pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol F2RL2   
Synonyms PAR-3, PAR3
Description coagulation factor II thrombin receptor like 2
Transcript NM_004101   
Expression
Putative miRNA Targets on F2RL2
3'UTR of F2RL2
(miRNA target sites are highlighted)
>F2RL2|NM_004101|3'UTR
   1 TGAAATGATCTTAGAGAACAAGGACAGCCATCACAGAGAACGTCTGTTTTCAAGAACAACATAAGCATAGTGCAAGGAGC
  81 TCCATTTCCGAGCTCCTAAGAAATATGCTTCAAAGGTCAAACATTACAAAAGCATTAGTAGTTTGTTTGTTTGTTTTTGA
 161 GACTGAGTCTCACTTTATCACCCAGACTGGCGTGCAGTGGCACTATCTTGGCTCATTGCAACCTCTGCCTCCCAGGTCAG
 241 CCTCCCAAGTAGCTGGGATTACACCACCATGCCCAGCTACTAAAAATACTTGTATTTTTAGTAGAGACGGGGTTTCACCA
 321 TGTTGACCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCTTCCGGCCTCAGCCTCCCAAAGTGCTGGATTACAGGCGT
 401 GAGCCACTGAGCCAGCCAGCATTAGTAATTTTTAAAAACACTTTATCAGTATTTTAAAAATGTTAATGCAGGAGAAAAGA
 481 TATCACAACTCTATGGAAAATGACATTTCCATTTGCCTTATTGCTACTTCAAGCTCTTTAAATCACCATCTTCCCTATTT
 561 CTGTGAGTGGTATTGCCATCCTTGACATTTGACATCATTTTTTATTCTTTGGTCTCTTTTGACTCTCATGCTGGTGGCTG
 641 CCTCATCAACTGATTCTATCTTTGTAGGGTCCCTCACCAGGGTCTTTTATCTAGTTTCACCTTTGCCTTCTTTTTTCCTT
 721 TTTTTAATAGAGACAGTGTCTCGCTTCGTCACCTGGCTGAAGTGCAGTAGCCTGATCATAGCTCACTTCAGCCTCCAACT
 801 CCTGGGCTCAAGCAATCCTGCTGTCTCAGCCTCCCAAGTAACTAAGACTACAGGCATGCACCACCATACCCAACTAATTT
 881 TATTTTTTATTTTTTGCAGAGATGGAGTCTCACTGTTGCCCAGGCTGGTCTTGAACTCCTGGTCTCGAGTGATCTTCCTA
 961 TCTCAGCCTCCCAAAGTGCTGGGACTACAGGCATGAGCCACTACGTCCAGGCCACCTCTACCTTCTAACCATTCTCTCCA
1041 CTGCCAGCCTACCCTCCACCACTTCACAAGTCCTGCCAGATTAATCTTCCTTAGATATCAGTTAGGATACATCACTAAAA
1121 CATTTCCACTAACTCCACTGTTTCTATAATAAATCATAAATCTTTAGCCTGGCATTCAAGGCTAACTTGCTAATCACACT
1201 TCCCATTAAACCTTGCTTATGATATAGGCACCAACCAAACCTCTTGCTCTGCTATATCTCCACTCTGCCTCAGACTGAAA
1281 AGCTAGTCCTAACGTCTTTGCCTTAATTCTGTTCATTTTTTCAAGTCCTTGAAGGACCATTCTTCCCTGATTCTCAGGCT
1361 AGAAGTGTCACTTTTCTTATCTGTACTTCCAAAGCACTTTCGTATATTTTTATTATGGCATTTATATATAGTTCATTTAT
1441 ATTTAAATTTTAATTCCATGAACAATCAAGTACCAAGTATAATGGAGAAGGTGCTCATCCTCTGCCTTCCTTGAGCTTCT
1521 GGGTGATGCCAGGCCCAAGTCTTTGTGGCACCCAGCTCCATGCTTTGAATACTATGTGGCTGAATGAATTTTTAAAATCT
1601 CAAAGCAGTTAAACAGCAGGAAAGCCCATTAACTTCGTACTGAAAAAGCAACATACTGTGATGATACGGGATGACATCAT
1681 TTCAGGTTGGGCATACAAAAAAGTAAGGAAGCTAAACTAAGACTATACTCACCAGGCCATTTAGAAGTTTTAAATAATGC
1761 CTCCACTATTTTTTTTCTTAGACATAGCTTTTAATGGGGAAATGGAATTTTGTTATTAATACCCATTATATTCCTGTAAG
1841 TAAATGACTATTTTTCCCTTAACTCAGTGATTAGACAGGAAGGAAGACATTAGTGATTAGACAGGAGGGAAGATATTAGT
1921 GATTAGACAGCAGGGAAGATATTAGTGGTAAAGAGTGAATGATAGTAGTGAATATAAATGGGGCTGAGGAAACTTTAAGC
2001 ATAAAAGATTCCTGAGATGACTTTACAAGTCTGTACGAATCTGCCTTGACTGTATATTTCATACTGCCCAACAAAACAAT
2081 AAAAAACAATTTTAAATGCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  :||||||| 
Target 5' atTGCAACCTCTGCCTCCCAg 3'
215 - 235 167.00 -27.00
2
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            | |:||||  :||||||| 
Target 5' ctTCCGGCCTCAGCCTCCCAa 3'
361 - 381 163.00 -22.50
3
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            ||| |:||  :||||||| 
Target 5' ccTGCTGTCTCAGCCTCCCAa 3'
817 - 837 163.00 -23.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30452372 32 COSMIC
COSN31573840 38 COSMIC
COSN30543319 41 COSMIC
COSN30169698 59 COSMIC
COSN30122422 68 COSMIC
COSN30484854 77 COSMIC
COSN30163600 88 COSMIC
COSN14762636 102 COSMIC
COSN31593612 138 COSMIC
COSN31778397 516 COSMIC
COSN26567811 1006 COSMIC
COSN30542054 1198 COSMIC
COSN26688053 1402 COSMIC
COSN27360536 1463 COSMIC
COSN26507507 1493 COSMIC
COSN25765124 1505 COSMIC
COSN30538915 1509 COSMIC
COSN32065281 1636 COSMIC
COSN31587947 1667 COSMIC
COSN31482524 1670 COSMIC
COSN28696273 1692 COSMIC
COSN2117699 1750 COSMIC
COSN20101383 1810 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1244654724 3 dbSNP
rs2069684 6 dbSNP
rs1241043038 10 dbSNP
rs763773916 19 dbSNP
rs762756940 23 dbSNP
rs1283817742 27 dbSNP
rs1222175128 30 dbSNP
rs775317252 32 dbSNP
rs1411038367 33 dbSNP
rs1315766767 34 dbSNP
rs777253204 35 dbSNP
rs2069701 41 dbSNP
rs200098123 42 dbSNP
rs1431917632 43 dbSNP
rs769307910 46 dbSNP
rs1181294111 51 dbSNP
rs1317158672 51 dbSNP
rs572690258 57 dbSNP
rs958682642 64 dbSNP
rs1406474940 65 dbSNP
rs1343573955 67 dbSNP
rs1034676876 68 dbSNP
rs1002234443 69 dbSNP
rs1447584692 77 dbSNP
rs1282590043 78 dbSNP
rs1258272489 85 dbSNP
rs968441631 89 dbSNP
rs1022276477 90 dbSNP
rs1009674089 97 dbSNP
rs1234118607 98 dbSNP
rs2069685 102 dbSNP
rs2069702 106 dbSNP
rs1209015356 109 dbSNP
rs190180917 116 dbSNP
rs1182267834 124 dbSNP
rs1411231068 131 dbSNP
rs1411922939 132 dbSNP
rs2069686 135 dbSNP
rs1040345188 139 dbSNP
rs1425633089 142 dbSNP
rs1308416175 150 dbSNP
rs1332484827 153 dbSNP
rs372139148 154 dbSNP
rs1413932615 157 dbSNP
rs1400047555 159 dbSNP
rs757460096 162 dbSNP
rs1174221794 165 dbSNP
rs1356486659 167 dbSNP
rs759254142 182 dbSNP
rs551078614 191 dbSNP
rs1046672204 192 dbSNP
rs1348638938 203 dbSNP
rs1407330875 205 dbSNP
rs368607249 216 dbSNP
rs567479800 219 dbSNP
rs929735134 220 dbSNP
rs1344811894 221 dbSNP
rs1217803430 223 dbSNP
rs1276153310 225 dbSNP
rs1473373181 227 dbSNP
rs947790955 235 dbSNP
rs550301042 238 dbSNP
rs916989729 242 dbSNP
rs530516675 250 dbSNP
rs1205359798 267 dbSNP
rs1252089192 272 dbSNP
rs1187751434 280 dbSNP
rs1441028319 286 dbSNP
rs1250433642 294 dbSNP
rs992713069 298 dbSNP
rs1201559831 302 dbSNP
rs1247179150 303 dbSNP
rs753600254 308 dbSNP
rs927262691 309 dbSNP
rs979101098 312 dbSNP
rs1168153575 319 dbSNP
rs1368816262 321 dbSNP
rs989244760 327 dbSNP
rs1324829807 329 dbSNP
rs968600230 330 dbSNP
rs766140776 345 dbSNP
rs570072931 348 dbSNP
rs1022308877 354 dbSNP
rs1350525410 365 dbSNP
rs1266328383 366 dbSNP
rs1339498699 371 dbSNP
rs1224061122 373 dbSNP
rs1290575020 374 dbSNP
rs186008904 378 dbSNP
rs956812462 384 dbSNP
rs1196572408 399 dbSNP
rs181385728 404 dbSNP
rs998390675 412 dbSNP
rs2069687 415 dbSNP
rs1447078916 422 dbSNP
rs188551970 424 dbSNP
rs1426699892 425 dbSNP
rs760829267 433 dbSNP
rs772808862 441 dbSNP
rs1390035650 443 dbSNP
rs1404105270 455 dbSNP
rs2069703 467 dbSNP
rs888663492 469 dbSNP
rs1046748816 470 dbSNP
rs1318034262 471 dbSNP
rs573925844 478 dbSNP
rs1296497132 480 dbSNP
rs1458346023 481 dbSNP
rs929641843 488 dbSNP
rs895592683 489 dbSNP
rs1057270896 490 dbSNP
rs1246456128 491 dbSNP
rs1284279394 494 dbSNP
rs1027667151 496 dbSNP
rs1208012193 502 dbSNP
rs937077994 507 dbSNP
rs1471584415 515 dbSNP
rs994899810 516 dbSNP
rs897644207 521 dbSNP
rs927139463 544 dbSNP
rs1246486160 546 dbSNP
rs1446689354 547 dbSNP
rs1188431923 556 dbSNP
rs1446930419 557 dbSNP
rs961536 564 dbSNP
rs544747148 573 dbSNP
rs947296414 580 dbSNP
rs913145916 584 dbSNP
rs1390007023 587 dbSNP
rs988182741 589 dbSNP
rs1272830200 600 dbSNP
rs1457094773 606 dbSNP
rs1226851787 607 dbSNP
rs956675626 609 dbSNP
rs575678994 617 dbSNP
rs1397447120 621 dbSNP
rs774013674 627 dbSNP
rs1285738932 633 dbSNP
rs1339415763 646 dbSNP
rs977257954 648 dbSNP
rs964120584 651 dbSNP
rs1245240497 656 dbSNP
rs1364445093 657 dbSNP
rs1241948275 660 dbSNP
rs570686103 665 dbSNP
rs1018864510 675 dbSNP
rs1290212341 677 dbSNP
rs1295289494 681 dbSNP
rs1329763419 688 dbSNP
rs1227653087 689 dbSNP
rs768498680 696 dbSNP
rs1436700898 713 dbSNP
rs1201272442 717 dbSNP
rs947709592 723 dbSNP
rs1440831496 725 dbSNP
rs34421679 726 dbSNP
rs1184059336 730 dbSNP
rs1412720963 736 dbSNP
rs558749688 742 dbSNP
rs150370480 743 dbSNP
rs1025834078 747 dbSNP
rs759571869 748 dbSNP
rs1164263608 759 dbSNP
rs1475281417 767 dbSNP
rs1172842115 773 dbSNP
rs993822293 777 dbSNP
rs935098521 797 dbSNP
rs1393851365 799 dbSNP
rs1309332818 806 dbSNP
rs1350499330 820 dbSNP
rs1409171514 827 dbSNP
rs1388914331 829 dbSNP
rs1313792545 853 dbSNP
rs749097235 855 dbSNP
rs895499507 866 dbSNP
rs1255683982 869 dbSNP
rs2069688 877 dbSNP
rs141376959 882 dbSNP
rs1252665840 886 dbSNP
rs547273908 887 dbSNP
rs1180708203 889 dbSNP
rs1482740595 889 dbSNP
rs977626684 889 dbSNP
rs879564631 894 dbSNP
rs905578728 899 dbSNP
rs1252473650 906 dbSNP
rs1376214262 907 dbSNP
rs1464241013 914 dbSNP
rs1170040520 925 dbSNP
rs1370667064 926 dbSNP
rs1428501744 927 dbSNP
rs1306155373 933 dbSNP
rs536537852 946 dbSNP
rs947202991 947 dbSNP
rs567566627 960 dbSNP
rs1290844504 962 dbSNP
rs2069704 967 dbSNP
rs1230930841 973 dbSNP
rs1027635107 983 dbSNP
rs973446030 985 dbSNP
rs536782543 991 dbSNP
rs571332772 995 dbSNP
rs551159409 998 dbSNP
rs922594150 1004 dbSNP
rs976744367 1005 dbSNP
rs2069689 1006 dbSNP
rs911306878 1023 dbSNP
rs2069690 1031 dbSNP
rs1448426060 1039 dbSNP
rs1166184260 1045 dbSNP
rs952868630 1047 dbSNP
rs1025739366 1052 dbSNP
rs1458370197 1056 dbSNP
rs1292833064 1059 dbSNP
rs72777533 1065 dbSNP
rs79486762 1067 dbSNP
rs192155471 1071 dbSNP
rs1429557782 1072 dbSNP
rs1369128791 1075 dbSNP
rs758795409 1086 dbSNP
rs753309756 1089 dbSNP
rs547902182 1095 dbSNP
rs1226373243 1098 dbSNP
rs35656371 1099 dbSNP
rs1314955999 1109 dbSNP
rs1430961588 1111 dbSNP
rs1221515088 1115 dbSNP
rs1001203235 1119 dbSNP
rs905650002 1129 dbSNP
rs1395005963 1132 dbSNP
rs1209732124 1138 dbSNP
rs1247728074 1145 dbSNP
rs1448518409 1157 dbSNP
rs935067206 1168 dbSNP
rs1189606090 1169 dbSNP
rs1423860601 1172 dbSNP
rs531305010 1181 dbSNP
rs1041201082 1211 dbSNP
rs1458680018 1213 dbSNP
rs1181402973 1220 dbSNP
rs1482170978 1221 dbSNP
rs755333358 1225 dbSNP
rs1206943471 1228 dbSNP
rs543659800 1236 dbSNP
rs754257062 1246 dbSNP
rs145910089 1247 dbSNP
rs117606150 1254 dbSNP
rs1227785843 1255 dbSNP
rs1311274480 1256 dbSNP
rs891651103 1261 dbSNP
rs1346467166 1262 dbSNP
rs565383150 1264 dbSNP
rs1229493217 1273 dbSNP
rs1050680563 1282 dbSNP
rs1463795491 1289 dbSNP
rs1274882735 1293 dbSNP
rs1238824364 1294 dbSNP
rs760425620 1297 dbSNP
rs920587002 1314 dbSNP
rs1254687614 1325 dbSNP
rs1267489993 1328 dbSNP
rs933231332 1333 dbSNP
rs142445825 1339 dbSNP
rs1473539546 1342 dbSNP
rs1159751050 1343 dbSNP
rs1408862345 1347 dbSNP
rs923203812 1349 dbSNP
rs1310312594 1362 dbSNP
rs1178562569 1364 dbSNP
rs1359946687 1365 dbSNP
rs1410816167 1373 dbSNP
rs151054502 1387 dbSNP
rs749877946 1395 dbSNP
rs907929951 1396 dbSNP
rs562130982 1401 dbSNP
rs911324226 1402 dbSNP
rs984183531 1404 dbSNP
rs952775708 1406 dbSNP
rs1312415611 1412 dbSNP
rs1416621979 1418 dbSNP
rs1425994243 1419 dbSNP
rs1047494 1420 dbSNP
rs1182857626 1424 dbSNP
rs1471734647 1428 dbSNP
rs1250955310 1432 dbSNP
rs972843575 1435 dbSNP
rs536575075 1446 dbSNP
rs1425541602 1470 dbSNP
rs1012159767 1479 dbSNP
rs1171969604 1482 dbSNP
rs1483245274 1486 dbSNP
rs1236876042 1490 dbSNP
rs573977751 1491 dbSNP
rs1313831832 1509 dbSNP
rs960602931 1511 dbSNP
rs1439142952 1514 dbSNP
rs1227242584 1523 dbSNP
rs1367282417 1527 dbSNP
rs1326710511 1529 dbSNP
rs1277709448 1533 dbSNP
rs1343736531 1534 dbSNP
rs1035946148 1548 dbSNP
rs774288695 1556 dbSNP
rs557195493 1563 dbSNP
rs190680932 1570 dbSNP
rs1436008763 1575 dbSNP
rs1021273607 1577 dbSNP
rs866974005 1586 dbSNP
rs1229440624 1607 dbSNP
rs1247103804 1612 dbSNP
rs1477557750 1614 dbSNP
rs1192045331 1615 dbSNP
rs1392243309 1624 dbSNP
rs1450243279 1630 dbSNP
rs1011331469 1636 dbSNP
rs2069691 1637 dbSNP
rs1301414974 1647 dbSNP
rs185732573 1653 dbSNP
rs1360187240 1656 dbSNP
rs997355382 1665 dbSNP
rs901780728 1667 dbSNP
rs1414522729 1668 dbSNP
rs193230021 1672 dbSNP
rs1423424017 1673 dbSNP
rs1228594236 1674 dbSNP
rs762699223 1675 dbSNP
rs2069692 1677 dbSNP
rs565699692 1680 dbSNP
rs1230000067 1681 dbSNP
rs1290482934 1686 dbSNP
rs943252092 1687 dbSNP
rs2069693 1692 dbSNP
rs1249592500 1694 dbSNP
rs1465526439 1696 dbSNP
rs1207613613 1697 dbSNP
rs187480998 1702 dbSNP
rs1473799290 1704 dbSNP
rs940664740 1706 dbSNP
rs1413683327 1708 dbSNP
rs1460265207 1726 dbSNP
rs1048343742 1730 dbSNP
rs1463137056 1731 dbSNP
rs528861543 1736 dbSNP
rs1435406631 1751 dbSNP
rs878963131 1758 dbSNP
rs1269436720 1760 dbSNP
rs907892648 1765 dbSNP
rs1284779408 1769 dbSNP
rs1320686134 1771 dbSNP
rs982207691 1777 dbSNP
rs369823004 1779 dbSNP
rs116836657 1781 dbSNP
rs1329552572 1785 dbSNP
rs1208391012 1788 dbSNP
rs1259885760 1794 dbSNP
rs1444253056 1798 dbSNP
rs938846548 1802 dbSNP
rs991022670 1803 dbSNP
rs1236906531 1815 dbSNP
rs1474518588 1817 dbSNP
rs1380599297 1823 dbSNP
rs1297476508 1828 dbSNP
rs928912644 1829 dbSNP
rs1457026745 1832 dbSNP
rs1157697341 1836 dbSNP
rs139687205 1839 dbSNP
rs200663845 1840 dbSNP
rs2069694 1840 dbSNP
rs550055000 1843 dbSNP
rs1390964729 1844 dbSNP
rs1321246445 1845 dbSNP
rs1032232282 1856 dbSNP
rs533162021 1865 dbSNP
rs564118159 1869 dbSNP
rs970672954 1871 dbSNP
rs1350933822 1876 dbSNP
rs35717158 1880 dbSNP
rs1162501451 1884 dbSNP
rs1425314483 1894 dbSNP
rs999462171 1897 dbSNP
rs966347806 1900 dbSNP
rs1385832648 1903 dbSNP
rs1021306467 1913 dbSNP
rs989805445 1914 dbSNP
rs747299845 1917 dbSNP
rs1249367233 1918 dbSNP
rs1253153705 1924 dbSNP
rs1205138858 1930 dbSNP
rs773156893 1931 dbSNP
rs78370291 1935 dbSNP
rs1047529 1943 dbSNP
rs889572067 1944 dbSNP
rs182754102 1953 dbSNP
rs1374361052 1954 dbSNP
rs191769621 1955 dbSNP
rs1412192002 1963 dbSNP
rs899350679 1982 dbSNP
rs1351028098 1985 dbSNP
rs1390680009 1987 dbSNP
rs1322660120 1998 dbSNP
rs1047530 2008 dbSNP
rs371304065 2022 dbSNP
rs1007478901 2036 dbSNP
rs1345892510 2037 dbSNP
rs1207380942 2044 dbSNP
rs1046873750 2045 dbSNP
rs779408725 2046 dbSNP
rs1048417185 2047 dbSNP
rs1226866603 2061 dbSNP
rs949417559 2062 dbSNP
rs1394087151 2067 dbSNP
rs541873066 2072 dbSNP
rs1370569151 2080 dbSNP
rs1461438145 2084 dbSNP
rs931311626 2087 dbSNP
rs1392682908 2088 dbSNP
rs1387126541 2094 dbSNP
rs1298425921 2099 dbSNP
rs573669261 2100 dbSNP
rs1369061320 2101 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067870. RNA binding protein: AGO2. Condition:Ago2 IP-seq (mitotic cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugACGUCGGAACUGGAGGguc 5'
            |||| |||  :|||||   
Target 5' auUGCAACCUCUGCCUCC--- 3'
8 - 25
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760631. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_B ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  :||||||| 
Target 5' auUGCAACCUCUGCCUCCCAg 3'
11 - 31
Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1067870
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (mitotic cells)
Location of target site ENST00000296641.4 | 3UTR | UUGGCUCAUUGCAACCUCUGCCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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