pre-miRNA Information
pre-miRNA hsa-mir-4707   
Genomic Coordinates chr14: 22956950 - 22957029
Description Homo sapiens miR-4707 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4707-3p
Sequence 52| AGCCCGCCCCAGCCGAGGUUCU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1180125593 2 dbSNP
rs1390998288 5 dbSNP
rs2273626 6 dbSNP
rs765507627 7 dbSNP
rs1299611135 9 dbSNP
rs1158707105 11 dbSNP
rs535691977 15 dbSNP
rs952013388 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RNF40   
Synonyms BRE1B, RBP95, STARING
Description ring finger protein 40
Transcript NM_014771   
Expression
Putative miRNA Targets on RNF40
3'UTR of RNF40
(miRNA target sites are highlighted)
>RNF40|NM_014771|3'UTR
   1 ACCTGAAACTCAGGGGACTCTGGAACACCATGGACCCTGGGGGCTGTGCCCCCATCTCCTCCCCACCCCAGGTCTAGTGG
  81 CCCCACCCTCCATTCCGGACCCCATGGGCCCAGCCCCTGCCCATCTAGTTGGTTTGGGGACCCTGGTGCATGCTAGTGGG
 161 CATGGGATCAGCCAAGCTTCGTTCCATCTTTTCCTAAAGGTCAGAGCTGCAGCCTAGGGGGCACTGCCCTACAGAAAAGG
 241 TCTGCCTGAGAGGCCTGAGGAGCCCAGAGCACTTGACTGAGCTTCCCGGAAACTGGCCCTAACCTGTCTGTCTCCGTGGA
 321 TGCATCCTAACCCTAAGGAAAATTCCCCAGGCTGTGATCTACCCTAGAGAAGGCTCGCTCCCTGCCTACTGGCTCACAAA
 401 TGAGGACCAGTGAGCCATGTCCTTGTTCCTTGTTTGAGACTGGGCTGCAGGCCCCAGGAAGACTTTCCTTCACCCACCAT
 481 CCCCCTAACCTCGGCAGGGCTTCTGTCCTGTGGAGTTCCCTGGACACCTTGGTCTGGCTCTTGTGCCAAGGGCTGAAGGA
 561 GGTACCCTCTTGGCAGATGGGGGCATCACTTGCTTCCTTTGGGAAGCTCTAAGGTTGCTGCAGTCACCTTCCTCATCTTG
 641 CAGGTGCTGAACCAACATCATCAGTTTCTATTCTAATCAGGCCCCTTCCCAATCTCCATTTCTCTGCCAAGCCCATTTAC
 721 CCCCACCTCATGCATCCCAAGGCTCTACTGGGTCCCTGGACCTAACCCTGCTTTCATCCTGGTGGCCTTAACTACAGTGG
 801 AGGTGGAACTTCCCAGGAGGGGAAGGGACAGACCAGCCCCAGCCGCTGGGCCAACTTCCAATCATTCCAGCTAGAAGAGC
 881 TTCCCCCTGACACCCTGTGACTGAGCCTGTGTCCTGTCTGCCTGCCCAGCCATGCTCCATCGGCTGTGAGGGCAGTGCCC
 961 GGAGAGGCCAGAGGGTTGGAGCTGCAGGGACCCGTTTGGACCCACAGCCTCTGTTCTAGAGATGCTTGTATAGGCTGTTA
1041 ATTGTGATGAATAAACGTTCAACCCTCGGCCTGCAGCCAGAGTAGCCAGGCCGCGCACCCCAAATGTAGTCCCCCGATTT
1121 TAGCTGCAGCAGCTGAGCAGCACTTTGCTGGCTTGGTGTGAGCCTGGGAGGGCTCAGACTTAACGGCCGGCAGGGATCCC
1201 GGACTGGGCCTGAAGGGGAGAGCGTGGTGGTCGTCGCGGAGCCGCCTGTCCTGCTCCCACCGACCCCGGTCTGACCACGT
1281 CCTTGGCTGTCATGGCCGGGGGATGCCGGGACTCCTCGGGCTGCATCCTGGGAAGTGTAGTTCCTGGTCCGCACATGGTT
1361 AGGAGGTTCTCGGAGAGAGAGCTAGTTTCCCGGTTGCGCTGGCCAAAGGCCGGCCTGAACTGGATCCTGCGGACCGCTTC
1441 TCAGCGGCTTCACCCCCACACCACTCGAATGCACAGATCGGGACACCTCAGCTGGGTGACTTCCCTCGTTGCAATCGGCC
1521 TCGGGAGCGGTGCGGCGTGTACCGAGCGGCGCCCCTGGGCTCAGCGCGCTGCAGGCGCCCCGGGCGGATCCTTCACCGAG
1601 GCAGGACTGGGGCTGGCGCCAGAGCCGGTGCGGAGCGGTGTTGGTTCAGGCGCTGGCGACAGTGCTATGGCCACGGCAGG
1681 GGCCGCGTGCGTCTCAGCGGTGGCGCCTTCGGACCCTATTGGCGCCCGGGACTTAAGCGGGGCCGCCGCTGCTGGACCAG
1761 GACGAACTGGAGAAGGAGACGCGGGCCGCCACGGTGACCTCGGGCGTAGGGCCGGCGGCGGCGGGCACGCTGGTGGAAGC
1841 GCGGGCCGCGGCAGGGGAGGACATCGGGCCGCAGAGAAAGTGCCGATGGCCTGGGGCAGCGGTGCGAGGGTGGGAAAAAC
1921 GCAGGATATTGCATCATAGAGACGCGGCCACCTTCGCCCCTGGAGAGCGCCAGTCTCAGGAGCGCCGCACCGGTCACGGG
2001 TGGAGGTCAGCCAGGCCTCCGTAAGCGCGGTCCCCTTCCAGGAGTAGCCTTCGCCTGGGCTCTTGAGTAGATGCCAAGTA
2081 ATTCCGCATCGTCTCTCTAGATATCTGCGCTAAAGGCCACCCGGTCTCCTTATCAGAGGGGCAAAACTCTCCTCGTGGGT
2161 CTTCATACCTAATAAAAGTCGGCATCAAACCACAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucuuggaGCCGACCCCGCCCGa 5'
                 |||| | ||||||| 
Target 5' gtagggcCGGCGGCGGCGGGCa 3'
1806 - 1827 159.00 -28.10
2
miRNA  3' ucUUGGAGCCGACCCCGCCCGa 5'
            |: |  | ||||||| ||| 
Target 5' cgAGGCAGGACTGGGGCTGGCg 3'
1597 - 1618 132.00 -22.30
3
miRNA  3' ucuugGAGCCG-AC-----CCCGCCCGa 5'
               ||:||: ||     ||| |||| 
Target 5' gctggCTTGGTGTGAGCCTGGGAGGGCt 3'
1147 - 1174 121.00 -21.21
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31494394 9 COSMIC
COSN30168781 17 COSMIC
COSN24390471 33 COSMIC
COSN30477661 41 COSMIC
COSN31510863 47 COSMIC
COSN30539716 97 COSMIC
COSN29195557 377 COSMIC
COSN7304260 378 COSMIC
COSN21722034 429 COSMIC
COSN27585649 583 COSMIC
COSN21990301 667 COSMIC
COSN28857868 722 COSMIC
COSN31961190 752 COSMIC
COSN20055176 776 COSMIC
COSN26552361 846 COSMIC
COSN30616208 888 COSMIC
COSN30620919 1038 COSMIC
COSN24139069 1061 COSMIC
COSN15930665 1240 COSMIC
COSN21259374 1443 COSMIC
COSN26724864 1539 COSMIC
COSN32065232 1741 COSMIC
COSN20812360 1890 COSMIC
rs11642862 390 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs751911366 3 dbSNP
rs759964633 4 dbSNP
rs767696939 6 dbSNP
rs367793448 9 dbSNP
rs1048622 12 dbSNP
rs1236518331 12 dbSNP
rs1217043062 13 dbSNP
rs35676536 13 dbSNP
rs912259911 14 dbSNP
rs201807199 16 dbSNP
rs1302488548 17 dbSNP
rs1490484308 21 dbSNP
rs1198161035 24 dbSNP
rs1388853853 29 dbSNP
rs539160259 30 dbSNP
rs1178576351 32 dbSNP
rs777940476 32 dbSNP
rs72793383 33 dbSNP
rs757247266 36 dbSNP
rs1418395335 47 dbSNP
rs1040690633 49 dbSNP
rs369342812 49 dbSNP
rs1401849678 51 dbSNP
rs779058798 53 dbSNP
rs936191598 54 dbSNP
rs1464831881 56 dbSNP
rs1377841012 60 dbSNP
rs1178017505 64 dbSNP
rs745938350 65 dbSNP
rs1054993099 67 dbSNP
rs1266352592 72 dbSNP
rs1179215549 76 dbSNP
rs770033083 79 dbSNP
rs1010295567 84 dbSNP
rs1196819820 85 dbSNP
rs1339021670 93 dbSNP
rs1256784017 95 dbSNP
rs575605764 97 dbSNP
rs907225621 98 dbSNP
rs893969380 99 dbSNP
rs1379744559 109 dbSNP
rs1010996586 113 dbSNP
rs1256191871 115 dbSNP
rs1445363449 129 dbSNP
rs1402533305 130 dbSNP
rs1304253664 143 dbSNP
rs1464198736 151 dbSNP
rs780117881 156 dbSNP
rs1158969098 160 dbSNP
rs1042538075 163 dbSNP
rs542646876 173 dbSNP
rs1378367421 181 dbSNP
rs1181037168 182 dbSNP
rs561673093 187 dbSNP
rs1004051960 190 dbSNP
rs749130886 195 dbSNP
rs1034301934 210 dbSNP
rs1482365847 211 dbSNP
rs1280140294 212 dbSNP
rs1241320721 213 dbSNP
rs1189547651 214 dbSNP
rs1250066884 218 dbSNP
rs1307681998 221 dbSNP
rs1238901506 232 dbSNP
rs1418819549 232 dbSNP
rs1160498911 233 dbSNP
rs1366105462 236 dbSNP
rs112016949 240 dbSNP
rs1393945829 244 dbSNP
rs1464955459 245 dbSNP
rs1298620211 248 dbSNP
rs1035016785 249 dbSNP
rs1284049928 263 dbSNP
rs1358335510 272 dbSNP
rs1158002823 277 dbSNP
rs1473046281 286 dbSNP
rs573437090 288 dbSNP
rs147181313 289 dbSNP
rs1422354096 295 dbSNP
rs1376088014 297 dbSNP
rs1217870762 300 dbSNP
rs1023335362 301 dbSNP
rs1436822999 309 dbSNP
rs1306365745 310 dbSNP
rs1348425074 316 dbSNP
rs1266762245 317 dbSNP
rs952613558 321 dbSNP
rs768671484 324 dbSNP
rs1307406760 327 dbSNP
rs995353154 342 dbSNP
rs1401415567 347 dbSNP
rs1338148240 357 dbSNP
rs773952370 364 dbSNP
rs540458764 367 dbSNP
rs747991959 369 dbSNP
rs1025871547 370 dbSNP
rs951206172 374 dbSNP
rs552911475 377 dbSNP
rs796780925 378 dbSNP
rs1456437473 380 dbSNP
rs370917350 381 dbSNP
rs1212612743 387 dbSNP
rs11642862 390 dbSNP
rs1478901074 392 dbSNP
rs1261505196 393 dbSNP
rs1192889641 402 dbSNP
rs760150968 403 dbSNP
rs975451424 404 dbSNP
rs922211952 408 dbSNP
rs932344534 411 dbSNP
rs936228385 412 dbSNP
rs1258101325 419 dbSNP
rs990346052 422 dbSNP
rs913430095 424 dbSNP
rs1432004133 429 dbSNP
rs946178609 430 dbSNP
rs1332818531 431 dbSNP
rs1395805438 439 dbSNP
rs1439990733 445 dbSNP
rs1393871801 446 dbSNP
rs1171409872 452 dbSNP
rs1045888001 454 dbSNP
rs878990990 458 dbSNP
rs551063836 459 dbSNP
rs1167761525 463 dbSNP
rs1478570982 464 dbSNP
rs867667895 464 dbSNP
rs776690308 468 dbSNP
rs1056160217 475 dbSNP
rs1468392790 477 dbSNP
rs1042507955 481 dbSNP
rs1199949895 482 dbSNP
rs1456221127 484 dbSNP
rs765822804 486 dbSNP
rs1166772351 489 dbSNP
rs528791810 490 dbSNP
rs1346863975 493 dbSNP
rs1354211289 494 dbSNP
rs898428729 495 dbSNP
rs995859134 496 dbSNP
rs1025500285 505 dbSNP
rs1377520559 518 dbSNP
rs902721372 520 dbSNP
rs939430908 524 dbSNP
rs1352782952 535 dbSNP
rs1398294406 541 dbSNP
rs1328444344 560 dbSNP
rs1056988095 564 dbSNP
rs1415219794 568 dbSNP
rs1438626296 571 dbSNP
rs1172141917 584 dbSNP
rs1454255349 585 dbSNP
rs895138668 590 dbSNP
rs1302532233 592 dbSNP
rs1180033884 593 dbSNP
rs1012625693 598 dbSNP
rs1456079510 600 dbSNP
rs1231750501 609 dbSNP
rs1210422050 614 dbSNP
rs886983766 615 dbSNP
rs1235918864 622 dbSNP
rs1027658383 628 dbSNP
rs563002645 630 dbSNP
rs553516913 636 dbSNP
rs1278987759 641 dbSNP
rs1449096651 642 dbSNP
rs546999275 643 dbSNP
rs1204758472 645 dbSNP
rs961544999 651 dbSNP
rs1361506110 652 dbSNP
rs1253454817 656 dbSNP
rs1417808861 656 dbSNP
rs1406634557 669 dbSNP
rs1487687500 671 dbSNP
rs1473596266 672 dbSNP
rs1019330753 677 dbSNP
rs1235375951 679 dbSNP
rs976521747 684 dbSNP
rs1029792989 686 dbSNP
rs953824763 693 dbSNP
rs1316250867 695 dbSNP
rs1213644198 705 dbSNP
rs189434372 706 dbSNP
rs1381694190 708 dbSNP
rs1291682141 713 dbSNP
rs1455944433 720 dbSNP
rs975125836 721 dbSNP
rs1300383455 723 dbSNP
rs1452316070 724 dbSNP
rs1418880958 728 dbSNP
rs1345080626 735 dbSNP
rs914924316 743 dbSNP
rs1406583523 749 dbSNP
rs138074304 750 dbSNP
rs978339837 772 dbSNP
rs1477917398 773 dbSNP
rs1172714073 776 dbSNP
rs1374613602 777 dbSNP
rs1184529851 789 dbSNP
rs1485542105 795 dbSNP
rs567576787 796 dbSNP
rs534630932 811 dbSNP
rs1182058290 812 dbSNP
rs778916863 816 dbSNP
rs1424567295 817 dbSNP
rs1322158470 819 dbSNP
rs1346969648 820 dbSNP
rs924107246 821 dbSNP
rs1032396237 822 dbSNP
rs745625768 827 dbSNP
rs772039064 831 dbSNP
rs939546453 839 dbSNP
rs1056641011 840 dbSNP
rs957713581 841 dbSNP
rs1049061376 845 dbSNP
rs990831012 846 dbSNP
rs1316884588 851 dbSNP
rs913483815 855 dbSNP
rs1439177336 856 dbSNP
rs946229144 859 dbSNP
rs764672681 860 dbSNP
rs546891184 862 dbSNP
rs928705284 867 dbSNP
rs767980922 868 dbSNP
rs1465856372 873 dbSNP
rs1300140034 876 dbSNP
rs937397163 880 dbSNP
rs1215919900 881 dbSNP
rs1350866642 883 dbSNP
rs1427718821 883 dbSNP
rs923364728 883 dbSNP
rs1246936746 884 dbSNP
rs1055872662 885 dbSNP
rs1185110638 887 dbSNP
rs1386188034 888 dbSNP
rs1005470116 890 dbSNP
rs1161933005 891 dbSNP
rs933338115 893 dbSNP
rs898515149 895 dbSNP
rs1347378953 902 dbSNP
rs1253277368 904 dbSNP
rs1225438775 906 dbSNP
rs1410829808 907 dbSNP
rs1401845042 910 dbSNP
rs776222253 912 dbSNP
rs1219751597 914 dbSNP
rs1221484746 917 dbSNP
rs761375161 918 dbSNP
rs931330118 919 dbSNP
rs544227083 922 dbSNP
rs1383172391 923 dbSNP
rs1243837288 924 dbSNP
rs1282312654 925 dbSNP
rs1446869351 928 dbSNP
rs1352730538 929 dbSNP
rs774882404 930 dbSNP
rs1296100484 931 dbSNP
rs1224334299 933 dbSNP
rs897078725 936 dbSNP
rs1277207855 937 dbSNP
rs1378011508 940 dbSNP
rs751855622 942 dbSNP
rs571471365 943 dbSNP
rs146030134 946 dbSNP
rs201124775 948 dbSNP
rs139144017 952 dbSNP
rs1193149204 958 dbSNP
rs557532416 959 dbSNP
rs953900271 960 dbSNP
rs569250802 961 dbSNP
rs899596164 962 dbSNP
rs997027225 964 dbSNP
rs1213465704 967 dbSNP
rs757706095 970 dbSNP
rs1021900773 971 dbSNP
rs1474985026 972 dbSNP
rs1241425284 988 dbSNP
rs967724309 992 dbSNP
rs1378515398 1003 dbSNP
rs1304171343 1006 dbSNP
rs1390511052 1010 dbSNP
rs1164036933 1013 dbSNP
rs1402431428 1014 dbSNP
rs1389240728 1022 dbSNP
rs143079612 1025 dbSNP
rs1432612889 1027 dbSNP
rs371727012 1030 dbSNP
rs1462959248 1035 dbSNP
rs978303792 1059 dbSNP
rs767815876 1061 dbSNP
rs1344115424 1063 dbSNP
rs1430890031 1064 dbSNP
rs987795618 1068 dbSNP
rs992711989 1069 dbSNP
rs1290086386 1072 dbSNP
rs1280012726 1074 dbSNP
rs1218014831 1076 dbSNP
rs1353441060 1080 dbSNP
rs1258474256 1089 dbSNP
rs1020556742 1092 dbSNP
rs181540872 1093 dbSNP
rs573156508 1094 dbSNP
rs967583082 1096 dbSNP
rs1412461772 1097 dbSNP
rs1413779849 1100 dbSNP
rs1298563104 1101 dbSNP
rs768658967 1102 dbSNP
rs1337325140 1106 dbSNP
rs1401817335 1106 dbSNP
rs1156962699 1111 dbSNP
rs1382694152 1111 dbSNP
rs368844573 1111 dbSNP
rs1222590569 1112 dbSNP
rs948121509 1115 dbSNP
rs1284121488 1116 dbSNP
rs981624863 1118 dbSNP
rs1049198165 1119 dbSNP
rs1474321552 1128 dbSNP
rs1257317587 1129 dbSNP
rs558777175 1137 dbSNP
rs958885294 1144 dbSNP
rs577031418 1149 dbSNP
rs909204694 1150 dbSNP
rs1260243116 1151 dbSNP
rs992023099 1154 dbSNP
rs1218083916 1163 dbSNP
rs920015026 1165 dbSNP
rs931314217 1166 dbSNP
rs940638352 1168 dbSNP
rs1047014136 1169 dbSNP
rs998127865 1174 dbSNP
rs1188848689 1185 dbSNP
rs1051359829 1189 dbSNP
rs908486584 1191 dbSNP
rs943930777 1192 dbSNP
rs889653096 1194 dbSNP
rs1040929453 1199 dbSNP
rs562723938 1201 dbSNP
rs996686987 1214 dbSNP
rs1391573252 1216 dbSNP
rs1053978206 1219 dbSNP
rs1327979546 1221 dbSNP
rs750722518 1224 dbSNP
rs1417409141 1229 dbSNP
rs893521958 1232 dbSNP
rs185087026 1233 dbSNP
rs1175246958 1245 dbSNP
rs1476599620 1246 dbSNP
rs563443239 1249 dbSNP
rs1022032825 1254 dbSNP
rs967776856 1255 dbSNP
rs1020609042 1258 dbSNP
rs967635409 1259 dbSNP
rs1003150858 1260 dbSNP
rs1160737539 1262 dbSNP
rs1373041809 1263 dbSNP
rs1433723478 1266 dbSNP
rs866223740 1267 dbSNP
rs1313070562 1268 dbSNP
rs1269329192 1269 dbSNP
rs1373053223 1274 dbSNP
rs1030683648 1275 dbSNP
rs376360885 1276 dbSNP
rs866748549 1279 dbSNP
rs11640414 1281 dbSNP
rs959164181 1292 dbSNP
rs542639916 1293 dbSNP
rs374375536 1294 dbSNP
rs1167675258 1295 dbSNP
rs1478683208 1297 dbSNP
rs1279302713 1298 dbSNP
rs1192245954 1299 dbSNP
rs1453276104 1301 dbSNP
rs920010396 1303 dbSNP
rs1435696281 1306 dbSNP
rs1272072347 1310 dbSNP
rs952777352 1311 dbSNP
rs528046164 1315 dbSNP
rs1374779028 1316 dbSNP
rs749391840 1318 dbSNP
rs908580740 1319 dbSNP
rs1233384429 1322 dbSNP
rs944022255 1326 dbSNP
rs1278297959 1327 dbSNP
rs1444694181 1329 dbSNP
rs1334202069 1339 dbSNP
rs1040978111 1344 dbSNP
rs1211894849 1345 dbSNP
rs1282798903 1346 dbSNP
rs1377587617 1347 dbSNP
rs1172352051 1348 dbSNP
rs1434591737 1351 dbSNP
rs921181334 1354 dbSNP
rs1482179222 1355 dbSNP
rs1202266708 1356 dbSNP
rs1408142939 1357 dbSNP
rs1232081874 1358 dbSNP
rs932482527 1359 dbSNP
rs1187742118 1360 dbSNP
rs1053585475 1361 dbSNP
rs190427175 1363 dbSNP
rs1277870649 1365 dbSNP
rs1178811280 1368 dbSNP
rs1354297625 1369 dbSNP
rs1392761729 1372 dbSNP
rs1348560039 1373 dbSNP
rs940773082 1373 dbSNP
rs1279197790 1375 dbSNP
rs1415587228 1376 dbSNP
rs754816424 1379 dbSNP
rs1311420405 1390 dbSNP
rs1414761010 1392 dbSNP
rs1346302529 1393 dbSNP
rs571559011 1397 dbSNP
rs532395677 1398 dbSNP
rs906239237 1399 dbSNP
rs1036333756 1401 dbSNP
rs1003203047 1412 dbSNP
rs923323469 1415 dbSNP
rs1036362143 1419 dbSNP
rs958947469 1421 dbSNP
rs1243792985 1427 dbSNP
rs1213480795 1429 dbSNP
rs1051057765 1431 dbSNP
rs778970304 1441 dbSNP
rs1337188375 1450 dbSNP
rs1291896869 1452 dbSNP
rs942505325 1454 dbSNP
rs1363019787 1457 dbSNP
rs373487580 1458 dbSNP
rs1027127966 1462 dbSNP
rs1355420665 1467 dbSNP
rs1429190136 1469 dbSNP
rs376441594 1473 dbSNP
rs952870437 1480 dbSNP
rs550774719 1487 dbSNP
rs569369282 1488 dbSNP
rs536361646 1489 dbSNP
rs1184736916 1490 dbSNP
rs976742906 1492 dbSNP
rs3747486 1493 dbSNP
rs932560716 1496 dbSNP
rs989731421 1502 dbSNP
rs1272034933 1504 dbSNP
rs566753340 1506 dbSNP
rs1308479099 1518 dbSNP
rs533891551 1521 dbSNP
rs1042196495 1522 dbSNP
rs1023854432 1524 dbSNP
rs1361829878 1531 dbSNP
rs1251112675 1534 dbSNP
rs771898821 1536 dbSNP
rs1442483294 1537 dbSNP
rs1193788421 1538 dbSNP
rs906247723 1543 dbSNP
rs1324844095 1548 dbSNP
rs1396347530 1548 dbSNP
rs939001164 1550 dbSNP
rs1166887641 1552 dbSNP
rs1054777221 1553 dbSNP
rs894735196 1554 dbSNP
rs962106473 1555 dbSNP
rs1395601768 1556 dbSNP
rs1195358579 1557 dbSNP
rs1013198547 1561 dbSNP
rs1324266148 1562 dbSNP
rs1027632944 1566 dbSNP
rs773008862 1567 dbSNP
rs1328025367 1568 dbSNP
rs1307479327 1569 dbSNP
rs1281675372 1573 dbSNP
rs923259979 1574 dbSNP
rs1324696282 1577 dbSNP
rs888652084 1586 dbSNP
rs1391653978 1588 dbSNP
rs1004328580 1591 dbSNP
rs1270945639 1597 dbSNP
rs1296296483 1598 dbSNP
rs1461304345 1601 dbSNP
rs1341704016 1604 dbSNP
rs1175472912 1606 dbSNP
rs1393396548 1608 dbSNP
rs1198207707 1611 dbSNP
rs1220277254 1612 dbSNP
rs933367917 1612 dbSNP
rs1252909308 1613 dbSNP
rs986547453 1618 dbSNP
rs558860442 1619 dbSNP
rs1258601679 1631 dbSNP
rs965392039 1632 dbSNP
rs557129102 1634 dbSNP
rs577116560 1637 dbSNP
rs1254973295 1647 dbSNP
rs977176313 1648 dbSNP
rs1028295933 1651 dbSNP
rs903727068 1652 dbSNP
rs954170178 1653 dbSNP
rs1355877913 1654 dbSNP
rs1314465200 1658 dbSNP
rs1268843993 1661 dbSNP
rs1444737913 1663 dbSNP
rs1192051378 1665 dbSNP
rs989435238 1668 dbSNP
rs915155164 1669 dbSNP
rs945201301 1676 dbSNP
rs1472376155 1678 dbSNP
rs1478595989 1681 dbSNP
rs1258710414 1682 dbSNP
rs1383135118 1683 dbSNP
rs1190507949 1685 dbSNP
rs1163301015 1689 dbSNP
rs746621092 1691 dbSNP
rs1023739341 1692 dbSNP
rs1258382280 1697 dbSNP
rs927717135 1708 dbSNP
rs1227452768 1711 dbSNP
rs1462433190 1715 dbSNP
rs905414763 1717 dbSNP
rs544428472 1719 dbSNP
rs1318931039 1720 dbSNP
rs1381775096 1726 dbSNP
rs1055272508 1727 dbSNP
rs556461788 1728 dbSNP
rs1456976183 1729 dbSNP
rs930304706 1732 dbSNP
rs1048672938 1733 dbSNP
rs1328484810 1737 dbSNP
rs1474434634 1742 dbSNP
rs888663251 1746 dbSNP
rs954963976 1751 dbSNP
rs986127630 1753 dbSNP
rs1004338453 1758 dbSNP
rs574950245 1759 dbSNP
rs1015691282 1760 dbSNP
rs910568109 1765 dbSNP
rs1233856263 1771 dbSNP
rs1267091932 1772 dbSNP
rs1348417181 1774 dbSNP
rs901278795 1775 dbSNP
rs1229578963 1780 dbSNP
rs1324617853 1781 dbSNP
rs998308931 1782 dbSNP
rs1395229747 1788 dbSNP
rs1028807141 1793 dbSNP
rs542364112 1803 dbSNP
rs979342386 1804 dbSNP
rs1460025606 1807 dbSNP
rs925115219 1813 dbSNP
rs1168818003 1821 dbSNP
rs1464039959 1826 dbSNP
rs954106315 1829 dbSNP
rs1011291694 1835 dbSNP
rs1052700362 1839 dbSNP
rs139244585 1843 dbSNP
rs528135724 1848 dbSNP
rs1454334520 1849 dbSNP
rs917651556 1850 dbSNP
rs1022224104 1854 dbSNP
rs1190027846 1856 dbSNP
rs1362606579 1860 dbSNP
rs1273531500 1867 dbSNP
rs1453662432 1874 dbSNP
rs966594650 1877 dbSNP
rs977935297 1882 dbSNP
rs1337142558 1885 dbSNP
rs1273839282 1895 dbSNP
rs927813686 1896 dbSNP
rs1234885068 1899 dbSNP
rs1371843002 1902 dbSNP
rs1305688540 1905 dbSNP
rs201312074 1906 dbSNP
rs540231576 1907 dbSNP
rs904882504 1909 dbSNP
rs916306244 1910 dbSNP
rs1354605348 1911 dbSNP
rs1168541651 1922 dbSNP
rs1415220457 1923 dbSNP
rs1435861877 1929 dbSNP
rs565207865 1937 dbSNP
rs775001716 1938 dbSNP
rs1477525621 1940 dbSNP
rs898085762 1946 dbSNP
rs993644530 1947 dbSNP
rs1279638239 1951 dbSNP
rs1435901383 1951 dbSNP
rs1355180688 1953 dbSNP
rs1211568122 1957 dbSNP
rs1236553729 1968 dbSNP
rs1208312534 1969 dbSNP
rs1048669718 1971 dbSNP
rs910150784 1976 dbSNP
rs1279229171 1977 dbSNP
rs940247907 1985 dbSNP
rs1344326496 1990 dbSNP
rs1037232260 1991 dbSNP
rs901363358 1992 dbSNP
rs998757843 1993 dbSNP
rs1377784538 2001 dbSNP
rs1281174807 2002 dbSNP
rs1332709707 2004 dbSNP
rs76853104 2006 dbSNP
rs762424582 2013 dbSNP
rs1159964311 2014 dbSNP
rs1471391715 2016 dbSNP
rs1411007389 2018 dbSNP
rs1010925454 2022 dbSNP
rs372130434 2027 dbSNP
rs1255335069 2036 dbSNP
rs1209253567 2042 dbSNP
rs568978959 2050 dbSNP
rs966689312 2051 dbSNP
rs1225727788 2054 dbSNP
rs999468933 2055 dbSNP
rs917770334 2056 dbSNP
rs1034934053 2063 dbSNP
rs1301643494 2064 dbSNP
rs1376366636 2066 dbSNP
rs1467762734 2067 dbSNP
rs1345323150 2071 dbSNP
rs1304388080 2076 dbSNP
rs1393981730 2078 dbSNP
rs960607463 2080 dbSNP
rs1390782823 2086 dbSNP
rs949144208 2087 dbSNP
rs1329403629 2088 dbSNP
rs1165121639 2092 dbSNP
rs991025730 2095 dbSNP
rs1476067552 2096 dbSNP
rs1044874746 2102 dbSNP
rs1181229988 2103 dbSNP
rs775944605 2105 dbSNP
rs1242844347 2106 dbSNP
rs1218024185 2107 dbSNP
rs1463554631 2108 dbSNP
rs1267751603 2109 dbSNP
rs1214516196 2118 dbSNP
rs1337437575 2122 dbSNP
rs150074195 2123 dbSNP
rs114343697 2124 dbSNP
rs1363261157 2127 dbSNP
rs1271485384 2129 dbSNP
rs1348218526 2130 dbSNP
rs1432276059 2130 dbSNP
rs898055701 2134 dbSNP
rs1363741923 2135 dbSNP
rs994170363 2140 dbSNP
rs907576185 2141 dbSNP
rs1326208682 2143 dbSNP
rs1051926116 2145 dbSNP
rs1347950730 2147 dbSNP
rs1163803025 2150 dbSNP
rs940342799 2158 dbSNP
rs1410522783 2162 dbSNP
rs1421585401 2168 dbSNP
rs1186523275 2172 dbSNP
rs1007641174 2173 dbSNP
rs181903935 2175 dbSNP
rs1247446457 2181 dbSNP
rs1194560252 2183 dbSNP
rs144385617 2192 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucuuggagccgACCCCGCCCGa 5'
                     | |||| ||| 
Target 5' -----------UAGGGCCGGCg 3'
1 - 11
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067869. RNA binding protein: AGO2. Condition:Ago2 IP-seq (asynchronous cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucuuggaGCCGACCCCGCCCGa 5'
                 |||| | ||||||| 
Target 5' guagggcCGGCGGCGGCGGGCa 3'
2 - 23
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
CLIP-seq Support 1 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000324685.6 | 3UTR | UAGGGCCGGCGGCGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1067869
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (asynchronous cells)
Location of target site ENST00000324685.6 | 3UTR | CGUAGGGCCGGCGGCGGCGGGCACG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
91 hsa-miR-4707-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT442514 SYT7 synaptotagmin 7 2 4
MIRT457799 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT466318 THRA thyroid hormone receptor, alpha 2 2
MIRT486129 TRAF3 TNF receptor associated factor 3 2 2
MIRT492341 SEPT8 septin 8 2 2
MIRT495690 KCNC3 potassium voltage-gated channel subfamily C member 3 2 2
MIRT496928 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT499518 MAFK MAF bZIP transcription factor K 2 2
MIRT501367 REXO1 RNA exonuclease 1 homolog 2 4
MIRT501636 PIAS4 protein inhibitor of activated STAT 4 2 4
MIRT521071 SLC25A16 solute carrier family 25 member 16 2 2
MIRT525700 PCYT2 phosphate cytidylyltransferase 2, ethanolamine 2 2
MIRT532722 DDTL D-dopachrome tautomerase like 2 2
MIRT533137 WWC1 WW and C2 domain containing 1 2 4
MIRT537288 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT570555 PHF21B PHD finger protein 21B 2 2
MIRT573469 MTRNR2L9 MT-RNR2-like 9 2 2
MIRT576750 Tmem127 transmembrane protein 127 2 2
MIRT609342 DAAM2 dishevelled associated activator of morphogenesis 2 2 2
MIRT610638 PIGM phosphatidylinositol glycan anchor biosynthesis class M 2 2
MIRT612591 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT614237 WDR53 WD repeat domain 53 2 4
MIRT622784 PGK1 phosphoglycerate kinase 1 2 2
MIRT628880 MED16 mediator complex subunit 16 2 2
MIRT629550 SPN sialophorin 2 2
MIRT634714 DDX19B DEAD-box helicase 19B 2 2
MIRT634932 GTF2H2C GTF2H2 family member C 2 4
MIRT635341 RBL1 RB transcriptional corepressor like 1 2 2
MIRT637838 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT644311 NFKBID NFKB inhibitor delta 2 2
MIRT649206 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT657262 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT658919 DPY19L4 dpy-19 like 4 2 2
MIRT663608 SEC23B Sec23 homolog B, coat complex II component 2 2
MIRT667425 MFAP2 microfibril associated protein 2 2 2
MIRT667667 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT668144 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT668540 ERGIC1 endoplasmic reticulum-golgi intermediate compartment 1 2 2
MIRT670039 NFRKB nuclear factor related to kappaB binding protein 2 2
MIRT670875 RAB10 RAB10, member RAS oncogene family 2 2
MIRT672694 ZNF677 zinc finger protein 677 2 2
MIRT673107 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT673508 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT674244 NUP62 nucleoporin 62 2 4
MIRT676541 IRGQ immunity related GTPase Q 2 2
MIRT676787 CXorf38 chromosome X open reading frame 38 2 4
MIRT677600 PRKX protein kinase, X-linked 2 2
MIRT678607 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT678940 MYADM myeloid associated differentiation marker 2 2
MIRT679104 CD99 CD99 molecule (Xg blood group) 2 2
MIRT679196 WNT2B Wnt family member 2B 2 2
MIRT679325 ZMYM4 zinc finger MYM-type containing 4 2 2
MIRT679634 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT679819 TMEM106B transmembrane protein 106B 2 2
MIRT679898 FBXO48 F-box protein 48 2 2
MIRT680579 ZNF784 zinc finger protein 784 2 2
MIRT680600 SZT2 SZT2, KICSTOR complex subunit 2 2
MIRT682991 RNF40 ring finger protein 40 2 4
MIRT683483 ZNF7 zinc finger protein 7 2 2
MIRT683681 MICA MHC class I polypeptide-related sequence A 2 2
MIRT684122 CEP104 centrosomal protein 104 2 2
MIRT684774 MYO1F myosin IF 2 2
MIRT685698 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT686471 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT687940 HMGB1 high mobility group box 1 2 2
MIRT688627 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT689110 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT690063 MBD1 methyl-CpG binding domain protein 1 2 2
MIRT691067 NUGGC nuclear GTPase, germinal center associated 2 2
MIRT691317 KIAA1841 KIAA1841 2 2
MIRT692778 SYNPO2L synaptopodin 2 like 2 2
MIRT694087 KIAA0930 KIAA0930 2 2
MIRT696148 WDR59 WD repeat domain 59 2 2
MIRT696176 GNB5 G protein subunit beta 5 2 2
MIRT696434 SUGP1 SURP and G-patch domain containing 1 2 2
MIRT697974 TSPAN6 tetraspanin 6 2 2
MIRT698917 SPEM1 spermatid maturation 1 2 2
MIRT699312 SLC35F5 solute carrier family 35 member F5 2 4
MIRT700500 PTPN4 protein tyrosine phosphatase, non-receptor type 4 2 2
MIRT700557 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT701817 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT702045 METTL21A methyltransferase like 21A 2 2
MIRT702215 LPCAT1 lysophosphatidylcholine acyltransferase 1 2 2
MIRT702337 KLHL7 kelch like family member 7 2 2
MIRT704139 DNAL1 dynein axonemal light chain 1 2 2
MIRT704189 LDHD lactate dehydrogenase D 2 2
MIRT705344 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT706097 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT709068 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT717579 VTA1 vesicle trafficking 1 2 2
MIRT722440 ZBTB7B zinc finger and BTB domain containing 7B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4707 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4707 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4707 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4707 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4707-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4707-3p Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-4707-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4707-3p Tamoxifen 2733525 NSC180973 approved resistant cell line (LCC2)
hsa-miR-4707-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4707-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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