pre-miRNA Information
pre-miRNA hsa-mir-500b   
Genomic Coordinates chrX: 50010672 - 50010750
Description Homo sapiens miR-500b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-500b-3p
Sequence 51| GCACCCAGGCAAGGAUUCUG |70
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs782140253 8 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FLG2   
Synonyms IFPS
Description filaggrin family member 2
Transcript NM_001014342   
Expression
Putative miRNA Targets on FLG2
3'UTR of FLG2
(miRNA target sites are highlighted)
>FLG2|NM_001014342|3'UTR
   1 CAGTTATTTTCTAGTTCTGACCTTATAGTATCCAAAGCAACTAAAAGAACAGGAAGACACAGTTTAAATCATGAACAGTC
  81 AATGGTAAGTTATGAACATTCAGTTGATTCTCAGTATCAGTCTCGACCTATTATTATAAGAAGTCAGGAATCTAGTCATG
 161 GACATTCTATAGTAACTCATAAACAGTCAAACAACACCTATGTTCAACCTGGATATAACACAGCCAGAAGGGAGGGATGT
 241 ACACATAGCCAGTCAAATGACCACCTTGGATTTGGCCATGGACAATCCATATCAGTTCATGGCCATTCAAAATCTAGTTC
 321 AATCAGAAAACAGGAATCCCATACTGATAACAAAAAGCATTCAGAAGATTGGGAGAAAGACACTCATGAGCAATTAGGAT
 401 CTAGGCATGGGAAGTTAGAGTTCAATACAATAGGTATACATGGATCTAGCCAGCAACATTTCGGAGATACAACTTTTCAT
 481 GGGCAGGTAAGATCCAGCACAGGTTTTGCCAGATAGGTATTAAGTCATGGGCCATCAAGAGATGCCTAGGGTCAGTCTGG
 561 ATTCAGTACCAATGAAAGACAAGTATACAGCCATGGCCAATCAAATGATAGTTATGAGTAGTCAAATGACAGCAAAAGTC
 641 AAAGATACATTTTCAGTCACTTTCTTGACAGCCAAGACCCTGCAGGAATTGAAGAGTATAGGTATAGATATTCATCAAGC
 721 AGTGCAACCATATGCAGTGGGGGAGACAAAGGCAAGAGTCAGAGTCAAGTCTGTCAGGAGGTATCAGAATATACGGTGAG
 801 GATGTGGGCAAAAAACAAAGAGGCTCTGAGGCCAGCGGTTACCATACAAAGGAAAGAACAGGCTCTGGTTCCTTCTGCTT
 881 AGATAGCAACACCCCACTCTATGAATATGTCCAAGAACAAAGGAGTTATTACTTTGAATAAGAAGCCAACATAAACTAGC
 961 CCAAGATAAGAACTAACCCAGAGAAGAAATGAGACACATACATGAAATTAAGGTATTTAACATGATCTCCTCTTTTGGTA
1041 GTAAGGGTATATGTCTGTTCTTTCATTTTAACTATAGTTCTGTACTATATTACTTTTGTTTGGTGCCAGGTGTTTTTGTA
1121 AGGCTCCACATTCATTGAACTCCTTGGTTAGAAAATAGTGAATGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGC
1201 ACTTTGGGAGGCCAAGATGGGTGGATCACGAAGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGTGAAATCCCGTCTCT
1281 ACTAAAAATACAAAAATTAGCTGGGTGCAGTAGCGGGCACCTGTAATCCTAGCTACTCAGGAGGCTGAGGCAGGAGAATT
1361 GGTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGTGACTGAGCAAGACTCC
1441 ACCTTGAAAAAAAGAAAGAAAGAAAATAGTGAATGGAAGAAAAAGATAAACACCATTTGGGGCTATATTCAGAACTATAT
1521 AATAAAGAGAGATTTGTGTGGTTGGGAATAAAATTAGGTTTTAAAAAAATTTCCGAATTTCAAAATTTGGATTTTCCAGA
1601 TTTTGTTTTAATTAATTATTGACAAACCTATCCAAGGAGCTAAATGACGTGGTTTAGGAGCCAAAACGTCTCTAGAAACA
1681 TTATAACACATCCCATCCTGAACAAAGAATGTTGTCATAGTTTCCCACATGAATATTCAGAATATTTGCATCTTTTTGTG
1761 TCACTACTGGAATTCTGTACAATTATATTTAAATTTATTGTCATGGCCTTCTGGATATAGGATCCAGAAAATTGTACTTC
1841 ATAAAAATTGGCAATAAACATTTCATCAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1921 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gucUUAGGAACGGACCCACg 5'
             | |||  ||||||||| 
Target 5' tgcACTCC-AGCCTGGGTGa 3'
1408 - 1426 156.00 -19.80
2
miRNA  3' gucUUAGGAACGGACCCACg 5'
             ||   ||  ||||||| 
Target 5' tacAAAAATTAGCTGGGTGc 3'
1289 - 1308 145.00 -15.10
3
miRNA  3' gucuuaggaacggACCCACg 5'
                       |||||| 
Target 5' tgggaggccaagaTGGGTGg 3'
1205 - 1224 120.00 -13.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30180198 37 COSMIC
COSN30144414 42 COSMIC
COSN30185461 78 COSMIC
COSN30190093 79 COSMIC
COSN19627577 99 COSMIC
COSN29820323 110 COSMIC
COSN30141809 110 COSMIC
COSN1089481 111 COSMIC
COSN31502183 112 COSMIC
COSN31502264 114 COSMIC
COSN31557712 137 COSMIC
COSN22842746 179 COSMIC
COSN17253162 214 COSMIC
COSN19526733 405 COSMIC
COSN30066236 427 COSMIC
COSN8642568 462 COSMIC
COSN31550305 685 COSMIC
COSN31516551 771 COSMIC
COSN31530942 788 COSMIC
COSN8636211 828 COSMIC
COSN16401507 900 COSMIC
COSN31570825 905 COSMIC
COSN24297582 949 COSMIC
COSN30539493 1032 COSMIC
COSN8642567 1171 COSMIC
COSN5197755 1173 COSMIC
COSN1406267 1190 COSMIC
COSN6002867 1470 COSMIC
COSN8642566 1575 COSMIC
COSN7177526 1657 COSMIC
COSN6507211 1742 COSMIC
COSN21462995 1754 COSMIC
COSN26829574 1780 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1036351741 3 dbSNP
rs1290272772 5 dbSNP
rs1365969239 11 dbSNP
rs372553275 17 dbSNP
rs1157344157 19 dbSNP
rs1345686969 22 dbSNP
rs761038340 22 dbSNP
rs775841707 25 dbSNP
rs1244321805 26 dbSNP
rs191550376 37 dbSNP
rs756808977 38 dbSNP
rs1255557962 47 dbSNP
rs1489645194 69 dbSNP
rs1384211081 80 dbSNP
rs1302912033 93 dbSNP
rs1194414234 98 dbSNP
rs1020471340 99 dbSNP
rs1473203686 100 dbSNP
rs887853515 116 dbSNP
rs1049110345 124 dbSNP
rs534794134 125 dbSNP
rs371488924 128 dbSNP
rs1030328900 131 dbSNP
rs535435934 136 dbSNP
rs763443589 137 dbSNP
rs1369780673 138 dbSNP
rs1410294345 157 dbSNP
rs939604412 158 dbSNP
rs1257556041 169 dbSNP
rs1227836660 175 dbSNP
rs1184129173 180 dbSNP
rs1313596824 184 dbSNP
rs757918583 187 dbSNP
rs751267958 190 dbSNP
rs1225604009 198 dbSNP
rs1482282171 200 dbSNP
rs1279748762 203 dbSNP
rs558694738 204 dbSNP
rs888369301 206 dbSNP
rs1344637200 209 dbSNP
rs924216880 214 dbSNP
rs977723766 221 dbSNP
rs1046983238 229 dbSNP
rs967724184 236 dbSNP
rs752257651 240 dbSNP
rs1256050554 242 dbSNP
rs985189356 244 dbSNP
rs1276471810 246 dbSNP
rs1180737787 249 dbSNP
rs547584649 250 dbSNP
rs1225050064 261 dbSNP
rs1256324453 262 dbSNP
rs1425170576 281 dbSNP
rs533822464 285 dbSNP
rs895513624 290 dbSNP
rs1029470100 300 dbSNP
rs376323542 303 dbSNP
rs961266591 312 dbSNP
rs765141597 322 dbSNP
rs1015558636 324 dbSNP
rs1381506272 331 dbSNP
rs927033917 340 dbSNP
rs1005479937 341 dbSNP
rs1311799866 344 dbSNP
rs1410023609 350 dbSNP
rs1372096601 351 dbSNP
rs887738272 352 dbSNP
rs768558664 358 dbSNP
rs74649003 363 dbSNP
rs1237492995 365 dbSNP
rs947522737 369 dbSNP
rs1184367361 370 dbSNP
rs1369417823 373 dbSNP
rs913394004 374 dbSNP
rs1012303687 382 dbSNP
rs989062075 383 dbSNP
rs1167483804 384 dbSNP
rs759513395 387 dbSNP
rs895248001 390 dbSNP
rs1422609880 402 dbSNP
rs954964834 407 dbSNP
rs536802721 418 dbSNP
rs1451748012 419 dbSNP
rs1320029974 424 dbSNP
rs1030774775 426 dbSNP
rs974740075 428 dbSNP
rs965174448 434 dbSNP
rs567863871 436 dbSNP
rs1220249400 437 dbSNP
rs1281390472 443 dbSNP
rs1313392325 450 dbSNP
rs1016316325 461 dbSNP
rs753593078 462 dbSNP
rs186253486 463 dbSNP
rs888316930 467 dbSNP
rs939558254 469 dbSNP
rs924185794 473 dbSNP
rs1477578186 479 dbSNP
rs1191650109 480 dbSNP
rs1195455281 492 dbSNP
rs1417284602 493 dbSNP
rs1158514596 497 dbSNP
rs1042586893 499 dbSNP
rs1265844497 516 dbSNP
rs1458961377 517 dbSNP
rs528211978 519 dbSNP
rs946975948 524 dbSNP
rs1246838063 536 dbSNP
rs914886932 540 dbSNP
rs759651517 546 dbSNP
rs1332637440 548 dbSNP
rs1437660554 549 dbSNP
rs1277025882 554 dbSNP
rs376144616 565 dbSNP
rs1228397035 570 dbSNP
rs1287143617 574 dbSNP
rs79806220 578 dbSNP
rs985544919 585 dbSNP
rs181190907 590 dbSNP
rs190061784 593 dbSNP
rs1390496950 597 dbSNP
rs139917148 599 dbSNP
rs1295700656 607 dbSNP
rs947134770 609 dbSNP
rs953808509 619 dbSNP
rs1460307124 621 dbSNP
rs768827285 622 dbSNP
rs1417854006 625 dbSNP
rs913425614 627 dbSNP
rs976610360 636 dbSNP
rs1473579541 642 dbSNP
rs961234612 645 dbSNP
rs1240828359 646 dbSNP
rs763111847 656 dbSNP
rs1181308206 678 dbSNP
rs923521801 679 dbSNP
rs1452430396 680 dbSNP
rs1267750649 681 dbSNP
rs975150731 683 dbSNP
rs1350525664 686 dbSNP
rs964708853 687 dbSNP
rs909206300 697 dbSNP
rs1467075786 698 dbSNP
rs1005447356 704 dbSNP
rs1355203612 705 dbSNP
rs1228588625 713 dbSNP
rs1291682766 718 dbSNP
rs1339806485 720 dbSNP
rs74456239 721 dbSNP
rs1228938351 723 dbSNP
rs1027640765 739 dbSNP
rs563478563 743 dbSNP
rs1484025014 745 dbSNP
rs572513799 751 dbSNP
rs543319532 752 dbSNP
rs746397391 753 dbSNP
rs574243070 756 dbSNP
rs150033871 758 dbSNP
rs1003593504 762 dbSNP
rs1429551073 764 dbSNP
rs1303852827 765 dbSNP
rs1439231462 769 dbSNP
rs993986694 770 dbSNP
rs1331607987 773 dbSNP
rs1339375167 780 dbSNP
rs1448213658 783 dbSNP
rs960248577 784 dbSNP
rs185715055 793 dbSNP
rs78056768 794 dbSNP
rs1275139969 795 dbSNP
rs946943311 801 dbSNP
rs367983405 814 dbSNP
rs781351873 815 dbSNP
rs79507400 836 dbSNP
rs1277933364 838 dbSNP
rs1443083918 845 dbSNP
rs1189834610 847 dbSNP
rs538703427 852 dbSNP
rs1449133625 859 dbSNP
rs1158119014 863 dbSNP
rs1189604561 877 dbSNP
rs1392476568 883 dbSNP
rs1464929308 884 dbSNP
rs1042685137 893 dbSNP
rs1478477044 902 dbSNP
rs1379649239 908 dbSNP
rs1192001947 909 dbSNP
rs1400824709 910 dbSNP
rs932349329 915 dbSNP
rs891515600 922 dbSNP
rs1362544197 924 dbSNP
rs747396124 926 dbSNP
rs1298044958 929 dbSNP
rs1433994669 929 dbSNP
rs1367112101 938 dbSNP
rs922369109 942 dbSNP
rs1209228141 943 dbSNP
rs1230895002 957 dbSNP
rs115279484 959 dbSNP
rs1345752551 963 dbSNP
rs933462911 965 dbSNP
rs1266384671 966 dbSNP
rs1464599697 968 dbSNP
rs1209608233 970 dbSNP
rs1250216819 977 dbSNP
rs923524685 978 dbSNP
rs1281481356 984 dbSNP
rs939770394 990 dbSNP
rs1039323452 991 dbSNP
rs1177964746 998 dbSNP
rs181894175 1023 dbSNP
rs1204104372 1040 dbSNP
rs375646543 1041 dbSNP
rs1320821428 1042 dbSNP
rs11204982 1044 dbSNP
rs984779592 1047 dbSNP
rs189315357 1049 dbSNP
rs1331604071 1051 dbSNP
rs1370663245 1054 dbSNP
rs758039024 1057 dbSNP
rs983983154 1071 dbSNP
rs752175863 1072 dbSNP
rs952587298 1073 dbSNP
rs368758486 1074 dbSNP
rs990825538 1078 dbSNP
rs919319060 1085 dbSNP
rs1209581869 1086 dbSNP
rs531411182 1089 dbSNP
rs1035032873 1090 dbSNP
rs1415055953 1092 dbSNP
rs1404450990 1094 dbSNP
rs564042266 1099 dbSNP
rs548046366 1103 dbSNP
rs1180666510 1110 dbSNP
rs902621570 1112 dbSNP
rs754864896 1122 dbSNP
rs534695117 1123 dbSNP
rs565686334 1125 dbSNP
rs959868565 1140 dbSNP
rs1035928841 1158 dbSNP
rs1476346910 1163 dbSNP
rs1292714842 1166 dbSNP
rs1011053863 1167 dbSNP
rs894055540 1169 dbSNP
rs747106367 1170 dbSNP
rs1349894799 1172 dbSNP
rs1192397018 1173 dbSNP
rs778365753 1174 dbSNP
rs969934972 1175 dbSNP
rs1280164264 1176 dbSNP
rs151314663 1185 dbSNP
rs1346763975 1186 dbSNP
rs1203587296 1194 dbSNP
rs1251761439 1195 dbSNP
rs1275758165 1199 dbSNP
rs1231150670 1200 dbSNP
rs1182232574 1202 dbSNP
rs1337870497 1214 dbSNP
rs1011171525 1216 dbSNP
rs932927670 1229 dbSNP
rs900810909 1230 dbSNP
rs531974136 1238 dbSNP
rs1426341377 1243 dbSNP
rs766024568 1244 dbSNP
rs939739134 1246 dbSNP
rs1430400612 1248 dbSNP
rs115206579 1255 dbSNP
rs1377090595 1258 dbSNP
rs1414370204 1261 dbSNP
rs549634514 1274 dbSNP
rs552309626 1275 dbSNP
rs529951798 1283 dbSNP
rs943665654 1284 dbSNP
rs1226627903 1299 dbSNP
rs1274427028 1301 dbSNP
rs1343498430 1303 dbSNP
rs909435238 1308 dbSNP
rs527488290 1310 dbSNP
rs560732476 1311 dbSNP
rs919349621 1313 dbSNP
rs540854553 1314 dbSNP
rs560004314 1315 dbSNP
rs992293535 1320 dbSNP
rs1252013913 1324 dbSNP
rs1430266274 1326 dbSNP
rs572497947 1335 dbSNP
rs1172452725 1343 dbSNP
rs772710070 1344 dbSNP
rs928515835 1352 dbSNP
rs1035406346 1363 dbSNP
rs1408535814 1368 dbSNP
rs1433255759 1369 dbSNP
rs982108831 1370 dbSNP
rs764344877 1371 dbSNP
rs565275936 1379 dbSNP
rs374465443 1381 dbSNP
rs1299843500 1386 dbSNP
rs1011022856 1390 dbSNP
rs1312170822 1394 dbSNP
rs1272767258 1395 dbSNP
rs576329994 1399 dbSNP
rs1462367609 1400 dbSNP
rs1028508649 1401 dbSNP
rs1291502837 1408 dbSNP
rs763298870 1409 dbSNP
rs1021457792 1414 dbSNP
rs775661140 1421 dbSNP
rs541755110 1423 dbSNP
rs989781991 1433 dbSNP
rs1432566130 1440 dbSNP
rs955739278 1447 dbSNP
rs1351202096 1454 dbSNP
rs997477374 1465 dbSNP
rs574470163 1466 dbSNP
rs1431619241 1467 dbSNP
rs1310019701 1470 dbSNP
rs1455776801 1480 dbSNP
rs1389775961 1493 dbSNP
rs1433292948 1494 dbSNP
rs1440335011 1495 dbSNP
rs370463607 1500 dbSNP
rs1367508739 1501 dbSNP
rs901454711 1502 dbSNP
rs1283306367 1511 dbSNP
rs1325081577 1515 dbSNP
rs1327992494 1521 dbSNP
rs1267127773 1525 dbSNP
rs1447274024 1529 dbSNP
rs1031752416 1542 dbSNP
rs1405849973 1544 dbSNP
rs1040714076 1555 dbSNP
rs1200063925 1570 dbSNP
rs1488111179 1570 dbSNP
rs183767339 1574 dbSNP
rs1471661951 1576 dbSNP
rs1158581171 1579 dbSNP
rs574412094 1590 dbSNP
rs1017785385 1601 dbSNP
rs1474555599 1616 dbSNP
rs1048138037 1620 dbSNP
rs367545860 1627 dbSNP
rs374786608 1628 dbSNP
rs140262842 1649 dbSNP
rs1346795422 1652 dbSNP
rs1407432498 1653 dbSNP
rs760051516 1656 dbSNP
rs1049309961 1667 dbSNP
rs534165664 1668 dbSNP
rs147146061 1671 dbSNP
rs897850510 1672 dbSNP
rs1232631287 1683 dbSNP
rs12043049 1686 dbSNP
rs879135352 1689 dbSNP
rs1270925757 1710 dbSNP
rs939462103 1729 dbSNP
rs928581087 1731 dbSNP
rs2065954 1742 dbSNP
rs979962100 1745 dbSNP
rs1471247119 1748 dbSNP
rs948521721 1753 dbSNP
rs1329891204 1758 dbSNP
rs4550048 1765 dbSNP
rs966716148 1769 dbSNP
rs1222259828 1777 dbSNP
rs913913141 1781 dbSNP
rs989933412 1795 dbSNP
rs955939700 1800 dbSNP
rs558784400 1802 dbSNP
rs976126277 1818 dbSNP
rs1436861277 1820 dbSNP
rs1282088777 1828 dbSNP
rs569278777 1835 dbSNP
rs534388172 1837 dbSNP
rs879051145 1841 dbSNP
rs1293756846 1842 dbSNP
rs1323761919 1842 dbSNP
rs1204364003 1844 dbSNP
rs145057374 1848 dbSNP
rs529917712 1855 dbSNP
rs1007742713 1870 dbSNP
rs1185631948 1873 dbSNP
rs1237097580 1874 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067869. RNA binding protein: AGO2. Condition:Ago2 IP-seq (asynchronous cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gucUUAGGAACGGACCCACg 5'
             | |||  ||||||||| 
Target 5' ugcACUCC-AGCCUGGGUGa 3'
3 - 21
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
CLIP-seq Support 1 for dataset GSM1067869
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (asynchronous cells)
Location of target site ENST00000388718.5 | 3UTR | ACUGCACUCCAGCCUGGGUGACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
172 hsa-miR-500b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059905 HDGF heparin binding growth factor 2 4
MIRT235394 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 4
MIRT442246 PYGO1 pygopus family PHD finger 1 2 2
MIRT443591 ZNF439 zinc finger protein 439 2 4
MIRT453280 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT463540 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT465589 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT469462 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT485449 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT486682 WDR81 WD repeat domain 81 2 2
MIRT489078 POLM DNA polymerase mu 2 2
MIRT493734 GREM2 gremlin 2, DAN family BMP antagonist 2 2
MIRT494872 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT496130 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT496489 CHMP3 charged multivesicular body protein 3 2 2
MIRT496924 CLMN calmin 2 2
MIRT497297 TMEM119 transmembrane protein 119 2 2
MIRT499103 AGRN agrin 2 2
MIRT508979 CXorf38 chromosome X open reading frame 38 2 2
MIRT509911 NIPAL1 NIPA like domain containing 1 2 2
MIRT512820 ARRDC2 arrestin domain containing 2 2 4
MIRT512827 KBTBD6 kelch repeat and BTB domain containing 6 2 4
MIRT515360 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT516610 TRIM58 tripartite motif containing 58 2 2
MIRT517053 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT517637 ZNF491 zinc finger protein 491 2 2
MIRT518270 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT518625 STAR steroidogenic acute regulatory protein 2 2
MIRT518887 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT519026 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT520365 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT521106 SLC1A5 solute carrier family 1 member 5 2 2
MIRT521943 PHC3 polyhomeotic homolog 3 2 2
MIRT522253 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT522853 KIAA1551 KIAA1551 2 2
MIRT522868 KIAA1549 KIAA1549 2 2
MIRT524207 DDX19B DEAD-box helicase 19B 2 2
MIRT526004 ARHGAP27 Rho GTPase activating protein 27 2 2
MIRT527769 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT527827 TMEM74B transmembrane protein 74B 2 2
MIRT527861 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT528040 WT1 Wilms tumor 1 2 2
MIRT529802 ZDHHC8 zinc finger DHHC-type containing 8 2 2
MIRT531723 TARS threonyl-tRNA synthetase 2 2
MIRT531996 BARD1 BRCA1 associated RING domain 1 2 2
MIRT533338 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT533621 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT533652 TMOD2 tropomodulin 2 2 2
MIRT534397 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 2 2
MIRT538686 CCDC80 coiled-coil domain containing 80 2 2
MIRT540444 RBM43 RNA binding motif protein 43 2 2
MIRT542586 ZC3H12C zinc finger CCCH-type containing 12C 2 8
MIRT542796 PLEKHA3 pleckstrin homology domain containing A3 2 4
MIRT542991 ERC1 ELKS/RAB6-interacting/CAST family member 1 2 2
MIRT544424 ZNF460 zinc finger protein 460 2 4
MIRT545740 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 4
MIRT552618 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT554456 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT569663 PRIM1 DNA primase subunit 1 2 2
MIRT569924 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570140 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT573558 TMEM120B transmembrane protein 120B 2 2
MIRT574282 OPRD1 opioid receptor delta 1 2 2
MIRT575335 Fbxo6 F-box protein 6 2 2
MIRT607057 IDS iduronate 2-sulfatase 2 2
MIRT607078 POM121L7 POM121 transmembrane nucleoporin like 7 pseudogene 2 2
MIRT607500 HEBP2 heme binding protein 2 2 2
MIRT607530 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT607808 RHBDL2 rhomboid like 2 2 2
MIRT608079 ZFP14 ZFP14 zinc finger protein 2 2
MIRT609119 NUDT3 nudix hydrolase 3 2 2
MIRT609745 PTCH1 patched 1 2 2
MIRT612904 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT618720 PCSK2 proprotein convertase subtilisin/kexin type 2 2 2
MIRT618778 HLA-E major histocompatibility complex, class I, E 2 2
MIRT619015 SLC2A6 solute carrier family 2 member 6 2 2
MIRT623223 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT623819 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT625704 OPTN optineurin 2 2
MIRT626437 CHDH choline dehydrogenase 2 2
MIRT628087 KAT7 lysine acetyltransferase 7 2 2
MIRT628936 APOB apolipoprotein B 2 2
MIRT633543 PGBD5 piggyBac transposable element derived 5 2 2
MIRT634348 SGOL1 shugoshin 1 2 2
MIRT634611 KIAA1919 major facilitator superfamily domain containing 4B 2 2
MIRT635243 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT636681 BTLA B and T lymphocyte associated 2 2
MIRT636923 ZNF845 zinc finger protein 845 2 2
MIRT637606 ZNF554 zinc finger protein 554 2 2
MIRT639242 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT640835 POLR3A RNA polymerase III subunit A 2 2
MIRT642098 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT643087 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT643934 C17orf104 meiosis specific with coiled-coil domain 2 2
MIRT644353 FXN frataxin 2 2
MIRT645628 SF3A3 splicing factor 3a subunit 3 2 2
MIRT645754 FAM213A family with sequence similarity 213 member A 2 2
MIRT646329 MVB12B multivesicular body subunit 12B 2 2
MIRT646817 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647019 ADCY2 adenylate cyclase 2 2 2
MIRT647621 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT648517 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT648871 ABCA6 ATP binding cassette subfamily A member 6 2 2
MIRT649620 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650062 CCDC134 coiled-coil domain containing 134 2 2
MIRT650734 TNFSF8 TNF superfamily member 8 2 2
MIRT652389 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT654352 RBM27 RNA binding motif protein 27 2 2
MIRT655796 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT657329 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT657734 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT660613 ANO6 anoctamin 6 2 2
MIRT661243 ARL17B ADP ribosylation factor like GTPase 17B 2 2
MIRT662245 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662921 MED18 mediator complex subunit 18 2 2
MIRT662963 JPH2 junctophilin 2 2 2
MIRT663347 ZNF74 zinc finger protein 74 2 2
MIRT663528 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT663547 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663977 ZNF786 zinc finger protein 786 2 2
MIRT664084 METTL2B methyltransferase like 2B 2 2
MIRT664358 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664421 TIGD6 tigger transposable element derived 6 2 2
MIRT664476 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT664979 TDRD1 tudor domain containing 1 2 2
MIRT665128 PYCRL pyrroline-5-carboxylate reductase 3 2 2
MIRT666259 SLC31A1 solute carrier family 31 member 1 2 2
MIRT666321 SLC16A10 solute carrier family 16 member 10 2 2
MIRT666881 POLQ DNA polymerase theta 2 2
MIRT668469 FADS6 fatty acid desaturase 6 2 2
MIRT669554 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT669835 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT670185 CCDC142 coiled-coil domain containing 142 2 2
MIRT672020 PXMP4 peroxisomal membrane protein 4 2 2
MIRT672070 KIAA0930 KIAA0930 2 2
MIRT672475 RTTN rotatin 2 2
MIRT672851 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673090 AK1 adenylate kinase 1 2 2
MIRT673581 KDELC2 KDEL motif containing 2 2 2
MIRT674586 SLC35B4 solute carrier family 35 member B4 2 2
MIRT675001 STRN3 striatin 3 2 2
MIRT679018 MTMR10 myotubularin related protein 10 2 2
MIRT679680 STAT3 signal transducer and activator of transcription 3 2 2
MIRT682833 FLG2 filaggrin family member 2 2 2
MIRT682886 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT683442 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 2
MIRT687040 RNF115 ring finger protein 115 2 2
MIRT691957 RHOH ras homolog family member H 2 2
MIRT694625 ZFPM1 zinc finger protein, FOG family member 1 2 2
MIRT695637 SLC26A2 solute carrier family 26 member 2 2 2
MIRT697640 WRN Werner syndrome RecQ like helicase 2 2
MIRT702009 MIDN midnolin 2 2
MIRT702034 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT704789 CDK6 cyclin dependent kinase 6 2 2
MIRT705728 AMMECR1L AMMECR1 like 2 2
MIRT705879 ADM adrenomedullin 2 2
MIRT706220 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT708418 CERS4 ceramide synthase 4 2 2
MIRT709114 C3orf18 chromosome 3 open reading frame 18 2 2
MIRT709595 ITPA inosine triphosphatase 2 2
MIRT710945 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT712345 NLN neurolysin 2 2
MIRT712530 CYTH2 cytohesin 2 2 2
MIRT714019 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT717287 ARMC12 armadillo repeat containing 12 2 2
MIRT717733 FGF1 fibroblast growth factor 1 2 2
MIRT718083 CLIC5 chloride intracellular channel 5 2 2
MIRT718562 MUC20 mucin 20, cell surface associated 2 2
MIRT721639 MYLK3 myosin light chain kinase 3 2 2
MIRT722632 C8A complement C8 alpha chain 2 2
MIRT723177 CDCA4 cell division cycle associated 4 2 2
MIRT725523 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-500b Methotrexate 126941 NSC740 approved resistant cell line (W1)
hsa-miR-500b-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-500b-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

Error report submission