pre-miRNA Information
pre-miRNA hsa-mir-3160-1   
Genomic Coordinates chr11: 46451805 - 46451889
Description Homo sapiens miR-3160-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3160-2   
Genomic Coordinates chr11: 46451807 - 46451887
Description Homo sapiens miR-3160-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3160-3p
Sequence 54| AGAGCUGAGACUAGAAAGCCCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30582333 1 COSMIC
COSN1535547 3 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396368683 1 dbSNP
rs1162409303 2 dbSNP
rs1404378453 12 dbSNP
rs1171960732 14 dbSNP
rs1324633375 16 dbSNP
rs1187765019 16 dbSNP
rs1300058326 19 dbSNP
rs1432898407 21 dbSNP
rs1011279103 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TFCP2   
Synonyms LBP1C, LSF, LSF1D, SEF, TFCP2C
Description transcription factor CP2
Transcript NM_001173452   
Other Transcripts NM_001173453 , NM_005653   
Expression
Putative miRNA Targets on TFCP2
3'UTR of TFCP2
(miRNA target sites are highlighted)
>TFCP2|NM_001173452|3'UTR
   1 GAGTGCGGCGTTTCGTGCCCAGTGGCTGCTCCTTCCTTCACCTCTGAAAACGGCCCTCTTGAAGGGGGATATGAATGGAG
  81 ATTTGAAGGTCTGCAAGAACCTGACTCGTCTGACTGTGTGTGGAGGAGTCCAGGCCATGGAGGCAGAATCCTGGCCCTCT
 161 GTGTTGGCCCAAGCTCTTGTGGTACACACAGATTACTGCCCAATATGCAGTTCTGCAGCTGTTTTAGTTAAATTTCTGGA
 241 CCTTGTTGTTGTTAAATATCAGTAGAAACTCTACATAATTTAGAGTGTATGTAGGGCATAATGATGATGGGAATTGTGTG
 321 ATGTTTAACAGGAAGATCTTAAATTTTGTGATATGGAGCCCTGTAATTTTTTTCTTATATAAAAATGGGTATCTATATTC
 401 ATAAGACTAGGTCTTCAATCTCTTTGTACTGGTCTCAAATGTACTGGTATCTCTGCTTTTTGCCACAGTTTGTCCCTGAA
 481 AACTTTATCAGTGAGGAGAAATACAGAATTTTCCTTTTGGTTCCCCTGTAATACCACAACTAATAGTATTTTCAGCTAAC
 561 ATTTATTGACCAGGCAGTGTGATAAATTTTTTGAATGACCATCTTGTTTAACCCCCTAATCACACTATCTGAAGTAGGTG
 641 CTATAGTGACCCCCAACCGAAGATGAGGAAATGGAGACACACAGTGGCTAAGTAGCTTGCTAGGTGCCAGGAGCTGGCAG
 721 GCAGTGATGCTGAAATCCAAACCAGGCAATCTGGCCCTCCTTATTCACCCTCTCATACCACCAGTGCTACCCATTATAAC
 801 CTGTGTTCACTTCGCTTATTACTGTGGCCCTTCTGGTGACTACAACATAACACTGAGTATGAACTGAGGAATTAACCACT
 881 GAAAGAGACAAAGCACACCTAAATAATGATGAACAAATCAAGACCTACAAGAAATGAACACATAGATGCTTTTTAAGTGT
 961 CATTAGTTATCGGAATCAAAGAATTTGAGGTGGTGACAACTGGGGATTATCTGTAACTCCCCAAATTTACTGTTCTTGAA
1041 TGACATTCTCAAACTATTTATTAATGAGTTAGTCTCATCCCTGCTTTCTGTTTCCTCTCTCTGCATCTTCTCTTGGCATA
1121 GGAAGTTATTTTACTCATGCTATGTTTTTTAATAGAAGCTTTACAAAAAAAGATGCATTCCCTTCCTGTTCACACTCTTA
1201 CCATGTTTTTGTTCTTCCTTAAGAATGATTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGTGTAAGTGTAACATCATGGGT
1281 TTTCTTTCTTCACTTGTAAAGTTTTATCTAGAAATACTTTTACAGGTTATGTTGAGGTACACAAAGATAATGTTCTAAGA
1361 TTGTGTATTGGATTTGGATTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAAAGCATTTGATAAGGTTTAAATGTTTTTTA
1441 TACAGAGATTTTTGTTCATTAAACTCAATCTGCATCATGGTCTAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acccgaaagAUCAGAGUCGAga 5'
                   || |:||||||  
Target 5' aactaatagTATTTTCAGCTaa 3'
538 - 559 133.00 -10.50
2
miRNA  3' acCCGA--AAGAUCAGAGUCGAGa 5'
            ||||  | ||   :||| ||| 
Target 5' gtGGCTGCTCCTTCCTTCACCTCt 3'
22 - 45 122.00 -11.80
3
miRNA  3' accCGAAAGAU---CAG-AGUCGAga 5'
             |||||:||   ||| |:||:|  
Target 5' gatGCTTTTTAAGTGTCATTAGTTat 3'
945 - 970 119.00 -11.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30168660 10 COSMIC
COSN511114 14 COSMIC
COSN30762615 22 COSMIC
COSN31561155 36 COSMIC
COSN28844736 47 COSMIC
COSN30108367 51 COSMIC
COSN31537329 52 COSMIC
COSN30469867 56 COSMIC
COSN31508448 62 COSMIC
COSN30453197 77 COSMIC
COSN30188111 131 COSMIC
COSN30463077 133 COSMIC
COSN30156711 146 COSMIC
COSN30462709 150 COSMIC
COSN31494405 150 COSMIC
COSN31492334 156 COSMIC
COSN29881915 270 COSMIC
COSN31960787 319 COSMIC
COSN5323812 343 COSMIC
COSN7373342 389 COSMIC
COSN16482471 449 COSMIC
COSN17182731 485 COSMIC
COSN19079032 1247 COSMIC
COSN9083712 1380 COSMIC
COSN1575857 1482 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs753576379 4 dbSNP
rs765918219 6 dbSNP
rs766595712 7 dbSNP
rs1257737226 8 dbSNP
rs376088787 9 dbSNP
rs374011337 10 dbSNP
rs762414959 13 dbSNP
rs1330672853 14 dbSNP
rs13463 15 dbSNP
rs1441263674 23 dbSNP
rs764289389 27 dbSNP
rs762915349 29 dbSNP
rs1156666813 31 dbSNP
rs1401317431 32 dbSNP
rs920004072 35 dbSNP
rs1357451162 38 dbSNP
rs1325548414 40 dbSNP
rs775819471 41 dbSNP
rs1415011905 43 dbSNP
rs375659087 46 dbSNP
rs1460066508 51 dbSNP
rs565046141 52 dbSNP
rs550119637 56 dbSNP
rs1412835864 67 dbSNP
rs923903025 68 dbSNP
rs978070282 69 dbSNP
rs970735031 70 dbSNP
rs111734413 71 dbSNP
rs187038891 81 dbSNP
rs917996885 95 dbSNP
rs868196221 100 dbSNP
rs540021876 102 dbSNP
rs987437940 104 dbSNP
rs1199410724 108 dbSNP
rs955635939 113 dbSNP
rs1273247054 123 dbSNP
rs779034344 123 dbSNP
rs1176544921 128 dbSNP
rs988942721 131 dbSNP
rs957574241 137 dbSNP
rs1032499299 139 dbSNP
rs979228951 145 dbSNP
rs142693978 150 dbSNP
rs1034617860 154 dbSNP
rs754154382 158 dbSNP
rs1282061333 159 dbSNP
rs1446748164 163 dbSNP
rs1291817644 165 dbSNP
rs1005431154 167 dbSNP
rs952616691 172 dbSNP
rs1467440186 174 dbSNP
rs527824255 183 dbSNP
rs1399939973 187 dbSNP
rs1387741902 188 dbSNP
rs761286782 199 dbSNP
rs35923616 202 dbSNP
rs1023312649 203 dbSNP
rs1329913187 204 dbSNP
rs1013473779 208 dbSNP
rs1231854405 215 dbSNP
rs1320633629 217 dbSNP
rs1456005413 224 dbSNP
rs1319544455 238 dbSNP
rs1388507912 239 dbSNP
rs1196299700 242 dbSNP
rs1166353054 254 dbSNP
rs1488660191 256 dbSNP
rs896404965 264 dbSNP
rs548333968 273 dbSNP
rs761857802 273 dbSNP
rs900862789 275 dbSNP
rs559487557 281 dbSNP
rs1198241393 286 dbSNP
rs1025604083 287 dbSNP
rs1424493055 290 dbSNP
rs1181361245 291 dbSNP
rs993991212 296 dbSNP
rs1007065098 303 dbSNP
rs1244085049 305 dbSNP
rs1458714470 309 dbSNP
rs889937016 316 dbSNP
rs898362597 320 dbSNP
rs1038845471 326 dbSNP
rs1190232624 332 dbSNP
rs1463414257 335 dbSNP
rs1299358453 354 dbSNP
rs111386630 357 dbSNP
rs548939004 358 dbSNP
rs942819743 374 dbSNP
rs1054364171 379 dbSNP
rs1216286569 386 dbSNP
rs889757212 391 dbSNP
rs1051110529 417 dbSNP
rs749910938 418 dbSNP
rs1214315515 420 dbSNP
rs936890489 421 dbSNP
rs1287056562 426 dbSNP
rs913484314 429 dbSNP
rs529162517 442 dbSNP
rs949366849 443 dbSNP
rs181622826 445 dbSNP
rs926160477 449 dbSNP
rs1261264021 451 dbSNP
rs543404024 465 dbSNP
rs1167335711 467 dbSNP
rs867485736 476 dbSNP
rs1457721952 483 dbSNP
rs867074424 486 dbSNP
rs1327162010 487 dbSNP
rs1443670962 493 dbSNP
rs1023681934 495 dbSNP
rs577717822 509 dbSNP
rs1397473925 521 dbSNP
rs960392588 523 dbSNP
rs1421882694 525 dbSNP
rs994114353 542 dbSNP
rs1167007115 553 dbSNP
rs148478321 554 dbSNP
rs1247107624 555 dbSNP
rs1019716474 558 dbSNP
rs1194041235 580 dbSNP
rs1351470991 583 dbSNP
rs1214542517 593 dbSNP
rs1006601947 595 dbSNP
rs12820966 602 dbSNP
rs1244942027 603 dbSNP
rs1254369341 604 dbSNP
rs1444336833 615 dbSNP
rs1179706684 617 dbSNP
rs774113375 625 dbSNP
rs1053574041 634 dbSNP
rs1220146758 638 dbSNP
rs190749380 641 dbSNP
rs1276321006 642 dbSNP
rs1359177023 643 dbSNP
rs74858542 645 dbSNP
rs1007353261 653 dbSNP
rs1447207546 656 dbSNP
rs949648566 658 dbSNP
rs530043215 659 dbSNP
rs1051656509 660 dbSNP
rs933985884 675 dbSNP
rs938062259 676 dbSNP
rs909286923 688 dbSNP
rs1236990656 689 dbSNP
rs984898537 700 dbSNP
rs1199657423 701 dbSNP
rs1240479218 717 dbSNP
rs931122375 742 dbSNP
rs144582898 745 dbSNP
rs1177066340 749 dbSNP
rs73301942 757 dbSNP
rs1434376389 759 dbSNP
rs1053276495 760 dbSNP
rs1442998179 768 dbSNP
rs1356418415 784 dbSNP
rs10876135 788 dbSNP
rs186391129 792 dbSNP
rs1445819729 798 dbSNP
rs926079457 813 dbSNP
rs1165458168 824 dbSNP
rs1044571820 830 dbSNP
rs570508947 842 dbSNP
rs775165532 843 dbSNP
rs916323503 844 dbSNP
rs138560035 845 dbSNP
rs1000597975 847 dbSNP
rs960345482 850 dbSNP
rs918277282 851 dbSNP
rs972619019 853 dbSNP
rs1021083396 855 dbSNP
rs962667874 873 dbSNP
rs1013759294 879 dbSNP
rs375151371 887 dbSNP
rs1190604574 893 dbSNP
rs1480672068 896 dbSNP
rs1421046504 903 dbSNP
rs1409130022 917 dbSNP
rs1324006513 919 dbSNP
rs1006722841 922 dbSNP
rs117056593 927 dbSNP
rs954048541 928 dbSNP
rs1292881109 929 dbSNP
rs1482497990 932 dbSNP
rs1344889070 935 dbSNP
rs1029690108 936 dbSNP
rs1055421623 939 dbSNP
rs937992589 942 dbSNP
rs147064959 943 dbSNP
rs529089719 953 dbSNP
rs1291113478 954 dbSNP
rs1049146765 960 dbSNP
rs745840612 962 dbSNP
rs777805351 971 dbSNP
rs772195110 972 dbSNP
rs1268841909 1005 dbSNP
rs918383921 1007 dbSNP
rs563555209 1008 dbSNP
rs1195272156 1015 dbSNP
rs139083808 1016 dbSNP
rs1163606784 1029 dbSNP
rs972568546 1036 dbSNP
rs1376179954 1043 dbSNP
rs1286479060 1044 dbSNP
rs541759917 1050 dbSNP
rs1376258338 1066 dbSNP
rs1315067496 1073 dbSNP
rs1162806793 1078 dbSNP
rs779121536 1079 dbSNP
rs912465620 1087 dbSNP
rs948900391 1088 dbSNP
rs1324895863 1090 dbSNP
rs1430208293 1093 dbSNP
rs1285011892 1099 dbSNP
rs1358866884 1129 dbSNP
rs1357283597 1139 dbSNP
rs10099 1142 dbSNP
rs1419545387 1144 dbSNP
rs1414126281 1146 dbSNP
rs1179341683 1150 dbSNP
rs1471953029 1151 dbSNP
rs1031978894 1154 dbSNP
rs6580786 1155 dbSNP
rs780312226 1158 dbSNP
rs1445929142 1172 dbSNP
rs966443305 1174 dbSNP
rs1482070462 1176 dbSNP
rs1238872220 1186 dbSNP
rs1471659649 1190 dbSNP
rs1182802576 1191 dbSNP
rs1255835124 1194 dbSNP
rs1216930611 1204 dbSNP
rs1380840173 1210 dbSNP
rs1421501167 1211 dbSNP
rs1156791488 1215 dbSNP
rs939099133 1218 dbSNP
rs1020697177 1221 dbSNP
rs1400229614 1224 dbSNP
rs1335047739 1225 dbSNP
rs1342542221 1229 dbSNP
rs1450867406 1230 dbSNP
rs918223631 1230 dbSNP
rs1242872985 1231 dbSNP
rs1266738599 1231 dbSNP
rs1278298446 1232 dbSNP
rs541057397 1233 dbSNP
rs1227885478 1238 dbSNP
rs1200555152 1240 dbSNP
rs1280268762 1241 dbSNP
rs896677010 1243 dbSNP
rs149396253 1249 dbSNP
rs11550089 1250 dbSNP
rs1315114581 1251 dbSNP
rs10694278 1255 dbSNP
rs1176661806 1255 dbSNP
rs1238502120 1255 dbSNP
rs1240187345 1255 dbSNP
rs12578749 1255 dbSNP
rs1363181534 1255 dbSNP
rs1404608704 1255 dbSNP
rs141914311 1255 dbSNP
rs1441320673 1255 dbSNP
rs201968128 1255 dbSNP
rs57805403 1255 dbSNP
rs12578748 1256 dbSNP
rs1320821959 1257 dbSNP
rs145381387 1257 dbSNP
rs774517652 1257 dbSNP
rs202194838 1259 dbSNP
rs772920595 1261 dbSNP
rs1043051800 1263 dbSNP
rs1199651263 1263 dbSNP
rs1249699297 1263 dbSNP
rs1452171194 1263 dbSNP
rs1458890446 1263 dbSNP
rs903205031 1263 dbSNP
rs1379382952 1264 dbSNP
rs1175923277 1269 dbSNP
rs887751673 1269 dbSNP
rs765378067 1271 dbSNP
rs1418035979 1272 dbSNP
rs58309379 1273 dbSNP
rs181047041 1276 dbSNP
rs1040520483 1277 dbSNP
rs1255011628 1291 dbSNP
rs1187504422 1293 dbSNP
rs1466491243 1296 dbSNP
rs1403826376 1300 dbSNP
rs1278417314 1301 dbSNP
rs909794645 1305 dbSNP
rs1246741189 1307 dbSNP
rs59057776 1308 dbSNP
rs1250603549 1320 dbSNP
rs576564276 1323 dbSNP
rs1211492994 1329 dbSNP
rs1266721909 1336 dbSNP
rs763747869 1338 dbSNP
rs1198852389 1339 dbSNP
rs1264132062 1342 dbSNP
rs953886076 1345 dbSNP
rs1168619348 1356 dbSNP
rs1336099133 1357 dbSNP
rs1372802026 1357 dbSNP
rs1267364396 1360 dbSNP
rs1165459484 1361 dbSNP
rs1364309338 1365 dbSNP
rs1242667244 1366 dbSNP
rs1423425993 1368 dbSNP
rs924917291 1382 dbSNP
rs932601822 1382 dbSNP
rs199809425 1383 dbSNP
rs979061115 1388 dbSNP
rs1296510719 1390 dbSNP
rs200897941 1394 dbSNP
rs966389497 1402 dbSNP
rs74689767 1404 dbSNP
rs796305429 1406 dbSNP
rs10542898 1408 dbSNP
rs1184963319 1408 dbSNP
rs1221837429 1408 dbSNP
rs1261327839 1408 dbSNP
rs1286756618 1408 dbSNP
rs139118081 1408 dbSNP
rs1486892928 1408 dbSNP
rs34059685 1408 dbSNP
rs56033133 1408 dbSNP
rs564689893 1408 dbSNP
rs751765207 1408 dbSNP
rs763322329 1408 dbSNP
rs869305023 1408 dbSNP
rs913637996 1408 dbSNP
rs556385974 1413 dbSNP
rs775318658 1420 dbSNP
rs1397528138 1439 dbSNP
rs1312734813 1440 dbSNP
rs1381786546 1443 dbSNP
rs754370486 1444 dbSNP
rs1240700211 1468 dbSNP
rs998190632 1470 dbSNP
rs1311414414 1472 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067870. RNA binding protein: AGO2. Condition:Ago2 IP-seq (mitotic cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acccGAAAGAUCAGAGUC-GAGa 5'
              ||| | |  ||| | ||| 
Target 5' ---aCUUGC-AACCUCUGCCUC- 3'
1 - 18
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
CLIP-seq Support 1 for dataset GSM1067870
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (mitotic cells)
Location of target site ENST00000257915.5 | 3UTR | ACUUGCAACCUCUGCCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
118 hsa-miR-3160-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066658 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT075318 SF3B3 splicing factor 3b subunit 3 2 4
MIRT077083 EIF1 eukaryotic translation initiation factor 1 2 2
MIRT100381 HSPA1B heat shock protein family A (Hsp70) member 1B 2 6
MIRT135259 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT184913 ZNF268 zinc finger protein 268 2 2
MIRT218862 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT446580 FPR2 formyl peptide receptor 2 2 2
MIRT448834 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT449455 RNF13 ring finger protein 13 2 2
MIRT452284 CARD8 caspase recruitment domain family member 8 2 2
MIRT452628 FAM162A family with sequence similarity 162 member A 2 2
MIRT453454 GLG1 golgi glycoprotein 1 2 2
MIRT454188 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454434 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454575 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT455555 TRAF1 TNF receptor associated factor 1 2 6
MIRT455841 MPL MPL proto-oncogene, thrombopoietin receptor 2 6
MIRT455969 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT456805 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457320 DUSP19 dual specificity phosphatase 19 2 2
MIRT457366 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457684 ZNF587 zinc finger protein 587 2 2
MIRT458158 LYRM4 LYR motif containing 4 2 6
MIRT458641 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459134 FADS6 fatty acid desaturase 6 2 2
MIRT459153 NARF nuclear prelamin A recognition factor 2 4
MIRT460460 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460974 STK17B serine/threonine kinase 17b 2 2
MIRT461439 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT461507 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT462490 GSR glutathione-disulfide reductase 2 2
MIRT462638 PHF5A PHD finger protein 5A 2 2
MIRT463279 ZFX zinc finger protein, X-linked 2 2
MIRT463360 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT465777 TMOD3 tropomodulin 3 2 2
MIRT466143 TMEM120B transmembrane protein 120B 2 2
MIRT468401 SETD3 SET domain containing 3 2 2
MIRT468998 RNPS1 RNA binding protein with serine rich domain 1 2 2
MIRT471574 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT472108 NME2 NME/NM23 nucleoside diphosphate kinase 2 2 2
MIRT472125 NME1-NME2 NME1-NME2 readthrough 2 2
MIRT473020 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT473083 MORN4 MORN repeat containing 4 2 2
MIRT475598 HMGB2 high mobility group box 2 2 4
MIRT475937 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476117 GPR157 G protein-coupled receptor 157 2 2
MIRT476406 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT478003 DNAL1 dynein axonemal light chain 1 2 2
MIRT487969 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT489418 TUBB2A tubulin beta 2A class IIa 2 2
MIRT491522 IL10RA interleukin 10 receptor subunit alpha 2 2
MIRT492673 PLEC plectin 2 2
MIRT493545 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT513085 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT514009 CECR2 CECR2, histone acetyl-lysine reader 2 4
MIRT516683 ZNF860 zinc finger protein 860 2 2
MIRT518392 ZNF250 zinc finger protein 250 2 2
MIRT522683 LUZP1 leucine zipper protein 1 2 6
MIRT524488 CEP97 centrosomal protein 97 2 2
MIRT527457 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT527705 IL17REL interleukin 17 receptor E like 2 2
MIRT531647 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT532381 UMPS uridine monophosphate synthetase 2 2
MIRT532588 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT533555 TPM4 tropomyosin 4 2 2
MIRT548371 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 4
MIRT550250 PVR poliovirus receptor 2 2
MIRT552555 ZFP36L2 ZFP36 ring finger protein like 2 2 4
MIRT554113 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT554131 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT561344 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT561638 RUNX3 runt related transcription factor 3 2 2
MIRT566497 PBX2P1 PBX homeobox 2 pseudogene 1 2 2
MIRT570583 OTUD7B OTU deubiquitinase 7B 2 2
MIRT572731 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT574041 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT575231 Fut1 fucosyltransferase 1 2 2
MIRT606811 BICD2 BICD cargo adaptor 2 2 2
MIRT621016 CLSTN3 calsyntenin 3 2 2
MIRT637852 PDCL3 phosducin like 3 2 2
MIRT640477 ZNF557 zinc finger protein 557 2 2
MIRT642827 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT643887 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT664874 PCNXL2 pecanex homolog 2 2 2
MIRT680528 PRIM2 DNA primase subunit 2 2 2
MIRT680648 KIAA1456 KIAA1456 2 2
MIRT680807 ZNF578 zinc finger protein 578 2 2
MIRT680921 STX2 syntaxin 2 2 2
MIRT681112 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT681147 INTS7 integrator complex subunit 7 2 2
MIRT681966 TFCP2 transcription factor CP2 2 2
MIRT684316 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT684906 GSG2 histone H3 associated protein kinase 2 2
MIRT685499 MED16 mediator complex subunit 16 2 2
MIRT685929 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686875 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688204 FNIP1 folliculin interacting protein 1 2 2
MIRT688791 CCNB1 cyclin B1 2 2
MIRT689227 RPS19 ribosomal protein S19 2 2
MIRT690470 ZNF33A zinc finger protein 33A 2 2
MIRT691982 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 2 2
MIRT694006 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694529 TRIM72 tripartite motif containing 72 2 2
MIRT695420 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695784 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT697799 UBXN2A UBX domain protein 2A 2 2
MIRT698275 TMEM2 transmembrane protein 2 2 2
MIRT698317 TMEM136 transmembrane protein 136 2 2
MIRT699971 RREB1 ras responsive element binding protein 1 2 2
MIRT700717 PNO1 partner of NOB1 homolog 2 2
MIRT701721 MTMR12 myotubularin related protein 12 2 2
MIRT701879 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT702959 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT706178 ZNF716 zinc finger protein 716 2 2
MIRT706463 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT718154 TTC33 tetratricopeptide repeat domain 33 2 2
MIRT718711 ANKRD18A ankyrin repeat domain 18A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3160-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3160-3p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-3160-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3160-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

Error report submission