pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PSMD9   
Synonyms Rpn4, p27
Description proteasome 26S subunit, non-ATPase 9
Transcript NM_002813   
Expression
Putative miRNA Targets on PSMD9
3'UTR of PSMD9
(miRNA target sites are highlighted)
>PSMD9|NM_002813|3'UTR
   1 TTGTCCCTGGGGAACAGTAACAGGAAAGCATCTTCCCTTGCCCTGGACTTGGGTCTAGGGATTTCCAACTTGTCTTCTCT
  81 CCCTGAAGCATAAGGATCTGGAAGAGGCTTGTAACCTGAACTTCTGTGTGGTGGCAGTACTGTGGCCCACCAGTGTAATC
 161 TCCCTGGATTAAGGCATTCTTAAAAACTTAGGCTTGGCCTCTTTCACAAATTAGGCCACGGCCCTAAATAGGAATTCCCT
 241 GGATTGTGGGCAAGTGGGCGGAAGTTATTCTGGCAGGTACTGGTGTGATTATTATTATTATTTTTAATAAAGAGTTTTAC
 321 AGTGCTGATATGACCCTGTTGTCACCCCAGCTGAATTTCTTATGACCCTCCCAAACCAAAGCTCAGATGGGGTCAGAAGA
 401 GCTTCATAGAAAGTTGGGCAAAACAGGCTAGCAATTGCAAAGTCAGGCTTTGACCAACATATTTCTTTGCACTGAGGCCT
 481 TGCTGCTGTGGATACGGAAATGGTTAAGTACTGTGCTTCCTCAGCAGCTGGGCTGTCAGGGCCATAGTAGCTCCCTTTGG
 561 AGAACAGGGAAAGCCTGGAGGCTTCCCAGGTGGCCCAGCGTGGTGTCCTGTCAGCTTCCTCTTTAGGAACCCACCAGAGG
 641 GCAGCAAGCTCCTTTCACTTCGCTAGTAAGAACCCCTCCGTTTTTGTGTGTTTTTGTTTTTGTTTTCTGGAGACAAGGTC
 721 TTGCTTTGTCACCCAGGCTGGAGTGCAGTGTCGTGATCAAGGTTCACTGAAGCCTTGACGCTGTGGGCACTGCCTCAGCC
 801 GCCCAAGTATCTGGGACCACAGGCGTGCACCACCATGCATAGCTAATTTATTTTTTGTAGAGACAGGGTCTCCCTGTGTT
 881 GACCAGGTTGGTCTCGAACTCCTGGGCTCAAGCAGTCCTCCTGCCTTGGCCTCCTAAAGTGCTGGGATCACAGGCGTGAG
 961 CCACTGCGCCCAGCCCACTGCTAGTTTGACTTTTTATAATTGAACCTCCTGGCTATGCCCTGAGATCAGCGCTATTTTGT
1041 AAACCGCTGAGGTATGGATAGGAACGAGTAGATCAGACCTCTTGAAAATGCTTATTCTTCCTCCCTTTTATTTTTTGTCT
1121 CTTTTAAGATGGTAAAATGGTTCTCAGGGATTCCTGCCAATACTTTGAATTATTTTTTCCTCTCCATGGTATCAGTGTTC
1201 ATTTCCCCAGTTCTTGCACACCGCTTTCTGTTTTGGCAGTTCTGCCAGGCAAGCCCTGTGTTCCTTGGGACTGGTTTTGC
1281 TGTGGTTGGATACAGATACCAGCTTGCCTTGATGGGATTGGTATTGCTGTGTGCTTCCAGCCACAGGTTCTCACACTCAA
1361 TTCCAAAGCCTTCCTATTGGGCGAATTCCCTCAAACTCTATTTGACCTGACAGCCATACGTATTCCCCTCTGGTAGCCAC
1441 AGACATGCTGTGTTTACCAATGTTTGCTGTTTAAATTGCATGTTCTAATTCCACGTATTTTCCAGTCTCTTTTATAAAGT
1521 CTCAGACTATAATAAACACAGCTTGCCCAGTTTAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|| |||:  :: ||||||| 
Target 5' tgTCACCCAGGCTGGAGTGCAGt 3'
727 - 749 157.00 -19.40
2
miRNA  3' ucggUCGGUUGAGUGUCACGUCu 5'
              | || || || || |||| 
Target 5' taggAACCCAC-CAGAGGGCAGc 3'
624 - 645 126.00 -12.40
3
miRNA  3' ucggucgguuGAGUGUCACGUCu 5'
                    :|:||||||| | 
Target 5' aataaagagtTTTACAGTGCTGa 3'
306 - 328 125.00 -15.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30107562 11 COSMIC
COSN26990753 18 COSMIC
COSN30183006 33 COSMIC
COSN31492260 48 COSMIC
COSN30192497 52 COSMIC
COSN30192479 53 COSMIC
COSN30147335 56 COSMIC
COSN30105053 73 COSMIC
COSN31592623 84 COSMIC
COSN17447397 149 COSMIC
COSN7313703 195 COSMIC
COSN5932918 582 COSMIC
COSN17969604 632 COSMIC
COSN25984838 802 COSMIC
COSN20110253 932 COSMIC
COSN26227209 1018 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1447728932 1 dbSNP
rs777359445 2 dbSNP
rs1198750764 5 dbSNP
rs1157019992 6 dbSNP
rs200207711 7 dbSNP
rs553228163 12 dbSNP
rs201745629 15 dbSNP
rs1225865707 17 dbSNP
rs780762107 24 dbSNP
rs971686639 28 dbSNP
rs1404742289 36 dbSNP
rs370191768 37 dbSNP
rs1367870027 38 dbSNP
rs1220444780 40 dbSNP
rs922006315 41 dbSNP
rs1316251112 42 dbSNP
rs373402172 43 dbSNP
rs142086448 44 dbSNP
rs775526435 45 dbSNP
rs1319755325 48 dbSNP
rs1489775548 49 dbSNP
rs1221485306 53 dbSNP
rs755895796 54 dbSNP
rs1194277832 65 dbSNP
rs557187231 66 dbSNP
rs1404699181 80 dbSNP
rs932184734 90 dbSNP
rs1337371646 91 dbSNP
rs1470911603 95 dbSNP
rs575543796 96 dbSNP
rs890587777 107 dbSNP
rs1169623177 126 dbSNP
rs1475876447 128 dbSNP
rs1374960743 132 dbSNP
rs551601737 135 dbSNP
rs1041941560 140 dbSNP
rs990271696 147 dbSNP
rs1417926790 148 dbSNP
rs1456782277 152 dbSNP
rs1257847986 156 dbSNP
rs1215486130 163 dbSNP
rs904214992 166 dbSNP
rs1271623836 167 dbSNP
rs1242148961 168 dbSNP
rs542956253 172 dbSNP
rs561143471 174 dbSNP
rs1041731085 182 dbSNP
rs891094952 187 dbSNP
rs2272134 188 dbSNP
rs1327970021 189 dbSNP
rs1410361621 191 dbSNP
rs1398335428 192 dbSNP
rs1161737486 194 dbSNP
rs1013967033 199 dbSNP
rs1444166331 203 dbSNP
rs1297309674 207 dbSNP
rs1185443376 216 dbSNP
rs3182919 219 dbSNP
rs771544882 219 dbSNP
rs138686848 220 dbSNP
rs1416518160 222 dbSNP
rs1205812532 225 dbSNP
rs951218218 228 dbSNP
rs1439982524 232 dbSNP
rs1288157893 237 dbSNP
rs1207701129 239 dbSNP
rs1293890729 245 dbSNP
rs1040054788 254 dbSNP
rs559198088 255 dbSNP
rs780566522 260 dbSNP
rs117351080 261 dbSNP
rs1353060480 262 dbSNP
rs1337315961 268 dbSNP
rs1321273227 275 dbSNP
rs1424290322 279 dbSNP
rs1205980706 280 dbSNP
rs973367549 284 dbSNP
rs1487541687 287 dbSNP
rs1004341337 288 dbSNP
rs1024661358 288 dbSNP
rs970825855 291 dbSNP
rs1245354158 313 dbSNP
rs980451747 316 dbSNP
rs551398110 342 dbSNP
rs1258912184 351 dbSNP
rs149241828 353 dbSNP
rs958946993 359 dbSNP
rs1282936294 364 dbSNP
rs932060149 369 dbSNP
rs1352694712 376 dbSNP
rs768948872 384 dbSNP
rs1272891216 385 dbSNP
rs530814813 386 dbSNP
rs987536383 395 dbSNP
rs912057653 408 dbSNP
rs777035361 424 dbSNP
rs1470289753 426 dbSNP
rs946220617 436 dbSNP
rs990284612 438 dbSNP
rs549342283 441 dbSNP
rs904770218 446 dbSNP
rs946151308 453 dbSNP
rs935692855 456 dbSNP
rs1159842997 458 dbSNP
rs1378234053 460 dbSNP
rs1423632569 474 dbSNP
rs1154517 489 dbSNP
rs567855841 493 dbSNP
rs894113698 496 dbSNP
rs115859371 497 dbSNP
rs564360897 498 dbSNP
rs1484655768 501 dbSNP
rs1024034232 504 dbSNP
rs547045947 510 dbSNP
rs1004036492 518 dbSNP
rs1016839188 544 dbSNP
rs921183789 547 dbSNP
rs1222806605 550 dbSNP
rs192528695 555 dbSNP
rs1197061520 563 dbSNP
rs1284883849 566 dbSNP
rs1332235505 568 dbSNP
rs1217052913 569 dbSNP
rs1337655419 600 dbSNP
rs770045817 601 dbSNP
rs975260507 605 dbSNP
rs1357481739 606 dbSNP
rs1336717195 613 dbSNP
rs536570491 620 dbSNP
rs876934 632 dbSNP
rs987976123 636 dbSNP
rs1168919373 644 dbSNP
rs751790706 649 dbSNP
rs1426398939 658 dbSNP
rs766401159 662 dbSNP
rs774278585 663 dbSNP
rs1236865500 675 dbSNP
rs759408160 680 dbSNP
rs1461665031 681 dbSNP
rs1281521076 685 dbSNP
rs911970515 687 dbSNP
rs1216535786 689 dbSNP
rs1296624071 689 dbSNP
rs1306676025 689 dbSNP
rs1377154939 691 dbSNP
rs946243336 694 dbSNP
rs767408997 697 dbSNP
rs906276406 698 dbSNP
rs12229068 700 dbSNP
rs1033271193 712 dbSNP
rs958958691 718 dbSNP
rs1011758495 722 dbSNP
rs1021811947 741 dbSNP
rs1170786836 746 dbSNP
rs926073349 748 dbSNP
rs1429854080 750 dbSNP
rs936246830 753 dbSNP
rs1056029928 754 dbSNP
rs575283132 755 dbSNP
rs894165901 769 dbSNP
rs912676619 777 dbSNP
rs1177618582 780 dbSNP
rs568247517 781 dbSNP
rs1251670025 789 dbSNP
rs965451396 794 dbSNP
rs137953667 795 dbSNP
rs58642707 801 dbSNP
rs1291171279 802 dbSNP
rs1045919227 804 dbSNP
rs1246853639 805 dbSNP
rs144414624 807 dbSNP
rs763791503 809 dbSNP
rs1391315065 818 dbSNP
rs931238042 822 dbSNP
rs59695002 825 dbSNP
rs866610149 826 dbSNP
rs540492191 831 dbSNP
rs1038168368 840 dbSNP
rs559352009 841 dbSNP
rs1424804032 843 dbSNP
rs1386546053 846 dbSNP
rs1398712108 851 dbSNP
rs1418362912 860 dbSNP
rs1046228223 864 dbSNP
rs898298389 865 dbSNP
rs1489783171 866 dbSNP
rs1159014572 884 dbSNP
rs1268507965 888 dbSNP
rs906278981 889 dbSNP
rs996730419 896 dbSNP
rs1028171118 897 dbSNP
rs953535171 902 dbSNP
rs1054735976 903 dbSNP
rs1317991982 904 dbSNP
rs36114040 930 dbSNP
rs397849921 930 dbSNP
rs1403536424 931 dbSNP
rs577820853 932 dbSNP
rs11385149 936 dbSNP
rs11448317 936 dbSNP
rs1302377093 940 dbSNP
rs869295075 940 dbSNP
rs1452993302 947 dbSNP
rs1312026865 950 dbSNP
rs185103785 956 dbSNP
rs756715479 957 dbSNP
rs967492586 958 dbSNP
rs977470115 961 dbSNP
rs926123713 962 dbSNP
rs957503035 968 dbSNP
rs79531339 969 dbSNP
rs778297471 970 dbSNP
rs1235849752 972 dbSNP
rs1259765993 982 dbSNP
rs1204586695 987 dbSNP
rs916151795 989 dbSNP
rs1469503279 992 dbSNP
rs530545894 1014 dbSNP
rs1323360432 1016 dbSNP
rs747534262 1018 dbSNP
rs368607295 1025 dbSNP
rs1284255271 1027 dbSNP
rs1193922663 1028 dbSNP
rs1332416921 1031 dbSNP
rs965860734 1033 dbSNP
rs1045398453 1035 dbSNP
rs549266907 1038 dbSNP
rs921332518 1046 dbSNP
rs1468103686 1047 dbSNP
rs1428352140 1055 dbSNP
rs1176821610 1056 dbSNP
rs1431287358 1057 dbSNP
rs1195234753 1066 dbSNP
rs908164341 1067 dbSNP
rs1192722180 1068 dbSNP
rs755548490 1070 dbSNP
rs1429258313 1077 dbSNP
rs939779675 1097 dbSNP
rs1263944755 1101 dbSNP
rs561050891 1102 dbSNP
rs952719228 1105 dbSNP
rs1264168564 1117 dbSNP
rs1205927885 1118 dbSNP
rs1038054765 1122 dbSNP
rs35204822 1122 dbSNP
rs1337829045 1127 dbSNP
rs1226231138 1139 dbSNP
rs186767023 1139 dbSNP
rs1326510674 1140 dbSNP
rs781508449 1146 dbSNP
rs1450381701 1147 dbSNP
rs996614477 1158 dbSNP
rs1405208373 1163 dbSNP
rs1049668745 1183 dbSNP
rs891044925 1192 dbSNP
rs1008524153 1197 dbSNP
rs982365400 1201 dbSNP
rs927794308 1210 dbSNP
rs1465053440 1211 dbSNP
rs1018956396 1223 dbSNP
rs748565011 1239 dbSNP
rs546489302 1240 dbSNP
rs1181780331 1247 dbSNP
rs1444596729 1256 dbSNP
rs1244346876 1267 dbSNP
rs998959009 1268 dbSNP
rs1033077008 1282 dbSNP
rs1272657521 1290 dbSNP
rs1194884694 1291 dbSNP
rs893548623 1303 dbSNP
rs114459208 1304 dbSNP
rs991647578 1307 dbSNP
rs770169672 1312 dbSNP
rs916186817 1317 dbSNP
rs999089269 1339 dbSNP
rs971675120 1342 dbSNP
rs901364996 1343 dbSNP
rs982065765 1361 dbSNP
rs908212960 1375 dbSNP
rs1161871066 1379 dbSNP
rs1424160705 1379 dbSNP
rs574555199 1383 dbSNP
rs1038106973 1384 dbSNP
rs191573913 1389 dbSNP
rs75933880 1392 dbSNP
rs75412527 1393 dbSNP
rs1182929916 1397 dbSNP
rs1221834806 1398 dbSNP
rs1253583982 1401 dbSNP
rs1264560666 1409 dbSNP
rs932528525 1420 dbSNP
rs184665547 1448 dbSNP
rs1487303947 1449 dbSNP
rs1206616175 1458 dbSNP
rs1348396742 1461 dbSNP
rs760943305 1468 dbSNP
rs1049585718 1477 dbSNP
rs1442711361 1483 dbSNP
rs779895569 1483 dbSNP
rs1352081388 1489 dbSNP
rs890921838 1495 dbSNP
rs536262675 1496 dbSNP
rs876935 1500 dbSNP
rs1325548741 1503 dbSNP
rs1407938272 1504 dbSNP
rs982073555 1504 dbSNP
rs1159626932 1510 dbSNP
rs1421557179 1515 dbSNP
rs764198485 1516 dbSNP
rs547845751 1522 dbSNP
rs937878335 1532 dbSNP
rs1269006481 1537 dbSNP
rs115983947 1546 dbSNP
rs914994799 1548 dbSNP
rs1224267088 1550 dbSNP
rs1330955817 1557 dbSNP
rs998842841 1571 dbSNP
rs1223156145 1579 dbSNP
rs1290956021 1587 dbSNP
rs1033128075 1589 dbSNP
rs1428774758 1592 dbSNP
rs1344669371 1597 dbSNP
rs1459228212 1599 dbSNP
rs893222566 1599 dbSNP
rs1276931508 1615 dbSNP
rs1404383396 1625 dbSNP
rs944353770 1626 dbSNP
rs558873170 1627 dbSNP
rs148379848 1629 dbSNP
rs1192550908 1632 dbSNP
rs901414451 1645 dbSNP
rs997058670 1653 dbSNP
rs1012966068 1674 dbSNP
rs768304811 1678 dbSNP
rs1028458725 1686 dbSNP
rs1209292502 1687 dbSNP
rs1466159717 1688 dbSNP
rs1023140916 1696 dbSNP
rs534991173 1709 dbSNP
rs971942239 1723 dbSNP
rs1311408685 1725 dbSNP
rs774353251 1735 dbSNP
rs545100124 1741 dbSNP
rs1361366659 1742 dbSNP
rs1005614105 1743 dbSNP
rs1437935282 1744 dbSNP
rs1286437715 1750 dbSNP
rs947980595 1751 dbSNP
rs1487873208 1753 dbSNP
rs141559222 1757 dbSNP
rs1361247612 1764 dbSNP
rs1177794427 1778 dbSNP
rs146371478 1779 dbSNP
rs961055832 1784 dbSNP
rs1188596108 1786 dbSNP
rs1450754499 1789 dbSNP
rs973709641 1794 dbSNP
rs919556134 1797 dbSNP
rs932412465 1800 dbSNP
rs1034982419 1802 dbSNP
rs1307091273 1803 dbSNP
rs1275486869 1804 dbSNP
rs1230755431 1805 dbSNP
rs959242819 1809 dbSNP
rs772182616 1817 dbSNP
rs1419554817 1818 dbSNP
rs985587269 1823 dbSNP
rs1296743588 1824 dbSNP
rs990620480 1827 dbSNP
rs1296761401 1832 dbSNP
rs912417214 1837 dbSNP
rs1439610650 1839 dbSNP
rs1353597959 1840 dbSNP
rs915047054 1841 dbSNP
rs943851839 1844 dbSNP
rs1042337214 1846 dbSNP
rs542263834 1849 dbSNP
rs1162861153 1850 dbSNP
rs1424268087 1853 dbSNP
rs1258041863 1857 dbSNP
rs561198832 1867 dbSNP
rs553278657 1870 dbSNP
rs893107797 1871 dbSNP
rs944422719 1874 dbSNP
rs1040444219 1885 dbSNP
rs922854869 1889 dbSNP
rs1291056900 1891 dbSNP
rs1246191553 1895 dbSNP
rs1323988835 1896 dbSNP
rs1225097703 1898 dbSNP
rs1223625386 1899 dbSNP
rs1374489506 1901 dbSNP
rs1309617941 1902 dbSNP
rs1013014142 1908 dbSNP
rs1363186610 1911 dbSNP
rs1023446354 1919 dbSNP
rs1301939824 1920 dbSNP
rs528367030 1923 dbSNP
rs540569301 1927 dbSNP
rs139672921 1928 dbSNP
rs2272135 1941 dbSNP
rs1015888713 1943 dbSNP
rs771690578 1949 dbSNP
rs150744874 1950 dbSNP
rs897227285 1951 dbSNP
rs1210552219 1952 dbSNP
rs545340552 1958 dbSNP
rs1180744235 1962 dbSNP
rs1259539834 1963 dbSNP
rs974263730 1968 dbSNP
rs1238951345 1976 dbSNP
rs753469058 1982 dbSNP
rs1035398289 1983 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067869. RNA binding protein: AGO2. Condition:Ago2 IP-seq (asynchronous cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|| |||:  :: ||||||| 
Target 5' --UCACCCAGGCUGGAGUGCAGu 3'
1 - 21
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
CLIP-seq Support 1 for dataset GSM1067869
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (asynchronous cells)
Location of target site ENST00000541212.1 | 3UTR | UCACCCAGGCUGGAGUGCAGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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