pre-miRNA Information
pre-miRNA hsa-mir-3192   
Genomic Coordinates chr20: 18470615 - 18470691
Description Homo sapiens miR-3192 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3192-5p
Sequence 10| UCUGGGAGGUUGUAGCAGUGGAA |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs906254403 3 dbSNP
rs554130490 4 dbSNP
rs773140898 6 dbSNP
rs376614009 11 dbSNP
rs899297329 12 dbSNP
rs1330418015 18 dbSNP
rs1402597660 21 dbSNP
rs995052311 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol DUSP19   
Synonyms DUSP17, LMWDSP3, SKRP1, TS-DSP1
Description dual specificity phosphatase 19
Transcript NM_001142314   
Other Transcripts NM_080876   
Expression
Putative miRNA Targets on DUSP19
3'UTR of DUSP19
(miRNA target sites are highlighted)
>DUSP19|NM_001142314|3'UTR
   1 GTTGCATTGTAGCAGACAATGGACAACTGTAGTTTCTGAATTGACTTCTATAGCCATCTTTTCCCTTTTTTGGAGAGTAG
  81 ACTAGCAAAACTCCCTTTTTTCTCTTGCCTTTTTTATGCATAAATGGAGGTCAATTTGATTGTCCTGACCTACTGTATAA
 161 GTAAATTTCAAATGTCATTACTTTCTCTTTGTTATTATAATGTGTGATTAAATGCTTTTTTAAATTGCTAAGGGAAAATA
 241 ACAAAGTGTTAGTAATCATTGCTTTCTGTAGAAGAAAAAGGTTTAAATTTAAAATGTGTATTTAGAGCATGGAGAGAATC
 321 ATTTAATGAAGCCTATTTTTCTGTTCCAGCAACTGTTTTTATGAAAGAAAAACTTGAAATGCTACTTAACTTACTATTTC
 401 AAAGGGAAGTATATTTCTTTTTAAAGAATCTTTTTAAGATTAAAAATGAATACCTTAAATCTCCCAAAAGAGATAACCAG
 481 TATCTGAAGGTTTATACAATATTTACACAGTGGCTACAATATTCACAAAATTCTTATGTTCTCTTATGAAAAATATACAC
 561 TTTTCATTTTGTCTTCTTCTTTTTTTTTCTTTTTTTAGATGGAGTTTGGCTCTTGTCACCCAGGCTGGAGTGCAATGGCG
 641 CAATCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCCCAGCCTCCCATATAGCTGGGATTATA
 721 GGTGCCTGCCACCATGCCCAGCTAATTTTTGTGTTTTTAGTAGAGATGGAGTCTCACCACATAGGCCAGGCAGTCTCGAA
 801 CTCCTGACCTCAGGTGATCCACCCACCTTGGCCTCTCTAAATACTGGGATTACAGGCGTGAGCCACTGCATCCGACCTCA
 881 TTTTGTTTTTTTCAATTCTGTTATCGGCATTTCTTTCTTTTTTTTTTTAATGTATAGGTGTTCTGTCATACGTTATTGTG
 961 AGCTTTGGTTCTTTGAACAGGTGATCTATTCTCTTACATTTTGTGCTTTTTATCTTGGGTGCCTAGCATTCTGTTTTTTT
1041 GATCCTATGTCATAATTTTTTGAGAAAATGTTTGATACTGCAAGATCATTGTTTAGTGGTCTGTTTTCTACTTCAGTATT
1121 CTACCAGAGAACATATTTTTTAGGGGAGAAGGGTTATGGTTTTGTAAGAAACTTTAAATATACTTTTAGGAGACCCACAA
1201 TCATTTACAGTTTTATCTTTGGCCTTTGAATAGGTTCTTTTTTCTTTAATGTCTCCGTATTTGAAGAACTGAGCTCTGTA
1281 CATTATAAATTTGCTTAAAGATTTTGATTTTTTCTTCAGAATATGGTATACTTAAAATTAATTAATTAAGACAGTTTCTT
1361 TTTTCTTTTCTTTTTTTTTTTTTTCGAGACAGGGTCTTGCTCTGTCACCTAGGCTAGAGTGGAGTGGCATGAACACAACG
1441 CACTGCAGCCTCTACCTCCTGGGCTCAAGCAGTCCTCCCACCTCAGTCTCCTGAGTAGCTGAGACTACAGCTGTGCGCCA
1521 CCACATCTGGCTAATTTTATTTTTATTTTTGTAGAGACAGGAGTCTTGCCATGTTGCCCAGGCTGATCTCAAACTCCTAG
1601 GCTTAAGTGATCCTCCCGCCTTAGCCTCCCAAGTGCTAGGATTACAGGCATCAGCCACCACGCCTGGCCTGATAGTTTCC
1681 ACATAGTTTTTCATGACTTAGAAGATATCATTGCCATGTAGGTTTTATTTTTAAAAGTCTTGAGCTCTTCTTAAATATAC
1761 ATTATAAAGAGCAAGCATAGATGGAAAGTGCATATTGAACACATCTGTGCATTTGAGAAGGCAGGCTTTCATATGCTGTC
1841 ATGAGCAAAAAGTAGAAGTGATAAATGCAAGTTATGTTTTGAGATTGCTTACACCGTGACAAGATGCCATCACTTGTGAT
1921 GTTATGAACTGTTATAAACTCTTTGCTTCTGCTAAGAAGCAGTCTAAATATAATCAACGTACAGTGAGCTCTTTGAAGCC
2001 AACCAAGGCAGGCAGAACCCTCTTAAATATGAGACTGATGTATAGGTTCTCTCTATGGTCAGTATCACTGGATAAGCCTT
2081 CTCCTTTCATAAGAAAGGATGTATTTAAATACATTTTATTTTGCTAAATCCTGTTTAGTTTTCAGCCATTAAATGTCACA
2161 TGAAGCCTTGATAGAATTTGTTCATAATGGCTCATGTATTATTATTATTTTTGAGATGGAGTTTTGCTCTTAATGATATT
2241 ATTATTATTTGAGACAGAGTTTTGCTCTTATTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTG
2321 CCTCCCAGCTTCAAGCGATTCTCCTGTATCAGCCTCCCAAGTAGCTGGGATTATAGGCATGTGCCACCATGCCCAGCAAA
2401 TTTTGTATTTTTTTTTGGTAGAGACAGGGTTCAACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCGCAAGTGATCCA
2481 CACGCCTTGGTCTCCCAAAGTGCTGGGATTACGGTGTTAGCCACTACACCTGGCCTGGATTGTGTATTATTTATGTCTGT
2561 AGTTTATATGCTTAGTTGTTGCCTATAGTGATCTGGGTAAGATTCAAACATTTATCTTTTGTATCTTCTACAGAAGTGCT
2641 TTGAGCATCAAATTTGTTTTAACGTTAAATTGTAGTTTGCTGTATTAAAATAGATCAATGAATATAATTCAGTCTTTTAG
2721 GGGCACCAAGTAAAGCATAAGGTCATATATACTATACAATATGTTTATTGCACTTCCCATGGGGATAAATCACTCTGTCA
2801 TTCCTAGTTATTTTAAAAAAAGAACTTTATGATTACGGTCCTCTTTCTCACATACTGCAAACTTAAAAGATACATACACC
2881 AAATATAGGTCTGTTTTAAAGGAGAGGAAAAATAGTTCAAGGAGTTTTTGCCTCTTTGTTTTTCAATAGATTATTCTGCC
2961 ATTTTTTAAAGGAAAGGGAAAATGAAAACAGCATGTCTTTTTAAACATTGAAAAGAAATATGGAGGCTTTAAACCGCAAA
3041 CTGAAAAAGCTGAGTAGAACAAAGGCAGTGGAGCATACAATACAATTCTATTTATTTGAGGTTAATTGAAGTTAATAATT
3121 TTTAAATTTTTTTCTAATTTTATGCCTTAAAATAGGTTTCTGATTACATAAAATTTGAATAGAACACTCAAGAAGTATGT
3201 AGATTTTTGAAAAACCCAAACAATATTCTTCTTAGATTTTTGGAGGCAAAATTTAGACCAGTATACTAATTCAAAAGACA
3281 AATATTTCAGAGGAAGTGGAGTACAGTATTTAACATTTTGTTTGCAATTTTACTTTTTCTTCCCTTCTTCCCTATTGAAC
3361 CTTGATTAAAATGTATGAATACAATACTTGGATTTTTTTTTTTCAGCTTAGACTCTGATAATTTCAGTGGTAGTGGGGAA
3441 ACCTGAATTTGTCAGCATGATTATTTGTAACTCAGATTGTTCAAATGTATATAGAAGGTCCCCTTCAAGTGTTGTTTCTC
3521 CAAGTAGTCATAAATGTAGCAAGTATAAATCAGAATATCATCTTATAATCTTACAGAGTTAACCTAATGAGTCAATACCT
3601 TTATAAGCAAAACCATGATAAATTTAAAAACAACAGAAATGTGGCATGATTACTTATTTATTTGTTCCAGGTGACTCTAA
3681 ATAGTTGATTTTTCTGCCTGAAGGATCCTGAACATATTTAGTTACCCTGTAGTTATTTAGGAATTTAAACCAGAAGACTT
3761 TGAAGTTGTATATTCTTGCAATGCATAAAATGACATTATAATCAACAAACTTATGGTTTGTTTCAATTGATGCACACAAA
3841 AAATAACTTATAGTTAGACTTTTCTATTTCAAGTAAAGCTTTGAGTTACTTGTTTTTATACATATTCATCATGTACCCTT
3921 TATTGTTTCTAGGTGTTGATATACTTTAATAAAAATGATATGTTTAATATTTTCCCATTAATATATTTCTTTGAAGCTAT
4001 TTGTTTTAAAAGATGTAACACTTATTTGCTGTCAAATTCTGAATTAAAAAATCTGTTGGTGGCCAGGCGCAGTGGCTCAT
4081 GCCTGTAATCCCAACATTTTGGGAGGCCAAGGAGATGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTGGCCAACATG
4161 GCAAAACCCCATCACTAAAAATACAAAAATTACCCGGGCATGGTGGTGGGTGCCTGTAATCCCAGCTTCTTAGGAGGCTG
4241 AGGTAGGAGAATTGCTTGACCCTGGGAGGTGGAGGTGGCAGTGAGCCGAGATAGCACCACTGCACTTCTAGTTGACAGAG
4321 TGAGACTCTGACTCAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aaGGUGACGAU---GUUGGAGGGUCu 5'
            :|||||| |   | :|||||||| 
Target 5' gcTCACTGCAACCTCTGCCTCCCAGc 3'
2304 - 2329 169.00 -26.40
2
miRNA  3' aaGGUGACGAUGUUGGAGGGUcu 5'
            |: ||||  ||:|||||||  
Target 5' ttCTCCTGCCCCAGCCTCCCAta 3'
684 - 706 153.00 -23.70
3
miRNA  3' aaGGUGACGAU---GUUGGAGGGUCu 5'
            :|||||| |   | :||||||:| 
Target 5' gcTCACTGCAACCTCTGCCTCCCGGg 3'
649 - 674 153.00 -27.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30473958 64 COSMIC
COSN17426167 92 COSMIC
COSN19671416 137 COSMIC
COSN6157572 138 COSMIC
COSN30109099 178 COSMIC
COSN30121788 180 COSMIC
COSN29924831 369 COSMIC
COSN1810504 409 COSMIC
COSN26078869 580 COSMIC
COSN32061245 580 COSMIC
COSN27023952 624 COSMIC
COSN20097476 893 COSMIC
COSN20097478 929 COSMIC
COSN4799676 1051 COSMIC
COSN22855390 1062 COSMIC
COSN31520901 1337 COSMIC
COSN6157573 1542 COSMIC
COSN15021663 1781 COSMIC
COSN5785759 2137 COSMIC
COSN27879387 2215 COSMIC
COSN16902988 2545 COSMIC
COSN1810505 2647 COSMIC
COSN23686416 2664 COSMIC
COSN20617699 2838 COSMIC
COSN27149323 3066 COSMIC
COSN21126892 3194 COSMIC
COSN29511456 3195 COSMIC
COSN20097484 3403 COSMIC
COSN24138905 3521 COSMIC
COSN20090685 3704 COSMIC
COSN27774133 3855 COSMIC
COSN20090686 4028 COSMIC
COSN26357305 4069 COSMIC
COSN16002194 4091 COSMIC
COSN7150246 4167 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1476596844 3 dbSNP
rs1401029792 7 dbSNP
rs1239659406 9 dbSNP
rs1336496927 10 dbSNP
rs780501461 13 dbSNP
rs373510412 20 dbSNP
rs377469252 23 dbSNP
rs1438726556 25 dbSNP
rs1370559383 27 dbSNP
rs1161362891 29 dbSNP
rs573841927 31 dbSNP
rs748381584 32 dbSNP
rs1407476946 38 dbSNP
rs757529411 41 dbSNP
rs1362698233 42 dbSNP
rs770023394 43 dbSNP
rs1053934097 45 dbSNP
rs1295029129 46 dbSNP
rs1341107699 51 dbSNP
rs1383231395 65 dbSNP
rs199585473 71 dbSNP
rs954256479 74 dbSNP
rs915322991 81 dbSNP
rs770484426 83 dbSNP
rs945445298 85 dbSNP
rs35941903 92 dbSNP
rs1453219889 96 dbSNP
rs1200513557 102 dbSNP
rs1253277093 102 dbSNP
rs1397246816 103 dbSNP
rs1438007434 105 dbSNP
rs1445118646 106 dbSNP
rs1277218591 108 dbSNP
rs1372192991 109 dbSNP
rs1224030989 110 dbSNP
rs906538498 116 dbSNP
rs1205430513 119 dbSNP
rs1355779040 121 dbSNP
rs939302677 124 dbSNP
rs769657935 132 dbSNP
rs13399265 137 dbSNP
rs1332482937 154 dbSNP
rs371765838 158 dbSNP
rs1304507257 165 dbSNP
rs977075484 174 dbSNP
rs553032042 177 dbSNP
rs1325122733 181 dbSNP
rs924279489 188 dbSNP
rs183355256 206 dbSNP
rs1005812893 216 dbSNP
rs915699134 218 dbSNP
rs1395142346 222 dbSNP
rs545163324 223 dbSNP
rs564931675 230 dbSNP
rs772440563 240 dbSNP
rs1489125278 243 dbSNP
rs888538081 243 dbSNP
rs1360891017 247 dbSNP
rs1255369274 267 dbSNP
rs533572435 270 dbSNP
rs1210042740 275 dbSNP
rs1480989047 297 dbSNP
rs1485418160 299 dbSNP
rs1279419845 311 dbSNP
rs544108446 317 dbSNP
rs564028310 320 dbSNP
rs1269776954 321 dbSNP
rs371465234 328 dbSNP
rs531506014 329 dbSNP
rs1311648722 333 dbSNP
rs998372261 334 dbSNP
rs1414696757 339 dbSNP
rs1028588933 347 dbSNP
rs112595479 359 dbSNP
rs987745017 362 dbSNP
rs1017887871 364 dbSNP
rs1011070571 371 dbSNP
rs1022917850 382 dbSNP
rs1328732043 391 dbSNP
rs537259255 402 dbSNP
rs771860418 410 dbSNP
rs1353460713 412 dbSNP
rs968460940 414 dbSNP
rs964928816 421 dbSNP
rs990062515 429 dbSNP
rs1239071645 436 dbSNP
rs915371459 455 dbSNP
rs1436116739 456 dbSNP
rs1272619670 461 dbSNP
rs1442278394 475 dbSNP
rs945490029 490 dbSNP
rs1291824754 491 dbSNP
rs978190991 496 dbSNP
rs1031317804 498 dbSNP
rs959705621 511 dbSNP
rs1439441880 514 dbSNP
rs1223223202 518 dbSNP
rs1353391122 523 dbSNP
rs1331689419 527 dbSNP
rs1466858904 532 dbSNP
rs1391745848 534 dbSNP
rs1163967093 538 dbSNP
rs1461726432 539 dbSNP
rs1415915164 542 dbSNP
rs992521632 556 dbSNP
rs376955456 557 dbSNP
rs939374671 567 dbSNP
rs1179572702 572 dbSNP
rs1358164279 574 dbSNP
rs528459718 575 dbSNP
rs1271449334 578 dbSNP
rs1222549010 580 dbSNP
rs201951308 580 dbSNP
rs948685386 580 dbSNP
rs1309358680 582 dbSNP
rs1368361744 583 dbSNP
rs551469779 583 dbSNP
rs941250149 584 dbSNP
rs1272189087 586 dbSNP
rs1308224746 588 dbSNP
rs200555012 589 dbSNP
rs7603240 590 dbSNP
rs1485441932 592 dbSNP
rs1189139821 593 dbSNP
rs1260099185 595 dbSNP
rs1156911886 598 dbSNP
rs1474616441 599 dbSNP
rs537272751 600 dbSNP
rs1159347165 601 dbSNP
rs1167902924 601 dbSNP
rs1420840263 604 dbSNP
rs1441574964 613 dbSNP
rs1410044269 617 dbSNP
rs961072587 619 dbSNP
rs940071186 627 dbSNP
rs1038650364 633 dbSNP
rs556910851 636 dbSNP
rs567432269 640 dbSNP
rs1214007753 641 dbSNP
rs1287306590 644 dbSNP
rs1029399551 648 dbSNP
rs933982501 650 dbSNP
rs1302303351 654 dbSNP
rs1386980748 657 dbSNP
rs1313088544 660 dbSNP
rs1342103426 662 dbSNP
rs890855645 664 dbSNP
rs1006573312 672 dbSNP
rs1361121009 674 dbSNP
rs1017919312 682 dbSNP
rs762622217 683 dbSNP
rs989744143 688 dbSNP
rs890034781 691 dbSNP
rs10200193 694 dbSNP
rs1185166750 700 dbSNP
rs1347208221 702 dbSNP
rs1211920664 705 dbSNP
rs1280977486 707 dbSNP
rs1219409906 720 dbSNP
rs1445700284 724 dbSNP
rs751055154 728 dbSNP
rs966888711 730 dbSNP
rs1233260237 738 dbSNP
rs570635196 741 dbSNP
rs1243211308 744 dbSNP
rs1476646691 745 dbSNP
rs1292943253 752 dbSNP
rs1189974579 759 dbSNP
rs978644481 761 dbSNP
rs928068145 762 dbSNP
rs902701116 767 dbSNP
rs1374705185 768 dbSNP
rs1302348390 771 dbSNP
rs1466572753 773 dbSNP
rs1361147855 774 dbSNP
rs553293779 780 dbSNP
rs1477727842 783 dbSNP
rs998576102 792 dbSNP
rs1031411055 794 dbSNP
rs572884879 798 dbSNP
rs959799649 799 dbSNP
rs992505834 804 dbSNP
rs761350712 810 dbSNP
rs768005961 813 dbSNP
rs544972261 816 dbSNP
rs1023088242 817 dbSNP
rs1249306755 818 dbSNP
rs969966900 821 dbSNP
rs1317315791 827 dbSNP
rs558705747 830 dbSNP
rs1326991662 834 dbSNP
rs1318415869 836 dbSNP
rs984447603 839 dbSNP
rs909695067 842 dbSNP
rs916579615 845 dbSNP
rs1396719096 853 dbSNP
rs1437243486 858 dbSNP
rs575211955 859 dbSNP
rs941310249 865 dbSNP
rs1038277981 868 dbSNP
rs918439877 874 dbSNP
rs922685045 875 dbSNP
rs544282125 878 dbSNP
rs1368433088 879 dbSNP
rs139694174 886 dbSNP
rs1049712626 889 dbSNP
rs1276831232 891 dbSNP
rs889784864 896 dbSNP
rs929843941 900 dbSNP
rs563759927 906 dbSNP
rs1285342311 907 dbSNP
rs1304967120 918 dbSNP
rs55951106 918 dbSNP
rs902795814 920 dbSNP
rs999675043 921 dbSNP
rs1212432795 929 dbSNP
rs397792703 929 dbSNP
rs200646305 930 dbSNP
rs1056686866 931 dbSNP
rs1252917634 931 dbSNP
rs1453274878 932 dbSNP
rs1193652466 933 dbSNP
rs1379031784 935 dbSNP
rs1468250223 939 dbSNP
rs895561347 945 dbSNP
rs1014428584 952 dbSNP
rs750985938 953 dbSNP
rs890886546 977 dbSNP
rs1385469187 980 dbSNP
rs529489856 989 dbSNP
rs1267789728 994 dbSNP
rs562560279 996 dbSNP
rs970149098 998 dbSNP
rs1285164637 1006 dbSNP
rs1323881182 1011 dbSNP
rs1005440935 1020 dbSNP
rs892794207 1022 dbSNP
rs1232363041 1024 dbSNP
rs188189598 1026 dbSNP
rs1324630900 1029 dbSNP
rs1383477259 1034 dbSNP
rs756626132 1046 dbSNP
rs1298092795 1074 dbSNP
rs1419832385 1078 dbSNP
rs1381613468 1089 dbSNP
rs1171443177 1090 dbSNP
rs1016796486 1091 dbSNP
rs1377788350 1092 dbSNP
rs528471932 1095 dbSNP
rs1200767702 1113 dbSNP
rs1303436576 1114 dbSNP
rs1217226333 1116 dbSNP
rs796250253 1139 dbSNP
rs1334232909 1141 dbSNP
rs1022525254 1145 dbSNP
rs967337594 1152 dbSNP
rs999659113 1154 dbSNP
rs1344607235 1159 dbSNP
rs1275620789 1161 dbSNP
rs201935643 1176 dbSNP
rs1231774163 1183 dbSNP
rs1273125184 1193 dbSNP
rs573186521 1195 dbSNP
rs571600087 1196 dbSNP
rs1362936205 1197 dbSNP
rs1310560193 1199 dbSNP
rs1209947310 1203 dbSNP
rs990857581 1204 dbSNP
rs879163120 1205 dbSNP
rs1173941907 1207 dbSNP
rs1402515180 1207 dbSNP
rs34475351 1212 dbSNP
rs1474335172 1217 dbSNP
rs916598876 1219 dbSNP
rs1194029492 1221 dbSNP
rs1478769300 1223 dbSNP
rs1255257279 1239 dbSNP
rs1208148438 1242 dbSNP
rs770148384 1248 dbSNP
rs985965003 1250 dbSNP
rs192136678 1251 dbSNP
rs1202382317 1256 dbSNP
rs755206837 1257 dbSNP
rs918523975 1258 dbSNP
rs2675069 1265 dbSNP
rs1446707500 1266 dbSNP
rs1473451618 1280 dbSNP
rs1340531924 1282 dbSNP
rs2368335 1283 dbSNP
rs1399020283 1286 dbSNP
rs1171151957 1287 dbSNP
rs1417106037 1289 dbSNP
rs1415632768 1308 dbSNP
rs536408631 1308 dbSNP
rs912396243 1309 dbSNP
rs942459772 1322 dbSNP
rs1472542910 1323 dbSNP
rs758612082 1324 dbSNP
rs1056612327 1325 dbSNP
rs1039456380 1329 dbSNP
rs763257807 1332 dbSNP
rs892815127 1332 dbSNP
rs1237748168 1333 dbSNP
rs1456623596 1333 dbSNP
rs896660063 1336 dbSNP
rs1013981891 1338 dbSNP
rs1288415370 1340 dbSNP
rs1044552607 1342 dbSNP
rs905642546 1347 dbSNP
rs1011256970 1349 dbSNP
rs371279686 1352 dbSNP
rs1390888912 1353 dbSNP
rs1329796752 1354 dbSNP
rs1331568682 1359 dbSNP
rs902767947 1359 dbSNP
rs1016596792 1361 dbSNP
rs1164080586 1366 dbSNP
rs979921685 1366 dbSNP
rs1405889061 1370 dbSNP
rs1415805267 1370 dbSNP
rs1168100978 1371 dbSNP
rs1437865281 1371 dbSNP
rs34201127 1371 dbSNP
rs548999532 1371 dbSNP
rs764293383 1371 dbSNP
rs999732476 1375 dbSNP
rs1352498918 1377 dbSNP
rs1221217927 1385 dbSNP
rs1245346349 1385 dbSNP
rs765595639 1385 dbSNP
rs1413349219 1386 dbSNP
rs1237372730 1387 dbSNP
rs1309606740 1395 dbSNP
rs1241864769 1408 dbSNP
rs1364971252 1411 dbSNP
rs1292745622 1416 dbSNP
rs6759305 1418 dbSNP
rs1436874255 1419 dbSNP
rs553306019 1440 dbSNP
rs1035185675 1441 dbSNP
rs1379926689 1443 dbSNP
rs1159553008 1446 dbSNP
rs1441611591 1447 dbSNP
rs1423216176 1451 dbSNP
rs1191094820 1452 dbSNP
rs1247692556 1463 dbSNP
rs1248772089 1475 dbSNP
rs1470645822 1478 dbSNP
rs994046374 1482 dbSNP
rs566742364 1483 dbSNP
rs960848723 1506 dbSNP
rs1029425415 1509 dbSNP
rs1286279576 1516 dbSNP
rs150141445 1517 dbSNP
rs745737895 1518 dbSNP
rs985338404 1520 dbSNP
rs963088723 1523 dbSNP
rs974109178 1525 dbSNP
rs911278507 1538 dbSNP
rs4363996 1555 dbSNP
rs1369663408 1560 dbSNP
rs1194666660 1572 dbSNP
rs968199812 1573 dbSNP
rs1360997771 1580 dbSNP
rs1455579238 1583 dbSNP
rs1357462282 1588 dbSNP
rs1175481188 1593 dbSNP
rs1434204021 1598 dbSNP
rs1432090112 1606 dbSNP
rs918542492 1611 dbSNP
rs1483803291 1613 dbSNP
rs558306157 1618 dbSNP
rs183208873 1619 dbSNP
rs1264405944 1622 dbSNP
rs935530897 1626 dbSNP
rs1256590918 1627 dbSNP
rs912427555 1635 dbSNP
rs942489603 1639 dbSNP
rs370148048 1646 dbSNP
rs975218394 1656 dbSNP
rs1210219267 1658 dbSNP
rs1313513004 1661 dbSNP
rs751562380 1662 dbSNP
rs138566038 1663 dbSNP
rs1368881438 1670 dbSNP
rs1041423808 1674 dbSNP
rs902842217 1675 dbSNP
rs1384089858 1681 dbSNP
rs935615039 1684 dbSNP
rs879409049 1685 dbSNP
rs775302453 1686 dbSNP
rs948208761 1690 dbSNP
rs1408462298 1700 dbSNP
rs76899775 1705 dbSNP
rs1465596460 1706 dbSNP
rs1045262544 1711 dbSNP
rs575563059 1717 dbSNP
rs1173015219 1718 dbSNP
rs574162975 1719 dbSNP
rs1255050249 1723 dbSNP
rs542768101 1728 dbSNP
rs758280674 1733 dbSNP
rs896842674 1738 dbSNP
rs1294061892 1761 dbSNP
rs1326293580 1771 dbSNP
rs898582280 1777 dbSNP
rs144587429 1778 dbSNP
rs1320963672 1783 dbSNP
rs1312262363 1812 dbSNP
rs891067749 1822 dbSNP
rs573167493 1832 dbSNP
rs1329428299 1834 dbSNP
rs1007132480 1835 dbSNP
rs1401675044 1846 dbSNP
rs1169938680 1851 dbSNP
rs1456706359 1852 dbSNP
rs148055228 1859 dbSNP
rs1018140567 1862 dbSNP
rs1446117126 1868 dbSNP
rs1377896506 1881 dbSNP
rs1426829011 1896 dbSNP
rs749081709 1897 dbSNP
rs951346582 1898 dbSNP
rs1208341365 1910 dbSNP
rs979514632 1914 dbSNP
rs565180371 1915 dbSNP
rs1324567020 1925 dbSNP
rs768319951 1926 dbSNP
rs544440383 1930 dbSNP
rs1019559591 1941 dbSNP
rs956706203 1955 dbSNP
rs560679834 1974 dbSNP
rs963925064 1979 dbSNP
rs1239518675 1980 dbSNP
rs992191394 1986 dbSNP
rs1331437693 1989 dbSNP
rs918146882 1992 dbSNP
rs143866262 1994 dbSNP
rs948371952 2006 dbSNP
rs1294513656 2008 dbSNP
rs975277483 2020 dbSNP
rs1259603168 2023 dbSNP
rs1157747929 2024 dbSNP
rs914390587 2030 dbSNP
rs1427810050 2038 dbSNP
rs74942329 2041 dbSNP
rs1196623388 2043 dbSNP
rs557949028 2050 dbSNP
rs529934989 2053 dbSNP
rs1224456780 2060 dbSNP
rs546780563 2065 dbSNP
rs938369617 2066 dbSNP
rs1354472568 2067 dbSNP
rs566653077 2073 dbSNP
rs538965821 2074 dbSNP
rs1331049466 2076 dbSNP
rs896749371 2091 dbSNP
rs552445313 2096 dbSNP
rs1006816276 2098 dbSNP
rs1407141969 2102 dbSNP
rs1018485960 2112 dbSNP
rs948266510 2114 dbSNP
rs903705008 2121 dbSNP
rs1000923384 2129 dbSNP
rs1170319684 2159 dbSNP
rs1045276031 2161 dbSNP
rs1366810495 2162 dbSNP
rs1201585449 2166 dbSNP
rs1476708228 2172 dbSNP
rs898651804 2173 dbSNP
rs568802229 2177 dbSNP
rs1193171528 2186 dbSNP
rs1231352246 2188 dbSNP
rs1302254898 2193 dbSNP
rs1198807838 2194 dbSNP
rs1344488608 2196 dbSNP
rs766954696 2205 dbSNP
rs995630106 2216 dbSNP
rs772713106 2219 dbSNP
rs760120780 2234 dbSNP
rs1349643215 2237 dbSNP
rs761130090 2256 dbSNP
rs1400176227 2266 dbSNP
rs1212015126 2268 dbSNP
rs187861491 2278 dbSNP
rs1019589204 2283 dbSNP
rs1394939780 2285 dbSNP
rs1209347789 2288 dbSNP
rs1249817415 2291 dbSNP
rs1178467405 2292 dbSNP
rs1464031552 2293 dbSNP
rs147242520 2295 dbSNP
rs975730829 2296 dbSNP
rs766844127 2299 dbSNP
rs574168215 2308 dbSNP
rs1185761603 2309 dbSNP
rs1426160136 2310 dbSNP
rs1243865411 2315 dbSNP
rs536464895 2316 dbSNP
rs553178377 2325 dbSNP
rs1215523293 2328 dbSNP
rs977258528 2334 dbSNP
rs767864347 2336 dbSNP
rs755367160 2337 dbSNP
rs1458082147 2338 dbSNP
rs1243670740 2347 dbSNP
rs765486131 2362 dbSNP
rs1323218383 2363 dbSNP
rs191214987 2365 dbSNP
rs959748863 2371 dbSNP
rs1392847520 2377 dbSNP
rs992455618 2383 dbSNP
rs1338164111 2384 dbSNP
rs753121436 2389 dbSNP
rs1292397820 2394 dbSNP
rs758702019 2396 dbSNP
rs1411418579 2408 dbSNP
rs201690998 2408 dbSNP
rs1045708908 2409 dbSNP
rs1472609505 2411 dbSNP
rs929761441 2414 dbSNP
rs920127765 2418 dbSNP
rs777964201 2422 dbSNP
rs931490825 2423 dbSNP
rs545333137 2430 dbSNP
rs1185513017 2435 dbSNP
rs1456774828 2437 dbSNP
rs1047196763 2440 dbSNP
rs887195786 2442 dbSNP
rs1205898268 2444 dbSNP
rs1269951807 2446 dbSNP
rs756536022 2456 dbSNP
rs1439893280 2457 dbSNP
rs1288215948 2458 dbSNP
rs565532646 2463 dbSNP
rs575551328 2469 dbSNP
rs747104393 2470 dbSNP
rs1041102733 2476 dbSNP
rs1237321178 2479 dbSNP
rs140863214 2484 dbSNP
rs184165295 2485 dbSNP
rs1444342877 2486 dbSNP
rs1272427844 2509 dbSNP
rs1175759901 2510 dbSNP
rs1021980218 2512 dbSNP
rs968637492 2513 dbSNP
rs1473131131 2514 dbSNP
rs756871009 2516 dbSNP
rs999103324 2517 dbSNP
rs1165774747 2524 dbSNP
rs1031426543 2525 dbSNP
rs892548859 2526 dbSNP
rs959819969 2531 dbSNP
rs530249811 2534 dbSNP
rs1013686605 2537 dbSNP
rs1245292139 2540 dbSNP
rs1221305685 2547 dbSNP
rs1490635645 2554 dbSNP
rs868823829 2556 dbSNP
rs1461416908 2557 dbSNP
rs779893363 2560 dbSNP
rs1166081169 2569 dbSNP
rs1352294569 2587 dbSNP
rs915606507 2594 dbSNP
rs1350025356 2603 dbSNP
rs1437986326 2604 dbSNP
rs1225344395 2611 dbSNP
rs1365423054 2616 dbSNP
rs1273958440 2618 dbSNP
rs547097296 2624 dbSNP
rs560439470 2638 dbSNP
rs1025370745 2648 dbSNP
rs1305160498 2664 dbSNP
rs973066686 2665 dbSNP
rs1344641652 2677 dbSNP
rs532340090 2689 dbSNP
rs1402888902 2699 dbSNP
rs931545968 2710 dbSNP
rs552199838 2715 dbSNP
rs1191184538 2719 dbSNP
rs778421688 2723 dbSNP
rs908704032 2727 dbSNP
rs944135918 2738 dbSNP
rs1271552928 2753 dbSNP
rs749102848 2755 dbSNP
rs899891615 2760 dbSNP
rs1260741660 2770 dbSNP
rs997267312 2772 dbSNP
rs1043029417 2777 dbSNP
rs1277808072 2780 dbSNP
rs569087103 2786 dbSNP
rs972198186 2791 dbSNP
rs1332367044 2793 dbSNP
rs72890381 2801 dbSNP
rs1031500097 2806 dbSNP
rs1290488251 2809 dbSNP
rs1361536424 2815 dbSNP
rs951095767 2815 dbSNP
rs1289744880 2826 dbSNP
rs912185498 2829 dbSNP
rs986585763 2829 dbSNP
rs959852519 2838 dbSNP
rs1470607870 2844 dbSNP
rs1431842757 2851 dbSNP
rs1039802365 2854 dbSNP
rs925190014 2855 dbSNP
rs1013981234 2863 dbSNP
rs1261988341 2865 dbSNP
rs1187957142 2870 dbSNP
rs1481974662 2873 dbSNP
rs78117021 2875 dbSNP
rs1204174179 2880 dbSNP
rs1232545046 2886 dbSNP
rs1255848337 2893 dbSNP
rs1217784382 2897 dbSNP
rs567703133 2900 dbSNP
rs533686454 2916 dbSNP
rs1296535888 2923 dbSNP
rs1184577747 2927 dbSNP
rs1255912843 2930 dbSNP
rs2138485 2945 dbSNP
rs1183025220 2948 dbSNP
rs771856105 2951 dbSNP
rs771743296 2972 dbSNP
rs905298060 2975 dbSNP
rs1329997118 2978 dbSNP
rs983021290 2980 dbSNP
rs1430043677 2990 dbSNP
rs746964444 2992 dbSNP
rs963563124 2994 dbSNP
rs1447008484 2996 dbSNP
rs993713100 2998 dbSNP
rs1462319770 3007 dbSNP
rs1381192794 3008 dbSNP
rs1212913653 3009 dbSNP
rs908736562 3010 dbSNP
rs1026418090 3013 dbSNP
rs954888727 3024 dbSNP
rs1252886422 3030 dbSNP
rs1206833763 3034 dbSNP
rs144672228 3036 dbSNP
rs373857960 3037 dbSNP
rs1207630368 3038 dbSNP
rs1278449465 3043 dbSNP
rs1485550509 3060 dbSNP
rs1307677744 3067 dbSNP
rs751457776 3075 dbSNP
rs976889641 3079 dbSNP
rs921357552 3082 dbSNP
rs1239749391 3083 dbSNP
rs964175494 3086 dbSNP
rs1300287658 3087 dbSNP
rs975099939 3089 dbSNP
rs1456006347 3093 dbSNP
rs1364570025 3103 dbSNP
rs559007668 3106 dbSNP
rs932713246 3107 dbSNP
rs772686900 3110 dbSNP
rs1445903131 3111 dbSNP
rs1043489163 3124 dbSNP
rs1377992553 3127 dbSNP
rs1474692521 3127 dbSNP
rs1243758410 3138 dbSNP
rs1419625705 3143 dbSNP
rs1189252815 3151 dbSNP
rs1490143616 3157 dbSNP
rs1186415786 3163 dbSNP
rs1223564707 3167 dbSNP
rs936536311 3180 dbSNP
rs1284006498 3181 dbSNP
rs1389070668 3195 dbSNP
rs1238895341 3200 dbSNP
rs1336880564 3203 dbSNP
rs988068208 3210 dbSNP
rs1449533768 3214 dbSNP
rs904514103 3216 dbSNP
rs1345334925 3218 dbSNP
rs1303352036 3223 dbSNP
rs1373172903 3226 dbSNP
rs934607281 3233 dbSNP
rs1052947343 3242 dbSNP
rs1046698539 3243 dbSNP
rs1365458398 3247 dbSNP
rs1196741624 3262 dbSNP
rs1360650930 3262 dbSNP
rs1269383667 3265 dbSNP
rs1200353004 3273 dbSNP
rs575859405 3274 dbSNP
rs1490907325 3291 dbSNP
rs1259671890 3292 dbSNP
rs1428607228 3297 dbSNP
rs1351573174 3299 dbSNP
rs1231761742 3300 dbSNP
rs1262997277 3300 dbSNP
rs1323232588 3302 dbSNP
rs2705730 3305 dbSNP
rs1406334089 3306 dbSNP
rs938102058 3314 dbSNP
rs1317279807 3327 dbSNP
rs555028346 3328 dbSNP
rs1386561101 3351 dbSNP
rs766906722 3356 dbSNP
rs550462681 3357 dbSNP
rs1230613746 3361 dbSNP
rs1429666827 3367 dbSNP
rs1178335533 3382 dbSNP
rs574885714 3383 dbSNP
rs1014053426 3385 dbSNP
rs199916097 3392 dbSNP
rs1371545660 3393 dbSNP
rs1447627514 3393 dbSNP
rs1491279223 3393 dbSNP
rs34335944 3393 dbSNP
rs397778401 3393 dbSNP
rs571807058 3393 dbSNP
rs1301536879 3394 dbSNP
rs1022762845 3400 dbSNP
rs1202278396 3401 dbSNP
rs1461275000 3404 dbSNP
rs1264070968 3410 dbSNP
rs1225732369 3412 dbSNP
rs74888232 3415 dbSNP
rs994590613 3416 dbSNP
rs1027763926 3417 dbSNP
rs950398469 3418 dbSNP
rs189542945 3426 dbSNP
rs1331647363 3430 dbSNP
rs760104369 3431 dbSNP
rs765456158 3437 dbSNP
rs1338691637 3443 dbSNP
rs560532628 3444 dbSNP
rs532352909 3447 dbSNP
rs545951562 3457 dbSNP
rs562658231 3468 dbSNP
rs1395561852 3471 dbSNP
rs965585389 3477 dbSNP
rs1189873414 3479 dbSNP
rs1374807367 3482 dbSNP
rs1018225935 3488 dbSNP
rs753147017 3489 dbSNP
rs1444159726 3491 dbSNP
rs1244274777 3509 dbSNP
rs1206175943 3512 dbSNP
rs763222811 3515 dbSNP
rs921441289 3525 dbSNP
rs932762507 3527 dbSNP
rs1341050338 3529 dbSNP
rs1312191003 3538 dbSNP
rs1244594455 3539 dbSNP
rs1172776841 3540 dbSNP
rs1427073035 3557 dbSNP
rs1317040548 3562 dbSNP
rs531666400 3563 dbSNP
rs548166628 3574 dbSNP
rs1319811272 3576 dbSNP
rs369114133 3579 dbSNP
rs957677225 3584 dbSNP
rs1437389823 3588 dbSNP
rs550779831 3590 dbSNP
rs1161968213 3595 dbSNP
rs1323932113 3597 dbSNP
rs934678202 3598 dbSNP
rs17704934 3602 dbSNP
rs1234307341 3608 dbSNP
rs527250991 3609 dbSNP
rs1185923451 3610 dbSNP
rs1276818864 3611 dbSNP
rs1232603204 3614 dbSNP
rs1182987074 3617 dbSNP
rs1439984258 3626 dbSNP
rs1289120002 3628 dbSNP
rs1349069944 3640 dbSNP
rs751655443 3644 dbSNP
rs949929283 3653 dbSNP
rs1221949637 3654 dbSNP
rs547092005 3661 dbSNP
rs1044656119 3663 dbSNP
rs1444096599 3664 dbSNP
rs1269337548 3672 dbSNP
rs1466600601 3673 dbSNP
rs1212331818 3679 dbSNP
rs1264714825 3681 dbSNP
rs72890384 3682 dbSNP
rs1399391500 3693 dbSNP
rs556310820 3704 dbSNP
rs1159709132 3711 dbSNP
rs938085381 3715 dbSNP
rs559137336 3718 dbSNP
rs1248024688 3719 dbSNP
rs1468419001 3722 dbSNP
rs1490416655 3724 dbSNP
rs1158077029 3725 dbSNP
rs569328416 3727 dbSNP
rs577359963 3732 dbSNP
rs1037764131 3733 dbSNP
rs1213032037 3737 dbSNP
rs1315874123 3751 dbSNP
rs1284844901 3767 dbSNP
rs538578713 3771 dbSNP
rs35905370 3775 dbSNP
rs1321095790 3780 dbSNP
rs1412655865 3782 dbSNP
rs2944346 3784 dbSNP
rs1162679207 3786 dbSNP
rs1390186267 3790 dbSNP
rs1295577188 3796 dbSNP
rs754947187 3797 dbSNP
rs1004559411 3799 dbSNP
rs1018583814 3810 dbSNP
rs1344733538 3815 dbSNP
rs1319513771 3827 dbSNP
rs1459306020 3832 dbSNP
rs1047760748 3833 dbSNP
rs965659530 3838 dbSNP
rs1430962464 3848 dbSNP
rs1481009119 3848 dbSNP
rs998428931 3852 dbSNP
rs1485240226 3853 dbSNP
rs769417030 3862 dbSNP
rs574897772 3864 dbSNP
rs1217795996 3867 dbSNP
rs1325781963 3868 dbSNP
rs1262201424 3879 dbSNP
rs1223891400 3884 dbSNP
rs778638453 3885 dbSNP
rs566946992 3889 dbSNP
rs2705729 3893 dbSNP
rs1289333979 3905 dbSNP
rs1361303422 3906 dbSNP
rs1009573905 3909 dbSNP
rs1232060877 3911 dbSNP
rs544702552 3912 dbSNP
rs1265364906 3929 dbSNP
rs1319242964 3934 dbSNP
rs1470496611 3935 dbSNP
rs1361305731 3936 dbSNP
rs1355042993 3941 dbSNP
rs956088194 3943 dbSNP
rs988773096 3950 dbSNP
rs577233468 3953 dbSNP
rs1481843711 3960 dbSNP
rs1180970882 3962 dbSNP
rs150880454 3963 dbSNP
rs1473444845 3973 dbSNP
rs1185419266 3977 dbSNP
rs1367756355 3978 dbSNP
rs900688522 3984 dbSNP
rs1462461293 3997 dbSNP
rs1044303758 4002 dbSNP
rs1202626355 4013 dbSNP
rs554769331 4016 dbSNP
rs1000391708 4026 dbSNP
rs1230687735 4027 dbSNP
rs1380742843 4029 dbSNP
rs1032074011 4034 dbSNP
rs1165027703 4051 dbSNP
rs957811999 4060 dbSNP
rs930509684 4065 dbSNP
rs562731252 4066 dbSNP
rs777470161 4069 dbSNP
rs886192595 4070 dbSNP
rs1004632862 4071 dbSNP
rs531395572 4072 dbSNP
rs1184077877 4074 dbSNP
rs1425501094 4076 dbSNP
rs542117102 4081 dbSNP
rs1040097833 4083 dbSNP
rs1480871968 4086 dbSNP
rs1312648915 4090 dbSNP
rs1341540183 4093 dbSNP
rs561601127 4095 dbSNP
rs901495195 4097 dbSNP
rs527310626 4098 dbSNP
rs1357324840 4103 dbSNP
rs1339425387 4110 dbSNP
rs998867430 4114 dbSNP
rs1274908588 4115 dbSNP
rs1483917924 4117 dbSNP
rs1324031042 4124 dbSNP
rs1198457782 4141 dbSNP
rs1391165976 4146 dbSNP
rs1028592048 4162 dbSNP
rs546952031 4173 dbSNP
rs926448229 4184 dbSNP
rs1000375440 4185 dbSNP
rs1364346876 4190 dbSNP
rs959454869 4195 dbSNP
rs1033099744 4196 dbSNP
rs759477868 4197 dbSNP
rs570095815 4206 dbSNP
rs1253751300 4211 dbSNP
rs1184557389 4215 dbSNP
rs956161983 4220 dbSNP
rs768076271 4231 dbSNP
rs1210499637 4232 dbSNP
rs1047687664 4245 dbSNP
rs1259463525 4250 dbSNP
rs1239007180 4252 dbSNP
rs1317853726 4256 dbSNP
rs1448932813 4260 dbSNP
rs911885360 4262 dbSNP
rs533073899 4265 dbSNP
rs1169470814 4266 dbSNP
rs549604683 4267 dbSNP
rs1303441618 4273 dbSNP
rs980484609 4276 dbSNP
rs535483682 4288 dbSNP
rs1288177763 4289 dbSNP
rs555704387 4289 dbSNP
rs1454270204 4290 dbSNP
rs538017899 4293 dbSNP
rs1000360660 4311 dbSNP
rs1480023459 4326 dbSNP
rs1428839126 4327 dbSNP
rs1294049209 4333 dbSNP
rs1453370375 4334 dbSNP
rs1159677310 4335 dbSNP
rs1205007427 4335 dbSNP
rs1259778300 4335 dbSNP
rs1491271683 4335 dbSNP
rs60200895 4335 dbSNP
rs796896319 4335 dbSNP
rs1491189923 4336 dbSNP
rs930517593 4344 dbSNP
rs1048926544 4345 dbSNP
rs1323337823 4348 dbSNP
rs907703088 4348 dbSNP
rs1283494741 4351 dbSNP
rs940450009 4351 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067870. RNA binding protein: AGO2. Condition:Ago2 IP-seq (mitotic cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aaggUGACGAU---GUUGGAGGGUCu 5'
              ||||| |   | :|||||||| 
Target 5' ----ACUGCAACCUCUGCCUCCCAGc 3'
1 - 22
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760630. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aaGGUGACGAU---GUUGGAGGGUCu 5'
            :|||||| |   | :|||||||| 
Target 5' gcUCACUGCAACCUCUGCCUCCCAG- 3'
11 - 35
Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1067870
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (mitotic cells)
Location of target site ENST00000354221.4 | 3UTR | ACUGCAACCUCUGCCUCCCAGCUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC -0.959 0.09 -1.000 0.5 3 Click to see details
HNSC -0.959 0.09 -1.000 0.5 3 Click to see details
HNSC -0.959 0.09 -1.000 0.5 3 Click to see details
HNSC -0.959 0.09 -1.000 0.5 3 Click to see details
HNSC -0.959 0.09 -1.000 0.5 3 Click to see details
HNSC -0.959 0.09 -1.000 0.5 3 Click to see details
HNSC -0.959 0.09 -1.000 0.5 3 Click to see details
HNSC -0.959 0.09 -1.000 0.5 3 Click to see details
HNSC -0.959 0.09 -1.000 0.5 3 Click to see details
167 hsa-miR-3192-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058548 CTTNBP2NL CTTNBP2 N-terminal like 2 2
MIRT139892 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT207395 MAT2A methionine adenosyltransferase 2A 2 6
MIRT294640 ZNF548 zinc finger protein 548 2 2
MIRT324251 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT441475 BEST3 bestrophin 3 2 2
MIRT445233 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT446763 ZNF491 zinc finger protein 491 2 2
MIRT451003 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 2
MIRT452436 QDPR quinoid dihydropteridine reductase 2 2
MIRT452582 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452950 DISC1 disrupted in schizophrenia 1 2 2
MIRT453309 ZNF394 zinc finger protein 394 2 2
MIRT453810 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT454101 TMEM209 transmembrane protein 209 2 2
MIRT456228 LIX1L limb and CNS expressed 1 like 2 4
MIRT456738 TMEM239 transmembrane protein 239 2 2
MIRT456806 SIGLEC14 sialic acid binding Ig like lectin 14 2 4
MIRT457499 SLC35F6 solute carrier family 35 member F6 2 2
MIRT458037 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459041 ZNF490 zinc finger protein 490 2 2
MIRT459135 FADS6 fatty acid desaturase 6 2 2
MIRT460126 CXCL16 C-X-C motif chemokine ligand 16 2 2
MIRT460506 FAM105A family with sequence similarity 105 member A 2 6
MIRT460944 NOA1 nitric oxide associated 1 2 4
MIRT461101 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT462641 PHF5A PHD finger protein 5A 2 2
MIRT463584 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT466567 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467090 SRRD SRR1 domain containing 2 2
MIRT471093 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472596 NACC1 nucleus accumbens associated 1 2 2
MIRT473084 MORN4 MORN repeat containing 4 2 2
MIRT475977 GTPBP2 GTP binding protein 2 2 2
MIRT477054 FAM210A family with sequence similarity 210 member A 2 2
MIRT478303 DDX19A DEAD-box helicase 19A 2 4
MIRT478489 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478500 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT478858 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479096 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 2
MIRT479180 CLSPN claspin 2 2
MIRT479215 CLCC1 chloride channel CLIC like 1 2 2
MIRT481176 AVL9 AVL9 cell migration associated 2 6
MIRT483032 KHSRP KH-type splicing regulatory protein 2 4
MIRT485150 RASL10B RAS like family 10 member B 2 2
MIRT486104 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486319 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT489443 IFNLR1 interferon lambda receptor 1 2 2
MIRT489585 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489702 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490184 TMEM63C transmembrane protein 63C 2 2
MIRT491211 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491276 DHX40 DEAH-box helicase 40 2 2
MIRT495162 CNGA2 cyclic nucleotide gated channel alpha 2 2 4
MIRT495222 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT496820 CHRNB2 cholinergic receptor nicotinic beta 2 subunit 2 2
MIRT498602 KRT8 keratin 8 2 2
MIRT500003 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT502065 KRAS KRAS proto-oncogene, GTPase 2 2
MIRT508197 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508477 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT509635 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT511039 NRF1 nuclear respiratory factor 1 2 2
MIRT516684 ZNF860 zinc finger protein 860 2 4
MIRT518394 ZNF250 zinc finger protein 250 2 2
MIRT518907 CDC14B cell division cycle 14B 2 2
MIRT520502 TRAM2 translocation associated membrane protein 2 2 6
MIRT521459 RAD51 RAD51 recombinase 2 2
MIRT522354 NCKIPSD NCK interacting protein with SH3 domain 2 4
MIRT522594 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT523267 HIST1H2AE histone cluster 1 H2A family member e 2 2
MIRT523532 GLUL glutamate-ammonia ligase 2 4
MIRT524186 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT526842 PHC1 polyhomeotic homolog 1 2 2
MIRT528729 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT540695 BMP3 bone morphogenetic protein 3 2 2
MIRT544483 TRIM4 tripartite motif containing 4 2 2
MIRT551566 LETM1 leucine zipper and EF-hand containing transmembrane protein 1 2 2
MIRT563619 ZNF277 zinc finger protein 277 2 2
MIRT564467 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565031 VAV2 vav guanine nucleotide exchange factor 2 2 2
MIRT570294 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT572932 VDAC2 voltage dependent anion channel 2 2 2
MIRT573501 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573675 HES6 hes family bHLH transcription factor 6 2 2
MIRT609619 TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein 2 2
MIRT611966 PKD1 polycystin 1, transient receptor potential channel interacting 2 2
MIRT613930 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT617733 ATCAY ATCAY, caytaxin 2 4
MIRT618878 MBL2 mannose binding lectin 2 2 2
MIRT627590 SHROOM3 shroom family member 3 2 2
MIRT628516 ZNF878 zinc finger protein 878 2 2
MIRT633964 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT634530 NEGR1 neuronal growth regulator 1 2 2
MIRT635455 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT636412 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT639672 PPEF2 protein phosphatase with EF-hand domain 2 2 6
MIRT642667 RGS6 regulator of G protein signaling 6 2 2
MIRT644080 A4GALT alpha 1,4-galactosyltransferase (P blood group) 2 2
MIRT647318 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647942 RNF152 ring finger protein 152 2 2
MIRT648687 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT648817 ZNF689 zinc finger protein 689 2 2
MIRT650347 TREM1 triggering receptor expressed on myeloid cells 1 2 2
MIRT650374 MOCS3 molybdenum cofactor synthesis 3 2 4
MIRT655935 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT663778 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT664297 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT665842 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT668929 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT669673 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669907 KIAA0754 KIAA0754 2 4
MIRT670248 TRIM13 tripartite motif containing 13 2 2
MIRT670368 ULBP3 UL16 binding protein 3 2 4
MIRT670642 BVES blood vessel epicardial substance 2 2
MIRT670749 HOOK3 hook microtubule tethering protein 3 2 2
MIRT671184 ZNF891 zinc finger protein 891 2 2
MIRT673946 ZNF500 zinc finger protein 500 2 2
MIRT674682 PLCE1 phospholipase C epsilon 1 2 2
MIRT677912 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678876 FAM118A family with sequence similarity 118 member A 2 2
MIRT679528 RAB36 RAB36, member RAS oncogene family 2 2
MIRT680589 ZNF573 zinc finger protein 573 2 2
MIRT680650 KIAA1456 KIAA1456 2 2
MIRT681149 INTS7 integrator complex subunit 7 2 2
MIRT681177 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681234 DUSP19 dual specificity phosphatase 19 2 2
MIRT681626 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681643 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT681926 KAT7 lysine acetyltransferase 7 2 2
MIRT682050 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT682156 SMS spermine synthase 2 2
MIRT683555 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684304 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT684458 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT685986 CCDC77 coiled-coil domain containing 77 2 2
MIRT686782 AZF1 azoospermia factor 1 2 2
MIRT687329 OSMR oncostatin M receptor 2 2
MIRT687629 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT688792 CCNB1 cyclin B1 2 2
MIRT689756 PRR13 proline rich 13 2 2
MIRT690823 SGSM2 small G protein signaling modulator 2 2 2
MIRT691310 ZNF681 zinc finger protein 681 2 2
MIRT692676 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT693508 MOB3A MOB kinase activator 3A 2 2
MIRT694657 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694889 ZNF417 zinc finger protein 417 2 2
MIRT695740 ZNF117 zinc finger protein 117 2 2
MIRT697101 GPKOW G-patch domain and KOW motifs 2 2
MIRT698968 SPAST spastin 2 2
MIRT700379 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT703930 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT706234 SYT15 synaptotagmin 15 2 2
MIRT706494 SEPT6 septin 6 2 2
MIRT710451 BTNL3 butyrophilin like 3 2 2
MIRT711684 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT711997 F9 coagulation factor IX 2 2
MIRT712727 NCAPG2 non-SMC condensin II complex subunit G2 2 2
MIRT713111 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT713156 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT713440 AJAP1 adherens junctions associated protein 1 2 2
MIRT713830 NUP98 nucleoporin 98 2 2
MIRT714979 RAB21 RAB21, member RAS oncogene family 2 2
MIRT717411 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT718433 ZNF85 zinc finger protein 85 2 2
MIRT720575 SDHAF2 succinate dehydrogenase complex assembly factor 2 2 2
MIRT725098 TMEM120B transmembrane protein 120B 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3192 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3192 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-3192 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3192-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3192-5p Platinum 23939 resistant tissue
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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