miRTarBase - #MIRT683092


—
pre-miRNA Information
pre-miRNA hsa-mir-6509   
Genomic Coordinates chr7: 135206994 - 135207078
Description Homo sapiens miR-6509 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6509-3p
Sequence 52| UUCCACUGCCACUACCUAAUUU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs778601614 1 dbSNP
rs754554776 3 dbSNP
rs767798995 3 dbSNP
rs145322812 4 dbSNP
rs773941257 5 dbSNP
rs768273593 9 dbSNP
rs984565062 12 dbSNP
rs748872915 13 dbSNP
rs774861125 14 dbSNP
rs13241975 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PRRG4   
Synonyms PRGP4, TMG4
Description proline rich and Gla domain 4
Transcript NM_024081   
Expression
Putative miRNA Targets on PRRG4
3'UTR of PRRG4
(miRNA target sites are highlighted)		 
>PRRG4|NM_024081|3'UTR
   1 CTACCTTGTCATTTTGGTATAAGAAATTTGTGTTATTTGATAGGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCACT
  81 TTGGGAGGCCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCGGTCTCTACTAAAAATTCAAAAATTACCTAGG
 161 CGTCATGGGGCATGCCTGTAGTCCCACCTACTTGGGAGGCTGAAGCAGGAGAATTGCTCGAACCTGGGAGGCAGAGGTTG
 241 CAGTAAGCTGAGATCACGCCACTGCATTCCAGCCTGGGCGACAGAGCAAGACTCCATCTCAAAAATAAAATAAAAAAAGA
 321 AAGAAAGAAAAGAAGAAGAAAAGAGAAGAAGGAGAAGGAGATGAAGGAGGAGGAGGAGGAGAAGGAGAAGAAGAAGAAGA
 401 AGAAGACCACAAAAGACATGACTATCCAACTTTTTATGACAAACTGCAAGGAATAAAGGAAGAATAAGTCCATGTACTGT
 481 ACCACAGAAGTTCTGTCTGCATCTTGGACCTGAACTTGATCATTATCAGCTTGATAAGAGACTTTTTGACTCTATATCCT
 561 TGCAGTTAAGAAGAAAGCACTTTTTTGTAATGTTTGTTTTAATGGTTCAAAAAAAATCTTTCTTATAAAGAGCATAGGTA
 641 GAATTAGTGAACTCTTTGGATCCTTTGTACAGATAAAGGTTATAGATTTCTTGTGTTGAATATTAAAAAAGCAAGGATGT
 721 CTAACCATTAAGATTATCCAAAGTCAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGGATAGGTG
 801 GGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCAAAACCCCGTCTCTACAAAAATACAAAAGAA
 881 ATTAGCCAGACATGATGGCGGGTGCCTCTAATCCCAGCTACTGGGGAGGCTGAGGTGGGAGAATCGCTTGAACTCGGGAG
 961 GTGGAGGTTGTAGTGAGGCGAGATTGTGCCATTGCACTCCAACCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAA
1041 AAAAAAAAAAAGATTATCCAAAAAGATATTGGACCTACTCTTTCTTAGGATTTTTTTGGCGGGGGGTTAGAAATACTTCA
1121 CAGAATTTGACATTTCAGTATAAATCTGTGACCTTAATATAATCACTTGGTTTTATATGTTAAATTATTGCACAGCAGTC
1201 ATCATATTTTGCAGAGTTTAGTTCTTAACTCTTGCTGTCAGTCATGTTTTATTATAGGTAGTGGGGTCAGTAGTTTTCTT
1281 CTTCTAAAAAATACTATTTGCTATGAAGTTAGTTCTTCAGAAGATACAAGTTTGCAATGAAAAGGATTTGCAAGGGTTGT
1361 TATGCTATCAAATAAACAGACCTAAAATCTAGGAGACACTAGAACTTAATGAAGTTGCCCCTGTTACTGATTAGTAAATA
1441 CTCCCATCTTCGTTGCAAAATTATCTCTCTGTATAACTACATATGATTATTTTGAAATTTGTTAAACTTCATAAGTAATA
1521 GTTTGAGAATGTGGAAAAAGTAATTTGCTTTTCTGCTCTTAAAATAATATTGATTAATGTTACCAGAAACCTTTTGCATC
1601 TCTTAATATGTCTGAACACAAAAGGAAAACACCATAATCATATAAACCCATTCTTTGTCTCTTCTTCTAAATCATATGTA
1681 TAACCAGTTTTTCCTTAAGAATGTAGCAGCATATAAGCTATAAATTTCTGGAGTATATGCACACAAATTTATCTGGGTGG
1761 GTATGTAGGTATATGTGAGTTTGTTTCCTCTTCCAGGAGCTCAAGAAATAACATACTCCTGAAAAATAGAATAGAAATTT
1841 CTGTGCTTTATGTTTTTGCCAGGCTATTACATTTTCTTATCATTTAGGATCACTTATAAAATGATCATTGTTTATTTTGT
1921 TTTATAATTTTTACAGGAGTGAGACTGCAAACCCACATGTTTGATAGTTCCTACCAAATTAAAAGTTTAGAAAGCATAAA
2001 TCATATTACAGTGCATATGTGAGTGTATGTCTCTCTTTTAAGATGCATCATCTTAAGGCAGATAAAAGTAAGTCCTTAAT
2081 CATTACAGACTGCCAAAGACTTTATCCTTTTAGATTCTCAGTCTCTTTGTTGCTTGTTGCAAATAAATCATCTAGCAACA
2161 TTTACATTTAATTAGGAAATCTAACTTGCTTTTAAAAGTTACCCACGTTGCATATAAAAATCTTGCTATTCCTTGTGTCT
2241 TGGCTTTACATAAGCACTTTTGCTCATGTGACTTTGCACTTTGCACTTATTTTAATCCTCTTTAAAGGGCTACAGGCAAA
2321 TTCTACTTTGCCATAATCACACTAAGGCATGGAAGAACAACTTGCCCAGAATCTAGCAGGTTGGTGACAACTGGGTTTAG
2401 AATGAGTGAGCACACTTTTCTAGTCCCATGTCATGCCTATAAAATTACACTGCCTCGAATTATGAAATTCAGGGATCTTG
2481 TACATAATTCTAAGTTTGGGACAGAAATTTACAAGCATTTCTCATATATACATACATTTATATATGTACATGTTACATAT
2561 ATTTAGATGTATTCTCATATACATATGAAAATATTTATGATGAATAGAATTATAAGATATGTATGTATCTTGCACTGAAT
2641 CATAATTTGAAATATTTCATGAATTCATTTACTTCTATTGACTCCCAAAATTCTAACTGCAAGCTAGCTTCAGAACCTGT
2721 GAGAACCCCACCCCACCCAAGCAGCTGCCTAGATTTGTCTACTGCTATCATTTTGTGTAAAGCAGTTGCTCTAACTTGAA
2801 TGAGTCTAGAATTCATCATTAAGATTGTGATATTTATAGAGCATCCAATGTGGAGATCATGATACTTTAAATATAAAAAG
2881 GAAAATATGATAGAACTGTTATTGACAAATGCTTATAATGATTGAAGGGAAAGTATCTCAACATTGTATCAGTCACATAT
2961 ATTTCTGTTGCTTTCACCATTTTCTATTCCTGTTGTAAGTTTGGTGGTAGATTTAGTTTTGTTTGGTTTATCTGTTTTGT
3041 TTGTGTTTTGTCTCCTGGCAATTGATTAGTGTTAATCATTAAATCTATTTTGACACAAGGTTTTATATATAATTAGATCA
3121 GTTTTCCACTTTATTACAATTAAGAAATGAGTAAAATATGGATATAAAAGGAGAATTGGATTGAAAAGACAAATACACAT
3201 TTACAAGGTCATACCTTTGGTAGGACAGACAATTCCATATAGAATATTCTCTTTTGATAATGAAAAAAATTAAAGAGAGC
3281 ACAAACTTTGACTATGTCAAAGTATTTTTATTTTTAATTTTTTGAGACAAGGTCTTGCTCTGCTACCCAGGCTGGAGTGC
3361 AGTGGTGCAATCACAACTCACTGTAGCCTGAACTTCGGGGCTCAAGCAATCCTCCCACCTCAGCCTCCTAAGTAGCTGGG
3441 ACCACAGGTGCACCTCGGTACACCTGGCTAATTTTTGTGTTTTTTGTAGAGACAGGGTTTCACCATGTTGCCCATGCTGG
3521 TCTCTAACTCCTGAGCTCAAGGAATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACACTG
3601 GACTGCTGTGTCAAAGTTTTGCATCTTTTTTTTTTTTTTTTCCAGAAGGAGTCTCACTTTGTCACCCAGGCTGGAGTGCA
3681 GTGGAGTGATCATGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGGATTTCTCCTGCCTCAGCCTCCTGAGTAGCTGCA
3761 TTACAGGCACCTGCCAGCACGCCTTGCAAATTTTTGTATTTTTAGTGGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGT
3841 CTCAAACTCCTGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGGGCTGGGATTACAGGCGTGAGCCACTGTGCCTG
3921 GCCCCAAGTTTTGCATCTTTTAATGCCCTCTGAACAAATACATAGAGAAAACTCTCAGAACAATTAAAACCTGCAGAGCA
4001 ACAGTGTCCTCCATGTCTTAGGTTTCAAGTTTGCCTCTAAAATTCTAATCCATATTTTTCTACTTCTCAGATAATTTATG
4081 TGTGTGTACTCTTCCTAGACGTACAAGAGACTTTTTAATGCTAAATATTTGTCAGTGCTTAACAAAAACTCAATTTCACA
4161 TTACTCATATTGTTTTTGTTTTAATTGAATGTGAATTAAATTTTTATTAGTTATTTGATTTGGAATGTTATGTATGCCAT
4241 TAACACTATTAGGGGAATCTCTAGCATTTCTGTATTTTTAAAGAATTTGATTCTTTTGTAGATTCTGCCTGTGTGGTCAT
4321 TTTAAAACATGTGTGACATATATCAGTACCTTCATTCTTCTATATTTTGTGTCTCCTCCAACCTCCAACTTTTTTTGTTT
4401 TTTGAAAAATGTTTCTCTAACACCTCAACAGTTTAAGGTAATTTAGTACACATATATCAGTATTTTTGTGATCTGAAAAA
4481 GCAACCCATTTTCTAAATTCATATTTTTCCTAAAACTTTACTATGTTTTTATTTTAAGAGGTTTCCTGTTATATACACTT
4561 TTTACACATGCAAATAAACTTTATACCAAGTGAGTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuuaaUCC-AUCAC-CGUCACCUu 5'
               ||| |:| | |||||||| 
Target 5' cacccAGGCTGGAGTGCAGTGGAg 3'
 3663 - 3686 157.00 -18.70
2 
miRNA  3' uuUAAUCC-AUCACCGUCACCuu 5'
            :| ||| |:|  |||||||  
Target 5' aaGTCAGGCTGGGCGCAGTGGct 3'
 741 - 763 140.00 -18.00
3 
miRNA  3' uuuAAUCCAUCACCGUCACCUu 5'
             ||  ||| |  :|||||| 
Target 5' aatTTTTGTATTTTTAGTGGAg 3'
 3789 - 3810 139.00 -9.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30479425 6 COSMIC
COSN18736224 11 COSMIC
COSN26679840 43 COSMIC
COSN26647092 47 COSMIC
COSN30534119 60 COSMIC
COSN26990548 65 COSMIC
COSN30156179 86 COSMIC
COSN30118953 99 COSMIC
COSN30505100 108 COSMIC
COSN16699085 441 COSMIC
COSN26147201 647 COSMIC
COSN1529360 948 COSMIC
COSN1529361 1363 COSMIC
COSN10085097 1630 COSMIC
COSN8442691 2016 COSMIC
COSN32063616 2411 COSMIC
COSN5303548 2628 COSMIC
COSN28535711 2648 COSMIC
COSN1529362 3134 COSMIC
COSN5907622 3882 COSMIC
COSN22862968 4173 COSMIC
COSN17868106 4397 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs12795159 2 dbSNP
rs763551956 3 dbSNP
rs12794986 4 dbSNP
rs1389289650 5 dbSNP
rs541840147 9 dbSNP
rs1242614108 16 dbSNP
rs762466157 18 dbSNP
rs112118358 20 dbSNP
rs750890101 26 dbSNP
rs373369053 27 dbSNP
rs1278017376 29 dbSNP
rs758699262 31 dbSNP
rs776802910 33 dbSNP
rs200560709 39 dbSNP
rs532211710 47 dbSNP
rs751773526 47 dbSNP
rs755208996 48 dbSNP
rs781310369 50 dbSNP
rs1268530466 52 dbSNP
rs1247729929 56 dbSNP
rs1292052643 61 dbSNP
rs1283154682 63 dbSNP
rs972534602 64 dbSNP
rs995094620 78 dbSNP
rs12795035 79 dbSNP
rs1330184923 88 dbSNP
rs1409698716 89 dbSNP
rs745975706 95 dbSNP
rs1027023708 99 dbSNP
rs765424753 100 dbSNP
rs1382636969 105 dbSNP
rs950729812 117 dbSNP
rs1296602304 127 dbSNP
rs866100948 129 dbSNP
rs1413323434 130 dbSNP
rs530903376 139 dbSNP
rs909198507 143 dbSNP
rs757294293 144 dbSNP
rs773224839 163 dbSNP
rs925799865 168 dbSNP
rs1224425997 171 dbSNP
rs575667923 178 dbSNP
rs12795430 191 dbSNP
rs1053021271 197 dbSNP
rs766281046 207 dbSNP
rs1352244989 208 dbSNP
rs181339218 209 dbSNP
rs949959855 211 dbSNP
rs1228322604 220 dbSNP
rs1349170347 221 dbSNP
rs949645123 234 dbSNP
rs1405903975 235 dbSNP
rs1349555386 243 dbSNP
rs1045399300 246 dbSNP
rs111804592 258 dbSNP
rs546853914 259 dbSNP
rs1001013723 276 dbSNP
rs570532671 280 dbSNP
rs528117293 281 dbSNP
rs1404896672 282 dbSNP
rs1201370306 288 dbSNP
rs1162765505 290 dbSNP
rs1245867305 307 dbSNP
rs1006540478 312 dbSNP
rs1218942952 312 dbSNP
rs1268286577 312 dbSNP
rs1019305896 316 dbSNP
rs901058357 317 dbSNP
rs370183562 325 dbSNP
rs534557876 325 dbSNP
rs1224616408 328 dbSNP
rs1025897664 330 dbSNP
rs995438824 334 dbSNP
rs779555759 338 dbSNP
rs985268296 343 dbSNP
rs1327240090 344 dbSNP
rs1454345314 347 dbSNP
rs1455683129 353 dbSNP
rs1315710233 359 dbSNP
rs1378334926 362 dbSNP
rs1178530435 363 dbSNP
rs1408340367 363 dbSNP
rs775863745 363 dbSNP
rs1391506442 365 dbSNP
rs1414911911 365 dbSNP
rs144258001 365 dbSNP
rs67566376 365 dbSNP
rs776556583 368 dbSNP
rs1316930295 371 dbSNP
rs950940942 373 dbSNP
rs1463182613 374 dbSNP
rs959460898 374 dbSNP
rs1244389843 375 dbSNP
rs1211446188 376 dbSNP
rs1009122575 377 dbSNP
rs1277026128 377 dbSNP
rs1340371035 377 dbSNP
rs1463854714 379 dbSNP
rs373359897 380 dbSNP
rs1018867153 382 dbSNP
rs376375564 383 dbSNP
rs1390510696 386 dbSNP
rs368079059 386 dbSNP
rs371067341 386 dbSNP
rs924090421 386 dbSNP
rs949634389 386 dbSNP
rs978346261 386 dbSNP
rs547857586 389 dbSNP
rs748951528 391 dbSNP
rs1033533810 392 dbSNP
rs1185796027 395 dbSNP
rs1181929519 397 dbSNP
rs139653878 398 dbSNP
rs373612867 405 dbSNP
rs376181665 406 dbSNP
rs1207193667 408 dbSNP
rs1472759234 412 dbSNP
rs1483600100 419 dbSNP
rs568185922 423 dbSNP
rs1226464183 425 dbSNP
rs1361855274 427 dbSNP
rs1313602529 430 dbSNP
rs774254039 439 dbSNP
rs942437101 439 dbSNP
rs1352892471 442 dbSNP
rs1410281789 451 dbSNP
rs1301043605 458 dbSNP
rs900880558 465 dbSNP
rs554695989 474 dbSNP
rs913081296 476 dbSNP
rs1307178536 478 dbSNP
rs949907046 480 dbSNP
rs1386687554 483 dbSNP
rs1025591077 484 dbSNP
rs1422760406 486 dbSNP
rs537966116 489 dbSNP
rs1410929298 494 dbSNP
rs1179479346 496 dbSNP
rs888259583 511 dbSNP
rs981366157 518 dbSNP
rs7933966 525 dbSNP
rs540969435 534 dbSNP
rs1358296252 535 dbSNP
rs1038106750 543 dbSNP
rs959408952 543 dbSNP
rs112054545 552 dbSNP
rs1205789442 561 dbSNP
rs1024922172 564 dbSNP
rs1320019945 566 dbSNP
rs1281164819 573 dbSNP
rs1230226730 574 dbSNP
rs970730084 592 dbSNP
rs1287548108 595 dbSNP
rs1407737747 596 dbSNP
rs1392569254 597 dbSNP
rs929755263 599 dbSNP
rs1048339525 604 dbSNP
rs1457046947 605 dbSNP
rs1347618073 609 dbSNP
rs1473237943 609 dbSNP
rs572343960 609 dbSNP
rs924191430 609 dbSNP
rs772438228 615 dbSNP
rs1009094801 616 dbSNP
rs936935103 618 dbSNP
rs1056336 619 dbSNP
rs1487588717 631 dbSNP
rs539768251 655 dbSNP
rs989632639 656 dbSNP
rs1286133277 660 dbSNP
rs900492065 664 dbSNP
rs1483658175 667 dbSNP
rs773811859 670 dbSNP
rs1033025255 672 dbSNP
rs1226450474 683 dbSNP
rs942425645 704 dbSNP
rs1301640986 706 dbSNP
rs1056337 712 dbSNP
rs114582789 725 dbSNP
rs1442152762 727 dbSNP
rs1365031370 733 dbSNP
rs796598566 735 dbSNP
rs988912310 741 dbSNP
rs1387219272 747 dbSNP
rs1020097470 749 dbSNP
rs1471208996 755 dbSNP
rs573041139 756 dbSNP
rs1378577773 757 dbSNP
rs981356267 767 dbSNP
rs550448134 768 dbSNP
rs1264087046 771 dbSNP
rs936977521 775 dbSNP
rs1464522664 783 dbSNP
rs974118408 790 dbSNP
rs1047188173 792 dbSNP
rs888335801 794 dbSNP
rs1256425521 795 dbSNP
rs1232227010 796 dbSNP
rs1173321775 799 dbSNP
rs1310111741 800 dbSNP
rs1299399210 804 dbSNP
rs919622131 805 dbSNP
rs929677069 817 dbSNP
rs1363847134 820 dbSNP
rs1317873175 821 dbSNP
rs1055628596 822 dbSNP
rs1403507714 844 dbSNP
rs1172400556 847 dbSNP
rs1464885910 848 dbSNP
rs1392361938 851 dbSNP
rs112690216 858 dbSNP
rs886605807 859 dbSNP
rs1371064411 866 dbSNP
rs575338584 872 dbSNP
rs1256730203 888 dbSNP
rs1305644241 892 dbSNP
rs1346784830 893 dbSNP
rs1276437547 897 dbSNP
rs1228686333 898 dbSNP
rs776663361 900 dbSNP
rs544258225 901 dbSNP
rs988681843 904 dbSNP
rs564354582 905 dbSNP
rs999502696 907 dbSNP
rs1394746538 923 dbSNP
rs1372805559 924 dbSNP
rs996458910 926 dbSNP
rs1031430180 930 dbSNP
rs1368920237 932 dbSNP
rs914399350 937 dbSNP
rs1033384921 946 dbSNP
rs893142764 947 dbSNP
rs1367912610 949 dbSNP
rs765370357 954 dbSNP
rs1199891549 957 dbSNP
rs1253790845 959 dbSNP
rs1020421251 966 dbSNP
rs1476947266 967 dbSNP
rs971203035 976 dbSNP
rs1211216353 978 dbSNP
rs185862403 980 dbSNP
rs1243342230 981 dbSNP
rs911387422 983 dbSNP
rs1390483922 992 dbSNP
rs1289427283 994 dbSNP
rs1034197491 995 dbSNP
rs1409564965 1010 dbSNP
rs958848795 1011 dbSNP
rs1325795219 1013 dbSNP
rs1406107583 1015 dbSNP
rs540448084 1019 dbSNP
rs1390113983 1025 dbSNP
rs1161530363 1027 dbSNP
rs1166585184 1027 dbSNP
rs1459863309 1029 dbSNP
rs1414053716 1030 dbSNP
rs1491145956 1030 dbSNP
rs1207532517 1031 dbSNP
rs1269352595 1031 dbSNP
rs1389914356 1031 dbSNP
rs1472155735 1031 dbSNP
rs1491238011 1031 dbSNP
rs34159502 1031 dbSNP
rs761460182 1031 dbSNP
rs761609231 1031 dbSNP
rs964236221 1031 dbSNP
rs1349027455 1033 dbSNP
rs1276906800 1052 dbSNP
rs1366929295 1052 dbSNP
rs947311144 1053 dbSNP
rs974020927 1054 dbSNP
rs1321721969 1055 dbSNP
rs919552430 1057 dbSNP
rs951117665 1059 dbSNP
rs1389409485 1061 dbSNP
rs976481374 1063 dbSNP
rs982919594 1065 dbSNP
rs114207058 1066 dbSNP
rs778806366 1070 dbSNP
rs1300277607 1092 dbSNP
rs1245741183 1101 dbSNP
rs922323655 1101 dbSNP
rs943802744 1101 dbSNP
rs752850490 1102 dbSNP
rs1273061877 1103 dbSNP
rs929729438 1105 dbSNP
rs1208650967 1107 dbSNP
rs980034175 1108 dbSNP
rs746395780 1118 dbSNP
rs1315652609 1127 dbSNP
rs922104761 1131 dbSNP
rs932189295 1153 dbSNP
rs1361736548 1155 dbSNP
rs1344627565 1164 dbSNP
rs1210486482 1171 dbSNP
rs1230813556 1185 dbSNP
rs1267011516 1188 dbSNP
rs1252516619 1216 dbSNP
rs1319972114 1218 dbSNP
rs1054750757 1222 dbSNP
rs1434363523 1223 dbSNP
rs758587845 1230 dbSNP
rs1335983975 1238 dbSNP
rs1010263347 1265 dbSNP
rs1414852407 1267 dbSNP
rs1424142139 1280 dbSNP
rs1041813733 1288 dbSNP
rs1450871614 1292 dbSNP
rs941279477 1296 dbSNP
rs1248434153 1298 dbSNP
rs1055665119 1304 dbSNP
rs560871632 1313 dbSNP
rs189782675 1316 dbSNP
rs1211383661 1318 dbSNP
rs1014017281 1319 dbSNP
rs1002977215 1325 dbSNP
rs1034146637 1326 dbSNP
rs1242501844 1327 dbSNP
rs958574286 1330 dbSNP
rs1230975428 1334 dbSNP
rs1343127909 1344 dbSNP
rs1458018368 1351 dbSNP
rs1226239536 1354 dbSNP
rs1381381072 1357 dbSNP
rs1285904761 1359 dbSNP
rs373975146 1360 dbSNP
rs767349066 1364 dbSNP
rs758834315 1365 dbSNP
rs995826216 1385 dbSNP
rs906595479 1392 dbSNP
rs1387873403 1397 dbSNP
rs1167457696 1398 dbSNP
rs1402101334 1398 dbSNP
rs1026926713 1401 dbSNP
rs1415263299 1406 dbSNP
rs1182955829 1421 dbSNP
rs1472755767 1422 dbSNP
rs139967786 1425 dbSNP
rs958315573 1429 dbSNP
rs780460603 1433 dbSNP
rs982384455 1435 dbSNP
rs1366417359 1446 dbSNP
rs76845998 1448 dbSNP
rs965057600 1452 dbSNP
rs975138679 1453 dbSNP
rs1296107426 1464 dbSNP
rs530639406 1464 dbSNP
rs932209365 1467 dbSNP
rs755802990 1468 dbSNP
rs1181451350 1485 dbSNP
rs976889747 1486 dbSNP
rs1342770288 1490 dbSNP
rs922768154 1493 dbSNP
rs951159711 1495 dbSNP
rs1351183108 1504 dbSNP
rs1354275953 1512 dbSNP
rs1207150271 1519 dbSNP
rs550669085 1520 dbSNP
rs879042226 1527 dbSNP
rs879317305 1531 dbSNP
rs1184921698 1534 dbSNP
rs1055100259 1539 dbSNP
rs1464310755 1575 dbSNP
rs1473138175 1575 dbSNP
rs1175702732 1577 dbSNP
rs570542708 1578 dbSNP
rs946306395 1586 dbSNP
rs112424589 1587 dbSNP
rs1220901935 1600 dbSNP
rs539682693 1608 dbSNP
rs546468935 1609 dbSNP
rs531609744 1620 dbSNP
rs1041717180 1622 dbSNP
rs1230100030 1630 dbSNP
rs180966273 1643 dbSNP
rs200019811 1649 dbSNP
rs555743090 1653 dbSNP
rs1306021531 1656 dbSNP
rs1389376985 1660 dbSNP
rs575198979 1662 dbSNP
rs1369261595 1680 dbSNP
rs907205789 1700 dbSNP
rs1002925076 1704 dbSNP
rs1055923914 1712 dbSNP
rs1435173149 1734 dbSNP
rs894280256 1734 dbSNP
rs1391593766 1736 dbSNP
rs1055404013 1737 dbSNP
rs1458164818 1743 dbSNP
rs995379443 1747 dbSNP
rs1457099093 1752 dbSNP
rs1027246134 1758 dbSNP
rs16923607 1761 dbSNP
rs149859005 1762 dbSNP
rs1397146697 1764 dbSNP
rs1467213047 1766 dbSNP
rs1249904969 1770 dbSNP
rs1210587901 1777 dbSNP
rs1465282803 1796 dbSNP
rs12365248 1806 dbSNP
rs1019203773 1807 dbSNP
rs1236579724 1816 dbSNP
rs1338817047 1819 dbSNP
rs1313701724 1828 dbSNP
rs1301575626 1834 dbSNP
rs1230275699 1852 dbSNP
rs1233041876 1859 dbSNP
rs76346588 1864 dbSNP
rs201067338 1865 dbSNP
rs5790906 1865 dbSNP
rs764001887 1865 dbSNP
rs202127021 1866 dbSNP
rs747714630 1872 dbSNP
rs965047412 1873 dbSNP
rs900052644 1875 dbSNP
rs1483428345 1894 dbSNP
rs998476372 1897 dbSNP
rs577700703 1903 dbSNP
rs975131951 1906 dbSNP
rs1199836831 1911 dbSNP
rs1175642042 1921 dbSNP
rs1253960112 1928 dbSNP
rs1452806252 1935 dbSNP
rs1392166098 1937 dbSNP
rs1189274786 1940 dbSNP
rs1439098604 1941 dbSNP
rs1028098185 1946 dbSNP
rs953660773 1947 dbSNP
rs1471413068 1957 dbSNP
rs1256298296 1975 dbSNP
rs1209788043 1976 dbSNP
rs1345273794 1993 dbSNP
rs1299233680 2000 dbSNP
rs951659790 2014 dbSNP
rs1325309745 2019 dbSNP
rs1294090070 2020 dbSNP
rs1178083450 2045 dbSNP
rs548021076 2046 dbSNP
rs540859792 2051 dbSNP
rs1403438514 2056 dbSNP
rs1312639358 2060 dbSNP
rs1433150836 2069 dbSNP
rs1379761632 2080 dbSNP
rs982532821 2083 dbSNP
rs1017069055 2085 dbSNP
rs748898350 2089 dbSNP
rs990308293 2128 dbSNP
rs1190945709 2137 dbSNP
rs1425478046 2159 dbSNP
rs755636073 2166 dbSNP
rs1186929427 2200 dbSNP
rs1484507064 2203 dbSNP
rs560514828 2207 dbSNP
rs1411813875 2216 dbSNP
rs1205364714 2222 dbSNP
rs1338197467 2225 dbSNP
rs991080121 2228 dbSNP
rs1249043319 2238 dbSNP
rs1247700688 2244 dbSNP
rs946242266 2250 dbSNP
rs949969967 2251 dbSNP
rs574276156 2261 dbSNP
rs1303628992 2263 dbSNP
rs1413358634 2268 dbSNP
rs1312603592 2271 dbSNP
rs1308885590 2277 dbSNP
rs1409540486 2279 dbSNP
rs1394501112 2311 dbSNP
rs924458178 2317 dbSNP
rs1459421746 2333 dbSNP
rs934513471 2345 dbSNP
rs928613547 2348 dbSNP
rs1254241198 2360 dbSNP
rs938686546 2362 dbSNP
rs946792442 2367 dbSNP
rs1436849396 2375 dbSNP
rs542910275 2381 dbSNP
rs561691001 2389 dbSNP
rs1250453954 2407 dbSNP
rs1481763300 2416 dbSNP
rs998425472 2422 dbSNP
rs754646193 2424 dbSNP
rs1267584572 2428 dbSNP
rs548263009 2429 dbSNP
rs1378007627 2431 dbSNP
rs1441825297 2435 dbSNP
rs550582513 2436 dbSNP
rs1175787015 2437 dbSNP
rs1048184717 2449 dbSNP
rs1164142710 2451 dbSNP
rs747626924 2455 dbSNP
rs1004076196 2457 dbSNP
rs564212520 2458 dbSNP
rs1469346225 2460 dbSNP
rs1361738872 2481 dbSNP
rs1019528173 2484 dbSNP
rs1200491514 2485 dbSNP
rs1468551541 2491 dbSNP
rs1251765841 2494 dbSNP
rs1212445442 2500 dbSNP
rs1169733833 2503 dbSNP
rs1466625629 2503 dbSNP
rs1223542735 2509 dbSNP
rs1348933276 2510 dbSNP
rs900830937 2512 dbSNP
rs566572378 2513 dbSNP
rs1370344399 2515 dbSNP
rs566382879 2532 dbSNP
rs996498848 2536 dbSNP
rs1390705062 2539 dbSNP
rs1370066174 2542 dbSNP
rs1399919377 2544 dbSNP
rs1408048282 2546 dbSNP
rs1295558723 2547 dbSNP
rs1382441280 2550 dbSNP
rs1173977763 2561 dbSNP
rs1454447155 2564 dbSNP
rs1394016451 2571 dbSNP
rs1368560135 2577 dbSNP
rs1191176790 2592 dbSNP
rs1372880156 2592 dbSNP
rs1243227423 2596 dbSNP
rs1386071172 2597 dbSNP
rs991240417 2598 dbSNP
rs1445647948 2605 dbSNP
rs771681134 2606 dbSNP
rs1281082960 2614 dbSNP
rs532883924 2615 dbSNP
rs1367030978 2620 dbSNP
rs1347410906 2639 dbSNP
rs971068678 2646 dbSNP
rs369679588 2650 dbSNP
rs186342762 2656 dbSNP
rs981308176 2667 dbSNP
rs1028422301 2677 dbSNP
rs957790491 2682 dbSNP
rs772530010 2686 dbSNP
rs1273784283 2690 dbSNP
rs1429861841 2694 dbSNP
rs989638114 2702 dbSNP
rs1408528245 2703 dbSNP
rs1343286499 2709 dbSNP
rs934608154 2718 dbSNP
rs990356756 2722 dbSNP
rs1223106601 2732 dbSNP
rs914414951 2743 dbSNP
rs532273486 2744 dbSNP
rs1419531696 2757 dbSNP
rs1487954612 2757 dbSNP
rs1039838706 2764 dbSNP
rs1474710489 2768 dbSNP
rs1239639462 2778 dbSNP
rs921247474 2785 dbSNP
rs761284 2790 dbSNP
rs1278487371 2794 dbSNP
rs967573502 2796 dbSNP
rs1207491911 2797 dbSNP
rs535755032 2802 dbSNP
rs192349382 2819 dbSNP
rs928898524 2822 dbSNP
rs1272377011 2826 dbSNP
rs1213976529 2827 dbSNP
rs568788565 2838 dbSNP
rs991479910 2840 dbSNP
rs1038942722 2850 dbSNP
rs898703437 2851 dbSNP
rs570431543 2854 dbSNP
rs1221336041 2858 dbSNP
rs1354677095 2873 dbSNP
rs1169117681 2875 dbSNP
rs1408765614 2879 dbSNP
rs1416631301 2880 dbSNP
rs1012609869 2883 dbSNP
rs1022694885 2884 dbSNP
rs771137050 2887 dbSNP
rs915897247 2889 dbSNP
rs753429922 2890 dbSNP
rs556177945 2892 dbSNP
rs931379452 2896 dbSNP
rs1202485537 2902 dbSNP
rs1350477278 2903 dbSNP
rs1274997153 2906 dbSNP
rs1002924300 2910 dbSNP
rs1333890531 2915 dbSNP
rs1291205614 2920 dbSNP
rs557718550 2928 dbSNP
rs1457606695 2930 dbSNP
rs574523942 2942 dbSNP
rs1048990157 2968 dbSNP
rs1297209373 2979 dbSNP
rs1439423324 2985 dbSNP
rs1351059110 2987 dbSNP
rs777171241 2991 dbSNP
rs1367143292 2993 dbSNP
rs939882667 3007 dbSNP
rs1416224160 3033 dbSNP
rs1161802071 3036 dbSNP
rs1435515646 3036 dbSNP
rs990116955 3046 dbSNP
rs1407565311 3053 dbSNP
rs1040928117 3059 dbSNP
rs901069556 3061 dbSNP
rs996737312 3072 dbSNP
rs1253627515 3075 dbSNP
rs964563830 3106 dbSNP
rs1467965385 3108 dbSNP
rs1271089804 3110 dbSNP
rs1049368283 3111 dbSNP
rs893473853 3121 dbSNP
rs1317241893 3122 dbSNP
rs1362934014 3124 dbSNP
rs974591546 3136 dbSNP
rs1010649007 3142 dbSNP
rs1372627667 3145 dbSNP
rs1021164183 3161 dbSNP
rs967524795 3171 dbSNP
rs759786326 3172 dbSNP
rs934068687 3179 dbSNP
rs1392885219 3195 dbSNP
rs1320543792 3206 dbSNP
rs1454657190 3216 dbSNP
rs1218972000 3221 dbSNP
rs1157205020 3231 dbSNP
rs2419773 3237 dbSNP
rs533987439 3241 dbSNP
rs866331158 3250 dbSNP
rs1466571775 3255 dbSNP
rs992158879 3267 dbSNP
rs940260815 3269 dbSNP
rs1251086559 3281 dbSNP
rs915905027 3290 dbSNP
rs1486073925 3296 dbSNP
rs952862307 3297 dbSNP
rs1213283104 3305 dbSNP
rs1349568655 3312 dbSNP
rs79332739 3323 dbSNP
rs1184049911 3328 dbSNP
rs1013016701 3330 dbSNP
rs1232964198 3339 dbSNP
rs1368092887 3341 dbSNP
rs370478179 3343 dbSNP
rs1383204931 3361 dbSNP
rs1414663472 3365 dbSNP
rs1361783289 3366 dbSNP
rs984202493 3368 dbSNP
rs1287473736 3377 dbSNP
rs1044556335 3378 dbSNP
rs906928035 3394 dbSNP
rs118164500 3398 dbSNP
rs762925785 3412 dbSNP
rs574126159 3418 dbSNP
rs1040832727 3440 dbSNP
rs1195323287 3443 dbSNP
rs1429034635 3449 dbSNP
rs1260835465 3451 dbSNP
rs1486504870 3454 dbSNP
rs1457629455 3457 dbSNP
rs1319644416 3458 dbSNP
rs543186769 3467 dbSNP
rs1209641853 3469 dbSNP
rs556932866 3471 dbSNP
rs145459216 3478 dbSNP
rs932553817 3484 dbSNP
rs544272100 3495 dbSNP
rs1021528916 3502 dbSNP
rs1293930619 3508 dbSNP
rs1050143643 3515 dbSNP
rs893471337 3520 dbSNP
rs1226098127 3526 dbSNP
rs974537413 3531 dbSNP
rs1398798574 3536 dbSNP
rs1168544701 3538 dbSNP
rs1462466312 3542 dbSNP
rs34196291 3543 dbSNP
rs1168383898 3545 dbSNP
rs1476075141 3549 dbSNP
rs1227325883 3550 dbSNP
rs1257888287 3556 dbSNP
rs1186869566 3557 dbSNP
rs1484479813 3558 dbSNP
rs1042087753 3563 dbSNP
rs200434873 3569 dbSNP
rs1445592616 3570 dbSNP
rs1338134919 3574 dbSNP
rs539916014 3576 dbSNP
rs1212908201 3581 dbSNP
rs1336004414 3583 dbSNP
rs1238532856 3586 dbSNP
rs1231739593 3591 dbSNP
rs112070653 3595 dbSNP
rs1337720306 3599 dbSNP
rs1329739277 3608 dbSNP
rs1390911132 3609 dbSNP
rs1483000058 3611 dbSNP
rs1329239189 3624 dbSNP
rs1365216682 3626 dbSNP
rs1471629672 3626 dbSNP
rs372321215 3626 dbSNP
rs879168724 3626 dbSNP
rs80345377 3627 dbSNP
rs986940185 3641 dbSNP
rs34587471 3642 dbSNP
rs1448188561 3643 dbSNP
rs1414186775 3644 dbSNP
rs761283 3654 dbSNP
rs747727576 3673 dbSNP
rs1469286195 3677 dbSNP
rs1272988217 3678 dbSNP
rs536393750 3689 dbSNP
rs1035824043 3694 dbSNP
rs1280368603 3695 dbSNP
rs960229255 3703 dbSNP
rs1158640971 3704 dbSNP
rs529102607 3711 dbSNP
rs974500668 3712 dbSNP
rs920150052 3717 dbSNP
rs760697676 3725 dbSNP
rs1325095338 3726 dbSNP
rs548748704 3729 dbSNP
rs1204321184 3736 dbSNP
rs1386794298 3737 dbSNP
rs1158853960 3749 dbSNP
rs1469296232 3758 dbSNP
rs1377999457 3760 dbSNP
rs1044505451 3764 dbSNP
rs1454300383 3768 dbSNP
rs11032026 3778 dbSNP
rs1358497191 3780 dbSNP
rs1445260792 3781 dbSNP
rs1282616430 3782 dbSNP
rs1235160683 3785 dbSNP
rs199742058 3786 dbSNP
rs1309321265 3788 dbSNP
rs1302602513 3790 dbSNP
rs952729372 3797 dbSNP
rs1328040174 3799 dbSNP
rs536140666 3799 dbSNP
rs1318700511 3809 dbSNP
rs753607368 3811 dbSNP
rs961403641 3823 dbSNP
rs1408863942 3825 dbSNP
rs1358263645 3849 dbSNP
rs1175073499 3850 dbSNP
rs976815892 3855 dbSNP
rs1434808843 3856 dbSNP
rs1286034614 3866 dbSNP
rs1349042722 3867 dbSNP
rs1190050614 3868 dbSNP
rs183249014 3868 dbSNP
rs765359454 3871 dbSNP
rs1243107566 3872 dbSNP
rs1192887457 3887 dbSNP
rs922433827 3888 dbSNP
rs1259903659 3891 dbSNP
rs932518465 3895 dbSNP
rs891557385 3902 dbSNP
rs1049649716 3904 dbSNP
rs1209280260 3905 dbSNP
rs915113272 3908 dbSNP
rs1217454567 3909 dbSNP
rs1011212787 3910 dbSNP
rs1254095720 3911 dbSNP
rs1429793291 3912 dbSNP
rs573217130 3918 dbSNP
rs946672216 3925 dbSNP
rs1314331377 3940 dbSNP
rs1181782514 3941 dbSNP
rs1042033636 3947 dbSNP
rs902185903 3949 dbSNP
rs1412171878 3958 dbSNP
rs939074784 3963 dbSNP
rs1231376219 3964 dbSNP
rs1056265107 3965 dbSNP
rs1167796011 3973 dbSNP
rs1477054172 3982 dbSNP
rs1420392194 3992 dbSNP
rs1021306495 3997 dbSNP
rs1485454836 4002 dbSNP
rs1235844767 4012 dbSNP
rs531499528 4022 dbSNP
rs1273641699 4029 dbSNP
rs1217859650 4033 dbSNP
rs1315903350 4034 dbSNP
rs900378502 4042 dbSNP
rs1233579650 4047 dbSNP
rs1354399168 4050 dbSNP
rs996132930 4052 dbSNP
rs1443770650 4055 dbSNP
rs1354558718 4060 dbSNP
rs1030161016 4063 dbSNP
rs1464517354 4064 dbSNP
rs1424125292 4070 dbSNP
rs1166066533 4073 dbSNP
rs1475061508 4079 dbSNP
rs188666321 4082 dbSNP
rs551364648 4083 dbSNP
rs1013529212 4086 dbSNP
rs1470555010 4088 dbSNP
rs1232365352 4089 dbSNP
rs1197993359 4092 dbSNP
rs112385387 4101 dbSNP
rs12786991 4102 dbSNP
rs1326509934 4104 dbSNP
rs1320842055 4106 dbSNP
rs554003271 4108 dbSNP
rs567733855 4109 dbSNP
rs536487094 4110 dbSNP
rs1307869711 4112 dbSNP
rs1445267904 4119 dbSNP
rs948971616 4130 dbSNP
rs1367277663 4135 dbSNP
rs1348429707 4136 dbSNP
rs976804618 4140 dbSNP
rs980356259 4154 dbSNP
rs757789568 4168 dbSNP
rs1277354705 4169 dbSNP
rs953891311 4169 dbSNP
rs1455615301 4171 dbSNP
rs1254842899 4178 dbSNP
rs57091563 4186 dbSNP
rs1053708805 4196 dbSNP
rs1263453185 4200 dbSNP
rs1217573628 4203 dbSNP
rs915080245 4207 dbSNP
rs57686372 4224 dbSNP
rs891509651 4226 dbSNP
rs1204512137 4232 dbSNP
rs947125665 4233 dbSNP
rs554122000 4258 dbSNP
rs946589364 4259 dbSNP
rs1237350764 4264 dbSNP
rs1372466824 4267 dbSNP
rs1304811157 4276 dbSNP
rs1386696136 4277 dbSNP
rs1453548075 4297 dbSNP
rs191765733 4312 dbSNP
rs1454541886 4321 dbSNP
rs978035081 4328 dbSNP
rs1042739956 4329 dbSNP
rs1157034444 4333 dbSNP
rs900201749 4340 dbSNP
rs1395696612 4342 dbSNP
rs1190485291 4353 dbSNP
rs545945522 4356 dbSNP
rs866040716 4364 dbSNP
rs1390696396 4375 dbSNP
rs564541907 4382 dbSNP
rs1165653762 4385 dbSNP
rs1392182946 4387 dbSNP
rs1486044197 4390 dbSNP
rs548119752 4390 dbSNP
rs577645983 4390 dbSNP
rs1262035196 4391 dbSNP
rs879092420 4392 dbSNP
rs939022276 4393 dbSNP
rs1280400154 4397 dbSNP
rs1322419010 4410 dbSNP
rs1298322961 4411 dbSNP
rs1310929863 4411 dbSNP
rs1004692665 4414 dbSNP
rs1340233255 4425 dbSNP
rs1015180013 4438 dbSNP
rs576010168 4440 dbSNP
rs1416851739 4446 dbSNP
rs1439135401 4449 dbSNP
rs961445724 4457 dbSNP
rs1302314772 4460 dbSNP
rs1464573020 4464 dbSNP
rs1375878717 4472 dbSNP
rs1172373541 4476 dbSNP
rs1428899621 4481 dbSNP
rs995590130 4482 dbSNP
rs754701138 4484 dbSNP
rs1486434448 4487 dbSNP
rs1257648941 4489 dbSNP
rs1199422294 4502 dbSNP
rs112233605 4503 dbSNP
rs894857964 4504 dbSNP
rs1366558281 4513 dbSNP
rs1227258160 4522 dbSNP
rs1228713424 4537 dbSNP
rs1268506295 4547 dbSNP
rs970054812 4557 dbSNP
rs947849637 4558 dbSNP
rs1044920852 4585 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067869. RNA binding protein: AGO2. Condition:Ago2 IP-seq (asynchronous cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uuuaaUCC-AUCAC-CGUCACCUu 5'
               ||| |:| | |||||||| 
Target 5' ---ccAGGCUGGAGUGCAGUGGAg 3'
 		1 - 21
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
CLIP-seq Support 1 for dataset GSM1067869
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (asynchronous cells)
Location of target site ENST00000257836.3 | 3UTR | CCAGGCUGGAGUGCAGUGGAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-6509-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055374 PDCD4 programmed cell death 4 2 4
MIRT378341 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT444668 CDKL2 cyclin dependent kinase like 2 2 2
MIRT446953 CD248 CD248 molecule 2 2
MIRT460332 CAMK4 calcium/calmodulin dependent protein kinase IV 2 6
MIRT464078 VPS4A vacuolar protein sorting 4 homolog A 2 2
MIRT464586 UBN2 ubinuclein 2 2 2
MIRT468482 SESN3 sestrin 3 2 2
MIRT468962 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT475455 HSPA8 heat shock protein family A (Hsp70) member 8 2 2
MIRT482403 ADRB1 adrenoceptor beta 1 2 10
MIRT486992 ZFAND2B zinc finger AN1-type containing 2B 2 2
MIRT489397 TUBB2A tubulin beta 2A class IIa 2 2
MIRT526319 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526560 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526732 ZNF138 zinc finger protein 138 2 8
MIRT531581 STXBP5L syntaxin binding protein 5 like 2 2
MIRT532011 NOX5 NADPH oxidase 5 2 2
MIRT533407 TXLNG taxilin gamma 2 2
MIRT533436 TRPC5 transient receptor potential cation channel subfamily C member 5 2 2
MIRT533866 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT539254 ANKRD50 ankyrin repeat domain 50 2 2
MIRT541451 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT566794 MIER3 MIER family member 3 2 2
MIRT569294 SURF6 surfeit 6 2 2
MIRT571336 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT572802 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT572813 MYO1C myosin IC 2 2
MIRT574219 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT607259 GRAMD1B GRAM domain containing 1B 2 4
MIRT609307 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT615459 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT616861 RPLP1 ribosomal protein lateral stalk subunit P1 2 2
MIRT619415 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT619652 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT625325 TNFRSF13B TNF receptor superfamily member 13B 2 2
MIRT638980 ARFIP2 ADP ribosylation factor interacting protein 2 2 2
MIRT639458 ZNF429 zinc finger protein 429 2 2
MIRT640550 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT641473 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642720 ATXN3 ataxin 3 2 2
MIRT643048 SMN1 survival of motor neuron 1, telomeric 2 2
MIRT644921 SMN2 survival of motor neuron 2, centromeric 2 2
MIRT645875 ZNF275 zinc finger protein 275 2 2
MIRT649824 LIPG lipase G, endothelial type 2 2
MIRT649851 GYS2 glycogen synthase 2 2 2
MIRT649972 TRAFD1 TRAF-type zinc finger domain containing 1 2 2
MIRT650675 ZNF259 ZPR1 zinc finger 1 1
MIRT651319 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652876 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT652881 SYVN1 synoviolin 1 2 2
MIRT654144 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT657080 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657181 INO80C INO80 complex subunit C 2 2
MIRT657830 GJD3 gap junction protein delta 3 2 2
MIRT657897 GDF7 growth differentiation factor 7 2 2
MIRT659631 CDKN2AIP CDKN2A interacting protein 2 2
MIRT663115 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT664739 METTL16 methyltransferase like 16 2 2
MIRT667551 LRAT lecithin retinol acyltransferase 2 2
MIRT668552 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT682893 XIAP X-linked inhibitor of apoptosis 2 2
MIRT683092 PRRG4 proline rich and Gla domain 4 2 2
MIRT683102 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT697648 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT709158 ZNF419 zinc finger protein 419 2 2
MIRT713220 RCAN2 regulator of calcineurin 2 2 2
MIRT713277 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT715008 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT715051 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT715696 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT717250 TMEM246 transmembrane protein 246 2 2
MIRT717322 PGK1 phosphoglycerate kinase 1 2 2
MIRT717587 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 2 2
MIRT718122 CHST4 carbohydrate sulfotransferase 4 2 2
MIRT718418 CALN1 calneuron 1 2 2
MIRT718750 ZNF490 zinc finger protein 490 2 2
MIRT720048 PPP1R3F protein phosphatase 1 regulatory subunit 3F 2 2
MIRT721497 THRB thyroid hormone receptor beta 2 2
MIRT722531 EPRS glutamyl-prolyl-tRNA synthetase 2 2
MIRT723279 KRTAP21-2 keratin associated protein 21-2 2 2
MIRT724813 MSX2 msh homeobox 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6509-3p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6509-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6509-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6509-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6509-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

Error report submission