pre-miRNA Information
pre-miRNA hsa-mir-6509   
Genomic Coordinates chr7: 135206994 - 135207078
Description Homo sapiens miR-6509 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6509-3p
Sequence 52| UUCCACUGCCACUACCUAAUUU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs778601614 1 dbSNP
rs754554776 3 dbSNP
rs767798995 3 dbSNP
rs145322812 4 dbSNP
rs773941257 5 dbSNP
rs768273593 9 dbSNP
rs984565062 12 dbSNP
rs748872915 13 dbSNP
rs774861125 14 dbSNP
rs13241975 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TIMM10B   
Synonyms FXC1, TIM10B, Tim9b
Description translocase of inner mitochondrial membrane 10B
Transcript NM_012192   
Expression
Putative miRNA Targets on TIMM10B
3'UTR of TIMM10B
(miRNA target sites are highlighted)
>TIMM10B|NM_012192|3'UTR
   1 CCATACCCAACCCCAGGAAGGAAGGCCTTGGATGGACCCTCAGATTGAAGGACCCGGTGGACCTTGGGGTTGGTGAATCC
  81 TAAACAGAGAGAATTCGAGGTTGCCTGAAAGCTGGGTGTCCTTGCTCCTTTTCCTGGAGCCAATATACCCAGTTTTTACT
 161 CAGTTTGATTTATATTCTGGGCAAGGAAGCTTTGCCTACTTTATTGGCACAATCCGTTGTTCTGTCGTTTAGTGCATATC
 241 TGCTGGCTTCAGCCCTGGCAGCTGAGAAATTGTTTTCTATATGTAGAAGGAAAACCTGAGCATTTGCAGGCATCTGGTTA
 321 AAGCAGGGTCTGTGTGTACAATTTTAAAACGGGTAATATGTCATGCTCTTAGTTCATCTTCACAACAAAACTATGAGTAA
 401 GCGGTATTAGCCTCACTTAACAGATGAGGAAGCAAGATTCCAGAAAGTACCAGAAGGTCATTTTATACAACAGGAGATTG
 481 GTTCCTGCCCAGATGACAGAAAATGGGAGCTCTGTCTAGTTGTCCTTAAGTCTGACTGACTTCAGTGGCTCATAACCGTG
 561 AGCCAAGTATTTGTTGGTTCATAACTGTTGTTTTGTGAACTATGTCTTACATGTCTAGAGTTCTGCTGGATCTAGGGAAA
 641 GGAGGAGCTATCGAAGTACAACGGATCAAAAAACCACAGGGCTTTTGGGCACTGCCTCCTTGGGAAGTTAGTGGCCACAG
 721 AAGAGAGATGAAACCTGTAAGAAGTCTGGAGTCTTTTGGAACTTCAGCCATTTCCCCAGGTTGTTACTTTCTTAGTATGT
 801 ACAGTCTTCTCAGGATGAGCAGTAAAACCTTTGAACAAAGGTCTGTGTGGTTGTCTTCACGGGCAATCAGGAAGGGAGAG
 881 AGCTGGGGACCATATTCTGCAATGCAGCCAAATCCGAGGAAGAGAAACTGAAGGGAGAAGTAGATGGCAATGGTTATGAT
 961 AAAAAGGGATAAAACTAAATCTTCGGGACTTCTTTAATGCTACGTTAATGTTTCACTGCTCGTCTAGAAACTCCTAAATC
1041 CAGCTTTCTATCATCTGCCCCACATTGGTCCCATTGAGTACATTCTGTGATTTCTAATTCCAGCCTCTCCATTCTTTTCT
1121 CATTATTGCCTCCCCCGCCCCCCAACTTTGTGTAATTTACTTCTGTATTCAGCAGCCTGGATAGCATATCATTCCATCAC
1201 CCCATTTTCTTGCCACCATTGGCCATCTTTTTGTATCATTCCACTTATTCTGTCTTTTCCATTCCTTCATTCAAACTGCT
1281 AGAGAAAAACAGTTGTGTAATGAATGCCACTAAATATTCAAGGCCTCCAACCTCAGCCAAGTCCTCACACCAACACGCAG
1361 TCACACCAACACACACCTTTATGGGTTCCTGGTCCATTTCCTTCTCTAATTACCATGGCAGTTATTTTACACCTCTACTG
1441 CTGTCCTTAATCCCATACCCCACCCTCATCAGGTGACCCTGTTTCCTTTTTTAGAGAAATTGAAGCTCTTAGACATTGGT
1521 TTCCACAGTAATAATTTTAAAACTTCTTACAACTACCTACAAAGCAGATGTTCTATCCTATCTACAGAGCAGAAAATTGA
1601 AATTCTCAAGTAGCAGACCCGGTATTAAAGTGCAGATCTGACTTTAAAGTCCATGTTCATTTTACACAGCAGGCTGCCTC
1681 TTAAGATAGTATTTATTGAGCACACACTTTGTGTAGGTTCTGATTTTGGTAGATGTCATGCTTTATATTAATCTTTACAA
1761 CAACTATAAGTAAGAGGTATTAACCTCACTTAACAGATGAGGAAGCAAGAATCCAGAATGTGCCAGAAGGCACATTCTGC
1841 AGATTTCGTGCAAACATTTATACACAGCTTCTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGT
1921 GCAGTGGAGCGATCTAGGCTCACTGCAACCTCCGCCACCCGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCTCGAGTAGCT
2001 GGGATTACAGGCATGCGCCACCACGCCCAGCTAATTTTGTTTTTGTATTTTAAGTAGAGACGGGGTTTCACTGTATTGGT
2081 CAGGCTGGTCTTGAACTCCTGACCTTGTGATCCGCCCGCCTCGGCCTCCAAAAGTGCTGGGATTACAGGTGTGAGCCACC
2161 ACGGCCGGCCTATACAAAGTTTCTTATTGAGAAAAGTGGTTCCAATCATGTTTTTTGCCCCCTTTAGCTGCTATCTCTTG
2241 AACAGAAAAGTTTGTTAGGAAGGTAAAAGTTGCTGACTAGGACCTTACCCACAGGGTGGCACTCTGTCCTTGGGAAATAT
2321 AAATGCAAGTAAAACAGGTTTGAACTTCTTAACTTCCAGAAGATAGGAGGATGGGACCTGTGATACTGTGCTGCTGGTGG
2401 GAGGACCCTTCCACATCAACATTTGTGTGTATCCTTGCAATAAACTTCCATTGTGAATTAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuuaaUCC-AUCAC-CGUCACCUu 5'
               ||| |:| | |||||||| 
Target 5' cacccAGGCTGGAGTGCAGTGGAg 3'
1906 - 1929 157.00 -18.70
2
miRNA  3' uuuAAUCCA---UCAC---CGUCACCuu 5'
             ||| ||   | ||    ||||||  
Target 5' tccTTAAGTCTGACTGACTTCAGTGGct 3'
523 - 550 127.00 -11.30
3
miRNA  3' uuuAAUCCAUCACCGUCACCuu 5'
             ||:|| |||  :|||||  
Target 5' tccTTGGGAAGT--TAGTGGcc 3'
697 - 716 127.00 -12.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30180950 56 COSMIC
COSN30542703 101 COSMIC
COSN31501812 101 COSMIC
COSN31483968 108 COSMIC
COSN26440274 186 COSMIC
COSN32057877 228 COSMIC
COSN1136294 338 COSMIC
COSN26771036 498 COSMIC
COSN28949415 683 COSMIC
COSN16341797 964 COSMIC
COSN4723694 1137 COSMIC
COSN1136296 1194 COSMIC
COSN32064138 1639 COSMIC
COSN28201700 1654 COSMIC
COSN22196338 2008 COSMIC
COSN8687885 2405 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs774235484 1 dbSNP
rs745704040 2 dbSNP
rs771833344 4 dbSNP
rs552957893 6 dbSNP
rs574232381 7 dbSNP
rs1390635650 9 dbSNP
rs1414916637 10 dbSNP
rs1460338334 12 dbSNP
rs376860345 13 dbSNP
rs1395697046 16 dbSNP
rs1463184177 19 dbSNP
rs1329239718 24 dbSNP
rs116095394 26 dbSNP
rs762115070 27 dbSNP
rs1001483841 28 dbSNP
rs765334334 30 dbSNP
rs1352195645 36 dbSNP
rs1231403203 37 dbSNP
rs1202109194 42 dbSNP
rs1028100103 44 dbSNP
rs774191837 45 dbSNP
rs1335279178 46 dbSNP
rs1211240394 49 dbSNP
rs541740845 55 dbSNP
rs965204874 57 dbSNP
rs984464066 60 dbSNP
rs556813090 64 dbSNP
rs1259500240 65 dbSNP
rs575428459 66 dbSNP
rs1182288659 69 dbSNP
rs1322441762 73 dbSNP
rs1385111616 81 dbSNP
rs1475794024 84 dbSNP
rs1169700296 86 dbSNP
rs994531100 97 dbSNP
rs1394653158 98 dbSNP
rs1409603335 106 dbSNP
rs545667905 113 dbSNP
rs1278667945 119 dbSNP
rs1048121 125 dbSNP
rs1406562285 127 dbSNP
rs961210483 129 dbSNP
rs773000430 130 dbSNP
rs73400854 138 dbSNP
rs916556733 144 dbSNP
rs1381888778 151 dbSNP
rs1175840467 160 dbSNP
rs1471477571 164 dbSNP
rs969889600 168 dbSNP
rs540285423 172 dbSNP
rs1178764210 177 dbSNP
rs561685079 182 dbSNP
rs1260658425 190 dbSNP
rs190745852 203 dbSNP
rs953808121 207 dbSNP
rs548927460 208 dbSNP
rs925632426 209 dbSNP
rs570349858 213 dbSNP
rs1355829520 217 dbSNP
rs1309915628 221 dbSNP
rs754086371 223 dbSNP
rs913367882 225 dbSNP
rs73400857 228 dbSNP
rs1045911690 231 dbSNP
rs905943820 235 dbSNP
rs1002050326 237 dbSNP
rs1202110686 239 dbSNP
rs1157421608 240 dbSNP
rs1052720043 248 dbSNP
rs1049035497 252 dbSNP
rs1381252657 260 dbSNP
rs887789109 262 dbSNP
rs1443250675 265 dbSNP
rs1005436155 270 dbSNP
rs1240740035 271 dbSNP
rs73400858 280 dbSNP
rs1448048935 281 dbSNP
rs1483396374 282 dbSNP
rs961321766 297 dbSNP
rs998009142 299 dbSNP
rs1213154801 302 dbSNP
rs1371392974 309 dbSNP
rs752669277 315 dbSNP
rs1029528751 341 dbSNP
rs141524560 342 dbSNP
rs1357181120 353 dbSNP
rs1315023552 357 dbSNP
rs985631642 368 dbSNP
rs184241439 371 dbSNP
rs553021064 373 dbSNP
rs1040798977 374 dbSNP
rs901036322 376 dbSNP
rs993948358 384 dbSNP
rs568142296 388 dbSNP
rs1402034138 389 dbSNP
rs759003518 393 dbSNP
rs957269865 399 dbSNP
rs1361577294 403 dbSNP
rs1025541241 404 dbSNP
rs1370698048 412 dbSNP
rs1166356435 418 dbSNP
rs1423913386 424 dbSNP
rs1418117384 429 dbSNP
rs988533933 430 dbSNP
rs778357715 443 dbSNP
rs1382710550 444 dbSNP
rs950333033 447 dbSNP
rs1221462522 449 dbSNP
rs1489852042 450 dbSNP
rs1319791153 452 dbSNP
rs541574364 457 dbSNP
rs747390668 462 dbSNP
rs1429361882 467 dbSNP
rs927486132 469 dbSNP
rs1325213558 474 dbSNP
rs1222107502 484 dbSNP
rs1293438249 492 dbSNP
rs937414600 510 dbSNP
rs969377394 517 dbSNP
rs1283118087 519 dbSNP
rs535439357 521 dbSNP
rs187683891 535 dbSNP
rs1294663963 536 dbSNP
rs757678812 542 dbSNP
rs1461864135 546 dbSNP
rs1005287628 553 dbSNP
rs573062300 557 dbSNP
rs1446532751 558 dbSNP
rs957120072 559 dbSNP
rs1271384862 561 dbSNP
rs1478639253 567 dbSNP
rs1479562716 572 dbSNP
rs1174087131 577 dbSNP
rs1198478407 578 dbSNP
rs1036395801 581 dbSNP
rs897060032 583 dbSNP
rs1191706806 586 dbSNP
rs915385301 586 dbSNP
rs115297972 588 dbSNP
rs986344226 588 dbSNP
rs546034469 601 dbSNP
rs1029476547 603 dbSNP
rs942373945 604 dbSNP
rs9802 611 dbSNP
rs900903783 616 dbSNP
rs572961748 618 dbSNP
rs147028452 630 dbSNP
rs561745671 633 dbSNP
rs1033177940 640 dbSNP
rs1371804129 642 dbSNP
rs1328731616 646 dbSNP
rs1466708305 651 dbSNP
rs1046893042 654 dbSNP
rs1418613665 655 dbSNP
rs1175308161 657 dbSNP
rs1303194289 664 dbSNP
rs1379170751 667 dbSNP
rs748936590 670 dbSNP
rs1418502568 679 dbSNP
rs573715471 681 dbSNP
rs1180380252 683 dbSNP
rs1019933400 689 dbSNP
rs1458296137 710 dbSNP
rs1005427248 722 dbSNP
rs1202022145 738 dbSNP
rs773141606 740 dbSNP
rs1257020503 745 dbSNP
rs10136 746 dbSNP
rs138155972 747 dbSNP
rs531119822 749 dbSNP
rs1241574068 750 dbSNP
rs1448121356 752 dbSNP
rs1335424912 754 dbSNP
rs1377005053 754 dbSNP
rs149100526 758 dbSNP
rs1259507787 763 dbSNP
rs1003530884 765 dbSNP
rs1035536100 766 dbSNP
rs956829616 768 dbSNP
rs927433742 769 dbSNP
rs1160387848 770 dbSNP
rs937511313 791 dbSNP
rs1294040524 801 dbSNP
rs985017822 802 dbSNP
rs909278590 804 dbSNP
rs1489938769 805 dbSNP
rs1440172636 806 dbSNP
rs1384747330 808 dbSNP
rs1198987832 813 dbSNP
rs1251458277 823 dbSNP
rs1444381051 830 dbSNP
rs564546516 837 dbSNP
rs940812930 841 dbSNP
rs1257092486 842 dbSNP
rs1204719682 843 dbSNP
rs1485117817 846 dbSNP
rs1288521535 856 dbSNP
rs1241527565 867 dbSNP
rs1419474376 872 dbSNP
rs1036343614 875 dbSNP
rs528660300 883 dbSNP
rs760596702 889 dbSNP
rs1362028081 897 dbSNP
rs1022475609 899 dbSNP
rs1334436632 915 dbSNP
rs747547574 916 dbSNP
rs901861771 917 dbSNP
rs1163728848 919 dbSNP
rs986417628 925 dbSNP
rs933865797 928 dbSNP
rs1051016218 930 dbSNP
rs1192757025 935 dbSNP
rs1398004631 936 dbSNP
rs1476932934 937 dbSNP
rs1265871569 938 dbSNP
rs889587784 944 dbSNP
rs1396710375 950 dbSNP
rs1288324597 952 dbSNP
rs976464517 953 dbSNP
rs1186772015 954 dbSNP
rs1007128835 955 dbSNP
rs1284215225 956 dbSNP
rs769819602 961 dbSNP
rs929734962 962 dbSNP
rs775615114 967 dbSNP
rs1337953450 972 dbSNP
rs1046758412 973 dbSNP
rs1400355711 977 dbSNP
rs772015130 980 dbSNP
rs1321536082 985 dbSNP
rs546721222 985 dbSNP
rs143185469 986 dbSNP
rs73400862 994 dbSNP
rs1167399165 996 dbSNP
rs1045413602 998 dbSNP
rs74055813 1000 dbSNP
rs971047705 1001 dbSNP
rs981622363 1004 dbSNP
rs1034564850 1005 dbSNP
rs1480326979 1007 dbSNP
rs569192361 1008 dbSNP
rs759824554 1016 dbSNP
rs959018614 1019 dbSNP
rs1197403359 1022 dbSNP
rs985348604 1023 dbSNP
rs1452677625 1026 dbSNP
rs1056477335 1028 dbSNP
rs1197420616 1034 dbSNP
rs765334633 1041 dbSNP
rs892434374 1050 dbSNP
rs752827023 1051 dbSNP
rs1259612863 1053 dbSNP
rs542120983 1058 dbSNP
rs71470012 1067 dbSNP
rs1063250 1074 dbSNP
rs376023231 1075 dbSNP
rs1022382763 1082 dbSNP
rs1438601048 1083 dbSNP
rs113348225 1085 dbSNP
rs1444630290 1095 dbSNP
rs1402489754 1101 dbSNP
rs1171696061 1112 dbSNP
rs1007708282 1115 dbSNP
rs1423579301 1116 dbSNP
rs923232555 1122 dbSNP
rs750188738 1129 dbSNP
rs1478665326 1137 dbSNP
rs73400864 1137 dbSNP
rs1050456648 1138 dbSNP
rs148245744 1143 dbSNP
rs1456089651 1146 dbSNP
rs1442263828 1149 dbSNP
rs1198901173 1155 dbSNP
rs1183469642 1162 dbSNP
rs1311241066 1172 dbSNP
rs1276329634 1184 dbSNP
rs182783309 1187 dbSNP
rs116189027 1189 dbSNP
rs1308476148 1190 dbSNP
rs1444430329 1201 dbSNP
rs1379226355 1210 dbSNP
rs892982383 1215 dbSNP
rs544282619 1217 dbSNP
rs1452272664 1219 dbSNP
rs1296870467 1223 dbSNP
rs1336609352 1225 dbSNP
rs187025076 1229 dbSNP
rs1407660260 1232 dbSNP
rs1453756829 1236 dbSNP
rs1442030080 1237 dbSNP
rs1381693824 1239 dbSNP
rs1339290826 1240 dbSNP
rs1482749138 1248 dbSNP
rs951048171 1249 dbSNP
rs1211742343 1250 dbSNP
rs982529963 1255 dbSNP
rs909620753 1266 dbSNP
rs577537451 1267 dbSNP
rs1355761988 1269 dbSNP
rs1296377321 1274 dbSNP
rs1310125131 1280 dbSNP
rs1227787234 1282 dbSNP
rs906998553 1287 dbSNP
rs1044921542 1296 dbSNP
rs1225533775 1305 dbSNP
rs1448941106 1328 dbSNP
rs546207708 1331 dbSNP
rs1002483645 1335 dbSNP
rs939286963 1341 dbSNP
rs1457178420 1342 dbSNP
rs1034049849 1344 dbSNP
rs1361701617 1347 dbSNP
rs1158780651 1349 dbSNP
rs1422750732 1351 dbSNP
rs192827822 1352 dbSNP
rs959195585 1353 dbSNP
rs1183243205 1356 dbSNP
rs528698858 1357 dbSNP
rs1009560223 1358 dbSNP
rs1489257870 1359 dbSNP
rs547171745 1364 dbSNP
rs1220684601 1367 dbSNP
rs1320000187 1372 dbSNP
rs903958258 1390 dbSNP
rs574911478 1401 dbSNP
rs182939631 1405 dbSNP
rs1008028602 1416 dbSNP
rs1341467397 1421 dbSNP
rs962213158 1433 dbSNP
rs141789745 1435 dbSNP
rs923348461 1436 dbSNP
rs1347625978 1441 dbSNP
rs1166285736 1443 dbSNP
rs754666200 1444 dbSNP
rs954805152 1455 dbSNP
rs1167888778 1462 dbSNP
rs1190992316 1464 dbSNP
rs1422426958 1465 dbSNP
rs986112044 1468 dbSNP
rs1263546948 1469 dbSNP
rs1026516269 1474 dbSNP
rs1178989437 1475 dbSNP
rs753713195 1479 dbSNP
rs910570998 1481 dbSNP
rs1222364313 1489 dbSNP
rs942583344 1502 dbSNP
rs982392742 1507 dbSNP
rs909526248 1515 dbSNP
rs1054385252 1516 dbSNP
rs1345430615 1518 dbSNP
rs188045861 1520 dbSNP
rs550628495 1528 dbSNP
rs914349699 1538 dbSNP
rs1300950671 1541 dbSNP
rs1385651363 1551 dbSNP
rs1289903352 1558 dbSNP
rs1370321547 1567 dbSNP
rs1294824233 1569 dbSNP
rs926518305 1570 dbSNP
rs1398868038 1574 dbSNP
rs146208775 1576 dbSNP
rs1056415870 1586 dbSNP
rs1373486496 1587 dbSNP
rs1175090859 1591 dbSNP
rs1041564703 1596 dbSNP
rs945252954 1599 dbSNP
rs1191657519 1601 dbSNP
rs778375351 1611 dbSNP
rs137950628 1613 dbSNP
rs543792074 1614 dbSNP
rs1002604500 1621 dbSNP
rs1055847759 1622 dbSNP
rs1277829152 1627 dbSNP
rs771567428 1629 dbSNP
rs1231494907 1639 dbSNP
rs551421046 1646 dbSNP
rs943467853 1649 dbSNP
rs564056603 1651 dbSNP
rs1006851045 1652 dbSNP
rs998077572 1654 dbSNP
rs1016520738 1661 dbSNP
rs1264767079 1666 dbSNP
rs777727834 1668 dbSNP
rs1310432252 1674 dbSNP
rs1209354846 1679 dbSNP
rs1379115964 1687 dbSNP
rs1174192131 1692 dbSNP
rs1006399067 1693 dbSNP
rs746929591 1697 dbSNP
rs879549488 1704 dbSNP
rs1184231625 1705 dbSNP
rs1180584093 1708 dbSNP
rs1438655094 1714 dbSNP
rs1016561090 1716 dbSNP
rs1030527610 1717 dbSNP
rs962690450 1719 dbSNP
rs954753253 1736 dbSNP
rs986244007 1739 dbSNP
rs1256893613 1740 dbSNP
rs980582309 1742 dbSNP
rs1352139677 1746 dbSNP
rs372299157 1747 dbSNP
rs1202116769 1753 dbSNP
rs1427654403 1754 dbSNP
rs958065981 1754 dbSNP
rs1335788170 1757 dbSNP
rs1311615692 1764 dbSNP
rs1033834623 1765 dbSNP
rs1404103413 1767 dbSNP
rs1414195496 1767 dbSNP
rs1313250890 1769 dbSNP
rs1160511509 1770 dbSNP
rs960595475 1771 dbSNP
rs566751875 1772 dbSNP
rs989925245 1774 dbSNP
rs914480009 1776 dbSNP
rs1451783031 1778 dbSNP
rs945992708 1789 dbSNP
rs1367897883 1790 dbSNP
rs1185700844 1799 dbSNP
rs1425764725 1804 dbSNP
rs1041516378 1812 dbSNP
rs928492072 1813 dbSNP
rs938407153 1814 dbSNP
rs192225194 1817 dbSNP
rs11040898 1821 dbSNP
rs34052361 1827 dbSNP
rs560296142 1830 dbSNP
rs541554841 1832 dbSNP
rs1242229989 1833 dbSNP
rs1037806954 1838 dbSNP
rs898061363 1840 dbSNP
rs1293724526 1841 dbSNP
rs979305276 1847 dbSNP
rs925311210 1848 dbSNP
rs1218390727 1849 dbSNP
rs993767424 1852 dbSNP
rs529068391 1855 dbSNP
rs775560718 1857 dbSNP
rs375452183 1871 dbSNP
rs1193160273 1872 dbSNP
rs1265716096 1872 dbSNP
rs1451524522 1872 dbSNP
rs570275947 1872 dbSNP
rs1008015439 1875 dbSNP
rs537961615 1876 dbSNP
rs1336231728 1882 dbSNP
rs1273459374 1883 dbSNP
rs879828500 1887 dbSNP
rs1490353307 1888 dbSNP
rs1201138148 1889 dbSNP
rs933395857 1891 dbSNP
rs1330415495 1893 dbSNP
rs556201921 1899 dbSNP
rs1477917956 1900 dbSNP
rs1178119359 1902 dbSNP
rs958394682 1904 dbSNP
rs1047897294 1907 dbSNP
rs886574559 1909 dbSNP
rs1170247535 1910 dbSNP
rs1006469244 1920 dbSNP
rs1016464285 1923 dbSNP
rs989481089 1930 dbSNP
rs112798999 1931 dbSNP
rs967246210 1954 dbSNP
rs977322914 1955 dbSNP
rs1469422077 1956 dbSNP
rs1197687052 1958 dbSNP
rs549311429 1959 dbSNP
rs1456165747 1960 dbSNP
rs928438416 1961 dbSNP
rs763189199 1962 dbSNP
rs1349470401 1964 dbSNP
rs1002259766 1971 dbSNP
rs1225309062 1973 dbSNP
rs1435565743 1977 dbSNP
rs1279913957 1978 dbSNP
rs1033330276 1981 dbSNP
rs1375513833 1989 dbSNP
rs960753520 1993 dbSNP
rs201233062 1994 dbSNP
rs991876533 2001 dbSNP
rs189336483 2009 dbSNP
rs1174839880 2014 dbSNP
rs1287360311 2015 dbSNP
rs1020804075 2017 dbSNP
rs991771606 2018 dbSNP
rs59421287 2019 dbSNP
rs561962225 2023 dbSNP
rs529421241 2025 dbSNP
rs1178576781 2026 dbSNP
rs1308671925 2027 dbSNP
rs1238029757 2032 dbSNP
rs966530390 2036 dbSNP
rs1386364562 2057 dbSNP
rs1280361389 2060 dbSNP
rs1446549065 2062 dbSNP
rs762429524 2063 dbSNP
rs1413423407 2066 dbSNP
rs1140221 2074 dbSNP
rs1331067077 2076 dbSNP
rs1360420809 2086 dbSNP
rs964762460 2097 dbSNP
rs1444255146 2105 dbSNP
rs1417358003 2109 dbSNP
rs975167236 2112 dbSNP
rs923267686 2114 dbSNP
rs929510457 2118 dbSNP
rs1235591328 2119 dbSNP
rs933414122 2121 dbSNP
rs1052019120 2123 dbSNP
rs562985432 2124 dbSNP
rs942191209 2129 dbSNP
rs750815546 2130 dbSNP
rs890749002 2132 dbSNP
rs533211334 2133 dbSNP
rs906126858 2135 dbSNP
rs1214799812 2143 dbSNP
rs1007716504 2154 dbSNP
rs1018216262 2163 dbSNP
rs1228031341 2164 dbSNP
rs1377206143 2167 dbSNP
rs139464704 2168 dbSNP
rs1415802984 2170 dbSNP
rs1198358567 2184 dbSNP
rs1055209220 2195 dbSNP
rs1296895348 2196 dbSNP
rs896116134 2206 dbSNP
rs1013382572 2209 dbSNP
rs1011429237 2212 dbSNP
rs1404438880 2218 dbSNP
rs1185601555 2219 dbSNP
rs778698450 2220 dbSNP
rs1020885323 2221 dbSNP
rs1475432234 2223 dbSNP
rs752316708 2224 dbSNP
rs977272225 2225 dbSNP
rs1191490190 2238 dbSNP
rs1486804217 2244 dbSNP
rs1242818298 2260 dbSNP
rs1236984594 2263 dbSNP
rs1475750887 2280 dbSNP
rs1319948380 2284 dbSNP
rs1020707363 2295 dbSNP
rs1035569774 2298 dbSNP
rs960265219 2299 dbSNP
rs1169894713 2306 dbSNP
rs150061600 2307 dbSNP
rs1276687829 2312 dbSNP
rs1384494103 2313 dbSNP
rs966561815 2325 dbSNP
rs527599549 2329 dbSNP
rs370812940 2335 dbSNP
rs941760523 2337 dbSNP
rs1000681000 2338 dbSNP
rs1406812452 2341 dbSNP
rs1327514520 2343 dbSNP
rs1461625737 2345 dbSNP
rs1454507715 2349 dbSNP
rs1422740345 2353 dbSNP
rs144413908 2354 dbSNP
rs974653228 2356 dbSNP
rs757952272 2368 dbSNP
rs1487547833 2372 dbSNP
rs1339378766 2375 dbSNP
rs1430757926 2382 dbSNP
rs1457484127 2389 dbSNP
rs918885002 2403 dbSNP
rs923266484 2408 dbSNP
rs1308399855 2415 dbSNP
rs1271597356 2416 dbSNP
rs1301225844 2418 dbSNP
rs1217912067 2427 dbSNP
rs1315645372 2428 dbSNP
rs954703666 2435 dbSNP
rs1264142811 2441 dbSNP
rs140907430 2445 dbSNP
rs983529422 2446 dbSNP
rs1051460002 2455 dbSNP
rs538022711 2456 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067869. RNA binding protein: AGO2. Condition:Ago2 IP-seq (asynchronous cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuuaaUCC-AUCAC-CGUCACCUu 5'
               ||| |:| | |||||||| 
Target 5' ---ccAGGCUGGAGUGCAGUGGA- 3'
1 - 20
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
CLIP-seq Support 1 for dataset GSM1067869
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (asynchronous cells)
Location of target site ENST00000254616.6 | 3UTR | CCAGGCUGGAGUGCAGUGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-6509-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055374 PDCD4 programmed cell death 4 2 4
MIRT378341 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT444668 CDKL2 cyclin dependent kinase like 2 2 2
MIRT446953 CD248 CD248 molecule 2 2
MIRT460332 CAMK4 calcium/calmodulin dependent protein kinase IV 2 6
MIRT464078 VPS4A vacuolar protein sorting 4 homolog A 2 2
MIRT464586 UBN2 ubinuclein 2 2 2
MIRT468482 SESN3 sestrin 3 2 2
MIRT468962 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT475455 HSPA8 heat shock protein family A (Hsp70) member 8 2 2
MIRT482403 ADRB1 adrenoceptor beta 1 2 10
MIRT486992 ZFAND2B zinc finger AN1-type containing 2B 2 2
MIRT489397 TUBB2A tubulin beta 2A class IIa 2 2
MIRT526319 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526560 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526732 ZNF138 zinc finger protein 138 2 8
MIRT531581 STXBP5L syntaxin binding protein 5 like 2 2
MIRT532011 NOX5 NADPH oxidase 5 2 2
MIRT533407 TXLNG taxilin gamma 2 2
MIRT533436 TRPC5 transient receptor potential cation channel subfamily C member 5 2 2
MIRT533866 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT539254 ANKRD50 ankyrin repeat domain 50 2 2
MIRT541451 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT566794 MIER3 MIER family member 3 2 2
MIRT569294 SURF6 surfeit 6 2 2
MIRT571336 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT572802 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT572813 MYO1C myosin IC 2 2
MIRT574219 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT607259 GRAMD1B GRAM domain containing 1B 2 4
MIRT609307 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT615459 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT616861 RPLP1 ribosomal protein lateral stalk subunit P1 2 2
MIRT619415 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT619652 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT625325 TNFRSF13B TNF receptor superfamily member 13B 2 2
MIRT638980 ARFIP2 ADP ribosylation factor interacting protein 2 2 2
MIRT639458 ZNF429 zinc finger protein 429 2 2
MIRT640550 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT641473 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642720 ATXN3 ataxin 3 2 2
MIRT643048 SMN1 survival of motor neuron 1, telomeric 2 2
MIRT644921 SMN2 survival of motor neuron 2, centromeric 2 2
MIRT645875 ZNF275 zinc finger protein 275 2 2
MIRT649824 LIPG lipase G, endothelial type 2 2
MIRT649851 GYS2 glycogen synthase 2 2 2
MIRT649972 TRAFD1 TRAF-type zinc finger domain containing 1 2 2
MIRT650675 ZNF259 ZPR1 zinc finger 1 1
MIRT651319 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652876 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT652881 SYVN1 synoviolin 1 2 2
MIRT654144 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT657080 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657181 INO80C INO80 complex subunit C 2 2
MIRT657830 GJD3 gap junction protein delta 3 2 2
MIRT657897 GDF7 growth differentiation factor 7 2 2
MIRT659631 CDKN2AIP CDKN2A interacting protein 2 2
MIRT663115 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT664739 METTL16 methyltransferase like 16 2 2
MIRT667551 LRAT lecithin retinol acyltransferase 2 2
MIRT668552 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT682893 XIAP X-linked inhibitor of apoptosis 2 2
MIRT683092 PRRG4 proline rich and Gla domain 4 2 2
MIRT683102 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT697648 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT709158 ZNF419 zinc finger protein 419 2 2
MIRT713220 RCAN2 regulator of calcineurin 2 2 2
MIRT713277 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT715008 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT715051 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT715696 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT717250 TMEM246 transmembrane protein 246 2 2
MIRT717322 PGK1 phosphoglycerate kinase 1 2 2
MIRT717587 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 2 2
MIRT718122 CHST4 carbohydrate sulfotransferase 4 2 2
MIRT718418 CALN1 calneuron 1 2 2
MIRT718750 ZNF490 zinc finger protein 490 2 2
MIRT720048 PPP1R3F protein phosphatase 1 regulatory subunit 3F 2 2
MIRT721497 THRB thyroid hormone receptor beta 2 2
MIRT722531 EPRS glutamyl-prolyl-tRNA synthetase 2 2
MIRT723279 KRTAP21-2 keratin associated protein 21-2 2 2
MIRT724813 MSX2 msh homeobox 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6509-3p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6509-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6509-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6509-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6509-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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