pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMCO1   
Synonyms HP10122, PCIA3, PNAS-136, TMCC4
Description transmembrane and coiled-coil domains 1
Transcript NM_019026   
Expression
Putative miRNA Targets on TMCO1
3'UTR of TMCO1
(miRNA target sites are highlighted)
>TMCO1|NM_019026|3'UTR
   1 ACTCAAGAACTCTTTATTTTCTATCATTCTTTCTAGACACACACACATCAGACTGGCAACTGTTTTGTAGCAAGAGCCAT
  81 AGGTAGCCTTACTACTTGGGCCTCTTTCTAGTTTTGAATTATTTCTAAGCCTTTTGGGTATGATTAGAGTGAAAATGGCA
 161 GCCAGCAAACTTGATAGTGCTTTTGGTCCTAGATGATTTTTATCAAATAAGTGGATTGATTAGTTAAGTTCAGGTAATGT
 241 TTATGTAATGAAAAACAAATAGCATCCTTCTTGTTTCATTTACATAAGTATTTTCTGTGGGACCGACTCTCAAGGCACTG
 321 TGTATGCCCTGCAAGTTGGCTGTCTATGAGCATTTAGAGATTTAGAAGAAAAATTTAGTTTGTTTAACCCTTGTAACTGT
 401 TTGTTTTGTTGTTGTTTTTTTTTCAAGCCAAATACATGACATAAGATCAATAAAGAGGCCAAATTTTTAGCTGTTTTATG
 481 TACAAGGAGAGATCTGTTTCATTTTGTTTTGCCGTATTTCTAGATATAAGTTTTAGCATGGGCCAGGAAGGACTAAAATA
 561 AAAGTTTTTAAGGTACTGTACTTTTTGCCATACTTGACTCATATACTCAAAATACAGAGTTGTCTTGGTGTAGGAATTGG
 641 AAAGCAAGAGTGGAAAGGAACGTAATAACTCGTTGGAGTTTAAAAATGAGGGTCTTGGCAAGTAACACTGATGTCTGAAA
 721 AAAAATTAAATATAAATAAATAAATAAAAATGAGGGTCCTCAGCTGTTCTCTTCATATCCTATTACAGTCTCTCAGATTC
 801 TTGTGGGGGCACTCTTAGATCTCCCTTGGAGACAAGGTTATAGTTATATGTTGTTAATCTCGCAGAGCTTCCTTTTAGTC
 881 ACAATAGCCTTCATTTTCTGCCATGCCCCTTCATAAGGGAGAAGGATGTTTGTACCATGATCCTCCCCGCATAATCTATG
 961 GAATTAGGAGTCCTGTGTGGAGTCTTATCAATAAATATGCACATTCATCAAATGTCTACTTAAATGTGAGTATTCTACCA
1041 GTGAGAAAAAACACATAATTTTCAAGGTAATCATTGTTAAACCAACAGCAAACTTCTTTCTTATCAGCACCATAAAGTCC
1121 AGAAGACAGTAGAAAAGTATCTTCAAAGTGCTGAGGAAAATAAGTATCAACTTAGAATTTTATGTACAATATTGGAGGCA
1201 AAATAAAGACATGTTTAGACATACAAAACTAAGAGAGTTGAATTATTAAAGGTTATATTCCAAGGACAAAAAAGAGGATC
1281 TGCCCAAGGTGAAGGTATGGCATACAAGAAACAATGGTCAACAGAGAAATAAAATATATGGATGAATATATGGATAAATT
1361 TGAGTGTTTTATGGATTATCTAATTTAAGGATTATCCCAAGACAGCCCTACAAGGTAATTACTGTTCTTACCTTCATTTA
1441 ACAGATGAGGAAACTGGGGCAGGGGAGGTTAGTAACTTGCTCTGCATCACAGAGCTATTGAGTGGCAGTCAGGATTTGAA
1521 TTCAACCAGTGTAAAGCCTAATAGTCCAGGCTGTCAAGCTCTATATTACAGCCTCCTCATGGGTATGTGGTGATTCTCTT
1601 CTCATCCCATCTCCTCAACTAGAGTGTGTGAGCTCTCTAAAGTTGGACTTTGTCTTTTTTTTTGTTCTCCTTATTACAAA
1681 GTAGTCAACGTGGGTGGAAACACAGCAGGAGCTCAATAAAAGCAGATGAAAGGGAACAGAAGTCCCTATTCTGAGACTAG
1761 TTTTATCAGAAGGATGTCTGATAATGGATGGTAATGACTTTTAATGGTCTTTTCTCCATATCATTGACCACTCTAAGCAA
1841 AATAATAATTCGAATGATAATGAAGAAAATGATGCCCATGATAACAATAATGACAAATATGAAATGGCTAAAATAAAACA
1921 TGAAACCATCCTCAAAATTCTGCCATCACCTTTTTAAAGTGAGAATATATAGCACACTCTATCACTCATACCCTGAGGCT
2001 TTGAAGTTGGTGCTTTCTAATCAGACTTCTTATGGACCAGGTTTTCATATACAAATTATGTTTCCATGGTAAGGAATAAA
2081 TAAGAGGGAGAAGTTAAAAAGGAGAGATTACATCTATTCACCCTATTCATTAAAATTTTTTTAAATTTTTTTCCAAATAT
2161 GTTCTGCTTATGTATATTCACTCTATTCTTAAAAGCACAATAACAAAGATATATTACAGAGGAAATAAAACTATCACAAG
2241 AATTAAATTCAAGGAGTTATTAAGGGCTACTGCAGCCTCACAATTAGTTTTTTAAAATTTCTTGTCCTGAAGAAATTTCA
2321 AGACTAGTTATTTGGATGACACTCTAGGTCCACAGCATCACCAGATCATTGGAGATGACATTTCAAGACAGGCCTCTGAA
2401 CATCTCTCATAACACATAATTTGGTTATTTTCCCTATGTAAGATGGATTGTCTCCTGTCTAGGGAAGAAAAACAGCCATT
2481 ACTAATATCTGCATTAGTCTACTCAGGTTGCAATCATAATATGCTAAAGTAGTAAACTTTTAAAAATGACAGTAAACCTG
2561 AGTTTATTAACAGGTTACATTCTAAAAGCTAAGCTAGTTTGGAAATTGGAAAGCAAATGTGTGTAGATATTCATATGTCC
2641 TTGACCAGACTGGGCCTTTCTCTTCCCAGGTAAGTCATTCTCTCCAATGGGGCCAGTTACTTAAAATTACATCAGACAAT
2721 TGATAGAGCTTCTAGATCCCCCTTCTAAAACAAAAGCATTTTGCCACAAACTAGGATGGAGTAGGTTTTTTTCAGACTAT
2801 TTATACTTATTTTATGTATTTCAATACTGCCCTTTAAGTAAAAGTACTATATACTTTCTCTTTTTTTAGATTAATTCTGC
2881 TTAAGTCAGTCTTTTAATTTATTCTAGTTTGAGTTTTTAAAAAATTTTAGAATGAAAAATCTCAAAAATATACTATTATG
2961 TATATACACTATTTTATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGA
3041 GAGAATAAAGAACACCTAGGTAACCCATCCTCCACCTTCGACAATTATCAGCTCCTAGCTAATTTGTGTCATCTGTAACC
3121 CCACCTGCTTCTGCCCTTTCTGTATTATTTTGAAGCAAATCTTATCATTTATCTGTAAATATTTCAGGACTTTAAAAAAT
3201 ATGTGTAATCTGAATACCATTTTTACACCTAAGAAAATGGACAATTCCTTAATATAATGTGTTGTCTATAGATGTCAAAA
3281 ATTTTTGCAGTTTTTTGGAATCAGGAACCAAGTAAGGTACTGAATATTGCAGTTAGCTGATACACATCCTAAATTTCTTC
3361 AATTGTTGTGGTCCTCAAACTAGAGTGTATCAGAATCACTAGAGCCTTGTTAGAACACAAACTGCTGGGCCCCACCCCAG
3441 AGCTGGTGATCTGTAAGTCTGCTGTGGAGTCTGGGAATTTGCATCTCTAACAAATTCCCAGGTGATGCTGAAGCTGCAGG
3521 TTTGGGGTTCACTCACCTATTGGTTCATCAGCATCTCTCTGCCCTCTTACAATATATTTGTTGAAGAAGTTGTGTTGTTT
3601 ACCTTGTAGAGTTTTTCTTAGTTTGGATTTTGGTGATAGCATGCTGGTTTTTTCATACTATTGGTTGTCTCTGTAATGCG
3681 AGCAGCTTTTGATCTATTAATTAATGAGATATTAAAAGTGATGGTATTCTAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAG-UGUCACGucu 5'
            ||||| ||||: |:|||||   
Target 5' agCCAGCAAACTTGATAGTGCttt 3'
160 - 183 141.00 -23.32
2
miRNA  3' ucGGUCG-GUU---GAGUGUCACGUCu 5'
            ||||: :||   || |:||| ||| 
Target 5' aaCCAGTGTAAAGCCTAATAGTCCAGg 3'
1524 - 1550 133.00 -15.40
3
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :||| || | :| ||| ||| 
Target 5' taTCAG-CACCATAAAGTCCAGa 3'
1102 - 1123 128.00 -12.56
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30544640 4 COSMIC
COSN6006730 5 COSMIC
COSN30515880 7 COSMIC
COSN31569497 7 COSMIC
COSN30186266 36 COSMIC
COSN30522842 46 COSMIC
COSN31492066 59 COSMIC
COSN30151912 74 COSMIC
COSN30496159 104 COSMIC
COSN31557707 146 COSMIC
COSN20095532 414 COSMIC
COSN14456471 514 COSMIC
COSN30375091 541 COSMIC
COSN25975020 717 COSMIC
COSN16186480 758 COSMIC
COSN29400361 919 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs928077940 2 dbSNP
rs758217263 4 dbSNP
rs752091077 7 dbSNP
rs1322833861 16 dbSNP
rs1438820020 21 dbSNP
rs765006399 23 dbSNP
rs1291895059 25 dbSNP
rs1450871075 27 dbSNP
rs757302422 39 dbSNP
rs1435743269 40 dbSNP
rs1299717547 45 dbSNP
rs753789740 47 dbSNP
rs1182003791 49 dbSNP
rs764294913 53 dbSNP
rs760783276 62 dbSNP
rs1165063517 70 dbSNP
rs950859904 76 dbSNP
rs1264354740 80 dbSNP
rs200627818 80 dbSNP
rs1189839242 81 dbSNP
rs1250438778 82 dbSNP
rs1448085809 87 dbSNP
rs767694399 88 dbSNP
rs563828358 95 dbSNP
rs1026918963 96 dbSNP
rs1414931253 98 dbSNP
rs973644613 102 dbSNP
rs1446002513 107 dbSNP
rs769785900 108 dbSNP
rs1407303403 114 dbSNP
rs771251066 116 dbSNP
rs748108266 120 dbSNP
rs1349434446 121 dbSNP
rs763480887 132 dbSNP
rs1244355082 136 dbSNP
rs1344794753 140 dbSNP
rs1298707424 141 dbSNP
rs1017266869 144 dbSNP
rs1434212287 149 dbSNP
rs1049739628 150 dbSNP
rs1380980832 151 dbSNP
rs773659118 156 dbSNP
rs1221172134 159 dbSNP
rs890194840 163 dbSNP
rs768167494 173 dbSNP
rs780739996 175 dbSNP
rs1030056269 176 dbSNP
rs746437636 181 dbSNP
rs1390050155 189 dbSNP
rs1210021122 191 dbSNP
rs1302511415 204 dbSNP
rs1422601150 206 dbSNP
rs998623406 207 dbSNP
rs779602323 211 dbSNP
rs1474914928 216 dbSNP
rs543955118 222 dbSNP
rs776087665 242 dbSNP
rs578139014 244 dbSNP
rs778606117 245 dbSNP
rs558227875 257 dbSNP
rs1473971212 259 dbSNP
rs1445487808 263 dbSNP
rs543396419 269 dbSNP
rs947318397 271 dbSNP
rs73020510 284 dbSNP
rs1334335983 288 dbSNP
rs1484316001 289 dbSNP
rs1055032503 290 dbSNP
rs988960185 298 dbSNP
rs1456641509 301 dbSNP
rs772651000 304 dbSNP
rs749255085 305 dbSNP
rs577576640 306 dbSNP
rs1445535996 307 dbSNP
rs182144516 312 dbSNP
rs1350702099 315 dbSNP
rs1229809443 316 dbSNP
rs1276856631 318 dbSNP
rs756121402 319 dbSNP
rs752773603 320 dbSNP
rs79658899 321 dbSNP
rs1472658902 322 dbSNP
rs1403087088 324 dbSNP
rs1279951637 327 dbSNP
rs1444537850 328 dbSNP
rs755191842 331 dbSNP
rs1208436491 335 dbSNP
rs919423128 338 dbSNP
rs1329335896 340 dbSNP
rs1409128621 342 dbSNP
rs756804431 345 dbSNP
rs1174000256 350 dbSNP
rs115026771 351 dbSNP
rs1409862063 363 dbSNP
rs1428003170 374 dbSNP
rs1196647963 375 dbSNP
rs1473882108 378 dbSNP
rs995474539 381 dbSNP
rs1181658997 383 dbSNP
rs567512207 389 dbSNP
rs896970928 390 dbSNP
rs1036895880 392 dbSNP
rs557385473 393 dbSNP
rs1201263188 397 dbSNP
rs1370869126 398 dbSNP
rs1323077158 399 dbSNP
rs1261412043 404 dbSNP
rs1230265671 405 dbSNP
rs754512890 407 dbSNP
rs891229302 414 dbSNP
rs1436540682 415 dbSNP
rs986393261 415 dbSNP
rs79111961 417 dbSNP
rs932663408 417 dbSNP
rs1441341646 423 dbSNP
rs1044368372 424 dbSNP
rs35952900 424 dbSNP
rs534432920 424 dbSNP
rs191912742 434 dbSNP
rs76436126 436 dbSNP
rs992363781 437 dbSNP
rs959755958 441 dbSNP
rs773712375 448 dbSNP
rs1331355033 451 dbSNP
rs1173698952 462 dbSNP
rs1308997790 473 dbSNP
rs868550057 474 dbSNP
rs181922339 478 dbSNP
rs1063701 483 dbSNP
rs138477165 484 dbSNP
rs1063702 486 dbSNP
rs753514301 491 dbSNP
rs1412015150 501 dbSNP
rs555126901 506 dbSNP
rs1469004623 512 dbSNP
rs762360286 513 dbSNP
rs559909961 514 dbSNP
rs1461068621 515 dbSNP
rs1241500510 527 dbSNP
rs1405544533 530 dbSNP
rs1324992732 533 dbSNP
rs1328781171 538 dbSNP
rs1210767975 546 dbSNP
rs549352625 549 dbSNP
rs1283567502 553 dbSNP
rs73020508 555 dbSNP
rs894381288 557 dbSNP
rs1285775689 560 dbSNP
rs1231031708 561 dbSNP
rs1246414927 562 dbSNP
rs1272812949 569 dbSNP
rs1381710071 575 dbSNP
rs1055610208 576 dbSNP
rs1436747592 582 dbSNP
rs1210616967 583 dbSNP
rs1345289125 589 dbSNP
rs1317007325 590 dbSNP
rs1002766601 599 dbSNP
rs1416545790 600 dbSNP
rs771568850 601 dbSNP
rs752374783 602 dbSNP
rs1444417094 606 dbSNP
rs1451157875 607 dbSNP
rs1383726534 608 dbSNP
rs1186473281 615 dbSNP
rs73020507 617 dbSNP
rs1319515196 620 dbSNP
rs73020504 625 dbSNP
rs1241655292 628 dbSNP
rs1213695759 631 dbSNP
rs1390226215 634 dbSNP
rs1388017544 636 dbSNP
rs929401881 651 dbSNP
rs187994736 652 dbSNP
rs770851535 655 dbSNP
rs1246573836 657 dbSNP
rs919358636 661 dbSNP
rs1312578735 662 dbSNP
rs1015818310 665 dbSNP
rs1293914567 669 dbSNP
rs1008074996 671 dbSNP
rs183635612 672 dbSNP
rs942163167 674 dbSNP
rs1428010605 676 dbSNP
rs1286173449 677 dbSNP
rs910740883 681 dbSNP
rs777702511 683 dbSNP
rs1268803777 684 dbSNP
rs1424510373 688 dbSNP
rs954949762 691 dbSNP
rs1364114887 698 dbSNP
rs1170858963 701 dbSNP
rs1429405981 702 dbSNP
rs1419048336 704 dbSNP
rs1183942164 706 dbSNP
rs1184954739 711 dbSNP
rs1448089164 712 dbSNP
rs756172964 713 dbSNP
rs758079005 714 dbSNP
rs996925477 715 dbSNP
rs754137018 725 dbSNP
rs1490163556 726 dbSNP
rs922924748 726 dbSNP
rs535317975 731 dbSNP
rs1206999125 732 dbSNP
rs1307761038 733 dbSNP
rs1271876974 736 dbSNP
rs967136928 745 dbSNP
rs569927853 749 dbSNP
rs1263763704 750 dbSNP
rs1413477981 756 dbSNP
rs945603762 758 dbSNP
rs74121417 759 dbSNP
rs1057007984 761 dbSNP
rs181198069 766 dbSNP
rs754972149 768 dbSNP
rs958763147 781 dbSNP
rs1310293861 783 dbSNP
rs939500147 786 dbSNP
rs1232862915 789 dbSNP
rs1289073993 791 dbSNP
rs1462835667 803 dbSNP
rs1331248202 805 dbSNP
rs1354269830 810 dbSNP
rs926815963 812 dbSNP
rs1416328552 814 dbSNP
rs755039219 815 dbSNP
rs1034150870 821 dbSNP
rs751745016 822 dbSNP
rs1483475787 825 dbSNP
rs1266654522 831 dbSNP
rs1178826823 834 dbSNP
rs549844361 840 dbSNP
rs773264677 844 dbSNP
rs1250482175 846 dbSNP
rs1202021279 847 dbSNP
rs919566831 849 dbSNP
rs1313575464 854 dbSNP
rs1263293098 861 dbSNP
rs1002735443 862 dbSNP
rs1320738568 865 dbSNP
rs1290789069 866 dbSNP
rs1392412456 867 dbSNP
rs973783511 872 dbSNP
rs766523316 876 dbSNP
rs1157608848 877 dbSNP
rs961560658 878 dbSNP
rs73018602 881 dbSNP
rs1407076512 883 dbSNP
rs1174715167 884 dbSNP
rs1414414129 885 dbSNP
rs1175859839 888 dbSNP
rs986557609 903 dbSNP
rs1468315566 913 dbSNP
rs114582888 916 dbSNP
rs1161203525 917 dbSNP
rs1363722911 920 dbSNP
rs573602271 921 dbSNP
rs1306259006 922 dbSNP
rs1419538427 923 dbSNP
rs771834094 925 dbSNP
rs1175260986 926 dbSNP
rs1291278226 928 dbSNP
rs1462407695 935 dbSNP
rs1243350181 936 dbSNP
rs150123019 937 dbSNP
rs1205514122 940 dbSNP
rs1459597808 941 dbSNP
rs1350944909 942 dbSNP
rs530893448 948 dbSNP
rs750835389 949 dbSNP
rs1240463219 950 dbSNP
rs1316843318 951 dbSNP
rs142042113 954 dbSNP
rs1434264980 958 dbSNP
rs1230369343 959 dbSNP
rs1383923760 961 dbSNP
rs1169390058 966 dbSNP
rs1336352883 972 dbSNP
rs1038166449 973 dbSNP
rs1450634851 974 dbSNP
rs1434479908 975 dbSNP
rs942129560 977 dbSNP
rs1289508750 979 dbSNP
rs1454306124 988 dbSNP
rs571582788 998 dbSNP
rs1022695622 1001 dbSNP
rs1156728251 1011 dbSNP
rs557959121 1012 dbSNP
rs762257158 1020 dbSNP
rs777145260 1026 dbSNP
rs892679745 1027 dbSNP
rs1459690857 1030 dbSNP
rs1050618261 1031 dbSNP
rs571552376 1037 dbSNP
rs1485857678 1039 dbSNP
rs1247167874 1048 dbSNP
rs1259510695 1052 dbSNP
rs1225313643 1053 dbSNP
rs1339731105 1056 dbSNP
rs1360617205 1056 dbSNP
rs1273648969 1061 dbSNP
rs1314727426 1064 dbSNP
rs1244126698 1065 dbSNP
rs1328420000 1066 dbSNP
rs1296433380 1073 dbSNP
rs1056713135 1075 dbSNP
rs1276450478 1076 dbSNP
rs1381697389 1078 dbSNP
rs1305442496 1084 dbSNP
rs939615999 1093 dbSNP
rs1287053519 1094 dbSNP
rs756603565 1098 dbSNP
rs1265530887 1099 dbSNP
rs766948013 1102 dbSNP
rs1162693308 1103 dbSNP
rs1489169243 1103 dbSNP
rs1216166740 1104 dbSNP
rs1442441166 1107 dbSNP
rs1251642885 1108 dbSNP
rs761772681 1112 dbSNP
rs1374417657 1114 dbSNP
rs905346107 1115 dbSNP
rs1193397290 1131 dbSNP
rs1427435308 1135 dbSNP
rs1189630566 1137 dbSNP
rs923541868 1138 dbSNP
rs1045279710 1140 dbSNP
rs1426963446 1142 dbSNP
rs1490651573 1144 dbSNP
rs1291590452 1145 dbSNP
rs542495841 1148 dbSNP
rs919698436 1149 dbSNP
rs1323867282 1160 dbSNP
rs1393672343 1161 dbSNP
rs1252131036 1163 dbSNP
rs776946693 1164 dbSNP
rs770761621 1166 dbSNP
rs1285259762 1170 dbSNP
rs974113120 1171 dbSNP
rs190014309 1180 dbSNP
rs1346039652 1183 dbSNP
rs1312986715 1187 dbSNP
rs1302368268 1191 dbSNP
rs1323037651 1202 dbSNP
rs1422542413 1206 dbSNP
rs1398316984 1209 dbSNP
rs945676011 1210 dbSNP
rs1271929087 1212 dbSNP
rs773184926 1214 dbSNP
rs1461117118 1221 dbSNP
rs939705364 1224 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067869. RNA binding protein: AGO2. Condition:Ago2 IP-seq (asynchronous cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|: |||:  :: ||||||| 
Target 5' --UCGCCCAGGCUGGAGUGCAGu 3'
1 - 21
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
CLIP-seq Support 1 for dataset GSM1067869
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (asynchronous cells)
Location of target site ENST00000392129.6 | 3UTR | UCGCCCAGGCUGGAGUGCAGUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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