pre-miRNA Information
pre-miRNA hsa-mir-3120   
Genomic Coordinates chr1: 172138808 - 172138888
Description Homo sapiens miR-3120 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3120-5p
Sequence 13| CCUGUCUGUGCCUGCUGUACA |33
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 1 + 172138838 26449202, 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26637643 8 COSMIC
COSN31603497 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386761 8 dbSNP
rs760725207 9 dbSNP
rs766486759 10 dbSNP
rs754055278 12 dbSNP
rs755288536 19 dbSNP
rs754726014 21 dbSNP
Putative Targets

Gene Information
Gene Symbol KCNE4   
Synonyms MIRP3
Description potassium voltage-gated channel subfamily E regulatory subunit 4
Transcript NM_080671   
Expression
Putative miRNA Targets on KCNE4
3'UTR of KCNE4
(miRNA target sites are highlighted)
>KCNE4|NM_080671|3'UTR
   1 CACCCCCGGGACCCCTGCCGGTGGCTCCATCAGCCAGCAACCTTAGAGAGAGGAAAGACAGTTTTCAAGTGTCTGGTTTC
  81 ACTTTCACAGTGCGGCTGCCACTTTGAAGAGACCCTTGGTAAACCCCTGATTCGGGGTGGGGTGGGGGACTAGGCTCAGC
 161 CGGAACCAGCACCTCCAAGGAGTCCGGGAGGTGCCTGTGGTTTGCACCCACCACTGAAAAAGCCGCGGAGATGCGCAGCG
 241 CGTACACTGACTTTGGGGCCTGGGTGTTGGGGTTCTGATCAGAATTTGGCGGGATGATATGTTTGCCATTTTCTCACTGG
 321 ATGCCCTGGGTAGCTCCTGCAGGGTCTGCCTGTTCCCAGGGCTGCCGAATGCTTAGGACACGCTGAGAGACTAGTTGTGA
 401 TTTGCTATTTTGCCTAGAGCTTTGTCCTTCTAGATCTGATTGGCTGTAAGTATCTCTACTGTGTACCTGTGGCATTCCTT
 481 CACAGTGGGTTACAAGCTTCTTTTGGATTAGAGGGGGATTTTTGATGGGAGAAAGCTGGAGATCTGAACCCAGCCCATTT
 561 GCACACTATAAGAAAAAAAAGTAACTTTTAAACCTGTTAACATTGGCCGGGGTTATAAGAGATGATCTTCTATTTTGACC
 641 TTTTGTCTAACTTATGACCTTGAACTCTGACCTGTGACCATGCAGCATCACATGATGGCATGACGTTCTTTGGATCAGAA
 721 GAGCTTCCCCAGAATCTAACCTGCACTCCCGATGGTGGTTCAGGAGACTCTTCCTGATCTTTCTAGAAGGGGTAAAGTGG
 801 GGTTGAACAAGGCCAAGCCGTTAGCTCTGCTGCTGCTCAGTTTCCCAGCCTAGTTTTCTGAGCTGGGAGAGGACATAATG
 881 TGGTATTTCGTCACGTAGCTGAGACCTAGAAGGGCATACTCAGGCGGAGATTGCACAAAGCTGGGCTCCAAGTTCTGTGC
 961 TTCCTGATCCCGAGCCCTGACACTCATTTGCTGTGTGGTCCCGGGCATGTCATCAAGAAGCTCGCTGTCTGCATGAGGCT
1041 CCCGACGATCTCCATCCCCAGGGGGTTGGGAGGATGTCTTTAGATTTTAGGACTCTGTGATAAATATTCCACAGCCTGGT
1121 GTGAGGAAGCTTGGACCAAATGCTTCCCCTTTGGCCGGTTAGTCTGAACAAGGATCTGCTGATTTAAAGGAGCAGTTGGA
1201 GATTCAGAACACATATAACTGGGGAATTCAGGGCAAGCTACCAACCCAGCCCTGCTGTAGTTTTCCCAGGACTGAAGGAA
1281 AGAGGCAGACACCACATTCTCCTCTGCAAAGTTCTCTGGAGAATGTGTGATGTTAACACTCCCAGCTAAGGGAAAGCAAA
1361 GTCTAAAGGAAAACACACAGGAATGCTTCCAATGTCTCCAAGTATTCCTGTGGTCAACAGTTTCGCAGATCCGTTAGGCC
1441 CTTAAAGACAAGGAGGAAGTAAAAGGTCAAATTTAAATCTATTTAAAAAAACTTTTAAAAAAATTATTTATTTATTATTA
1521 TTTTTTATTTTTAAGACAGAATCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACCTCC
1601 ACCTCCTGGGTTTCAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCTGCCACCACGCCCAGCTA
1681 ATTTTTTGATTTTTAGTAGAGATGGGGTTTCGCCATTTTGGCCAGGCTGGTCTCAAACTCCTGGCCTTAAATGATCCTCC
1761 CACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCGGCCACTTTTTTTTTTTTTAAAGAAAAATG
1841 CTCTGCATGGATTGGAGACACAGCAATAACTACTGTTGCCATGGAAGGGTTAACAGTGTAGGAGCTGGTTTATCAGTCCG
1921 CTTTGACATACAGCTAAAGGAAATTTATGTTTGGGGGAAAAAGGCCCTCTGTTCACTTTAAAATTCAGTGTGGACTTATG
2001 CCAAAGGGGGCTGTTTAAGTTGAAAGAAGCCAAGTTAAGTTTGGCCTCTTGCCTGGAATCACTTGAATTCTGAAATTTCA
2081 CTGCGACGGACATGTGCCTTGTCACATTTTCCATTGCTTAATCCTGAAGTTTGGTGCAAGTCTCTCTGCACCTATTAAAA
2161 AGTGATGTATATACTTCCTTCTTATTCTGTTGAGTTGTATAGAATTGTCTTTTGTATTTAACACTTTGTAATTTTCACAA
2241 TATTTTTTAATTTAAATAAATAAACACATTTTTTCCCTCCTGGGAAGTCATGAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acaUGUCGUCCGU-----GUCUGUcc 5'
             || | ||| |     ||||||  
Target 5' aggACTGAAGGAAAGAGGCAGACAcc 3'
1268 - 1293 130.00 -10.62
2
miRNA  3' acAUGUCGUCCGUGUCUGUCc 5'
            || || : | | |||||| 
Target 5' ctTAGAGAGAGGAAAGACAGt 3'
42 - 62 127.00 -12.70
3
miRNA  3' acaUGUCGUCCGUGUCUGUCc 5'
             | :|||  | |||:|:| 
Target 5' agaAGGGCATACTCAGGCGGa 3'
908 - 928 122.00 -14.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN5789416 9 COSMIC
COSN30132930 15 COSMIC
COSN30534201 17 COSMIC
COSN31511619 22 COSMIC
COSN28812831 29 COSMIC
COSN26981000 49 COSMIC
COSN30158090 94 COSMIC
COSN5865551 95 COSMIC
COSN20045935 96 COSMIC
COSN20056032 97 COSMIC
COSN30537978 124 COSMIC
COSN8985777 145 COSMIC
COSN30528950 146 COSMIC
COSN30122585 217 COSMIC
COSN8608697 226 COSMIC
COSN15624717 293 COSMIC
COSN30166891 309 COSMIC
COSN30121040 368 COSMIC
COSN15624718 506 COSMIC
COSN15624719 507 COSMIC
COSN1827744 526 COSMIC
COSN15624720 540 COSMIC
COSN30142573 573 COSMIC
COSN30174287 638 COSMIC
COSN15624721 700 COSMIC
COSN31516981 787 COSMIC
COSN21876593 828 COSMIC
COSN30130439 872 COSMIC
COSN31483792 895 COSMIC
COSN1827745 934 COSMIC
COSN25784306 959 COSMIC
COSN15624722 970 COSMIC
COSN15624723 1074 COSMIC
COSN30127273 1092 COSMIC
COSN5498506 1100 COSMIC
COSN30127740 1110 COSMIC
COSN30114311 1226 COSMIC
COSN30169617 1242 COSMIC
COSN15624724 1285 COSMIC
COSN8558461 1313 COSMIC
COSN30113423 1315 COSMIC
COSN30127926 1341 COSMIC
COSN26958178 1387 COSMIC
COSN30512158 1403 COSMIC
COSN31961796 1426 COSMIC
COSN15624725 1480 COSMIC
COSN30538149 1497 COSMIC
COSN30117239 1498 COSMIC
COSN5498507 1507 COSMIC
COSN6171523 1607 COSMIC
COSN30159351 1779 COSMIC
COSN31608535 1829 COSMIC
COSN20097868 1830 COSMIC
COSN30120572 1834 COSMIC
COSN31541713 1921 COSMIC
COSN31538014 2046 COSMIC
COSN26139683 2049 COSMIC
COSN30142125 2087 COSMIC
COSN30510921 2113 COSMIC
COSN30526940 2190 COSMIC
COSN20756867 2214 COSMIC
COSN30124280 2249 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1459628017 1 dbSNP
rs1163059273 3 dbSNP
rs1393096098 5 dbSNP
rs765585996 6 dbSNP
rs753126328 7 dbSNP
rs1324729315 8 dbSNP
rs1402469079 9 dbSNP
rs377692676 10 dbSNP
rs1355238977 12 dbSNP
rs778191198 13 dbSNP
rs1285621907 16 dbSNP
rs10189762 20 dbSNP
rs745521315 21 dbSNP
rs769637545 25 dbSNP
rs775272763 27 dbSNP
rs928146897 28 dbSNP
rs1217269047 30 dbSNP
rs749147601 31 dbSNP
rs768469154 37 dbSNP
rs1474121369 38 dbSNP
rs1189741651 39 dbSNP
rs1354003292 41 dbSNP
rs774189539 43 dbSNP
rs761758179 45 dbSNP
rs1158205808 52 dbSNP
rs1382954193 53 dbSNP
rs1204568278 54 dbSNP
rs980926236 61 dbSNP
rs1449172454 65 dbSNP
rs746551663 68 dbSNP
rs1174489028 70 dbSNP
rs1385386169 71 dbSNP
rs935447224 72 dbSNP
rs112332678 76 dbSNP
rs1393365673 87 dbSNP
rs988315454 91 dbSNP
rs1428835847 92 dbSNP
rs912955978 94 dbSNP
rs1424877227 95 dbSNP
rs925079321 101 dbSNP
rs1470369221 103 dbSNP
rs1156291193 107 dbSNP
rs1364244861 114 dbSNP
rs936494608 116 dbSNP
rs1449610311 125 dbSNP
rs776220796 134 dbSNP
rs1270756139 137 dbSNP
rs761346750 139 dbSNP
rs947137639 143 dbSNP
rs1488081928 146 dbSNP
rs538015032 152 dbSNP
rs1225478249 154 dbSNP
rs1351496381 158 dbSNP
rs1274735994 175 dbSNP
rs1231735179 191 dbSNP
rs900192878 208 dbSNP
rs1333380717 210 dbSNP
rs1304126371 211 dbSNP
rs1399845217 212 dbSNP
rs41311845 224 dbSNP
rs1342712683 225 dbSNP
rs1401901723 226 dbSNP
rs933240882 232 dbSNP
rs768106036 235 dbSNP
rs1006932394 240 dbSNP
rs1431438775 241 dbSNP
rs1199859873 242 dbSNP
rs1477378909 245 dbSNP
rs772025046 247 dbSNP
rs1218249029 248 dbSNP
rs569628261 252 dbSNP
rs1277973933 259 dbSNP
rs1198841695 265 dbSNP
rs898612664 270 dbSNP
rs3795885 273 dbSNP
rs1338946197 279 dbSNP
rs1267999118 281 dbSNP
rs1432435320 284 dbSNP
rs1345464084 291 dbSNP
rs1332930764 292 dbSNP
rs1412311841 294 dbSNP
rs1408129596 295 dbSNP
rs1177071417 298 dbSNP
rs3795884 303 dbSNP
rs1316275791 312 dbSNP
rs1004641384 321 dbSNP
rs951572525 344 dbSNP
rs1216361322 347 dbSNP
rs1287926283 356 dbSNP
rs1014724736 358 dbSNP
rs992400795 361 dbSNP
rs188176314 367 dbSNP
rs1462715209 371 dbSNP
rs1489813225 375 dbSNP
rs1198598284 382 dbSNP
rs1198385267 388 dbSNP
rs899234286 408 dbSNP
rs994906433 412 dbSNP
rs1275521394 421 dbSNP
rs1215597036 436 dbSNP
rs1025262519 437 dbSNP
rs1023623608 443 dbSNP
rs1268537788 446 dbSNP
rs115902079 447 dbSNP
rs982383913 455 dbSNP
rs1449746018 462 dbSNP
rs1384399624 467 dbSNP
rs1337254485 490 dbSNP
rs1035647055 497 dbSNP
rs956956021 501 dbSNP
rs980490719 512 dbSNP
rs924994849 513 dbSNP
rs1398074275 517 dbSNP
rs1172264196 518 dbSNP
rs988284604 522 dbSNP
rs915434585 544 dbSNP
rs762222661 549 dbSNP
rs936442406 550 dbSNP
rs1413260249 556 dbSNP
rs548560709 558 dbSNP
rs987895395 559 dbSNP
rs1243801340 569 dbSNP
rs1178153193 573 dbSNP
rs796134663 573 dbSNP
rs1235162513 582 dbSNP
rs1205588430 586 dbSNP
rs933189893 587 dbSNP
rs1405829319 594 dbSNP
rs1052114456 608 dbSNP
rs1400656908 609 dbSNP
rs968442366 610 dbSNP
rs910494624 614 dbSNP
rs41313545 620 dbSNP
rs1299820444 626 dbSNP
rs1442614528 649 dbSNP
rs1349115000 650 dbSNP
rs72550204 652 dbSNP
rs556199695 656 dbSNP
rs576175666 660 dbSNP
rs911783054 666 dbSNP
rs1158114522 667 dbSNP
rs1345766958 673 dbSNP
rs545185764 681 dbSNP
rs1178311543 693 dbSNP
rs1488330235 693 dbSNP
rs1245320550 706 dbSNP
rs887269034 713 dbSNP
rs1013776315 726 dbSNP
rs1036136654 729 dbSNP
rs899032883 736 dbSNP
rs1025634103 747 dbSNP
rs1238708266 750 dbSNP
rs1371932635 754 dbSNP
rs969679309 759 dbSNP
rs1224253364 768 dbSNP
rs1366876471 768 dbSNP
rs1223821706 778 dbSNP
rs1406609711 779 dbSNP
rs1002253333 782 dbSNP
rs41313547 784 dbSNP
rs1451667030 786 dbSNP
rs1357169135 789 dbSNP
rs957750196 791 dbSNP
rs1159984685 794 dbSNP
rs572368937 796 dbSNP
rs1045596413 802 dbSNP
rs763278485 810 dbSNP
rs905284216 813 dbSNP
rs1034740670 815 dbSNP
rs1003924563 820 dbSNP
rs1035035571 821 dbSNP
rs954528051 829 dbSNP
rs540673567 832 dbSNP
rs987351916 844 dbSNP
rs1215972975 848 dbSNP
rs1231368072 865 dbSNP
rs956923067 867 dbSNP
rs1009851143 870 dbSNP
rs1469738546 874 dbSNP
rs1311523466 880 dbSNP
rs1281308204 884 dbSNP
rs1225052279 890 dbSNP
rs1022462319 891 dbSNP
rs1179323338 895 dbSNP
rs41314655 896 dbSNP
rs1289520726 897 dbSNP
rs1443252147 898 dbSNP
rs151224140 899 dbSNP
rs1163357446 902 dbSNP
rs968244199 906 dbSNP
rs1406768058 909 dbSNP
rs975607434 910 dbSNP
rs1423327738 918 dbSNP
rs943320598 925 dbSNP
rs1426361286 926 dbSNP
rs1263477766 927 dbSNP
rs766741919 933 dbSNP
rs1482643602 946 dbSNP
rs921644881 953 dbSNP
rs953171055 956 dbSNP
rs919914697 970 dbSNP
rs750426341 971 dbSNP
rs987520456 972 dbSNP
rs911583304 973 dbSNP
rs529417937 976 dbSNP
rs1225055186 977 dbSNP
rs549224833 984 dbSNP
rs1296579210 994 dbSNP
rs887225488 994 dbSNP
rs1395460067 999 dbSNP
rs1353535905 1000 dbSNP
rs751786137 1003 dbSNP
rs72550205 1004 dbSNP
rs1400295131 1013 dbSNP
rs1036271570 1019 dbSNP
rs1380491527 1020 dbSNP
rs41314657 1020 dbSNP
rs1245078786 1022 dbSNP
rs531790503 1024 dbSNP
rs1358257192 1025 dbSNP
rs1443431676 1028 dbSNP
rs41313557 1044 dbSNP
rs1184946951 1045 dbSNP
rs1162637476 1047 dbSNP
rs1249804463 1047 dbSNP
rs1252060503 1047 dbSNP
rs1244306577 1052 dbSNP
rs1357606190 1055 dbSNP
rs1032585800 1064 dbSNP
rs1271219372 1066 dbSNP
rs1437461111 1067 dbSNP
rs1044918072 1070 dbSNP
rs1199356397 1073 dbSNP
rs1376733009 1082 dbSNP
rs1327438193 1097 dbSNP
rs905252313 1112 dbSNP
rs1240042152 1113 dbSNP
rs1397689490 1115 dbSNP
rs1003653631 1117 dbSNP
rs1293364565 1129 dbSNP
rs72550206 1130 dbSNP
rs1009226629 1139 dbSNP
rs1020652799 1147 dbSNP
rs796558265 1148 dbSNP
rs1179614483 1156 dbSNP
rs753890072 1157 dbSNP
rs1474005595 1158 dbSNP
rs1489916473 1182 dbSNP
rs910402846 1184 dbSNP
rs1223226606 1190 dbSNP
rs557800097 1205 dbSNP
rs1353110585 1210 dbSNP
rs1278248007 1216 dbSNP
rs1241781749 1225 dbSNP
rs1056464915 1230 dbSNP
rs892502909 1234 dbSNP
rs1465755018 1238 dbSNP
rs1403551617 1239 dbSNP
rs1363268088 1240 dbSNP
rs1332803472 1242 dbSNP
rs757125547 1243 dbSNP
rs571646781 1246 dbSNP
rs1156343762 1263 dbSNP
rs931295690 1275 dbSNP
rs1457982731 1285 dbSNP
rs982790618 1286 dbSNP
rs1364368650 1287 dbSNP
rs968334593 1290 dbSNP
rs1198345128 1291 dbSNP
rs778815191 1293 dbSNP
rs908589832 1295 dbSNP
rs1028511869 1297 dbSNP
rs1282209650 1302 dbSNP
rs1207043496 1303 dbSNP
rs527962387 1318 dbSNP
rs1352016591 1320 dbSNP
rs949515005 1323 dbSNP
rs111403314 1333 dbSNP
rs1046971814 1338 dbSNP
rs1269309712 1353 dbSNP
rs1338996953 1356 dbSNP
rs1219427814 1358 dbSNP
rs1260111311 1362 dbSNP
rs551632971 1374 dbSNP
rs866397566 1379 dbSNP
rs189817522 1380 dbSNP
rs938201548 1386 dbSNP
rs961726358 1392 dbSNP
rs536212725 1393 dbSNP
rs1385493265 1394 dbSNP
rs1257552525 1395 dbSNP
rs1467990513 1399 dbSNP
rs181463579 1402 dbSNP
rs1444628523 1403 dbSNP
rs7561445 1413 dbSNP
rs1240642759 1415 dbSNP
rs1009151655 1425 dbSNP
rs764741265 1426 dbSNP
rs186773181 1433 dbSNP
rs939422410 1439 dbSNP
rs1202353811 1441 dbSNP
rs368882684 1442 dbSNP
rs892553956 1460 dbSNP
rs558777214 1462 dbSNP
rs945323342 1469 dbSNP
rs1008658958 1474 dbSNP
rs1338277378 1475 dbSNP
rs1268046792 1485 dbSNP
rs1468890850 1485 dbSNP
rs1365317098 1486 dbSNP
rs1450323570 1492 dbSNP
rs1172653867 1493 dbSNP
rs1043762637 1494 dbSNP
rs964576054 1496 dbSNP
rs571927255 1497 dbSNP
rs572404941 1497 dbSNP
rs116696122 1498 dbSNP
rs950616650 1499 dbSNP
rs1280387929 1504 dbSNP
rs982758071 1504 dbSNP
rs1244304597 1505 dbSNP
rs1343858290 1509 dbSNP
rs111373883 1510 dbSNP
rs1204181550 1513 dbSNP
rs1436458693 1522 dbSNP
rs1270381447 1542 dbSNP
rs1215935993 1547 dbSNP
rs554820473 1556 dbSNP
rs1313735754 1557 dbSNP
rs1243218756 1562 dbSNP
rs908554929 1574 dbSNP
rs1169445748 1576 dbSNP
rs1303364076 1592 dbSNP
rs1441162479 1593 dbSNP
rs1352568253 1594 dbSNP
rs1330703074 1597 dbSNP
rs868623750 1601 dbSNP
rs1410740994 1602 dbSNP
rs1028898870 1603 dbSNP
rs891329543 1604 dbSNP
rs10208429 1614 dbSNP
rs926738601 1618 dbSNP
rs542961010 1639 dbSNP
rs1177156670 1644 dbSNP
rs1469094927 1645 dbSNP
rs1234926054 1650 dbSNP
rs1205750329 1651 dbSNP
rs1483173914 1652 dbSNP
rs1290600546 1653 dbSNP
rs1219539742 1655 dbSNP
rs1018609739 1656 dbSNP
rs938185317 1658 dbSNP
rs961777546 1660 dbSNP
rs971681279 1661 dbSNP
rs562887231 1669 dbSNP
rs1027346180 1672 dbSNP
rs894020780 1673 dbSNP
rs952041476 1676 dbSNP
rs10172380 1677 dbSNP
rs1426571331 1683 dbSNP
rs1350515679 1689 dbSNP
rs545228475 1697 dbSNP
rs1198970320 1702 dbSNP
rs1378814239 1704 dbSNP
rs1399465384 1705 dbSNP
rs1410882868 1707 dbSNP
rs1315450794 1712 dbSNP
rs1480318711 1712 dbSNP
rs1267686309 1713 dbSNP
rs939157824 1715 dbSNP
rs1490752664 1723 dbSNP
rs1265486233 1726 dbSNP
rs1214526189 1730 dbSNP
rs1451583440 1731 dbSNP
rs201828992 1746 dbSNP
rs1228735538 1752 dbSNP
rs1344658408 1754 dbSNP
rs1361062845 1759 dbSNP
rs1406956434 1762 dbSNP
rs527847819 1764 dbSNP
rs913956493 1765 dbSNP
rs945464118 1767 dbSNP
rs1451744574 1768 dbSNP
rs1347396140 1770 dbSNP
rs1363946761 1775 dbSNP
rs1160598448 1779 dbSNP
rs994634603 1781 dbSNP
rs1043730182 1784 dbSNP
rs1179085430 1787 dbSNP
rs1481211558 1793 dbSNP
rs1267628145 1794 dbSNP
rs1185363646 1796 dbSNP
rs1484623914 1797 dbSNP
rs200412977 1800 dbSNP
rs950586236 1803 dbSNP
rs977215218 1808 dbSNP
rs932891286 1811 dbSNP
rs1050049985 1812 dbSNP
rs983354748 1814 dbSNP
rs1321359656 1817 dbSNP
rs1452512918 1817 dbSNP
rs36085083 1817 dbSNP
rs891375717 1822 dbSNP
rs1309255841 1830 dbSNP
rs73991945 1831 dbSNP
rs1024666439 1833 dbSNP
rs970750203 1835 dbSNP
rs1426415988 1836 dbSNP
rs1209619675 1839 dbSNP
rs1008317788 1842 dbSNP
rs1015732398 1846 dbSNP
rs897560854 1848 dbSNP
rs982554902 1852 dbSNP
rs926693642 1854 dbSNP
rs993234927 1855 dbSNP
rs1250926083 1864 dbSNP
rs1225489374 1865 dbSNP
rs1490091297 1871 dbSNP
rs768222699 1875 dbSNP
rs780667065 1882 dbSNP
rs547793058 1883 dbSNP
rs951782766 1888 dbSNP
rs1339303747 1904 dbSNP
rs1396924819 1906 dbSNP
rs567911900 1914 dbSNP
rs1396196506 1917 dbSNP
rs542306369 1919 dbSNP
rs923134813 1920 dbSNP
rs1372082665 1921 dbSNP
rs1168610937 1926 dbSNP
rs868866950 1928 dbSNP
rs1443488811 1938 dbSNP
rs1383263504 1940 dbSNP
rs1460710042 1941 dbSNP
rs1424378461 1942 dbSNP
rs1249521370 1944 dbSNP
rs960624387 1944 dbSNP
rs989582825 1949 dbSNP
rs1484152675 1953 dbSNP
rs915421700 1958 dbSNP
rs1221789547 1959 dbSNP
rs991971330 1964 dbSNP
rs529662599 1965 dbSNP
rs966772997 1972 dbSNP
rs1317310444 1976 dbSNP
rs1246122421 1980 dbSNP
rs1335752803 1986 dbSNP
rs979576986 1987 dbSNP
rs1042644212 1989 dbSNP
rs925274124 1994 dbSNP
rs561995551 1995 dbSNP
rs879109033 1996 dbSNP
rs34008338 2006 dbSNP
rs1423406785 2008 dbSNP
rs1380911851 2027 dbSNP
rs1164536373 2031 dbSNP
rs1441394333 2034 dbSNP
rs748740211 2040 dbSNP
rs1179328873 2049 dbSNP
rs1161455809 2051 dbSNP
rs1473467880 2052 dbSNP
rs1384324008 2055 dbSNP
rs1050199437 2059 dbSNP
rs1252748021 2062 dbSNP
rs770170272 2063 dbSNP
rs1457618756 2071 dbSNP
rs944355733 2083 dbSNP
rs569808936 2085 dbSNP
rs538723610 2086 dbSNP
rs150082374 2088 dbSNP
rs773732196 2089 dbSNP
rs1259489845 2100 dbSNP
rs574039235 2103 dbSNP
rs1241576563 2104 dbSNP
rs1037149058 2107 dbSNP
rs1283103482 2113 dbSNP
rs749639972 2114 dbSNP
rs1378312535 2124 dbSNP
rs1386858442 2127 dbSNP
rs565904449 2132 dbSNP
rs1384107508 2133 dbSNP
rs1242890949 2139 dbSNP
rs1257996264 2150 dbSNP
rs771368779 2155 dbSNP
rs1156763025 2163 dbSNP
rs1458800485 2165 dbSNP
rs72548792 2167 dbSNP
rs1175520708 2173 dbSNP
rs1479568985 2176 dbSNP
rs993205262 2190 dbSNP
rs41311847 2193 dbSNP
rs1260201988 2199 dbSNP
rs887530788 2201 dbSNP
rs1211107274 2215 dbSNP
rs553514370 2226 dbSNP
rs1003505392 2228 dbSNP
rs1034114229 2241 dbSNP
rs397897368 2243 dbSNP
rs41313549 2243 dbSNP
rs72548787 2243 dbSNP
rs1276255165 2249 dbSNP
rs773733489 2249 dbSNP
rs41311849 2263 dbSNP
rs915348078 2265 dbSNP
rs960596796 2267 dbSNP
rs1437183755 2268 dbSNP
rs561998983 2269 dbSNP
rs912110376 2269 dbSNP
rs978675682 2269 dbSNP
rs190526737 2280 dbSNP
rs1020794124 2291 dbSNP
rs966575132 2292 dbSNP
rs1384498244 2293 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067869. RNA binding protein: AGO2. Condition:Ago2 IP-seq (asynchronous cells) HITS-CLIP data was present in GSM1067870. RNA binding protein: AGO2. Condition:Ago2 IP-seq (mitotic cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760639. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP-MDV_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acaugucguccgugUCUGUCc 5'
                        |||||| 
Target 5' ------------uaAGACAGa 3'
1 - 9
Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_080671 | 3UTR | UUAAGACAGAAUCUCGCUCUGUUGCCCAGGCUGGAGUGCAGUGGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_080671 | 3UTR | AGAAUCUCGCUCUGUUGCCCAGGCUGGAGUGCAGUGGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_080671 | 3UTR | AGACAGAAUCUCGCUCUGUUGCCCAGGCUGGAGUGCAGUGGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1067869
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (asynchronous cells)
Location of target site ENST00000281830.3 | 3UTR | ACAGAAUCUCGCUCUGUUGCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1067870
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (mitotic cells)
Location of target site ENST00000281830.3 | 3UTR | ACAGAAUCUCGCUCUGUUGCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-3120-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT096972 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT442624 LOX lysyl oxidase 2 2
MIRT473438 MDM4 MDM4, p53 regulator 2 2
MIRT490011 KIFC2 kinesin family member C2 2 2
MIRT496449 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496752 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT497721 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT498287 PADI3 peptidyl arginine deiminase 3 2 2
MIRT503195 ACVR1B activin A receptor type 1B 2 4
MIRT504760 TEP1 telomerase associated protein 1 2 4
MIRT517810 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT519686 ZNF622 zinc finger protein 622 2 4
MIRT520263 URGCP upregulator of cell proliferation 2 2
MIRT523051 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT525601 OLR1 oxidized low density lipoprotein receptor 1 2 4
MIRT526995 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528699 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT533142 WNT10A Wnt family member 10A 2 2
MIRT537618 ERI1 exoribonuclease 1 2 2
MIRT539707 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539752 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT539808 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT539941 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT540424 FAM83F family with sequence similarity 83 member F 2 2
MIRT540509 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540720 GUF1 GUF1 homolog, GTPase 2 2
MIRT541630 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT542286 POLR3K RNA polymerase III subunit K 2 2
MIRT542456 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542550 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542771 PPAP2B phospholipid phosphatase 3 2 2
MIRT550085 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT551458 CARKD NAD(P)HX dehydratase 2 2
MIRT555622 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT569136 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT572328 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574607 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT575583 Mcm8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT576125 Hrk harakiri, BCL2 interacting protein (contains only BH3 domain) 2 5
MIRT576657 Fam216a family with sequence similarity 216, member A 2 2
MIRT607222 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607292 CD300E CD300e molecule 2 6
MIRT607746 ANGPT4 angiopoietin 4 2 2
MIRT607905 SPRYD4 SPRY domain containing 4 2 2
MIRT608159 HRK harakiri, BCL2 interacting protein 2 7
MIRT608657 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT609115 ZNF703 zinc finger protein 703 2 6
MIRT610231 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT610870 NUDCD3 NudC domain containing 3 2 2
MIRT611217 MC2R melanocortin 2 receptor 2 2
MIRT614858 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT616966 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT617258 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT618009 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT619067 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619295 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619348 GINM1 glycoprotein integral membrane 1 2 2
MIRT619362 CFHR5 complement factor H related 5 2 2
MIRT619541 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT619782 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT619994 NPAP1 nuclear pore associated protein 1 2 2
MIRT621030 CDC14B cell division cycle 14B 2 2
MIRT622033 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622728 PITPNM3 PITPNM family member 3 2 2
MIRT623144 NAV2 neuron navigator 2 2 2
MIRT623600 IPO9 importin 9 2 2
MIRT624608 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT624905 CTCFL CCCTC-binding factor like 2 2
MIRT625030 SPC24 SPC24, NDC80 kinetochore complex component 2 2
MIRT625688 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 5
MIRT626531 EMCN endomucin 2 2
MIRT627204 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT628033 LSAMP limbic system-associated membrane protein 2 2
MIRT628203 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT631012 LINS lines homolog 1 2 2
MIRT633195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633890 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT634023 MOB4 MOB family member 4, phocein 2 2
MIRT634416 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636866 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT642527 ANKRD9 ankyrin repeat domain 9 2 2
MIRT645408 FAM110A family with sequence similarity 110 member A 2 2
MIRT645635 SYTL4 synaptotagmin like 4 2 2
MIRT646013 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT646686 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT652838 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT655156 PHF21B PHD finger protein 21B 2 2
MIRT658491 EXOC7 exocyst complex component 7 2 2
MIRT659398 CORO2A coronin 2A 2 2
MIRT666825 PRCP prolylcarboxypeptidase 2 2
MIRT666866 POU2F2 POU class 2 homeobox 2 2 2
MIRT668224 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit 2 2
MIRT673288 PDE3A phosphodiesterase 3A 2 2
MIRT673878 KLF2 Kruppel like factor 2 2 2
MIRT681721 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 2
MIRT682406 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT684109 MCM10 minichromosome maintenance 10 replication initiation factor 2 2
MIRT684423 TUFT1 tuftelin 1 2 2
MIRT684684 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT686638 TMEM184C transmembrane protein 184C 2 2
MIRT689457 NXN nucleoredoxin 2 2
MIRT689627 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT690773 PLA2G2C phospholipase A2 group IIC 2 2
MIRT690822 SGSM2 small G protein signaling modulator 2 2 2
MIRT693669 MXRA7 matrix remodeling associated 7 2 2
MIRT695553 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695872 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT698160 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT699933 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT708639 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT710816 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT711242 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT711542 MSH3 mutS homolog 3 2 2
MIRT711749 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712303 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT712922 RPF2 ribosome production factor 2 homolog 2 2
MIRT714027 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714768 TERF1 telomeric repeat binding factor 1 2 2
MIRT714844 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715223 NPVF neuropeptide VF precursor 2 2
MIRT716110 GMPS guanine monophosphate synthase 2 2
MIRT716174 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716383 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT716527 KSR2 kinase suppressor of ras 2 2 2
MIRT716962 P2RY6 pyrimidinergic receptor P2Y6 2 2
MIRT717605 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717696 PTGS1 prostaglandin-endoperoxide synthase 1 2 2
MIRT721360 ENTHD1 ENTH domain containing 1 2 2
MIRT721381 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721935 RASSF2 Ras association domain family member 2 2 2
MIRT722094 SUSD1 sushi domain containing 1 2 2
MIRT722837 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT722990 TOR1A torsin family 1 member A 2 2
MIRT724174 ABCF2 ATP binding cassette subfamily F member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3120-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3120-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-3120-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

Error report submission