pre-miRNA Information
pre-miRNA hsa-mir-4433a   
Genomic Coordinates chr2: 64340759 - 64340839
Description Homo sapiens miR-4433a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4433a-3p
Sequence 51| ACAGGAGUGGGGGUGGGACAU |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751480515 9 dbSNP
rs557760377 15 dbSNP
rs1479580865 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF329   
Synonyms -
Description zinc finger protein 329
Transcript NM_024620   
Expression
Putative miRNA Targets on ZNF329
3'UTR of ZNF329
(miRNA target sites are highlighted)
>ZNF329|NM_024620|3'UTR
   1 TGGTTGGGGGCCACATGAGTCTTCCAGTTCACTCTCACTCCTGTGTTTAGGAGGCGTGTCTTAGATCTGACTCCTCTCTG
  81 GTCAGTAGAAAAGAATCCTTTAAGCTATCCAGTGAATTGATGAATGTGAGACATTGCTGAGCCACACTGTTAAGTCTGCT
 161 CATTGGGGAACTCCAGAGACAACTTAGGATGAGGGCAGAAAAGTCTTTGGGGATGATTCAGTCTGTACCAGACATGACAA
 241 CACACACACTGGAATGAAATGTGCAAACATGGGGGTGACACCACAGAGAGAACCTGTGAATGCATTCAGAACATGATTGG
 321 AATGAAGAGCCCTGTAGTAGGGAGTTTCCACCTTGTACGTAAGCAAACACTGAATCAACTTTTTTTTTTTTTTCGGACAG
 401 AGTCTCACTGTGCAGTGGCATGATCTCCACTCACAGCAACCTCTGCCTCCCAGGTTCAAGCAGTTCTCCTGCCTCAGCCT
 481 CCAAAGTAGCTAGGATTACAGGTGCCTGCCACCATGCCTGGCTAATTTTTTCTATTTTTAGTAGAGACAGGGTTTCACTG
 561 TGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATGATCCGCCCACCTCAGCCTCCCAAAGTGTTGGGATTACAGGCATG
 641 AGACACTGCCTGGCCTGAATCAACCTTTTTTAAGTGTAATCAGAAAGAGAGGCTTTGGCAGGGGCTCTTACTGTGTTTTC
 721 TGTAACAACAAAGGTGTACAATGAGAGAGTCCACACAGTGCTGTACTGCACACACCACAGAATGTGTGAGATTTTCCTGT
 801 TTGAATGTATGTCTGCATTATACTCCTGCAATAATGCTGAGGACTCGTTGCAGGAGGGCAAACTAGGTGAATAAATTACC
 881 TGTGAATGAACAATGAAGTCGTTCCTCTTAAGACTGAAACAAGCAGGCCAGATGTGGTGGCTCACGCCTGTAATCCTAGC
 961 ACTTTGGGAGGCCGAGGCGGCCAGATCACAAGGTTAGGAGTTCAAGACCAGCCTGGCCAGCATGGTGAAACCCCATCTCT
1041 ACCAAAAATACAGGAAATTATCTGGGCATAGTAGTGTGTGCCTGTAATCCCAGCTACTTGGGAAGCTGAGGCAGGAGAAT
1121 TGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCTAAGATCGCACCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTC
1201 CATTTCAAAAAAAAAGACTGAAACAAGCTTGTGCTAAGATGGAAAGGGCTGCTTCTAACAGATGTGGTTTGTTGCTTTAG
1281 TTGTTGAAGCAAAAATACTGAGTTGTTATGTTTATGTTATCACCCCACCACTACCTCCATGGTTGTTCATTTAGGATGCT
1361 TCTAATTCAGCCACTGTGAACCATTATAAAGGTTTTATTGCCATGTTGAAAATGTTTATAATATGGCAAAAAGGGGCATC
1441 AAATAGAAGATTTACTATTATTCCAGCCATGTAAAAATATGTGCACATATGGATGTATGTTGAAAGTGGATGATGGAGAA
1521 ATAAAATGTGGTTTTCTTTGGGGACTGGAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaCAGGGUGGGGGUGAGGACa 5'
            || :|||:|:|||||||| 
Target 5' caGT-TCACTCTCACTCCTGt 3'
25 - 44 170.00 -27.70
2
miRNA  3' uaCAGG-GUGGGGGUGAGGACa 5'
            |||: || :: :||||||| 
Target 5' atGTCTGCA-TTATACTCCTGc 3'
809 - 829 150.00 -19.80
3
miRNA  3' uaCAGGGUGGGG-GUGAGGACa 5'
            | |: ::|::  ||||||| 
Target 5' caGGCTGGTCTTGAACTCCTGa 3'
568 - 589 143.00 -15.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31956692 12 COSMIC
COSN29463470 54 COSMIC
COSN27006015 55 COSMIC
COSN30506644 56 COSMIC
COSN1219429 60 COSMIC
COSN31506675 69 COSMIC
COSN31499897 76 COSMIC
COSN30155613 88 COSMIC
COSN31570088 93 COSMIC
COSN30102654 97 COSMIC
COSN30149312 114 COSMIC
COSN31505101 126 COSMIC
COSN31481749 128 COSMIC
COSN30131326 154 COSMIC
COSN30120965 178 COSMIC
COSN22992198 193 COSMIC
COSN30132960 207 COSMIC
COSN31611772 228 COSMIC
COSN17182846 256 COSMIC
COSN31580081 270 COSMIC
COSN31517528 290 COSMIC
COSN31540154 308 COSMIC
COSN26644407 358 COSMIC
COSN26670128 365 COSMIC
COSN17323995 525 COSMIC
COSN24960053 541 COSMIC
COSN15449669 775 COSMIC
COSN8977167 1011 COSMIC
COSN21294051 1436 COSMIC
COSN29466419 1471 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs768658962 11 dbSNP
rs371441491 13 dbSNP
rs1403782327 14 dbSNP
rs1301235416 16 dbSNP
rs748794969 17 dbSNP
rs781336273 18 dbSNP
rs757226062 21 dbSNP
rs1172342570 23 dbSNP
rs1294527925 24 dbSNP
rs779924139 26 dbSNP
rs376933879 28 dbSNP
rs1416888056 29 dbSNP
rs865970097 30 dbSNP
rs1179958610 31 dbSNP
rs139609947 33 dbSNP
rs370446392 34 dbSNP
rs758812297 37 dbSNP
rs376403611 40 dbSNP
rs765549027 41 dbSNP
rs1486451392 42 dbSNP
rs1256293222 43 dbSNP
rs1452258272 49 dbSNP
rs919818438 54 dbSNP
rs1260129958 56 dbSNP
rs1446815944 66 dbSNP
rs1165142888 69 dbSNP
rs1385413625 73 dbSNP
rs560556669 74 dbSNP
rs150746474 76 dbSNP
rs1346921123 88 dbSNP
rs1158129747 96 dbSNP
rs1288185426 103 dbSNP
rs1359689401 111 dbSNP
rs114563414 114 dbSNP
rs1315998151 128 dbSNP
rs879667515 136 dbSNP
rs986520500 143 dbSNP
rs1243899723 152 dbSNP
rs886642128 153 dbSNP
rs1317557343 166 dbSNP
rs1215781939 167 dbSNP
rs1259471301 182 dbSNP
rs1047498765 183 dbSNP
rs949137769 196 dbSNP
rs1243412946 200 dbSNP
rs955116027 203 dbSNP
rs561256509 205 dbSNP
rs1409577265 212 dbSNP
rs1400779694 220 dbSNP
rs1158372577 224 dbSNP
rs1386293539 229 dbSNP
rs34713055 232 dbSNP
rs1054808797 240 dbSNP
rs975531814 257 dbSNP
rs937908602 261 dbSNP
rs544192767 265 dbSNP
rs1422915432 269 dbSNP
rs1446137560 272 dbSNP
rs575598600 275 dbSNP
rs1253428935 276 dbSNP
rs1281482228 292 dbSNP
rs565360533 293 dbSNP
rs966933617 300 dbSNP
rs913762321 305 dbSNP
rs772920347 313 dbSNP
rs988833674 314 dbSNP
rs954807691 317 dbSNP
rs545208933 323 dbSNP
rs1030257166 325 dbSNP
rs957018630 327 dbSNP
rs1204740209 343 dbSNP
rs1262968312 348 dbSNP
rs978172942 350 dbSNP
rs757987740 356 dbSNP
rs996138363 358 dbSNP
rs964778588 359 dbSNP
rs1470212588 360 dbSNP
rs1176083690 364 dbSNP
rs1409691458 374 dbSNP
rs80095486 379 dbSNP
rs1045192509 380 dbSNP
rs76993997 380 dbSNP
rs1016918754 381 dbSNP
rs1006500700 385 dbSNP
rs1038250795 393 dbSNP
rs1347449296 394 dbSNP
rs74269140 394 dbSNP
rs775699293 394 dbSNP
rs879878647 394 dbSNP
rs1224711037 395 dbSNP
rs573305625 396 dbSNP
rs1321928267 398 dbSNP
rs1216636484 403 dbSNP
rs1050703508 406 dbSNP
rs1267630546 410 dbSNP
rs886587285 413 dbSNP
rs1249036632 418 dbSNP
rs1026502040 420 dbSNP
rs553977344 422 dbSNP
rs1013312498 434 dbSNP
rs1476919508 435 dbSNP
rs1169393927 439 dbSNP
rs769270683 440 dbSNP
rs1437441607 449 dbSNP
rs1367601473 452 dbSNP
rs533977588 454 dbSNP
rs1365829952 459 dbSNP
rs1054755618 460 dbSNP
rs1303096115 462 dbSNP
rs968149834 463 dbSNP
rs1433352458 466 dbSNP
rs915394944 471 dbSNP
rs1339105477 484 dbSNP
rs1227298169 488 dbSNP
rs747820102 489 dbSNP
rs1360986187 492 dbSNP
rs1222494909 494 dbSNP
rs1268129378 498 dbSNP
rs1449750433 504 dbSNP
rs1195214346 505 dbSNP
rs1242534531 508 dbSNP
rs1474960032 509 dbSNP
rs1186972989 513 dbSNP
rs1387252624 522 dbSNP
rs574742192 523 dbSNP
rs1163669273 524 dbSNP
rs1162967339 525 dbSNP
rs1388638837 527 dbSNP
rs1457078890 532 dbSNP
rs1319551316 534 dbSNP
rs957167022 540 dbSNP
rs1035302724 541 dbSNP
rs1384488281 543 dbSNP
rs1246107745 549 dbSNP
rs1264405513 551 dbSNP
rs1353611563 557 dbSNP
rs2547258 560 dbSNP
rs537843766 562 dbSNP
rs1044018997 563 dbSNP
rs1284853371 569 dbSNP
rs1464284759 573 dbSNP
rs1169938141 579 dbSNP
rs1449470952 586 dbSNP
rs945332493 590 dbSNP
rs1245236575 596 dbSNP
rs568787908 600 dbSNP
rs969391669 601 dbSNP
rs913710203 603 dbSNP
rs1445807772 604 dbSNP
rs1471192404 612 dbSNP
rs766840527 618 dbSNP
rs899287435 621 dbSNP
rs1210860861 628 dbSNP
rs1456001539 632 dbSNP
rs1017170149 634 dbSNP
rs1488271286 636 dbSNP
rs1407274018 655 dbSNP
rs556528847 663 dbSNP
rs887005980 671 dbSNP
rs1338253261 675 dbSNP
rs1230885165 678 dbSNP
rs1240492181 679 dbSNP
rs1050983012 692 dbSNP
rs1296989800 703 dbSNP
rs1328341270 711 dbSNP
rs1206616899 722 dbSNP
rs778521756 735 dbSNP
rs1225119562 741 dbSNP
rs538327301 743 dbSNP
rs1200151130 750 dbSNP
rs1254270811 750 dbSNP
rs923357341 755 dbSNP
rs746987993 756 dbSNP
rs974887039 757 dbSNP
rs1323958706 763 dbSNP
rs1363748865 767 dbSNP
rs899512641 769 dbSNP
rs1386075421 773 dbSNP
rs1469604430 776 dbSNP
rs1301911232 786 dbSNP
rs1399530407 789 dbSNP
rs775064992 789 dbSNP
rs1039385906 798 dbSNP
rs1328892108 800 dbSNP
rs566233056 805 dbSNP
rs546751472 807 dbSNP
rs1016287933 817 dbSNP
rs375430670 823 dbSNP
rs1324014516 825 dbSNP
rs530273117 827 dbSNP
rs1232169225 829 dbSNP
rs1254512646 832 dbSNP
rs1341673529 835 dbSNP
rs1309408419 838 dbSNP
rs985422170 842 dbSNP
rs2547360 846 dbSNP
rs1026451422 847 dbSNP
rs1202303313 859 dbSNP
rs753040455 861 dbSNP
rs935533438 866 dbSNP
rs550892307 871 dbSNP
rs530920501 874 dbSNP
rs1013763990 886 dbSNP
rs928178352 890 dbSNP
rs76186315 895 dbSNP
rs1369462232 897 dbSNP
rs1474699710 898 dbSNP
rs545404844 900 dbSNP
rs186827385 901 dbSNP
rs1346021114 911 dbSNP
rs1386026803 916 dbSNP
rs903492882 917 dbSNP
rs559893484 932 dbSNP
rs945250903 933 dbSNP
rs963778742 937 dbSNP
rs1340158987 941 dbSNP
rs1224726619 943 dbSNP
rs148251397 946 dbSNP
rs1207496299 947 dbSNP
rs1488413554 952 dbSNP
rs1189962772 955 dbSNP
rs144112905 956 dbSNP
rs1429467117 957 dbSNP
rs1273987254 962 dbSNP
rs1051000164 973 dbSNP
rs933815465 974 dbSNP
rs921127711 978 dbSNP
rs554880741 979 dbSNP
rs1365632706 981 dbSNP
rs886956818 984 dbSNP
rs1029498768 991 dbSNP
rs975216299 996 dbSNP
rs998057542 1006 dbSNP
rs1297147426 1012 dbSNP
rs182453052 1018 dbSNP
rs750414919 1021 dbSNP
rs1315885506 1025 dbSNP
rs946428291 1028 dbSNP
rs1220077942 1030 dbSNP
rs1343358086 1032 dbSNP
rs984817981 1035 dbSNP
rs142692039 1036 dbSNP
rs1208449827 1042 dbSNP
rs558220435 1044 dbSNP
rs1247055552 1046 dbSNP
rs1290020579 1049 dbSNP
rs893524602 1052 dbSNP
rs1185018003 1053 dbSNP
rs765349185 1059 dbSNP
rs935464082 1060 dbSNP
rs950906025 1066 dbSNP
rs1026565788 1070 dbSNP
rs1346828558 1073 dbSNP
rs928120163 1074 dbSNP
rs116326244 1076 dbSNP
rs1386159967 1086 dbSNP
rs1454820407 1087 dbSNP
rs1315976487 1092 dbSNP
rs1378546244 1096 dbSNP
rs1415749133 1097 dbSNP
rs1309819317 1104 dbSNP
rs960846556 1114 dbSNP
rs1317996485 1118 dbSNP
rs1228294747 1127 dbSNP
rs1266670242 1128 dbSNP
rs566220804 1131 dbSNP
rs1462930894 1136 dbSNP
rs190509088 1137 dbSNP
rs1205243585 1144 dbSNP
rs948277194 1152 dbSNP
rs1482646166 1153 dbSNP
rs1173609690 1158 dbSNP
rs1033870156 1161 dbSNP
rs576791824 1162 dbSNP
rs1184834171 1171 dbSNP
rs754061785 1173 dbSNP
rs1251454436 1176 dbSNP
rs556964440 1179 dbSNP
rs570868240 1184 dbSNP
rs764492754 1186 dbSNP
rs1358756043 1191 dbSNP
rs1022337998 1193 dbSNP
rs536427885 1194 dbSNP
rs892163605 1196 dbSNP
rs963426648 1200 dbSNP
rs1269760672 1202 dbSNP
rs138805128 1204 dbSNP
rs551173578 1208 dbSNP
rs955000479 1213 dbSNP
rs531085941 1214 dbSNP
rs1278933010 1216 dbSNP
rs796288079 1216 dbSNP
rs571909080 1220 dbSNP
rs1340492038 1225 dbSNP
rs998083681 1233 dbSNP
rs1483096217 1242 dbSNP
rs963912901 1244 dbSNP
rs1249440811 1246 dbSNP
rs554090792 1252 dbSNP
rs1010960857 1254 dbSNP
rs192279673 1263 dbSNP
rs1404614525 1266 dbSNP
rs1413020410 1271 dbSNP
rs1161824016 1272 dbSNP
rs112501399 1277 dbSNP
rs77917894 1284 dbSNP
rs568701147 1288 dbSNP
rs999280133 1290 dbSNP
rs1407739733 1291 dbSNP
rs1049651796 1296 dbSNP
rs1437657545 1299 dbSNP
rs1156996816 1301 dbSNP
rs906314171 1303 dbSNP
rs1046588380 1304 dbSNP
rs1473915630 1305 dbSNP
rs559881393 1309 dbSNP
rs1217190609 1310 dbSNP
rs1238096969 1311 dbSNP
rs919281717 1314 dbSNP
rs992386299 1320 dbSNP
rs948225226 1323 dbSNP
rs960960539 1325 dbSNP
rs916809338 1330 dbSNP
rs1490833194 1331 dbSNP
rs1459913266 1344 dbSNP
rs1245978631 1354 dbSNP
rs1476910591 1368 dbSNP
rs1188517489 1379 dbSNP
rs543171352 1385 dbSNP
rs529898442 1387 dbSNP
rs1328156278 1392 dbSNP
rs1166742572 1399 dbSNP
rs980965143 1400 dbSNP
rs968658227 1401 dbSNP
rs1022035061 1403 dbSNP
rs1418925969 1417 dbSNP
rs1283062434 1427 dbSNP
rs116952160 1428 dbSNP
rs956358420 1436 dbSNP
rs1029304853 1440 dbSNP
rs1323076058 1441 dbSNP
rs45571435 1442 dbSNP
rs954781793 1443 dbSNP
rs1294818379 1455 dbSNP
rs1357843478 1457 dbSNP
rs899758217 1482 dbSNP
rs1210417496 1483 dbSNP
rs1344935949 1486 dbSNP
rs923383468 1487 dbSNP
rs1316734751 1496 dbSNP
rs1039903956 1508 dbSNP
rs1407274559 1514 dbSNP
rs1005381883 1528 dbSNP
rs1248906154 1528 dbSNP
rs1186879699 1531 dbSNP
rs888311615 1538 dbSNP
rs1049126761 1541 dbSNP
rs751599608 1549 dbSNP
rs55833862 1555 dbSNP
rs1412206964 1557 dbSNP
rs1402827970 1564 dbSNP
rs1163001775 1567 dbSNP
rs1388318152 1570 dbSNP
rs1018113852 1572 dbSNP
rs1341754728 1580 dbSNP
rs1442787891 1581 dbSNP
rs919229654 1587 dbSNP
rs767127760 1590 dbSNP
rs1354110648 1592 dbSNP
rs1056484814 1595 dbSNP
rs1219559384 1607 dbSNP
rs1268576028 1608 dbSNP
rs1464273659 1611 dbSNP
rs1392115895 1617 dbSNP
rs1245137508 1626 dbSNP
rs531682162 1631 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048188. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_ptb_knockdown ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uaCAGGGUGGGG-GUGAGGACa 5'
            | |: ::|::  ||||||| 
Target 5' caGGCUGGUCUUGAACUCCUG- 3'
10 - 30
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760630. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1048188
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_ptb_knockdown
Location of target site ENST00000598312.1 | 3UTR | UGUGUUGGCCAGGCUGGUCUUGAACUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
256 hsa-miR-4433a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088097 SEPT2 septin 2 2 2
MIRT143134 MGRN1 mahogunin ring finger 1 2 2
MIRT153912 NCOA3 nuclear receptor coactivator 3 2 2
MIRT154894 GNAS GNAS complex locus 2 4
MIRT200996 ZNF805 zinc finger protein 805 2 2
MIRT215729 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT235593 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT263250 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT317951 CDC5L cell division cycle 5 like 2 4
MIRT325572 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT354739 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT444552 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 4
MIRT446978 SUSD5 sushi domain containing 5 2 2
MIRT451036 ZNF610 zinc finger protein 610 2 2
MIRT451596 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT452025 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452594 CA6 carbonic anhydrase 6 2 2
MIRT452768 TCEA3 transcription elongation factor A3 2 4
MIRT452959 ZNF844 zinc finger protein 844 2 2
MIRT453191 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453382 RHD Rh blood group D antigen 2 2
MIRT453685 CEBPD CCAAT/enhancer binding protein delta 2 2
MIRT455272 DDX39B DExD-box helicase 39B 2 8
MIRT455346 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT456494 SERAC1 serine active site containing 1 2 2
MIRT456585 NID1 nidogen 1 2 2
MIRT456888 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457123 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT457852 ZNF324B zinc finger protein 324B 2 2
MIRT457987 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT459278 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT459625 SLC25A33 solute carrier family 25 member 33 2 2
MIRT459715 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT460057 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460182 UNK unkempt family zinc finger 2 6
MIRT460288 PDE11A phosphodiesterase 11A 2 2
MIRT460841 EGF epidermal growth factor 2 4
MIRT460860 TBC1D19 TBC1 domain family member 19 2 2
MIRT461519 EMC7 ER membrane protein complex subunit 7 2 2
MIRT461729 SLC27A1 solute carrier family 27 member 1 2 4
MIRT461821 SNAP23 synaptosome associated protein 23 2 2
MIRT462066 CCDC77 coiled-coil domain containing 77 2 4
MIRT462084 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462508 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 10
MIRT464239 VCP valosin containing protein 2 2
MIRT465316 TRAF5 TNF receptor associated factor 5 2 2
MIRT466549 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467128 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468091 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT469630 RAD21 RAD21 cohesin complex component 2 6
MIRT471097 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472704 MYBL1 MYB proto-oncogene like 1 2 2
MIRT472830 MTMR10 myotubularin related protein 10 2 2
MIRT472872 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT472895 MTDH metadherin 2 2
MIRT473728 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT473859 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474047 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT474297 LAMC1 laminin subunit gamma 1 2 2
MIRT474658 KLF13 Kruppel like factor 13 2 2
MIRT475234 IKZF3 IKAROS family zinc finger 3 2 2
MIRT475500 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT475742 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT475793 HDGF heparin binding growth factor 2 2
MIRT477254 ERGIC2 ERGIC and golgi 2 2 2
MIRT478228 DDX52 DExD-box helicase 52 2 2
MIRT478393 DCTN5 dynactin subunit 5 2 2
MIRT478754 CS citrate synthase 2 2
MIRT478827 CRKL CRK like proto-oncogene, adaptor protein 2 4
MIRT480234 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480597 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT484121 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT484689 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486331 C11orf54 chromosome 11 open reading frame 54 2 4
MIRT488599 FAM3C family with sequence similarity 3 member C 2 8
MIRT488833 MRRF mitochondrial ribosome recycling factor 2 2
MIRT492523 RAB15 RAB15, member RAS oncogene family 2 4
MIRT493632 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500026 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501075 SMAD7 SMAD family member 7 2 8
MIRT503094 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503336 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT505465 STMN1 stathmin 1 2 4
MIRT505726 SERTAD3 SERTA domain containing 3 2 4
MIRT509333 MS4A4A membrane spanning 4-domains A4A 2 2
MIRT509978 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 4
MIRT513068 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT513446 EMP1 epithelial membrane protein 1 2 6
MIRT513736 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT513996 CENPQ centromere protein Q 2 4
MIRT516538 MIXL1 Mix paired-like homeobox 2 2
MIRT517606 SAV1 salvador family WW domain containing protein 1 2 2
MIRT518064 CEP89 centrosomal protein 89 2 2
MIRT518119 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT518325 WDR92 WD repeat domain 92 2 2
MIRT519048 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT520972 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521359 RPL35A ribosomal protein L35a 2 2
MIRT523359 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT523801 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT524622 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT525550 PHB2 prohibitin 2 2 4
MIRT529709 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT531605 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT532387 UMPS uridine monophosphate synthetase 2 2
MIRT534468 SCD stearoyl-CoA desaturase 2 4
MIRT537546 ETNK1 ethanolamine kinase 1 2 2
MIRT541619 C11orf31 selenoprotein H 2 2
MIRT548380 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT549523 HDDC2 HD domain containing 2 2 2
MIRT549774 SOD2 superoxide dismutase 2 2 2
MIRT550578 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551498 CENPN centromere protein N 2 4
MIRT552301 ITGA3 integrin subunit alpha 3 2 2
MIRT555400 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556399 LUC7L LUC7 like 2 2
MIRT557047 HOXB3 homeobox B3 2 2
MIRT558072 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 2
MIRT559659 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT561239 ZNF354B zinc finger protein 354B 2 2
MIRT566899 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT568786 FAM120B family with sequence similarity 120B 2 2
MIRT574014 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT574885 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 2
MIRT575243 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576194 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576309 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576484 Lhx4 LIM homeobox protein 4 2 3
MIRT576646 Mill2 MHC I like leukocyte 2 1 1
MIRT576708 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576855 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576950 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT617133 ZNF556 zinc finger protein 556 2 4
MIRT617928 ZNF783 zinc finger family member 783 2 2
MIRT618981 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT621100 SIX3 SIX homeobox 3 2 2
MIRT624537 BROX BRO1 domain and CAAX motif containing 2 2
MIRT625663 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT627059 DCTN6 dynactin subunit 6 2 2
MIRT628319 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT630859 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632295 TMEM65 transmembrane protein 65 2 2
MIRT634115 ZNF207 zinc finger protein 207 2 2
MIRT634736 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635655 NDST3 N-deacetylase and N-sulfotransferase 3 2 2
MIRT635772 PDCL3 phosducin like 3 2 2
MIRT635911 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT636365 OGFRL1 opioid growth factor receptor like 1 2 4
MIRT637251 GLRX2 glutaredoxin 2 2 2
MIRT638705 FZD4 frizzled class receptor 4 2 2
MIRT639640 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT639676 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT642267 SMIM17 small integral membrane protein 17 2 2
MIRT642372 ZNF581 zinc finger protein 581 2 2
MIRT643545 SLC25A17 solute carrier family 25 member 17 2 2
MIRT647994 PDE12 phosphodiesterase 12 2 2
MIRT649094 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT650993 ZNF770 zinc finger protein 770 2 2
MIRT651956 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT652977 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT654389 RBM12B RNA binding motif protein 12B 2 2
MIRT655637 OLFML2A olfactomedin like 2A 2 2
MIRT655729 NRXN3 neurexin 3 2 2
MIRT658171 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT660937 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662112 CERKL ceramide kinase like 2 2
MIRT662302 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT662993 TMEM59 transmembrane protein 59 2 2
MIRT663071 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663704 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663864 MUC20 mucin 20, cell surface associated 2 2
MIRT665185 HAUS5 HAUS augmin like complex subunit 5 2 4
MIRT665402 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665688 TNPO3 transportin 3 2 2
MIRT665795 TMEM170A transmembrane protein 170A 2 2
MIRT665847 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT666999 PDPN podoplanin 2 2
MIRT667598 LIPC lipase C, hepatic type 2 2
MIRT668576 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT670960 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT671187 ZNF891 zinc finger protein 891 2 2
MIRT671739 ZNF451 zinc finger protein 451 2 2
MIRT672745 ZNF585B zinc finger protein 585B 2 4
MIRT673446 ZNF583 zinc finger protein 583 2 2
MIRT679843 GPR75 G protein-coupled receptor 75 2 2
MIRT680556 ZNF584 zinc finger protein 584 2 2
MIRT680661 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT681285 RFC2 replication factor C subunit 2 2 2
MIRT683264 ZNF329 zinc finger protein 329 2 2
MIRT684519 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT685065 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685157 DTWD2 DTW domain containing 2 2 2
MIRT685168 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685470 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686001 NEK4 NIMA related kinase 4 2 2
MIRT687027 RNF24 ring finger protein 24 2 2
MIRT687543 MOB1B MOB kinase activator 1B 2 2
MIRT687592 MANEAL mannosidase endo-alpha like 2 2
MIRT687753 KIAA1328 KIAA1328 2 2
MIRT688050 GLUL glutamate-ammonia ligase 2 2
MIRT688374 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT688802 CBFA2T3 CBFA2/RUNX1 translocation partner 3 2 2
MIRT688957 ATXN3 ataxin 3 2 2
MIRT689281 C5AR2 complement component 5a receptor 2 2 2
MIRT689988 NNMT nicotinamide N-methyltransferase 2 2
MIRT689997 MMP17 matrix metallopeptidase 17 2 2
MIRT690014 LUZP2 leucine zipper protein 2 2 2
MIRT690161 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690379 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690563 MICA MHC class I polypeptide-related sequence A 2 2
MIRT691891 EVC EvC ciliary complex subunit 1 2 2
MIRT693107 SCNM1 sodium channel modifier 1 2 2
MIRT693832 ZFP64 ZFP64 zinc finger protein 2 2
MIRT694105 ZNF446 zinc finger protein 446 2 2
MIRT694179 ZNF486 zinc finger protein 486 2 2
MIRT694475 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694998 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695031 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695163 TCTN2 tectonic family member 2 2 2
MIRT695525 SLC25A34 solute carrier family 25 member 34 2 2
MIRT696067 ZNF264 zinc finger protein 264 2 2
MIRT696616 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696661 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696705 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT697173 INMT indolethylamine N-methyltransferase 2 2
MIRT697303 ZNF652 zinc finger protein 652 2 2
MIRT697491 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT698657 TERF2 telomeric repeat binding factor 2 2 2
MIRT699042 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699185 SLX4IP SLX4 interacting protein 2 2
MIRT699598 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700150 RNF115 ring finger protein 115 2 2
MIRT700720 PNO1 partner of NOB1 homolog 2 2
MIRT700870 PER2 period circadian clock 2 2 2
MIRT700912 PDXK pyridoxal kinase 2 2
MIRT701095 PAPOLG poly(A) polymerase gamma 2 2
MIRT701194 OTUD3 OTU deubiquitinase 3 2 2
MIRT702203 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702272 LHX4 LIM homeobox 4 2 3
MIRT703125 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703252 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703262 GNL3L G protein nucleolar 3 like 2 2
MIRT703440 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704321 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704393 CTSS cathepsin S 2 2
MIRT704483 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704880 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT704926 CCDC36 coiled-coil domain containing 36 2 2
MIRT705175 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT706561 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT707048 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT711497 PGD phosphogluconate dehydrogenase 2 2
MIRT716644 EPGN epithelial mitogen 2 2
MIRT720083 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT722288 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT725468 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4433a Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4433a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4433a Vincristine 5978 approved resistant cell line (W1)
hsa-mir-4433a Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4433a-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-4433a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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