miRTarBase - #MIRT682481


—
pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol LIX1L   
Synonyms -
Description limb and CNS expressed 1 like
Transcript NM_153713   
Expression
Putative miRNA Targets on LIX1L
3'UTR of LIX1L
(miRNA target sites are highlighted)		 
>LIX1L|NM_153713|3'UTR
   1 GCATCCACCCACATAACTCCCCAGGCTTTCCACAGCCTTTTTTTATGTCTCCTTTCTAAGATTTAGGATGATTTTTTGTA
  81 CATACTTTCTCATTTTTATACTTTAAAAAATATATATGTGTATAAATTCTACACCTAGATTCCTATTTGCTAAGAGATCC
 161 CTTTTCTTACTACCAGTTTTTGGATGTAGTTTTATTTGAAACATCTTCAGTCCACTTTACAACAAAGAGCAGCTTGTCTT
 241 TGCAGCTTTGTTAGCTCTTAAACTTCCAGATTAACTGTGTAGCCATTTCAGTAGCACTAAAAGATTAACTCTAGTGTTCA
 321 TGTGTCCTTCTTTTCAAATATCAGGTAACTTGAATAAGGATTATGTGCCCCACCCTTACTCTCATTCCTGCTTCCTCTTG
 401 GACTCAAACAGGGTATGAGTATGAAGATTTTGCCTTTAGTTCCTGAACTGAACCTGCTTGCTATCCCTTTCCTCCCCACC
 481 ACTACCTTATTCCTTCTCTGCCTCCAAATTGCCACTTTGTTTTGAGGCTTCCTTCCCTACCTTATTATTCTGAAGGAAGT
 561 AGAGATCTTGCTTCTGAAACCCCTCCTAAGAAACTGCCCAGGGACAAGATAAATTACAAACAATTCATGGGAGTTTACTA
 641 CCTAAGTTGCTTCTAGGGCATATGTATACCATACTAGTAGTCTAGATTTCTGGATATACTCTACAGTAGATGGGGGTTAT
 721 GGTTGAAACTGATTCTCTTTCAGTATTCCCTCTAAACATCTCCCCTACTCCCCCAGCTTAGTTAAACCCTGCGTTTGGAC
 801 CTTCCTGCCTGCAGCTATTAGTAGAAAGTAAAACATATTTCCATATTTCCCTTCACCTAACATTTTATTTTTTGGAAGCG
 881 TTATCAGTCCTATTTGGTTAGTGAGAACCATGTTCCCCTTATTCCCGCTAAGTTGCTGCTGTTTACTACCTTAGATTCTC
 961 ATTTGTTTTCTCTTTCTTTCCTCTCCTTCCACATTAATTATTAGAACATAAGTTGATCAGGAAAATTAAATGAGACTTTA
1041 GTATTTTGGCACTTCCTAATTGACACCTTGGGAGACTGCAGGAAGGGAAAGAGAATCAATGATCAGTTATTTGTGTGTGT
1121 GTGTGGTTTTTTTTTTTTTTTGGAAGACAGAGTCTCACACTTTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCA
1201 CTGCAACCTCTGCCTCCAGGGTTCAAGCGATTCTCTTGCCTCAGCTTCCCGAGTAGCTGGGATTACAGGCACACGCCACA
1281 ACGCCTGGCTAATTTTTATATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGTTCTTGAACTCCTGACATAA
1361 GGTAATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGGCACTGAGCCTGGCCTATTTGTGGTTTTTT
1441 TTTGGTTTTGTTTTTGTTTTTGTTTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCTAGAGTGCAGTGGCGCGATCTCGG
1521 CTCACTGCAACCTCCGCCTCCCAGATTCACACCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCCAC
1601 CACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGACGGTCTCCATCTCCTGA
1681 CCTCGTGATCCACCTGCCTCGGCCTCCCAAACTATTTGTGTGTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCC
1761 CAGGCTGGAGTGCAGTGGCGCTATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCACTCTCCTGCCTCAGCCT
1841 CCTTAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCTGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACC
1921 GTGTTTGACAGGATGGTCTCGATTTCCTGACTTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGT
2001 GAGCCACCGCGCCCGGCACTATTTGTGTTTTTAACACCATTCTCCCCCACTTCTCTCCTGGGTGACATAAGAGAGAAATA
2081 ACCTGTAGTACAGCAGCTAAAGTATTCTCCTTTCAGAGAATTTTTTTGGAGGTCTCTAATATATATTTCCCCCTTGTCTC
2161 TGTGATCTCTTATTTATACTATATTATTGTCCCATGTACTTTCTAAACTGAGCTTGGAACATTTAGTATTCCTGCAATTG
2241 GACTTCCCACTTAACAATTATACAGACTTTGCTTTTAGAAATAGATTAGGTTCCAAACAGAAAGTTCAAGTGTAACAACA
2321 ACAATAAAAATAGATTATGAAACAGGCTATAATTGGCTCTTTTGGATTTGATAGGGGCAAGATGAAAGGCAACTTTCTTG
2401 CTTTTGAAATCATGTTGGGTAAGAGGTAAGGAATCCAGCTACAATTTTATTAGTGCTTGAAACGGGCTTCCTTGAATTCT
2481 CCAGGCCCTATCATTTTTTTTTTCTTACTAATCAGAAGAGAGCTGGGGTAGAAGCCCCATGTTTGTATTCCATGAAACAC
2561 GTCGGGTTGGAGTAAAGGCAAAAACAGCTAGACACACCAGGTGTGTCTGTTTGACATTTATAAGCTGGCACTCATCAACA
2641 CTCCTGTTTCTCCTTTCTCTGGGACGTGTGGATTAAGGGGTGTGAGTTGTGGGAAGAATTGCCCTCGTACCTCCTGGATT
2721 TATTATTTTTCTCAAATACCAACCAGTAAGATCCCAAATAACTTGAGAAAAATTGTTTCCTGATCTGTCCACTTCTGGTG
2801 TCAAAGATTTTACTCATCTTCTTAGTACATTCTATGTATTTTATATGTATAATTTTATACAATTAAAAATAGATTTTTGT
2881 CTAGTG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|: |||:  :| ||||||| 
Target 5' tgTCGCCCAGGCTAGAGTGCAGt 3'
 1485 - 1507 157.00 -21.80
2 
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|: |||:  :: ||||||| 
Target 5' tgTCGCCCAGGCTGGAGTGCAGt 3'
 1754 - 1776 153.00 -19.70
3 
miRNA  3' ucggucGGUUGAGUGUCACGUCu 5'
                |||:  :: ||||||| 
Target 5' ttttgcCCAGGCTGGAGTGCAGt 3'
 1161 - 1183 149.00 -16.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30589212 4 COSMIC
COSN30107513 16 COSMIC
COSN8891004 33 COSMIC
COSN31783848 35 COSMIC
COSN18724514 38 COSMIC
COSN30181958 44 COSMIC
COSN30103623 70 COSMIC
COSN30717764 104 COSMIC
COSN1088710 255 COSMIC
COSN8891005 405 COSMIC
COSN28154523 1116 COSMIC
COSN23935970 1512 COSMIC
COSN6001766 1535 COSMIC
COSN23968932 1749 COSMIC
COSN24509512 1767 COSMIC
COSN20842060 1962 COSMIC
COSN4743762 1989 COSMIC
COSN23505876 2120 COSMIC
COSN16439002 2455 COSMIC
COSN7175924 2486 COSMIC
COSN29536283 2493 COSMIC
COSN8891006 2733 COSMIC
COSN24957703 2789 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs782667986 4 dbSNP
rs782259053 5 dbSNP
rs782382419 11 dbSNP
rs781970878 13 dbSNP
rs1246733190 14 dbSNP
rs112390732 18 dbSNP
rs142228396 22 dbSNP
rs1263849585 38 dbSNP
rs782285183 38 dbSNP
rs1334475669 44 dbSNP
rs1199315148 45 dbSNP
rs1260131143 45 dbSNP
rs112462719 68 dbSNP
rs1456812438 68 dbSNP
rs1177199331 75 dbSNP
rs1257490668 78 dbSNP
rs1425866867 78 dbSNP
rs983887426 80 dbSNP
rs951305269 83 dbSNP
rs918531112 85 dbSNP
rs1185896244 87 dbSNP
rs976682293 90 dbSNP
rs966462468 97 dbSNP
rs1415161373 99 dbSNP
rs1460636438 104 dbSNP
rs1170753023 106 dbSNP
rs1401923755 111 dbSNP
rs1018920669 114 dbSNP
rs1460402653 120 dbSNP
rs1297475865 124 dbSNP
rs1007661061 125 dbSNP
rs782123088 144 dbSNP
rs782781954 149 dbSNP
rs781827229 150 dbSNP
rs1011118626 153 dbSNP
rs1219536954 157 dbSNP
rs587616491 173 dbSNP
rs1280166546 183 dbSNP
rs1316071388 200 dbSNP
rs892628597 213 dbSNP
rs1203931071 229 dbSNP
rs782104465 233 dbSNP
rs1257050099 236 dbSNP
rs1484544914 240 dbSNP
rs1199063659 241 dbSNP
rs1257322664 242 dbSNP
rs1474670061 243 dbSNP
rs1425337677 245 dbSNP
rs1426167236 250 dbSNP
rs1169170533 261 dbSNP
rs1359637834 264 dbSNP
rs1310831624 267 dbSNP
rs1374694870 276 dbSNP
rs587702598 287 dbSNP
rs1003781139 290 dbSNP
rs1300211810 293 dbSNP
rs1360162467 299 dbSNP
rs1214022407 314 dbSNP
rs587750449 315 dbSNP
rs1302121222 319 dbSNP
rs1314439062 321 dbSNP
rs1231783032 333 dbSNP
rs1044685036 334 dbSNP
rs1488785855 337 dbSNP
rs587674870 338 dbSNP
rs1219270462 340 dbSNP
rs587731811 345 dbSNP
rs1484710577 356 dbSNP
rs1185405700 357 dbSNP
rs1425329821 368 dbSNP
rs1434828886 373 dbSNP
rs1171608221 380 dbSNP
rs1394416372 388 dbSNP
rs146310957 390 dbSNP
rs782708922 412 dbSNP
rs1430340836 417 dbSNP
rs1294182862 419 dbSNP
rs909598034 422 dbSNP
rs1369908287 435 dbSNP
rs1438813920 437 dbSNP
rs587658296 440 dbSNP
rs1355079969 444 dbSNP
rs587739858 454 dbSNP
rs1242726903 457 dbSNP
rs929838288 458 dbSNP
rs918407745 465 dbSNP
rs1214712076 471 dbSNP
rs1246930130 478 dbSNP
rs1489141926 479 dbSNP
rs977091132 483 dbSNP
rs1252255445 486 dbSNP
rs1440283675 487 dbSNP
rs1160215464 498 dbSNP
rs1405596635 509 dbSNP
rs1400338506 515 dbSNP
rs1165669517 519 dbSNP
rs943939238 527 dbSNP
rs1351853571 540 dbSNP
rs1459900748 543 dbSNP
rs1325349482 559 dbSNP
rs1378265645 560 dbSNP
rs782007906 562 dbSNP
rs1449722456 575 dbSNP
rs1278142724 579 dbSNP
rs1372967908 581 dbSNP
rs1229263209 582 dbSNP
rs911888521 591 dbSNP
rs75599392 610 dbSNP
rs587645448 613 dbSNP
rs1272046865 623 dbSNP
rs1180507784 627 dbSNP
rs1231113013 632 dbSNP
rs1469389443 638 dbSNP
rs1182260876 646 dbSNP
rs751108530 649 dbSNP
rs1022421456 671 dbSNP
rs1474375742 703 dbSNP
rs1164283215 710 dbSNP
rs75539445 712 dbSNP
rs1467251403 725 dbSNP
rs1327371260 726 dbSNP
rs1354488946 730 dbSNP
rs587601711 735 dbSNP
rs1286364974 742 dbSNP
rs1356952436 743 dbSNP
rs1231137225 744 dbSNP
rs587661086 748 dbSNP
rs1317919373 775 dbSNP
rs1197055386 776 dbSNP
rs587741059 781 dbSNP
rs1270743693 785 dbSNP
rs1437203608 791 dbSNP
rs1031145270 792 dbSNP
rs368172891 793 dbSNP
rs370514168 802 dbSNP
rs1187405747 810 dbSNP
rs906753724 817 dbSNP
rs1424621646 825 dbSNP
rs1478815206 828 dbSNP
rs1166261368 832 dbSNP
rs1419387756 835 dbSNP
rs1415595019 841 dbSNP
rs587611328 843 dbSNP
rs1336545599 849 dbSNP
rs1023261303 861 dbSNP
rs1414559013 866 dbSNP
rs1311839755 872 dbSNP
rs1340771695 874 dbSNP
rs1228927137 879 dbSNP
rs587669161 880 dbSNP
rs1011908986 888 dbSNP
rs781853479 892 dbSNP
rs1338650207 895 dbSNP
rs1219807032 899 dbSNP
rs1282387153 903 dbSNP
rs200881220 910 dbSNP
rs1484533883 915 dbSNP
rs587742587 917 dbSNP
rs782514731 926 dbSNP
rs1448996945 927 dbSNP
rs1191085781 933 dbSNP
rs782594252 938 dbSNP
rs1241658556 942 dbSNP
rs1048153112 954 dbSNP
rs1176006904 956 dbSNP
rs782227707 957 dbSNP
rs929715817 963 dbSNP
rs1434442544 973 dbSNP
rs1159666108 976 dbSNP
rs1360736412 977 dbSNP
rs896990748 979 dbSNP
rs782055473 985 dbSNP
rs943954917 992 dbSNP
rs1325280960 997 dbSNP
rs782287052 998 dbSNP
rs985365790 1008 dbSNP
rs1345681113 1040 dbSNP
rs931999129 1040 dbSNP
rs915228637 1041 dbSNP
rs1353097798 1055 dbSNP
rs587624012 1060 dbSNP
rs989583197 1062 dbSNP
rs189490477 1076 dbSNP
rs1452195206 1078 dbSNP
rs1031597030 1082 dbSNP
rs1251639554 1084 dbSNP
rs1454256980 1086 dbSNP
rs982265137 1093 dbSNP
rs1365977698 1098 dbSNP
rs587733198 1110 dbSNP
rs200495069 1112 dbSNP
rs1156388092 1113 dbSNP
rs782599800 1114 dbSNP
rs1383816691 1118 dbSNP
rs1405401794 1121 dbSNP
rs1309711152 1126 dbSNP
rs1327378826 1126 dbSNP
rs1440154763 1126 dbSNP
rs781959265 1127 dbSNP
rs868937108 1127 dbSNP
rs1023877927 1128 dbSNP
rs782084814 1128 dbSNP
rs1236633532 1131 dbSNP
rs1260315917 1132 dbSNP
rs587652022 1134 dbSNP
rs1199743013 1142 dbSNP
rs1215607450 1142 dbSNP
rs60343221 1142 dbSNP
rs1417651174 1144 dbSNP
rs1181578450 1153 dbSNP
rs1362827683 1165 dbSNP
rs1475358896 1167 dbSNP
rs1166450239 1168 dbSNP
rs1391734120 1173 dbSNP
rs1298622483 1174 dbSNP
rs1398577611 1178 dbSNP
rs1389424478 1186 dbSNP
rs1306079868 1187 dbSNP
rs1341275540 1188 dbSNP
rs1235438354 1192 dbSNP
rs1291669060 1194 dbSNP
rs782683652 1195 dbSNP
rs1219349308 1196 dbSNP
rs1253555324 1197 dbSNP
rs1479966668 1201 dbSNP
rs1195567490 1202 dbSNP
rs1485792132 1207 dbSNP
rs1189543056 1211 dbSNP
rs1415233415 1213 dbSNP
rs1474568422 1216 dbSNP
rs1170576156 1217 dbSNP
rs1374698077 1218 dbSNP
rs1460450934 1228 dbSNP
rs587709441 1229 dbSNP
rs1375911219 1232 dbSNP
rs1416381514 1235 dbSNP
rs1311347405 1249 dbSNP
rs587774372 1250 dbSNP
rs1297753841 1251 dbSNP
rs1306284019 1269 dbSNP
rs1227253621 1274 dbSNP
rs1257091425 1275 dbSNP
rs1350573727 1283 dbSNP
rs1209146755 1284 dbSNP
rs1255006991 1307 dbSNP
rs1485115741 1319 dbSNP
rs1012433963 1326 dbSNP
rs1186611623 1327 dbSNP
rs1263145221 1334 dbSNP
rs1426218416 1335 dbSNP
rs1169729562 1339 dbSNP
rs1395592036 1340 dbSNP
rs1436402359 1341 dbSNP
rs1171481158 1343 dbSNP
rs888130429 1346 dbSNP
rs1431682229 1357 dbSNP
rs587657897 1361 dbSNP
rs587692341 1363 dbSNP
rs1381706063 1372 dbSNP
rs1304869003 1373 dbSNP
rs994328232 1375 dbSNP
rs1373787035 1378 dbSNP
rs896863285 1380 dbSNP
rs1279996332 1405 dbSNP
rs1346716046 1406 dbSNP
rs1216154290 1409 dbSNP
rs1262113879 1413 dbSNP
rs1484637096 1419 dbSNP
rs1185402394 1427 dbSNP
rs1253581629 1430 dbSNP
rs149552961 1431 dbSNP
rs1191529531 1434 dbSNP
rs1394179640 1434 dbSNP
rs113245989 1435 dbSNP
rs587720380 1435 dbSNP
rs889609593 1438 dbSNP
rs1326611090 1444 dbSNP
rs1343630730 1444 dbSNP
rs1453193175 1444 dbSNP
rs144289940 1445 dbSNP
rs1439264703 1450 dbSNP
rs1303131436 1451 dbSNP
rs1374585942 1453 dbSNP
rs1225813374 1455 dbSNP
rs1308750566 1462 dbSNP
rs1207583504 1469 dbSNP
rs1273206325 1469 dbSNP
rs1314725064 1469 dbSNP
rs1469769360 1471 dbSNP
rs780553369 1472 dbSNP
rs1252281627 1473 dbSNP
rs1470417039 1480 dbSNP
rs11804676 1482 dbSNP
rs1406098617 1485 dbSNP
rs1418670149 1498 dbSNP
rs587607423 1500 dbSNP
rs1165759972 1502 dbSNP
rs1396693144 1510 dbSNP
rs1459932803 1511 dbSNP
rs1325885629 1512 dbSNP
rs1355597720 1513 dbSNP
rs1444857131 1516 dbSNP
rs1296762788 1518 dbSNP
rs1370744904 1519 dbSNP
rs1227327721 1526 dbSNP
rs587655286 1531 dbSNP
rs1336384544 1534 dbSNP
rs1230900238 1535 dbSNP
rs587712283 1536 dbSNP
rs1289108187 1541 dbSNP
rs1438282015 1543 dbSNP
rs1206386552 1545 dbSNP
rs1230903350 1547 dbSNP
rs1480430446 1551 dbSNP
rs1188998540 1555 dbSNP
rs1420268942 1559 dbSNP
rs1474292300 1565 dbSNP
rs1164257863 1568 dbSNP
rs1420881657 1570 dbSNP
rs1412079976 1572 dbSNP
rs1327276344 1574 dbSNP
rs1354389273 1575 dbSNP
rs1415767428 1585 dbSNP
rs1313162357 1587 dbSNP
rs587609811 1594 dbSNP
rs587665266 1596 dbSNP
rs587749355 1597 dbSNP
rs587600175 1598 dbSNP
rs587678208 1599 dbSNP
rs1283036368 1602 dbSNP
rs1340004177 1604 dbSNP
rs587730201 1605 dbSNP
rs1216184762 1611 dbSNP
rs587647666 1611 dbSNP
rs1270786933 1612 dbSNP
rs1341262235 1628 dbSNP
rs1211299520 1629 dbSNP
rs1259915127 1630 dbSNP
rs1484787187 1632 dbSNP
rs1186951565 1636 dbSNP
rs1242710436 1639 dbSNP
rs1476430316 1640 dbSNP
rs1166721625 1643 dbSNP
rs587703209 1649 dbSNP
rs1419398240 1651 dbSNP
rs1435772751 1654 dbSNP
rs1175875587 1657 dbSNP
rs1376918753 1660 dbSNP
rs1432413738 1664 dbSNP
rs1332933583 1665 dbSNP
rs1326567819 1685 dbSNP
rs1432268441 1695 dbSNP
rs1268389336 1700 dbSNP
rs587760293 1701 dbSNP
rs1234782578 1703 dbSNP
rs1282127823 1709 dbSNP
rs1200163060 1714 dbSNP
rs587633554 1717 dbSNP
rs1191073824 1722 dbSNP
rs1247984287 1723 dbSNP
rs1455047603 1724 dbSNP
rs59404796 1724 dbSNP
rs1195907876 1725 dbSNP
rs1393583338 1727 dbSNP
rs1171691574 1728 dbSNP
rs1338554730 1728 dbSNP
rs1232232977 1731 dbSNP
rs1267520547 1737 dbSNP
rs1469306221 1737 dbSNP
rs1216166882 1741 dbSNP
rs1251661388 1748 dbSNP
rs1182937830 1749 dbSNP
rs1433015031 1749 dbSNP
rs1470927872 1750 dbSNP
rs1156327910 1757 dbSNP
rs1410672555 1758 dbSNP
rs1461498515 1762 dbSNP
rs1327901871 1767 dbSNP
rs782626817 1779 dbSNP
rs1386037882 1780 dbSNP
rs1329238146 1781 dbSNP
rs781941523 1782 dbSNP
rs1335607950 1783 dbSNP
rs1271866323 1787 dbSNP
rs1488415195 1788 dbSNP
rs1196761808 1791 dbSNP
rs1253019717 1792 dbSNP
rs1436429071 1799 dbSNP
rs1179645316 1800 dbSNP
rs1250586333 1804 dbSNP
rs1475272238 1805 dbSNP
rs1166415880 1807 dbSNP
rs375028886 1811 dbSNP
rs1457291964 1812 dbSNP
rs1168285235 1815 dbSNP
rs587643493 1819 dbSNP
rs1307708231 1820 dbSNP
rs1416729563 1821 dbSNP
rs1321651989 1824 dbSNP
rs1228880585 1825 dbSNP
rs1253584465 1834 dbSNP
rs1204848940 1835 dbSNP
rs180773954 1840 dbSNP
rs1250657278 1841 dbSNP
rs1049698470 1843 dbSNP
rs947265145 1844 dbSNP
rs1253376944 1846 dbSNP
rs1422721861 1856 dbSNP
rs915258396 1857 dbSNP
rs1193879942 1859 dbSNP
rs587759641 1860 dbSNP
rs935418333 1863 dbSNP
rs1167679515 1864 dbSNP
rs587654977 1865 dbSNP
rs1436750764 1868 dbSNP
rs1301316144 1870 dbSNP
rs1378611580 1873 dbSNP
rs982599085 1875 dbSNP
rs970941288 1879 dbSNP
rs1325160009 1880 dbSNP
rs916722085 1885 dbSNP
rs1281420566 1887 dbSNP
rs587710450 1892 dbSNP
rs1348160683 1901 dbSNP
rs991044203 1902 dbSNP
rs1253867460 1905 dbSNP
rs952930596 1907 dbSNP
rs1026609809 1909 dbSNP
rs587767742 1910 dbSNP
rs1447523861 1912 dbSNP
rs1187705424 1920 dbSNP
rs1455413983 1926 dbSNP
rs1358770784 1927 dbSNP
rs1454403304 1928 dbSNP
rs1290659851 1940 dbSNP
rs961326275 1941 dbSNP
rs1434923681 1944 dbSNP
rs1019388597 1952 dbSNP
rs1373717977 1954 dbSNP
rs1217806884 1955 dbSNP
rs1008374921 1956 dbSNP
rs1298789301 1959 dbSNP
rs1311207125 1961 dbSNP
rs587646439 1962 dbSNP
rs1208097743 1965 dbSNP
rs1049562711 1966 dbSNP
rs1469683356 1970 dbSNP
rs756087033 1971 dbSNP
rs1011508843 1976 dbSNP
rs1419833095 1979 dbSNP
rs1161380231 1982 dbSNP
rs1409936396 1989 dbSNP
rs893021428 1990 dbSNP
rs1327216772 1991 dbSNP
rs1434797400 1998 dbSNP
rs587719996 1999 dbSNP
rs368444805 2002 dbSNP
rs1224061505 2004 dbSNP
rs782298622 2007 dbSNP
rs1289824747 2008 dbSNP
rs587602532 2009 dbSNP
rs782776809 2010 dbSNP
rs372214586 2011 dbSNP
rs1273771697 2014 dbSNP
rs1219128521 2015 dbSNP
rs148730754 2016 dbSNP
rs1480833013 2021 dbSNP
rs1179231754 2025 dbSNP
rs1249862342 2025 dbSNP
rs1472326106 2040 dbSNP
rs949440047 2044 dbSNP
rs1165692544 2048 dbSNP
rs916753299 2057 dbSNP
rs1420675836 2060 dbSNP
rs1404030366 2064 dbSNP
rs990906890 2071 dbSNP
rs1164690271 2076 dbSNP
rs1355543704 2083 dbSNP
rs587704805 2089 dbSNP
rs1309515310 2099 dbSNP
rs1348197144 2114 dbSNP
rs587623312 2118 dbSNP
rs1293306559 2128 dbSNP
rs973381710 2132 dbSNP
rs200715395 2133 dbSNP
rs147722748 2136 dbSNP
rs80257969 2136 dbSNP
rs1453355660 2139 dbSNP
rs58891773 2139 dbSNP
rs61579111 2139 dbSNP
rs57979501 2140 dbSNP
rs1289044627 2142 dbSNP
rs1307907628 2150 dbSNP
rs754759694 2153 dbSNP
rs1272788080 2161 dbSNP
rs1482822317 2163 dbSNP
rs868970194 2164 dbSNP
rs1259785648 2165 dbSNP
rs782089485 2176 dbSNP
rs1019674843 2178 dbSNP
rs1181843383 2188 dbSNP
rs1420812499 2215 dbSNP
rs76470532 2220 dbSNP
rs1167047580 2236 dbSNP
rs1368330854 2237 dbSNP
rs587758534 2238 dbSNP
rs1313105450 2255 dbSNP
rs1341803975 2264 dbSNP
rs1028164201 2288 dbSNP
rs1283567064 2289 dbSNP
rs1362517283 2309 dbSNP
rs1230362927 2312 dbSNP
rs587637646 2321 dbSNP
rs1341194841 2333 dbSNP
rs1211942390 2344 dbSNP
rs1280974276 2347 dbSNP
rs115560724 2357 dbSNP
rs1031619142 2359 dbSNP
rs1209459746 2362 dbSNP
rs1243223241 2365 dbSNP
rs1451818739 2366 dbSNP
rs999152462 2376 dbSNP
rs1187075484 2380 dbSNP
rs1390016643 2384 dbSNP
rs1454970570 2392 dbSNP
rs782063621 2393 dbSNP
rs1173932774 2397 dbSNP
rs1403865052 2420 dbSNP
rs1412286659 2423 dbSNP
rs902522811 2441 dbSNP
rs1345725265 2447 dbSNP
rs1046793474 2453 dbSNP
rs16826967 2463 dbSNP
rs895273607 2464 dbSNP
rs185385807 2467 dbSNP
rs797023586 2481 dbSNP
rs1218735317 2482 dbSNP
rs587695195 2493 dbSNP
rs1466307945 2494 dbSNP
rs587757806 2494 dbSNP
rs868943208 2497 dbSNP
rs1207451827 2503 dbSNP
rs1201408890 2504 dbSNP
rs1469221453 2504 dbSNP
rs58671850 2504 dbSNP
rs1379025471 2507 dbSNP
rs1171487864 2510 dbSNP
rs868952935 2520 dbSNP
rs973028861 2524 dbSNP
rs1458341056 2525 dbSNP
rs1318508814 2528 dbSNP
rs940237984 2529 dbSNP
rs1441394802 2530 dbSNP
rs782058238 2531 dbSNP
rs1329568550 2532 dbSNP
rs372024521 2541 dbSNP
rs1436115326 2547 dbSNP
rs1280344440 2560 dbSNP
rs1268087015 2561 dbSNP
rs986425944 2563 dbSNP
rs1212014606 2564 dbSNP
rs782770924 2566 dbSNP
rs1451387534 2570 dbSNP
rs1197791447 2585 dbSNP
rs1252053865 2585 dbSNP
rs1473306945 2587 dbSNP
rs1028112028 2590 dbSNP
rs1156261037 2595 dbSNP
rs1411165770 2597 dbSNP
rs1458287957 2600 dbSNP
rs140642149 2601 dbSNP
rs1388384178 2607 dbSNP
rs1404524367 2609 dbSNP
rs1329839140 2613 dbSNP
rs1352516813 2613 dbSNP
rs957217827 2614 dbSNP
rs1408101573 2631 dbSNP
rs1287737532 2637 dbSNP
rs1031891773 2640 dbSNP
rs998788409 2662 dbSNP
rs1247707912 2664 dbSNP
rs1264183545 2665 dbSNP
rs782484123 2666 dbSNP
rs1196710934 2668 dbSNP
rs12078014 2672 dbSNP
rs781892503 2676 dbSNP
rs1179397320 2678 dbSNP
rs587770665 2684 dbSNP
rs895136628 2686 dbSNP
rs1423877922 2688 dbSNP
rs1055161398 2693 dbSNP
rs931373607 2706 dbSNP
rs782568344 2707 dbSNP
rs1168937592 2710 dbSNP
rs1372653680 2719 dbSNP
rs1427986361 2726 dbSNP
rs1307648503 2728 dbSNP
rs1403071134 2740 dbSNP
rs782634206 2745 dbSNP
rs1397830328 2763 dbSNP
rs587639046 2767 dbSNP
rs1228636364 2774 dbSNP
rs940289063 2778 dbSNP
rs1340478061 2781 dbSNP
rs912847012 2791 dbSNP
rs987044758 2796 dbSNP
rs1273440921 2797 dbSNP
rs1483313355 2798 dbSNP
rs1201630442 2806 dbSNP
rs1254022385 2813 dbSNP
rs1423110598 2813 dbSNP
rs587723203 2821 dbSNP
rs1188977876 2824 dbSNP
rs932336051 2824 dbSNP
rs1447417732 2826 dbSNP
rs1168248033 2829 dbSNP
rs1378384743 2832 dbSNP
rs1467668727 2845 dbSNP
rs587746589 2850 dbSNP
rs1402131209 2853 dbSNP
rs782465443 2858 dbSNP
rs1363531076 2862 dbSNP
rs1228083306 2866 dbSNP
rs989919777 2870 dbSNP
rs191350981 2879 dbSNP
rs1031504637 2886 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucggucgguugagugUCACGUCu 5'
                         ||||||| 
Target 5' -----------cuggAGUGCAGu 3'
 		1 - 12
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067870. RNA binding protein: AGO2. Condition:Ago2 IP-seq (mitotic cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucggucggUUGAGUGUCACGUCu 5'
                  ::|| : ||||||| 
Target 5' -------aGGCU-GGAGUGCAGu 3'
 		1 - 15
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000369308.3 | 3UTR | CUGGAGUGCAGUGGCGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1067870
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (mitotic cells)
Location of target site ENST00000369308.3 | 3UTR | AGGCUGGAGUGCAGUGGCGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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