pre-miRNA Information
pre-miRNA hsa-mir-3120   
Genomic Coordinates chr1: 172138808 - 172138888
Description Homo sapiens miR-3120 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3120-5p
Sequence 13| CCUGUCUGUGCCUGCUGUACA |33
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 1 + 172138838 26449202, 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26637643 8 COSMIC
COSN31603497 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386761 8 dbSNP
rs760725207 9 dbSNP
rs766486759 10 dbSNP
rs754055278 12 dbSNP
rs755288536 19 dbSNP
rs754726014 21 dbSNP
Putative Targets

Gene Information
Gene Symbol TUFT1   
Synonyms -
Description tuftelin 1
Transcript NM_001126337   
Other Transcripts NM_020127   
Expression
Putative miRNA Targets on TUFT1
3'UTR of TUFT1
(miRNA target sites are highlighted)
>TUFT1|NM_001126337|3'UTR
   1 GCTGCCTGGAGATGGTTGCTGCCATTGCTGCTGCCTCTGCCTCGGAGAAGCCCACTGCCCCTGTTGGCTGTTAACACTGC
  81 CTTTGACTTCCTGACTGTCCCCTGGCTGCACCCAGGACTTCGGGCTCCTGTGTCTCACCATTCCCAAGCCCCTGGCCACT
 161 CTAAGCTGGGCAGACGGAGCACGAGCACCTATTCAAGGCACTGCAGCCCTTTGGAAGACATTGTCCTGCAAGCAGGAGCC
 241 AGGGCAATATCTATATTCCTACAGTGACTATTTTTCTCTGTAGAGAGCCTCCCTTCTGTTGTAGACTGGACTCTGGCTGT
 321 GCCATAAGCCAGGCCTTCATCAGATTGGGAGAGGTGACAAGATTTGCCTCAGCCCTAAAAGCTGGAGACACAGATGTCCA
 401 GAGTGATTGGAGAATGTCCTGGGGGAATGAAGTTCCTTCCACAAACACAGCTCAGTTCTTAGCAACAAACTGTTTGTTTT
 481 TCTACTTGCTCCATCTGCAGCCTACGCTGCCCTGGCCTCCTGCAGACAGATAGTGGGGTTACCTGGCAAGGCCTGGTGAG
 561 AGCCAGTGAACCTAAGCTTTGACTGGGTGGCCTTGTCTTTCTGGGGAGGAGGGAATGTACATTCAGGGAGTAGCCTTTTG
 641 CGGAAAAATTCTCTAGGGCTACAGACAGTCATGTGTGACTTCTCTCTGCTGTGAAAACTCCCAGAGTCTCTTTAGGGATT
 721 TTCCCTAAGGTGTACCACCAGGCACACCTCAGTCTTCTTGACCCAGAGCCTGAAAACTGTTTTCACTGGGTTCCACCAGT
 801 CCCAGCAAAATCCTCTTTGTATTTATTTTGCTAAGTTATTGGTGGTTTTGCTTACATCTCATGATTGATATAATACCAAA
 881 GTTCTATAGCCTTCTCTTGCAGTATTTGGATTTGCTTGAAACCGGGAAAACTGTTCCCATTAGGCTTGTTAATGTCAGAG
 961 TGACACTATTATGAATCTTTCTCTCCCTTTCCTCTGCCTGTTTCTTCTCTCTTTCTCCTTCAAACTTGCTCTGCAGCTAA
1041 GGAAGGTGAGTCTACTTTCCCTGAGGCTTTGGGGTCAGAGTATATGTTGTTTGGAGAAAGAGGGCAATCAGGACTCTTCT
1121 GGGACCCAGATGAGTTCTTCACTAGCCCTTCTGAACCCCTTGCTCCATAATTGGTCTTTTATCCTGGCTCTGAATGACCC
1201 TGCAGGTCATCATGGTTTTCTTTTTTTATTGTTTTTTTTTTTTTCTGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAG
1281 TGCAGTGGCGCGATCTCAGCTCACTGCAACCTCTGCCTCCCGGATTTAAGCGATTCTTCTGCCTCAGCCTCCCGAGTAGC
1361 TGGGACTACAGGTGTGCCACCACGCCTGGCTGATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATACTGGCTAGGCT
1441 GGTCTCGAATTCCTGACCTCAGGTGATCCACCCACCTCGGCTTCCCAAAGTGCTAGGATTATAGGCTTGAGCTACTGCGC
1521 CCGGCCCATGGTGTTTTTCTTTAGGGCTCTTCCTACAACCTTGAGAAGTAGATAGGCATCAGAGTATGGTACTATAGGAA
1601 TCAGAAAAATTCAAAACAAATGTGGATTAAGTGTTTAGGCTCTATGTGGCTCACGCAGCCAGAATCCTTAAGTCTGTGTG
1681 TTTCTGTGTCTCAAGACTGGGCTCACATTCTGGCTTTGTCCATAACAATGCTCTGGGATTTCAGGGAGTTCCCTCATTTG
1761 TAAAATGAGGGGGTCAGAGCAGGTGATATCCATGTTTCTTCCCTTTCTGATATTGTTGTCTGTGGCATATTCTTTGTATG
1841 GCGAATTTAATAAATTATATTAATGTGTCTCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1921 AAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acAUGUCGUCCG-UGUCUGUCc 5'
            | :||  ||| |||||||| 
Target 5' tcTCTAG--GGCTACAGACAGt 3'
650 - 669 155.00 -16.00
2
miRNA  3' acAUGU--C--GUCCG-----UGUCUGUCc 5'
            |||:  |  | |||     :||||||| 
Target 5' ccTACGCTGCCCTGGCCTCCTGCAGACAGa 3'
501 - 530 143.00 -13.40
3
miRNA  3' acAUGUCGUCCGUGUCUGUCc 5'
            || ||| || :|||||:| 
Target 5' tcTA-AGCTGG-GCAGACGGa 3'
160 - 178 141.00 -17.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30535346 24 COSMIC
COSN30687099 31 COSMIC
COSN30463667 44 COSMIC
COSN31535099 59 COSMIC
COSN30477116 91 COSMIC
COSN31577853 157 COSMIC
COSN31524426 199 COSMIC
COSN21017288 205 COSMIC
COSN22151052 300 COSMIC
COSN30631272 511 COSMIC
COSN20852686 1212 COSMIC
COSN15956196 1260 COSMIC
COSN15745587 1349 COSMIC
COSN22199831 1356 COSMIC
COSN22126398 1384 COSMIC
COSN29683693 1509 COSMIC
COSN22523220 1568 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1350646585 2 dbSNP
rs1297799396 5 dbSNP
rs1212293334 12 dbSNP
rs370973236 13 dbSNP
rs762050269 15 dbSNP
rs778995581 15 dbSNP
rs1178437659 19 dbSNP
rs971928174 20 dbSNP
rs750346851 23 dbSNP
rs1432255913 27 dbSNP
rs1196430450 29 dbSNP
rs151123380 32 dbSNP
rs758320886 36 dbSNP
rs766362881 38 dbSNP
rs1167942810 40 dbSNP
rs1370019123 42 dbSNP
rs374640855 44 dbSNP
rs114820297 45 dbSNP
rs1397433075 46 dbSNP
rs1429432083 52 dbSNP
rs1263512977 55 dbSNP
rs1192479546 58 dbSNP
rs1200466452 59 dbSNP
rs541369029 69 dbSNP
rs1344262079 80 dbSNP
rs768130406 94 dbSNP
rs954805147 97 dbSNP
rs986226634 101 dbSNP
rs979590596 107 dbSNP
rs868576796 112 dbSNP
rs1398368707 118 dbSNP
rs1265201348 122 dbSNP
rs139986583 123 dbSNP
rs1395482136 137 dbSNP
rs1400716903 143 dbSNP
rs185345071 149 dbSNP
rs1266766931 150 dbSNP
rs924922650 156 dbSNP
rs1168913542 168 dbSNP
rs370396908 170 dbSNP
rs552693307 176 dbSNP
rs767950199 177 dbSNP
rs1362821702 180 dbSNP
rs1441315030 183 dbSNP
rs750903291 203 dbSNP
rs1254046683 206 dbSNP
rs918006976 207 dbSNP
rs563001319 211 dbSNP
rs1318406006 213 dbSNP
rs1257204131 215 dbSNP
rs374935262 218 dbSNP
rs79250719 230 dbSNP
rs1337261579 241 dbSNP
rs1047748284 244 dbSNP
rs895977936 246 dbSNP
rs1338743053 248 dbSNP
rs948862123 249 dbSNP
rs114877294 250 dbSNP
rs1301825218 253 dbSNP
rs1347990450 254 dbSNP
rs904905912 264 dbSNP
rs1400127965 271 dbSNP
rs143483175 288 dbSNP
rs34536167 288 dbSNP
rs564906757 288 dbSNP
rs1005917299 289 dbSNP
rs199973844 292 dbSNP
rs1016338759 294 dbSNP
rs780053244 298 dbSNP
rs996683357 299 dbSNP
rs1366185969 307 dbSNP
rs1891592 321 dbSNP
rs890859277 322 dbSNP
rs1386464630 325 dbSNP
rs1301680498 329 dbSNP
rs1373727114 330 dbSNP
rs1235662423 333 dbSNP
rs11204852 334 dbSNP
rs1306285167 335 dbSNP
rs1030224803 336 dbSNP
rs756464329 338 dbSNP
rs567616992 339 dbSNP
rs1211492125 341 dbSNP
rs1254629955 346 dbSNP
rs966937574 348 dbSNP
rs954544982 355 dbSNP
rs1454597914 357 dbSNP
rs1187698927 360 dbSNP
rs1417227532 375 dbSNP
rs1309249969 376 dbSNP
rs34232906 377 dbSNP
rs536452355 379 dbSNP
rs1354443083 384 dbSNP
rs1281358485 387 dbSNP
rs1172586829 391 dbSNP
rs985921894 401 dbSNP
rs749776915 405 dbSNP
rs1017697441 410 dbSNP
rs1396968001 413 dbSNP
rs771668745 415 dbSNP
rs1442028623 419 dbSNP
rs1320333805 421 dbSNP
rs1307681899 425 dbSNP
rs969200855 441 dbSNP
rs771294104 449 dbSNP
rs774952610 450 dbSNP
rs745875107 454 dbSNP
rs1231066279 459 dbSNP
rs1237032415 459 dbSNP
rs978824885 463 dbSNP
rs1274584208 464 dbSNP
rs1456027416 467 dbSNP
rs372988276 467 dbSNP
rs1159827460 471 dbSNP
rs139602364 471 dbSNP
rs201617051 474 dbSNP
rs934945011 478 dbSNP
rs993055783 481 dbSNP
rs918023735 485 dbSNP
rs779098046 486 dbSNP
rs948893308 492 dbSNP
rs1044533259 493 dbSNP
rs1474883537 494 dbSNP
rs1220476540 495 dbSNP
rs1162894078 505 dbSNP
rs569750964 506 dbSNP
rs538329147 507 dbSNP
rs1158846651 513 dbSNP
rs1343852226 517 dbSNP
rs1353037457 518 dbSNP
rs772290511 527 dbSNP
rs879317202 528 dbSNP
rs1379082287 529 dbSNP
rs983469091 532 dbSNP
rs1294618578 538 dbSNP
rs1170521320 540 dbSNP
rs1335044172 542 dbSNP
rs149836706 543 dbSNP
rs939925316 553 dbSNP
rs1281873612 565 dbSNP
rs1318577817 580 dbSNP
rs1394788362 585 dbSNP
rs897497024 586 dbSNP
rs1329017763 588 dbSNP
rs1299624252 590 dbSNP
rs190105482 591 dbSNP
rs1359342320 609 dbSNP
rs745766190 612 dbSNP
rs993138411 617 dbSNP
rs41310881 622 dbSNP
rs1174590332 623 dbSNP
rs371536447 627 dbSNP
rs1425741871 630 dbSNP
rs1190434394 632 dbSNP
rs1476906305 636 dbSNP
rs534589024 642 dbSNP
rs1361434852 643 dbSNP
rs890896306 652 dbSNP
rs775072087 653 dbSNP
rs1007433868 655 dbSNP
rs1017853647 656 dbSNP
rs1197391365 661 dbSNP
rs1213030025 665 dbSNP
rs1313328754 671 dbSNP
rs1278475962 674 dbSNP
rs1217879634 676 dbSNP
rs530289634 682 dbSNP
rs902222868 684 dbSNP
rs75843578 685 dbSNP
rs1033032113 689 dbSNP
rs1181157445 699 dbSNP
rs979243573 706 dbSNP
rs1445693305 708 dbSNP
rs1170353571 713 dbSNP
rs1359726181 724 dbSNP
rs1371909851 725 dbSNP
rs1175235482 733 dbSNP
rs1412610777 736 dbSNP
rs1421375545 743 dbSNP
rs1171056666 753 dbSNP
rs991408637 763 dbSNP
rs768480633 785 dbSNP
rs1190176262 786 dbSNP
rs1483604002 788 dbSNP
rs1463830935 791 dbSNP
rs1237451986 798 dbSNP
rs1299136781 807 dbSNP
rs1400423043 827 dbSNP
rs1031730200 837 dbSNP
rs200586630 851 dbSNP
rs1405563542 861 dbSNP
rs1439976317 867 dbSNP
rs774033494 871 dbSNP
rs1218363590 878 dbSNP
rs1316946018 879 dbSNP
rs992750914 882 dbSNP
rs917531745 887 dbSNP
rs1275889497 901 dbSNP
rs1229580983 911 dbSNP
rs543610443 916 dbSNP
rs1445757054 917 dbSNP
rs970280387 924 dbSNP
rs1434546452 925 dbSNP
rs1421815832 932 dbSNP
rs1464861441 932 dbSNP
rs980317007 939 dbSNP
rs1167139583 946 dbSNP
rs910026898 954 dbSNP
rs1413147584 961 dbSNP
rs983500303 969 dbSNP
rs141652322 978 dbSNP
rs868103626 992 dbSNP
rs116851395 996 dbSNP
rs973407515 1006 dbSNP
rs1456695077 1008 dbSNP
rs1255839018 1010 dbSNP
rs1322319754 1012 dbSNP
rs919864661 1018 dbSNP
rs879819828 1019 dbSNP
rs928963628 1024 dbSNP
rs1051421650 1031 dbSNP
rs1309857761 1036 dbSNP
rs1244664918 1041 dbSNP
rs1397842457 1044 dbSNP
rs1461367323 1055 dbSNP
rs545198863 1056 dbSNP
rs1349446881 1064 dbSNP
rs1162798461 1065 dbSNP
rs1441596881 1068 dbSNP
rs145422316 1069 dbSNP
rs912362862 1073 dbSNP
rs1260218507 1074 dbSNP
rs1269933662 1080 dbSNP
rs1038896523 1087 dbSNP
rs943866979 1099 dbSNP
rs1042159909 1101 dbSNP
rs902252983 1102 dbSNP
rs1355182734 1103 dbSNP
rs1000969358 1104 dbSNP
rs904370528 1105 dbSNP
rs1429034090 1106 dbSNP
rs1303137829 1120 dbSNP
rs895405411 1121 dbSNP
rs1012460546 1122 dbSNP
rs1178839750 1124 dbSNP
rs1291971590 1126 dbSNP
rs1421670561 1143 dbSNP
rs1361233383 1148 dbSNP
rs1158067292 1149 dbSNP
rs1418416038 1158 dbSNP
rs1379840799 1163 dbSNP
rs1000011730 1168 dbSNP
rs970917652 1169 dbSNP
rs1005050154 1171 dbSNP
rs1015036813 1180 dbSNP
rs1489018258 1185 dbSNP
rs1263288094 1191 dbSNP
rs1215178062 1192 dbSNP
rs1351457630 1195 dbSNP
rs1359713953 1201 dbSNP
rs1257670057 1207 dbSNP
rs750909774 1207 dbSNP
rs1032177431 1211 dbSNP
rs570011451 1215 dbSNP
rs1311385322 1217 dbSNP
rs1299544681 1226 dbSNP
rs956091647 1227 dbSNP
rs1278525143 1229 dbSNP
rs180696883 1231 dbSNP
rs1173635693 1232 dbSNP
rs1398171697 1232 dbSNP
rs1401188420 1232 dbSNP
rs921918437 1232 dbSNP
rs1024240043 1234 dbSNP
rs185034757 1235 dbSNP
rs1423842923 1243 dbSNP
rs985430060 1245 dbSNP
rs1323861133 1246 dbSNP
rs1214407052 1247 dbSNP
rs1258449057 1248 dbSNP
rs1482856043 1252 dbSNP
rs1487099473 1253 dbSNP
rs912477422 1254 dbSNP
rs1318906156 1257 dbSNP
rs1277779155 1260 dbSNP
rs1187610085 1261 dbSNP
rs980774291 1278 dbSNP
rs1216916255 1281 dbSNP
rs910111362 1286 dbSNP
rs963205888 1289 dbSNP
rs1342333425 1290 dbSNP
rs561256475 1291 dbSNP
rs919043281 1292 dbSNP
rs1395971271 1293 dbSNP
rs943898199 1295 dbSNP
rs530297269 1298 dbSNP
rs1466422137 1307 dbSNP
rs929038920 1316 dbSNP
rs1202099633 1322 dbSNP
rs1051452222 1323 dbSNP
rs1369716237 1325 dbSNP
rs1400369315 1332 dbSNP
rs911547716 1333 dbSNP
rs1347043258 1351 dbSNP
rs1454429998 1354 dbSNP
rs190898952 1355 dbSNP
rs1458020020 1363 dbSNP
rs1257736358 1367 dbSNP
rs1194280415 1369 dbSNP
rs1039385042 1373 dbSNP
rs766869163 1374 dbSNP
rs1244103878 1375 dbSNP
rs904402728 1378 dbSNP
rs936410712 1378 dbSNP
rs1364937943 1381 dbSNP
rs550373964 1384 dbSNP
rs184002074 1385 dbSNP
rs894775526 1391 dbSNP
rs891903136 1396 dbSNP
rs539210507 1400 dbSNP
rs1014277436 1401 dbSNP
rs1163359574 1409 dbSNP
rs1392388053 1409 dbSNP
rs1456950892 1416 dbSNP
rs1222857395 1421 dbSNP
rs1012317553 1426 dbSNP
rs1304504436 1427 dbSNP
rs1440141716 1428 dbSNP
rs188849638 1434 dbSNP
rs970049541 1447 dbSNP
rs1001504645 1450 dbSNP
rs1017610235 1455 dbSNP
rs962984306 1456 dbSNP
rs904154636 1462 dbSNP
rs1025800355 1464 dbSNP
rs1209367341 1471 dbSNP
rs1015069347 1475 dbSNP
rs1225125970 1479 dbSNP
rs963799867 1480 dbSNP
rs950476419 1496 dbSNP
rs1376729959 1518 dbSNP
rs6587605 1519 dbSNP
rs1438995962 1520 dbSNP
rs111475560 1522 dbSNP
rs574798681 1523 dbSNP
rs557009920 1524 dbSNP
rs987416320 1528 dbSNP
rs536917546 1530 dbSNP
rs943034432 1534 dbSNP
rs974403748 1540 dbSNP
rs1379570028 1545 dbSNP
rs1156614761 1547 dbSNP
rs1410508240 1548 dbSNP
rs867104765 1556 dbSNP
rs12749 1559 dbSNP
rs576997652 1560 dbSNP
rs935912399 1564 dbSNP
rs1052910273 1572 dbSNP
rs1265433760 1573 dbSNP
rs1217385899 1578 dbSNP
rs891641832 1579 dbSNP
rs147671886 1585 dbSNP
rs1045794203 1589 dbSNP
rs1221337085 1596 dbSNP
rs1346142791 1601 dbSNP
rs905913359 1605 dbSNP
rs923737081 1615 dbSNP
rs1403964070 1618 dbSNP
rs1304663058 1621 dbSNP
rs1343177542 1627 dbSNP
rs1001975169 1629 dbSNP
rs1016934585 1634 dbSNP
rs375016492 1645 dbSNP
rs898766547 1655 dbSNP
rs558628944 1656 dbSNP
rs1296071866 1660 dbSNP
rs1344583777 1661 dbSNP
rs1316095202 1663 dbSNP
rs1416019541 1675 dbSNP
rs1025873897 1677 dbSNP
rs572167394 1689 dbSNP
rs1479597594 1693 dbSNP
rs1425996582 1699 dbSNP
rs955544437 1728 dbSNP
rs1487987766 1732 dbSNP
rs867141819 1733 dbSNP
rs1375131549 1740 dbSNP
rs986929285 1741 dbSNP
rs1018716032 1758 dbSNP
rs1443434337 1763 dbSNP
rs1313769167 1770 dbSNP
rs1278363285 1773 dbSNP
rs916312423 1775 dbSNP
rs1320997830 1781 dbSNP
rs1357854812 1784 dbSNP
rs1218751496 1785 dbSNP
rs1349548148 1786 dbSNP
rs947768469 1788 dbSNP
rs1267842884 1793 dbSNP
rs1450134193 1804 dbSNP
rs964488520 1813 dbSNP
rs149147519 1828 dbSNP
rs906795128 1829 dbSNP
rs539160997 1843 dbSNP
rs116160142 1844 dbSNP
rs5777777 1846 dbSNP
rs759899479 1846 dbSNP
rs1477567798 1851 dbSNP
rs1417473176 1859 dbSNP
rs1234786665 1861 dbSNP
rs1481098865 1870 dbSNP
rs899366279 1870 dbSNP
rs7539991 1876 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048188. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_ptb_knockdown ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acaugucguccgugUCUGUCc 5'
                        |||||| 
Target 5' ---------uucugAGACAGa 3'
1 - 12
2
miRNA  3' acaugucGUCCGU--GUCUGUCc 5'
                 | | ||  |||:| | 
Target 5' ucucacuCUGUCACCCAGGCUGg 3'
14 - 36
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_020127 | 3UTR | UUUUUUUUUUCUGAGACAGAGUCUCACUCUGUCACCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001126337 | 3UTR | UUUUUUUUUCUGAGACAGAGUCUCACUCUGUCACCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001126337 | 3UTR | UUUUUUCUGAGACAGAGUCUCACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001126337 | 3UTR | UUUUUUUCUGAGACAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_020127 | 3UTR | UUUUUUCUGAGACAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001126337 | 3UTR | UUUUUUUUUCUGAGACAGAGUCUCACUCUGUCACCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1048188
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_ptb_knockdown
Location of target site ENST00000368849.3 | 3UTR | UUCUGAGACAGAGUCUCACUCUGUCACCCAGGCUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-3120-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT096972 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT442624 LOX lysyl oxidase 2 2
MIRT473438 MDM4 MDM4, p53 regulator 2 2
MIRT490011 KIFC2 kinesin family member C2 2 2
MIRT496449 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496752 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT497721 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT498287 PADI3 peptidyl arginine deiminase 3 2 2
MIRT503195 ACVR1B activin A receptor type 1B 2 4
MIRT504760 TEP1 telomerase associated protein 1 2 4
MIRT517810 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT519686 ZNF622 zinc finger protein 622 2 4
MIRT520263 URGCP upregulator of cell proliferation 2 2
MIRT523051 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT525601 OLR1 oxidized low density lipoprotein receptor 1 2 4
MIRT526995 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528699 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT533142 WNT10A Wnt family member 10A 2 2
MIRT537618 ERI1 exoribonuclease 1 2 2
MIRT539707 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539752 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT539808 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT539941 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT540424 FAM83F family with sequence similarity 83 member F 2 2
MIRT540509 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540720 GUF1 GUF1 homolog, GTPase 2 2
MIRT541630 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT542286 POLR3K RNA polymerase III subunit K 2 2
MIRT542456 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542550 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542771 PPAP2B phospholipid phosphatase 3 2 2
MIRT550085 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT551458 CARKD NAD(P)HX dehydratase 2 2
MIRT555622 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT569136 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT572328 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574607 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT575583 Mcm8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT576125 Hrk harakiri, BCL2 interacting protein (contains only BH3 domain) 2 5
MIRT576657 Fam216a family with sequence similarity 216, member A 2 2
MIRT607222 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607292 CD300E CD300e molecule 2 6
MIRT607746 ANGPT4 angiopoietin 4 2 2
MIRT607905 SPRYD4 SPRY domain containing 4 2 2
MIRT608159 HRK harakiri, BCL2 interacting protein 2 7
MIRT608657 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT609115 ZNF703 zinc finger protein 703 2 6
MIRT610231 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT610870 NUDCD3 NudC domain containing 3 2 2
MIRT611217 MC2R melanocortin 2 receptor 2 2
MIRT614858 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT616966 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT617258 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT618009 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT619067 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619295 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619348 GINM1 glycoprotein integral membrane 1 2 2
MIRT619362 CFHR5 complement factor H related 5 2 2
MIRT619541 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT619782 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT619994 NPAP1 nuclear pore associated protein 1 2 2
MIRT621030 CDC14B cell division cycle 14B 2 2
MIRT622033 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622728 PITPNM3 PITPNM family member 3 2 2
MIRT623144 NAV2 neuron navigator 2 2 2
MIRT623600 IPO9 importin 9 2 2
MIRT624608 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT624905 CTCFL CCCTC-binding factor like 2 2
MIRT625030 SPC24 SPC24, NDC80 kinetochore complex component 2 2
MIRT625688 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 5
MIRT626531 EMCN endomucin 2 2
MIRT627204 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT628033 LSAMP limbic system-associated membrane protein 2 2
MIRT628203 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT631012 LINS lines homolog 1 2 2
MIRT633195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633890 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT634023 MOB4 MOB family member 4, phocein 2 2
MIRT634416 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636866 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT642527 ANKRD9 ankyrin repeat domain 9 2 2
MIRT645408 FAM110A family with sequence similarity 110 member A 2 2
MIRT645635 SYTL4 synaptotagmin like 4 2 2
MIRT646013 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT646686 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT652838 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT655156 PHF21B PHD finger protein 21B 2 2
MIRT658491 EXOC7 exocyst complex component 7 2 2
MIRT659398 CORO2A coronin 2A 2 2
MIRT666825 PRCP prolylcarboxypeptidase 2 2
MIRT666866 POU2F2 POU class 2 homeobox 2 2 2
MIRT668224 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit 2 2
MIRT673288 PDE3A phosphodiesterase 3A 2 2
MIRT673878 KLF2 Kruppel like factor 2 2 2
MIRT681721 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 2
MIRT682406 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT684109 MCM10 minichromosome maintenance 10 replication initiation factor 2 2
MIRT684423 TUFT1 tuftelin 1 2 2
MIRT684684 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT686638 TMEM184C transmembrane protein 184C 2 2
MIRT689457 NXN nucleoredoxin 2 2
MIRT689627 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT690773 PLA2G2C phospholipase A2 group IIC 2 2
MIRT690822 SGSM2 small G protein signaling modulator 2 2 2
MIRT693669 MXRA7 matrix remodeling associated 7 2 2
MIRT695553 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695872 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT698160 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT699933 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT708639 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT710816 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT711242 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT711542 MSH3 mutS homolog 3 2 2
MIRT711749 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712303 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT712922 RPF2 ribosome production factor 2 homolog 2 2
MIRT714027 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714768 TERF1 telomeric repeat binding factor 1 2 2
MIRT714844 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715223 NPVF neuropeptide VF precursor 2 2
MIRT716110 GMPS guanine monophosphate synthase 2 2
MIRT716174 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716383 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT716527 KSR2 kinase suppressor of ras 2 2 2
MIRT716962 P2RY6 pyrimidinergic receptor P2Y6 2 2
MIRT717605 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717696 PTGS1 prostaglandin-endoperoxide synthase 1 2 2
MIRT721360 ENTHD1 ENTH domain containing 1 2 2
MIRT721381 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721935 RASSF2 Ras association domain family member 2 2 2
MIRT722094 SUSD1 sushi domain containing 1 2 2
MIRT722837 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT722990 TOR1A torsin family 1 member A 2 2
MIRT724174 ABCF2 ATP binding cassette subfamily F member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3120-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3120-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-3120-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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