTGCATATTGAACACATCTGTGCATTTGAGAAGGCAGGCTTTCATATGCTGTC
1841 ATGAGCAAAAAGTAGAAGTGATAAATGCAAGTTATGTTTTGAGATTGCTTACACCGTGACAAGATGCCATCACTTGTGAT
1921 GTTATGAACTGTTATAAACTCTTTGCTTCTGCTAAGAAGCAGTCTAAATATAATCAACGTACAGTGAGCTCTTTGAAGCC
2001 AACCAAGGCAGGCAGAACCCTCTTAAATATGAGACTGATGTATAGGTTCTCTCTATGGTCAGTATCACTGGATAAGCCTT
2081 CTCCTTTCATAAGAAAGGATGTATTTAAATACATTTTATTTTGCTAAATCCTGTTTAGTTTTCAGCCATTAAATGTCACA
2161 TGAAGCCTTGATAGAATTTGTTCATAATGGCTCATGTATTATTATTATTTTTGAGATGGAGTTTTGCTCTTAATGATATT
2241 ATTATTATTTGAGACAGAGTTTTGCTCTTATTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTG
2321 CCTCCCAGCTTCAAGCGATTCTCCTGTATCAGCCTCCCAAGTAGCTGGGATTATAGGCATGTGCCACCATGCCCAGCAAA
2401 TTTTGTATTTTTTTTTGGTAGAGACAGGGTTCAACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCGCAAGTGATCCA
2481 CACGCCTTGGTCTCCCAAAGTGCTGGGATTACGGTGTTAGCCACTACACCTGGCCTGGATTGTGTATTATTTATGTCTGT
2561 AGTTTATATGCTTAGTTGTTGCCTATAGTGATCTGGGTAAGATTCAAACATTTATCTTTTGTATCTTCTACAGAAGTGCT
2641 TTGAGCATCAAATTTGTTTTAACGTTAAATTGTAGTTTGCTGTATTAAAATAGATCAATGAATATAATTCAGTCTTTTAG
2721 GGGCACCAAGTAAAGCATAAGGTCATATATACTATACAATATGTTTATTGCACTTCCCATGGGGATAAATCACTCTGTCA
2801 TTCCTAGTTATTTTAAAAAAAGAACTTTATGATTACGGTCCTCTTTCTCACATACTGCAAACTTAAAAGATACATACACC
2881 AAATATAGGTCTGTTTTAAAGGAGAGGAAAAATAGTTCAAGGAGTTTTTGCCTCTTTGTTTTTCAATAGATTATTCTGCC
2961 ATTTTTTAAAGGAAAGGGAAAATGAAAACAGCATGTCTTTTTAAACATTGAAAAGAAATATGGAGGCTTTAAACCGCAAA
3041 CTGAAAAAGCTGAGTAGAACAAAGGCAGTGGAGCATACAATACAATTCTATTTATTTGAGGTTAATTGAAGTTAATAATT
3121 TTTAAATTTTTTTCTAATTTTATGCCTTAAAATAGGTTTCTGATTACATAAAATTTGAATAGAACACTCAAGAAGTATGT
3201 AGATTTTTGAAAAACCCAAACAATATTCTTCTTAGATTTTTGGAGGCAAAATTTAGACCAGTATACTAATTCAAAAGACA
3281 AATATTTCAGAGGAAGTGGAGTACAGTATTTAACATTTTGTTTGCAATTTTACTTTTTCTTCCCTTCTTCCCTATTGAAC
3361 CTTGATTAAAATGTATGAATACAATACTTGGATTTTTTTTTTTCAGCTTAGACTCTGATAATTTCAGTGGTAGTGGGGAA
3441 ACCTGAATTTGTCAGCATGATTATTTGTAACTCAGATTGTTCAAATGTATATAGAAGGTCCCCTTCAAGTGTTGTTTCTC
3521 CAAGTAGTCATAAATGTAGCAAGTATAAATCAGAATATCATCTTATAATCTTACAGAGTTAACCTAATGAGTCAATACCT
3601 TTATAAGCAAAACCATGATAAATTTAAAAACAACAGAAATGTGGCATGATTACTTATTTATTTGTTCCAGGTGACTCTAA
3681 ATAGTTGATTTTTCTGCCTGAAGGATCCTGAACATATTTAGTTACCCTGTAGTTATTTAGGAATTTAAACCAGAAGACTT
3761 TGAAGTTGTATATTCTTGCAATGCATAAAATGACATTATAATCAACAAACTTATGGTTTGTTTCAATTGATGCACACAAA
3841 AAATAACTTATAGTTAGACTTTTCTATTTCAAGTAAAGCTTTGAGTTACTTGTTTTTATACATATTCATCATGTACCCTT
3921 TATTGTTTCTAGGTGTTGATATACTTTAATAAAAATGATATGTTTAATATTTTCCCATTAATATATTTCTTTGAAGCTAT
4001 TTGTTTTAAAAGATGTAACACTTATTTGCTGTCAAATTCTGAATTAAAAAATCTGTTGGTGGCCAGGCGCAGTGGCTCAT
4081 GCCTGTAATCCCAACATTTTGGGAGGCCAAGGAGATGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTGGCCAACATG
4161 GCAAAACCCCATCACTAAAAATACAAAAATTACCCGGGCATGGTGGTGGGTGCCTGTAATCCCAGCTTCTTAGGAGGCTG
4241 AGGTAGGAGAATTGCTTGACCCTGGGAGGTGGAGGTGGCAGTGAGCCGAGATAGCACCACTGCACTTCTAGTTGACAGAG
4321 TGAGACTCTGACTCAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            | | ||||| :||||||| 
Target 5' ccTCCCGCCTTAGCCTCCCAa 3'
1612 - 1632 167.00 -20.80
2
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  :||||||| 
Target 5' acTGCAACCTCTGCCTCCCAg 3'
2308 - 2328 167.00 -29.30
3
miRNA  3' ugacGU-CGGAACUGGAGGGUc 5'
              || ||||||::|||||| 
Target 5' tccaCACGCCTTGGTCTCCCAa 3'
2477 - 2498 157.00 -25.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30473958 64 COSMIC
COSN17426167 92 COSMIC
COSN19671416 137 COSMIC
COSN6157572 138 COSMIC
COSN30109099 178 COSMIC
COSN30121788 180 COSMIC
COSN29924831 369 COSMIC
COSN1810504 409 COSMIC
COSN26078869 580 COSMIC
COSN32061245 580 COSMIC
COSN27023952 624 COSMIC
COSN20097476 893 COSMIC
COSN20097478 929 COSMIC
COSN4799676 1051 COSMIC
COSN22855390 1062 COSMIC
COSN31520901 1337 COSMIC
COSN6157573 1542 COSMIC
COSN15021663 1781 COSMIC
COSN5785759 2137 COSMIC
COSN27879387 2215 COSMIC
COSN16902988 2545 COSMIC
COSN1810505 2647 COSMIC
COSN23686416 2664 COSMIC
COSN20617699 2838 COSMIC
COSN27149323 3066 COSMIC
COSN21126892 3194 COSMIC
COSN29511456 3195 COSMIC
COSN20097484 3403 COSMIC
COSN24138905 3521 COSMIC
COSN20090685 3704 COSMIC
COSN27774133 3855 COSMIC
COSN20090686 4028 COSMIC
COSN26357305 4069 COSMIC
COSN16002194 4091 COSMIC
COSN7150246 4167 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1476596844 3 dbSNP
rs1401029792 7 dbSNP
rs1239659406 9 dbSNP
rs1336496927 10 dbSNP
rs780501461 13 dbSNP
rs373510412 20 dbSNP
rs377469252 23 dbSNP
rs1438726556 25 dbSNP
rs1370559383 27 dbSNP
rs1161362891 29 dbSNP
rs573841927 31 dbSNP
rs748381584 32 dbSNP
rs1407476946 38 dbSNP
rs757529411 41 dbSNP
rs1362698233 42 dbSNP
rs770023394 43 dbSNP
rs1053934097 45 dbSNP
rs1295029129 46 dbSNP
rs1341107699 51 dbSNP
rs1383231395 65 dbSNP
rs199585473 71 dbSNP
rs954256479 74 dbSNP
rs915322991 81 dbSNP
rs770484426 83 dbSNP
rs945445298 85 dbSNP
rs35941903 92 dbSNP
rs1453219889 96 dbSNP
rs1200513557 102 dbSNP
rs1253277093 102 dbSNP
rs1397246816 103 dbSNP
rs1438007434 105 dbSNP
rs1445118646 106 dbSNP
rs1277218591 108 dbSNP
rs1372192991 109 dbSNP
rs1224030989 110 dbSNP
rs906538498 116 dbSNP
rs1205430513 119 dbSNP
rs1355779040 121 dbSNP
rs939302677 124 dbSNP
rs769657935 132 dbSNP
rs13399265 137 dbSNP
rs1332482937 154 dbSNP
rs371765838 158 dbSNP
rs1304507257 165 dbSNP
rs977075484 174 dbSNP
rs553032042 177 dbSNP
rs1325122733 181 dbSNP
rs924279489 188 dbSNP
rs183355256 206 dbSNP
rs1005812893 216 dbSNP
rs915699134 218 dbSNP
rs1395142346 222 dbSNP
rs545163324 223 dbSNP
rs564931675 230 dbSNP
rs772440563 240 dbSNP
rs1489125278 243 dbSNP
rs888538081 243 dbSNP
rs1360891017 247 dbSNP
rs1255369274 267 dbSNP
rs533572435 270 dbSNP
rs1210042740 275 dbSNP
rs1480989047 297 dbSNP
rs1485418160 299 dbSNP
rs1279419845 311 dbSNP
rs544108446 317 dbSNP
rs564028310 320 dbSNP
rs1269776954 321 dbSNP
rs371465234 328 dbSNP
rs531506014 329 dbSNP
rs1311648722 333 dbSNP
rs998372261 334 dbSNP
rs1414696757 339 dbSNP
rs1028588933 347 dbSNP
rs112595479 359 dbSNP
rs987745017 362 dbSNP
rs1017887871 364 dbSNP
rs1011070571 371 dbSNP
rs1022917850 382 dbSNP
rs1328732043 391 dbSNP
rs537259255 402 dbSNP
rs771860418 410 dbSNP
rs1353460713 412 dbSNP
rs968460940 414 dbSNP
rs964928816 421 dbSNP
rs990062515 429 dbSNP
rs1239071645 436 dbSNP
rs915371459 455 dbSNP
rs1436116739 456 dbSNP
rs1272619670 461 dbSNP
rs1442278394 475 dbSNP
rs945490029 490 dbSNP
rs1291824754 491 dbSNP
rs978190991 496 dbSNP
rs1031317804 498 dbSNP
rs959705621 511 dbSNP
rs1439441880 514 dbSNP
rs1223223202 518 dbSNP
rs1353391122 523 dbSNP
rs1331689419 527 dbSNP
rs1466858904 532 dbSNP
rs1391745848 534 dbSNP
rs1163967093 538 dbSNP
rs1461726432 539 dbSNP
rs1415915164 542 dbSNP
rs992521632 556 dbSNP
rs376955456 557 dbSNP
rs939374671 567 dbSNP
rs1179572702 572 dbSNP
rs1358164279 574 dbSNP
rs528459718 575 dbSNP
rs1271449334 578 dbSNP
rs1222549010 580 dbSNP
rs201951308 580 dbSNP
rs948685386 580 dbSNP
rs1309358680 582 dbSNP
rs1368361744 583 dbSNP
rs551469779 583 dbSNP
rs941250149 584 dbSNP
rs1272189087 586 dbSNP
rs1308224746 588 dbSNP
rs200555012 589 dbSNP
rs7603240 590 dbSNP
rs1485441932 592 dbSNP
rs1189139821 593 dbSNP
rs1260099185 595 dbSNP
rs1156911886 598 dbSNP
rs1474616441 599 dbSNP
rs537272751 600 dbSNP
rs1159347165 601 dbSNP
rs1167902924 601 dbSNP
rs1420840263 604 dbSNP
rs1441574964 613 dbSNP
rs1410044269 617 dbSNP
rs961072587 619 dbSNP
rs940071186 627 dbSNP
rs1038650364 633 dbSNP
rs556910851 636 dbSNP
rs567432269 640 dbSNP
rs1214007753 641 dbSNP
rs1287306590 644 dbSNP
rs1029399551 648 dbSNP
rs933982501 650 dbSNP
rs1302303351 654 dbSNP
rs1386980748 657 dbSNP
rs1313088544 660 dbSNP
rs1342103426 662 dbSNP
rs890855645 664 dbSNP
rs1006573312 672 dbSNP
rs1361121009 674 dbSNP
rs1017919312 682 dbSNP
rs762622217 683 dbSNP
rs989744143 688 dbSNP
rs890034781 691 dbSNP
rs10200193 694 dbSNP
rs1185166750 700 dbSNP
rs1347208221 702 dbSNP
rs1211920664 705 dbSNP
rs1280977486 707 dbSNP
rs1219409906 720 dbSNP
rs1445700284 724 dbSNP
rs751055154 728 dbSNP
rs966888711 730 dbSNP
rs1233260237 738 dbSNP
rs570635196 741 dbSNP
rs1243211308 744 dbSNP
rs1476646691 745 dbSNP
rs1292943253 752 dbSNP
rs1189974579 759 dbSNP
rs978644481 761 dbSNP
rs928068145 762 dbSNP
rs902701116 767 dbSNP
rs1374705185 768 dbSNP
rs1302348390 771 dbSNP
rs1466572753 773 dbSNP
rs1361147855 774 dbSNP
rs553293779 780 dbSNP
rs1477727842 783 dbSNP
rs998576102 792 dbSNP
rs1031411055 794 dbSNP
rs572884879 798 dbSNP
rs959799649 799 dbSNP
rs992505834 804 dbSNP
rs761350712 810 dbSNP
rs768005961 813 dbSNP
rs544972261 816 dbSNP
rs1023088242 817 dbSNP
rs1249306755 818 dbSNP
rs969966900 821 dbSNP
rs1317315791 827 dbSNP
rs558705747 830 dbSNP
rs1326991662 834 dbSNP
rs1318415869 836 dbSNP
rs984447603 839 dbSNP
rs909695067 842 dbSNP
rs916579615 845 dbSNP
rs1396719096 853 dbSNP
rs1437243486 858 dbSNP
rs575211955 859 dbSNP
rs941310249 865 dbSNP
rs1038277981 868 dbSNP
rs918439877 874 dbSNP
rs922685045 875 dbSNP
rs544282125 878 dbSNP
rs1368433088 879 dbSNP
rs139694174 886 dbSNP
rs1049712626 889 dbSNP
rs1276831232 891 dbSNP
rs889784864 896 dbSNP
rs929843941 900 dbSNP
rs563759927 906 dbSNP
rs1285342311 907 dbSNP
rs1304967120 918 dbSNP
rs55951106 918 dbSNP
rs902795814 920 dbSNP
rs999675043 921 dbSNP
rs1212432795 929 dbSNP
rs397792703 929 dbSNP
rs200646305 930 dbSNP
rs1056686866 931 dbSNP
rs1252917634 931 dbSNP
rs1453274878 932 dbSNP
rs1193652466 933 dbSNP
rs1379031784 935 dbSNP
rs1468250223 939 dbSNP
rs895561347 945 dbSNP
rs1014428584 952 dbSNP
rs750985938 953 dbSNP
rs890886546 977 dbSNP
rs1385469187 980 dbSNP
rs529489856 989 dbSNP
rs1267789728 994 dbSNP
rs562560279 996 dbSNP
rs970149098 998 dbSNP
rs1285164637 1006 dbSNP
rs1323881182 1011 dbSNP
rs1005440935 1020 dbSNP
rs892794207 1022 dbSNP
rs1232363041 1024 dbSNP
rs188189598 1026 dbSNP
rs1324630900 1029 dbSNP
rs1383477259 1034 dbSNP
rs756626132 1046 dbSNP
rs1298092795 1074 dbSNP
rs1419832385 1078 dbSNP
rs1381613468 1089 dbSNP
rs1171443177 1090 dbSNP
rs1016796486 1091 dbSNP
rs1377788350 1092 dbSNP
rs528471932 1095 dbSNP
rs1200767702 1113 dbSNP
rs1303436576 1114 dbSNP
rs1217226333 1116 dbSNP
rs796250253 1139 dbSNP
rs1334232909 1141 dbSNP
rs1022525254 1145 dbSNP
rs967337594 1152 dbSNP
rs999659113 1154 dbSNP
rs1344607235 1159 dbSNP
rs1275620789 1161 dbSNP
rs201935643 1176 dbSNP
rs1231774163 1183 dbSNP
rs1273125184 1193 dbSNP
rs573186521 1195 dbSNP
rs571600087 1196 dbSNP
rs1362936205 1197 dbSNP
rs1310560193 1199 dbSNP
rs1209947310 1203 dbSNP
rs990857581 1204 dbSNP
rs879163120 1205 dbSNP
rs1173941907 1207 dbSNP
rs1402515180 1207 dbSNP
rs34475351 1212 dbSNP
rs1474335172 1217 dbSNP
rs916598876 1219 dbSNP
rs1194029492 1221 dbSNP
rs1478769300 1223 dbSNP
rs1255257279 1239 dbSNP
rs1208148438 1242 dbSNP
rs770148384 1248 dbSNP
rs985965003 1250 dbSNP
rs192136678 1251 dbSNP
rs1202382317 1256 dbSNP
rs755206837 1257 dbSNP
rs918523975 1258 dbSNP
rs2675069 1265 dbSNP
rs1446707500 1266 dbSNP
rs1473451618 1280 dbSNP
rs1340531924 1282 dbSNP
rs2368335 1283 dbSNP
rs1399020283 1286 dbSNP
rs1171151957 1287 dbSNP
rs1417106037 1289 dbSNP
rs1415632768 1308 dbSNP
rs536408631 1308 dbSNP
rs912396243 1309 dbSNP
rs942459772 1322 dbSNP
rs1472542910 1323 dbSNP
rs758612082 1324 dbSNP
rs1056612327 1325 dbSNP
rs1039456380 1329 dbSNP
rs763257807 1332 dbSNP
rs892815127 1332 dbSNP
rs1237748168 1333 dbSNP
rs1456623596 1333 dbSNP
rs896660063 1336 dbSNP
rs1013981891 1338 dbSNP
rs1288415370 1340 dbSNP
rs1044552607 1342 dbSNP
rs905642546 1347 dbSNP
rs1011256970 1349 dbSNP
rs371279686 1352 dbSNP
rs1390888912 1353 dbSNP
rs1329796752 1354 dbSNP
rs1331568682 1359 dbSNP
rs902767947 1359 dbSNP
rs1016596792 1361 dbSNP
rs1164080586 1366 dbSNP
rs979921685 1366 dbSNP
rs1405889061 1370 dbSNP
rs1415805267 1370 dbSNP
rs1168100978 1371 dbSNP
rs1437865281 1371 dbSNP
rs34201127 1371 dbSNP
rs548999532 1371 dbSNP
rs764293383 1371 dbSNP
rs999732476 1375 dbSNP
rs1352498918 1377 dbSNP
rs1221217927 1385 dbSNP
rs1245346349 1385 dbSNP
rs765595639 1385 dbSNP
rs1413349219 1386 dbSNP
rs1237372730 1387 dbSNP
rs1309606740 1395 dbSNP
rs1241864769 1408 dbSNP
rs1364971252 1411 dbSNP
rs1292745622 1416 dbSNP
rs6759305 1418 dbSNP
rs1436874255 1419 dbSNP
rs553306019 1440 dbSNP
rs1035185675 1441 dbSNP
rs1379926689 1443 dbSNP
rs1159553008 1446 dbSNP
rs1441611591 1447 dbSNP
rs1423216176 1451 dbSNP
rs1191094820 1452 dbSNP
rs1247692556 1463 dbSNP
rs1248772089 1475 dbSNP
rs1470645822 1478 dbSNP
rs994046374 1482 dbSNP
rs566742364 1483 dbSNP
rs960848723 1506 dbSNP
rs1029425415 1509 dbSNP
rs1286279576 1516 dbSNP
rs150141445 1517 dbSNP
rs745737895 1518 dbSNP
rs985338404 1520 dbSNP
rs963088723 1523 dbSNP
rs974109178 1525 dbSNP
rs911278507 1538 dbSNP
rs4363996 1555 dbSNP
rs1369663408 1560 dbSNP
rs1194666660 1572 dbSNP
rs968199812 1573 dbSNP
rs1360997771 1580 dbSNP
rs1455579238 1583 dbSNP
rs1357462282 1588 dbSNP
rs1175481188 1593 dbSNP
rs1434204021 1598 dbSNP
rs1432090112 1606 dbSNP
rs918542492 1611 dbSNP
rs1483803291 1613 dbSNP
rs558306157 1618 dbSNP
rs183208873 1619 dbSNP
rs1264405944 1622 dbSNP
rs935530897 1626 dbSNP
rs1256590918 1627 dbSNP
rs912427555 1635 dbSNP
rs942489603 1639 dbSNP
rs370148048 1646 dbSNP
rs975218394 1656 dbSNP
rs1210219267 1658 dbSNP
rs1313513004 1661 dbSNP
rs751562380 1662 dbSNP
rs138566038 1663 dbSNP
rs1368881438 1670 dbSNP
rs1041423808 1674 dbSNP
rs902842217 1675 dbSNP
rs1384089858 1681 dbSNP
rs935615039 1684 dbSNP
rs879409049 1685 dbSNP
rs775302453 1686 dbSNP
rs948208761 1690 dbSNP
rs1408462298 1700 dbSNP
rs76899775 1705 dbSNP
rs1465596460 1706 dbSNP
rs1045262544 1711 dbSNP
rs575563059 1717 dbSNP
rs1173015219 1718 dbSNP
rs574162975 1719 dbSNP
rs1255050249 1723 dbSNP
rs542768101 1728 dbSNP
rs758280674 1733 dbSNP
rs896842674 1738 dbSNP
rs1294061892 1761 dbSNP
rs1326293580 1771 dbSNP
rs898582280 1777 dbSNP
rs144587429 1778 dbSNP
rs1320963672 1783 dbSNP
rs1312262363 1812 dbSNP
rs891067749 1822 dbSNP
rs573167493 1832 dbSNP
rs1329428299 1834 dbSNP
rs1007132480 1835 dbSNP
rs1401675044 1846 dbSNP
rs1169938680 1851 dbSNP
rs1456706359 1852 dbSNP
rs148055228 1859 dbSNP
rs1018140567 1862 dbSNP
rs1446117126 1868 dbSNP
rs1377896506 1881 dbSNP
rs1426829011 1896 dbSNP
rs749081709 1897 dbSNP
rs951346582 1898 dbSNP
rs1208341365 1910 dbSNP
rs979514632 1914 dbSNP
rs565180371 1915 dbSNP
rs1324567020 1925 dbSNP
rs768319951 1926 dbSNP
rs544440383 1930 dbSNP
rs1019559591 1941 dbSNP
rs956706203 1955 dbSNP
rs560679834 1974 dbSNP
rs963925064 1979 dbSNP
rs1239518675 1980 dbSNP
rs992191394 1986 dbSNP
rs1331437693 1989 dbSNP
rs918146882 1992 dbSNP
rs143866262 1994 dbSNP
rs948371952 2006 dbSNP
rs1294513656 2008 dbSNP
rs975277483 2020 dbSNP
rs1259603168 2023 dbSNP
rs1157747929 2024 dbSNP
rs914390587 2030 dbSNP
rs1427810050 2038 dbSNP
rs74942329 2041 dbSNP
rs1196623388 2043 dbSNP
rs557949028 2050 dbSNP
rs529934989 2053 dbSNP
rs1224456780 2060 dbSNP
rs546780563 2065 dbSNP
rs938369617 2066 dbSNP
rs1354472568 2067 dbSNP
rs566653077 2073 dbSNP
rs538965821 2074 dbSNP
rs1331049466 2076 dbSNP
rs896749371 2091 dbSNP
rs552445313 2096 dbSNP
rs1006816276 2098 dbSNP
rs1407141969 2102 dbSNP
rs1018485960 2112 dbSNP
rs948266510 2114 dbSNP
rs903705008 2121 dbSNP
rs1000923384 2129 dbSNP
rs1170319684 2159 dbSNP
rs1045276031 2161 dbSNP
rs1366810495 2162 dbSNP
rs1201585449 2166 dbSNP
rs1476708228 2172 dbSNP
rs898651804 2173 dbSNP
rs568802229 2177 dbSNP
rs1193171528 2186 dbSNP
rs1231352246 2188 dbSNP
rs1302254898 2193 dbSNP
rs1198807838 2194 dbSNP
rs1344488608 2196 dbSNP
rs766954696 2205 dbSNP
rs995630106 2216 dbSNP
rs772713106 2219 dbSNP
rs760120780 2234 dbSNP
rs1349643215 2237 dbSNP
rs761130090 2256 dbSNP
rs1400176227 2266 dbSNP
rs1212015126 2268 dbSNP
rs187861491 2278 dbSNP
rs1019589204 2283 dbSNP
rs1394939780 2285 dbSNP
rs1209347789 2288 dbSNP
rs1249817415 2291 dbSNP
rs1178467405 2292 dbSNP
rs1464031552 2293 dbSNP
rs147242520 2295 dbSNP
rs975730829 2296 dbSNP
rs766844127 2299 dbSNP
rs574168215 2308 dbSNP
rs1185761603 2309 dbSNP
rs1426160136 2310 dbSNP
rs1243865411 2315 dbSNP
rs536464895 2316 dbSNP
rs553178377 2325 dbSNP
rs1215523293 2328 dbSNP
rs977258528 2334 dbSNP
rs767864347 2336 dbSNP
rs755367160 2337 dbSNP
rs1458082147 2338 dbSNP
rs1243670740 2347 dbSNP
rs765486131 2362 dbSNP
rs1323218383 2363 dbSNP
rs191214987 2365 dbSNP
rs959748863 2371 dbSNP
rs1392847520 2377 dbSNP
rs992455618 2383 dbSNP
rs1338164111 2384 dbSNP
rs753121436 2389 dbSNP
rs1292397820 2394 dbSNP
rs758702019 2396 dbSNP
rs1411418579 2408 dbSNP
rs201690998 2408 dbSNP
rs1045708908 2409 dbSNP
rs1472609505 2411 dbSNP
rs929761441 2414 dbSNP
rs920127765 2418 dbSNP
rs777964201 2422 dbSNP
rs931490825 2423 dbSNP
rs545333137 2430 dbSNP
rs1185513017 2435 dbSNP
rs1456774828 2437 dbSNP
rs1047196763 2440 dbSNP
rs887195786 2442 dbSNP
rs1205898268 2444 dbSNP
rs1269951807 2446 dbSNP
rs756536022 2456 dbSNP
rs1439893280 2457 dbSNP
rs1288215948 2458 dbSNP
rs565532646 2463 dbSNP
rs575551328 2469 dbSNP
rs747104393 2470 dbSNP
rs1041102733 2476 dbSNP
rs1237321178 2479 dbSNP
rs140863214 2484 dbSNP
rs184165295 2485 dbSNP
rs1444342877 2486 dbSNP
rs1272427844 2509 dbSNP
rs1175759901 2510 dbSNP
rs1021980218 2512 dbSNP
rs968637492 2513 dbSNP
rs1473131131 2514 dbSNP
rs756871009 2516 dbSNP
rs999103324 2517 dbSNP
rs1165774747 2524 dbSNP
rs1031426543 2525 dbSNP
rs892548859 2526 dbSNP
rs959819969 2531 dbSNP
rs530249811 2534 dbSNP
rs1013686605 2537 dbSNP
rs1245292139 2540 dbSNP
rs1221305685 2547 dbSNP
rs1490635645 2554 dbSNP
rs868823829 2556 dbSNP
rs1461416908 2557 dbSNP
rs779893363 2560 dbSNP
rs1166081169 2569 dbSNP
rs1352294569 2587 dbSNP
rs915606507 2594 dbSNP
rs1350025356 2603 dbSNP
rs1437986326 2604 dbSNP
rs1225344395 2611 dbSNP
rs1365423054 2616 dbSNP
rs1273958440 2618 dbSNP
rs547097296 2624 dbSNP
rs560439470 2638 dbSNP
rs1025370745 2648 dbSNP
rs1305160498 2664 dbSNP
rs973066686 2665 dbSNP
rs1344641652 2677 dbSNP
rs532340090 2689 dbSNP
rs1402888902 2699 dbSNP
rs931545968 2710 dbSNP
rs552199838 2715 dbSNP
rs1191184538 2719 dbSNP
rs778421688 2723 dbSNP
rs908704032 2727 dbSNP
rs944135918 2738 dbSNP
rs1271552928 2753 dbSNP
rs749102848 2755 dbSNP
rs899891615 2760 dbSNP
rs1260741660 2770 dbSNP
rs997267312 2772 dbSNP
rs1043029417 2777 dbSNP
rs1277808072 2780 dbSNP
rs569087103 2786 dbSNP
rs972198186 2791 dbSNP
rs1332367044 2793 dbSNP
rs72890381 2801 dbSNP
rs1031500097 2806 dbSNP
rs1290488251 2809 dbSNP
rs1361536424 2815 dbSNP
rs951095767 2815 dbSNP
rs1289744880 2826 dbSNP
rs912185498 2829 dbSNP
rs986585763 2829 dbSNP
rs959852519 2838 dbSNP
rs1470607870 2844 dbSNP
rs1431842757 2851 dbSNP
rs1039802365 2854 dbSNP
rs925190014 2855 dbSNP
rs1013981234 2863 dbSNP
rs1261988341 2865 dbSNP
rs1187957142 2870 dbSNP
rs1481974662 2873 dbSNP
rs78117021 2875 dbSNP
rs1204174179 2880 dbSNP
rs1232545046 2886 dbSNP
rs1255848337 2893 dbSNP
rs1217784382 2897 dbSNP
rs567703133 2900 dbSNP
rs533686454 2916 dbSNP
rs1296535888 2923 dbSNP
rs1184577747 2927 dbSNP
rs1255912843 2930 dbSNP
rs2138485 2945 dbSNP
rs1183025220 2948 dbSNP
rs771856105 2951 dbSNP
rs771743296 2972 dbSNP
rs905298060 2975 dbSNP
rs1329997118 2978 dbSNP
rs983021290 2980 dbSNP
rs1430043677 2990 dbSNP
rs746964444 2992 dbSNP
rs963563124 2994 dbSNP
rs1447008484 2996 dbSNP
rs993713100 2998 dbSNP
rs1462319770 3007 dbSNP
rs1381192794 3008 dbSNP
rs1212913653 3009 dbSNP
rs908736562 3010 dbSNP
rs1026418090 3013 dbSNP
rs954888727 3024 dbSNP
rs1252886422 3030 dbSNP
rs1206833763 3034 dbSNP
rs144672228 3036 dbSNP
rs373857960 3037 dbSNP
rs1207630368 3038 dbSNP
rs1278449465 3043 dbSNP
rs1485550509 3060 dbSNP
rs1307677744 3067 dbSNP
rs751457776 3075 dbSNP
rs976889641 3079 dbSNP
rs921357552 3082 dbSNP
rs1239749391 3083 dbSNP
rs964175494 3086 dbSNP
rs1300287658 3087 dbSNP
rs975099939 3089 dbSNP
rs1456006347 3093 dbSNP
rs1364570025 3103 dbSNP
rs559007668 3106 dbSNP
rs932713246 3107 dbSNP
rs772686900 3110 dbSNP
rs1445903131 3111 dbSNP
rs1043489163 3124 dbSNP
rs1377992553 3127 dbSNP
rs1474692521 3127 dbSNP
rs1243758410 3138 dbSNP
rs1419625705 3143 dbSNP
rs1189252815 3151 dbSNP
rs1490143616 3157 dbSNP
rs1186415786 3163 dbSNP
rs1223564707 3167 dbSNP
rs936536311 3180 dbSNP
rs1284006498 3181 dbSNP
rs1389070668 3195 dbSNP
rs1238895341 3200 dbSNP
rs1336880564 3203 dbSNP
rs988068208 3210 dbSNP
rs1449533768 3214 dbSNP
rs904514103 3216 dbSNP
rs1345334925 3218 dbSNP
rs1303352036 3223 dbSNP
rs1373172903 3226 dbSNP
rs934607281 3233 dbSNP
rs1052947343 3242 dbSNP
rs1046698539 3243 dbSNP
rs1365458398 3247 dbSNP
rs1196741624 3262 dbSNP
rs1360650930 3262 dbSNP
rs1269383667 3265 dbSNP
rs1200353004 3273 dbSNP
rs575859405 3274 dbSNP
rs1490907325 3291 dbSNP
rs1259671890 3292 dbSNP
rs1428607228 3297 dbSNP
rs1351573174 3299 dbSNP
rs1231761742 3300 dbSNP
rs1262997277 3300 dbSNP
rs1323232588 3302 dbSNP
rs2705730 3305 dbSNP
rs1406334089 3306 dbSNP
rs938102058 3314 dbSNP
rs1317279807 3327 dbSNP
rs555028346 3328 dbSNP
rs1386561101 3351 dbSNP
rs766906722 3356 dbSNP
rs550462681 3357 dbSNP
rs1230613746 3361 dbSNP
rs1429666827 3367 dbSNP
rs1178335533 3382 dbSNP
rs574885714 3383 dbSNP
rs1014053426 3385 dbSNP
rs199916097 3392 dbSNP
rs1371545660 3393 dbSNP
rs1447627514 3393 dbSNP
rs1491279223 3393 dbSNP
rs34335944 3393 dbSNP
rs397778401 3393 dbSNP
rs571807058 3393 dbSNP
rs1301536879 3394 dbSNP
rs1022762845 3400 dbSNP
rs1202278396 3401 dbSNP
rs1461275000 3404 dbSNP
rs1264070968 3410 dbSNP
rs1225732369 3412 dbSNP
rs74888232 3415 dbSNP
rs994590613 3416 dbSNP
rs1027763926 3417 dbSNP
rs950398469 3418 dbSNP
rs189542945 3426 dbSNP
rs1331647363 3430 dbSNP
rs760104369 3431 dbSNP
rs765456158 3437 dbSNP
rs1338691637 3443 dbSNP
rs560532628 3444 dbSNP
rs532352909 3447 dbSNP
rs545951562 3457 dbSNP
rs562658231 3468 dbSNP
rs1395561852 3471 dbSNP
rs965585389 3477 dbSNP
rs1189873414 3479 dbSNP
rs1374807367 3482 dbSNP
rs1018225935 3488 dbSNP
rs753147017 3489 dbSNP
rs1444159726 3491 dbSNP
rs1244274777 3509 dbSNP
rs1206175943 3512 dbSNP
rs763222811 3515 dbSNP
rs921441289 3525 dbSNP
rs932762507 3527 dbSNP
rs1341050338 3529 dbSNP
rs1312191003 3538 dbSNP
rs1244594455 3539 dbSNP
rs1172776841 3540 dbSNP
rs1427073035 3557 dbSNP
rs1317040548 3562 dbSNP
rs531666400 3563 dbSNP
rs548166628 3574 dbSNP
rs1319811272 3576 dbSNP
rs369114133 3579 dbSNP
rs957677225 3584 dbSNP
rs1437389823 3588 dbSNP
rs550779831 3590 dbSNP
rs1161968213 3595 dbSNP
rs1323932113 3597 dbSNP
rs934678202 3598 dbSNP
rs17704934 3602 dbSNP
rs1234307341 3608 dbSNP
rs527250991 3609 dbSNP
rs1185923451 3610 dbSNP
rs1276818864 3611 dbSNP
rs1232603204 3614 dbSNP
rs1182987074 3617 dbSNP
rs1439984258 3626 dbSNP
rs1289120002 3628 dbSNP
rs1349069944 3640 dbSNP
rs751655443 3644 dbSNP
rs949929283 3653 dbSNP
rs1221949637 3654 dbSNP
rs547092005 3661 dbSNP
rs1044656119 3663 dbSNP
rs1444096599 3664 dbSNP
rs1269337548 3672 dbSNP
rs1466600601 3673 dbSNP
rs1212331818 3679 dbSNP
rs1264714825 3681 dbSNP
rs72890384 3682 dbSNP
rs1399391500 3693 dbSNP
rs556310820 3704 dbSNP
rs1159709132 3711 dbSNP
rs938085381 3715 dbSNP
rs559137336 3718 dbSNP
rs1248024688 3719 dbSNP
rs1468419001 3722 dbSNP
rs1490416655 3724 dbSNP
rs1158077029 3725 dbSNP
rs569328416 3727 dbSNP
rs577359963 3732 dbSNP
rs1037764131 3733 dbSNP
rs1213032037 3737 dbSNP
rs1315874123 3751 dbSNP
rs1284844901 3767 dbSNP
rs538578713 3771 dbSNP
rs35905370 3775 dbSNP
rs1321095790 3780 dbSNP
rs1412655865 3782 dbSNP
rs2944346 3784 dbSNP
rs1162679207 3786 dbSNP
rs1390186267 3790 dbSNP
rs1295577188 3796 dbSNP
rs754947187 3797 dbSNP
rs1004559411 3799 dbSNP
rs1018583814 3810 dbSNP
rs1344733538 3815 dbSNP
rs1319513771 3827 dbSNP
rs1459306020 3832 dbSNP
rs1047760748 3833 dbSNP
rs965659530 3838 dbSNP
rs1430962464 3848 dbSNP
rs1481009119 3848 dbSNP
rs998428931 3852 dbSNP
rs1485240226 3853 dbSNP
rs769417030 3862 dbSNP
rs574897772 3864 dbSNP
rs1217795996 3867 dbSNP
rs1325781963 3868 dbSNP
rs1262201424 3879 dbSNP
rs1223891400 3884 dbSNP
rs778638453 3885 dbSNP
rs566946992 3889 dbSNP
rs2705729 3893 dbSNP
rs1289333979 3905 dbSNP
rs1361303422 3906 dbSNP
rs1009573905 3909 dbSNP
rs1232060877 3911 dbSNP
rs544702552 3912 dbSNP
rs1265364906 3929 dbSNP
rs1319242964 3934 dbSNP
rs1470496611 3935 dbSNP
rs1361305731 3936 dbSNP
rs1355042993 3941 dbSNP
rs956088194 3943 dbSNP
rs988773096 3950 dbSNP
rs577233468 3953 dbSNP
rs1481843711 3960 dbSNP
rs1180970882 3962 dbSNP
rs150880454 3963 dbSNP
rs1473444845 3973 dbSNP
rs1185419266 3977 dbSNP
rs1367756355 3978 dbSNP
rs900688522 3984 dbSNP
rs1462461293 3997 dbSNP
rs1044303758 4002 dbSNP
rs1202626355 4013 dbSNP
rs554769331 4016 dbSNP
rs1000391708 4026 dbSNP
rs1230687735 4027 dbSNP
rs1380742843 4029 dbSNP
rs1032074011 4034 dbSNP
rs1165027703 4051 dbSNP
rs957811999 4060 dbSNP
rs930509684 4065 dbSNP
rs562731252 4066 dbSNP
rs777470161 4069 dbSNP
rs886192595 4070 dbSNP
rs1004632862 4071 dbSNP
rs531395572 4072 dbSNP
rs1184077877 4074 dbSNP
rs1425501094 4076 dbSNP
rs542117102 4081 dbSNP
rs1040097833 4083 dbSNP
rs1480871968 4086 dbSNP
rs1312648915 4090 dbSNP
rs1341540183 4093 dbSNP
rs561601127 4095 dbSNP
rs901495195 4097 dbSNP
rs527310626 4098 dbSNP
rs1357324840 4103 dbSNP
rs1339425387 4110 dbSNP
rs998867430 4114 dbSNP
rs1274908588 4115 dbSNP
rs1483917924 4117 dbSNP
rs1324031042 4124 dbSNP
rs1198457782 4141 dbSNP
rs1391165976 4146 dbSNP
rs1028592048 4162 dbSNP
rs546952031 4173 dbSNP
rs926448229 4184 dbSNP
rs1000375440 4185 dbSNP
rs1364346876 4190 dbSNP
rs959454869 4195 dbSNP
rs1033099744 4196 dbSNP
rs759477868 4197 dbSNP
rs570095815 4206 dbSNP
rs1253751300 4211 dbSNP
rs1184557389 4215 dbSNP
rs956161983 4220 dbSNP
rs768076271 4231 dbSNP
rs1210499637 4232 dbSNP
rs1047687664 4245 dbSNP
rs1259463525 4250 dbSNP
rs1239007180 4252 dbSNP
rs1317853726 4256 dbSNP
rs1448932813 4260 dbSNP
rs911885360 4262 dbSNP
rs533073899 4265 dbSNP
rs1169470814 4266 dbSNP
rs549604683 4267 dbSNP
rs1303441618 4273 dbSNP
rs980484609 4276 dbSNP
rs535483682 4288 dbSNP
rs1288177763 4289 dbSNP
rs555704387 4289 dbSNP
rs1454270204 4290 dbSNP
rs538017899 4293 dbSNP
rs1000360660 4311 dbSNP
rs1480023459 4326 dbSNP
rs1428839126 4327 dbSNP
rs1294049209 4333 dbSNP
rs1453370375 4334 dbSNP
rs1159677310 4335 dbSNP
rs1205007427 4335 dbSNP
rs1259778300 4335 dbSNP
rs1491271683 4335 dbSNP
rs60200895 4335 dbSNP
rs796896319 4335 dbSNP
rs1491189923 4336 dbSNP
rs930517593 4344 dbSNP
rs1048926544 4345 dbSNP
rs1323337823 4348 dbSNP
rs907703088 4348 dbSNP
rs1283494741 4351 dbSNP
rs940450009 4351 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067870. RNA binding protein: AGO2. Condition:Ago2 IP-seq (mitotic cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  :||||||| 
Target 5' acUGCAACCUCUGCCUCCCAg 3'
1 - 21
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760630. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  :||||||| 
Target 5' acUGCAACCUCUGCCUCCCAg 3'
15 - 35
Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1067870
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (mitotic cells)
Location of target site ENST00000354221.4 | 3UTR | ACUGCAACCUCUGCCUCCCAGCUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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