pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMEM184C   
Synonyms TMEM34
Description transmembrane protein 184C
Transcript NM_018241   
Expression
Putative miRNA Targets on TMEM184C
3'UTR of TMEM184C
(miRNA target sites are highlighted)
>TMEM184C|NM_018241|3'UTR
   1 ACAGTATGGAAAAGCAAACTGTGCAACTACTACATTATATCATTACCTGGTATCCCATGGATTTTGTGCTTGGGACAGAC
  81 CATAAATGATGGAAAATGTCAACACAAAAATAGCTGAAAGCCAGGTACAACTACTGCATTTATATATGTAAGTTTTGTAT
 161 ATCAAAAATAATTGGTCTAAATTTCCTAGACTTAGACTTGATTTCTTAACATTAGGGTATCGCATACTCAAATGGTAGAC
 241 AATGACCCCAACTAAATCTTCCTGATGTTACACTGCTTTATCAAGAGGATGGACTTTTTTTTTTTTGAGACAGACAGAGT
 321 CTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTCGGGTCACTGCAAGCTCTGCCTCCCAAGTTCATGCCATTC
 401 TCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCTGCCACCATGCCCAGCTAATTTTTTTTTTTTCAGTAGAGA
 481 CAGGGTCTCACCATGTTAGCCAGGATGGTCTTGATCTGACCTCGTGATCCGCCGACCTCGGCCTCCCAAAGTGCTGGAAT
 561 TACAGGCGTGAGCCACTGCGCCTGGCCAAGAATGGACATTTTTTAAAAAAACATCAGTACTTCCTACCACTGCTGCATGA
 641 GTATAATGCTCCGGAATTATCAGAAAGCATAATGCAGAAATACGAATTAGTGGAACTTAATCATGTGCCATATAAGCTTA
 721 CCTAACAAACAGTTATATCCCTATTCCTCAACTGAATGTCTTTCAATAAATAAGAATTTATCATTTATTTTCTGCAACTT
 801 TTTTATGTCTCATTCTTTAAACATTAAAAACCCTTAATATTTTAACAAAAATTTCTTGATTAGAGGCACAGTGAAAAAGA
 881 AGTCAAAAAAAAAAGTTCTACTTTTCATCAGTGCTATTAAAGGTGGCAGCAAATGTAAATCTTGGCTGAATGGTCTTAAT
 961 TACTCATTAAACCACAGTCAGAAAGACATATAGGTGCTATTTGGGAAAACTTTTTATTACCTAGGATGGGGTTTCTCTAA
1041 TTGCTAATCACAACCCCACTGGGTCATGTTTGACATTTTATAATGAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|| |||:  :: ||||||| 
Target 5' tgTCACCCAGGCTGGAGTGCAGt 3'
328 - 350 157.00 -19.40
2
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|||  ||  ||:| ||||| 
Target 5' taTCAG--AAAGCATAATGCAGa 3'
658 - 678 129.00 -14.90
3
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|:|||  | || ||||| | 
Target 5' ccTCGGCC-TCCCAAAGTGCTGg 3'
536 - 557 128.00 -17.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30103873 43 COSMIC
COSN8490205 47 COSMIC
COSN30132485 60 COSMIC
COSN21414431 131 COSMIC
COSN30694439 157 COSMIC
COSN1289144 243 COSMIC
COSN27269298 307 COSMIC
COSN1997907 358 COSMIC
COSN29108022 895 COSMIC
COSN1997909 958 COSMIC
COSN5054179 1097 COSMIC
COSN16522644 1201 COSMIC
COSN5152678 1203 COSMIC
COSN19468400 1325 COSMIC
COSN28043863 1927 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs199963604 3 dbSNP
rs767942054 3 dbSNP
rs750893340 4 dbSNP
rs919454111 4 dbSNP
rs1361356547 8 dbSNP
rs776788811 14 dbSNP
rs1223427806 20 dbSNP
rs748130288 21 dbSNP
rs1487467373 22 dbSNP
rs770089016 24 dbSNP
rs773349724 27 dbSNP
rs1423709052 28 dbSNP
rs763135584 29 dbSNP
rs767353637 38 dbSNP
rs573717384 58 dbSNP
rs1221330600 64 dbSNP
rs1265163595 73 dbSNP
rs142411350 76 dbSNP
rs951665464 77 dbSNP
rs888030127 82 dbSNP
rs111405235 84 dbSNP
rs777828673 90 dbSNP
rs948693393 91 dbSNP
rs1390307779 93 dbSNP
rs1298528531 96 dbSNP
rs1044434852 114 dbSNP
rs1358508611 121 dbSNP
rs556035175 129 dbSNP
rs1158023060 133 dbSNP
rs576178097 136 dbSNP
rs1242028304 139 dbSNP
rs1485204625 148 dbSNP
rs1196258312 149 dbSNP
rs544887206 158 dbSNP
rs749323989 159 dbSNP
rs1031454385 160 dbSNP
rs1194794602 161 dbSNP
rs1480203447 173 dbSNP
rs183379807 189 dbSNP
rs981246904 199 dbSNP
rs1427611027 208 dbSNP
rs527602931 209 dbSNP
rs934535802 214 dbSNP
rs1021457936 217 dbSNP
rs1343331864 222 dbSNP
rs574380456 223 dbSNP
rs1298533934 229 dbSNP
rs1006960600 238 dbSNP
rs560098819 243 dbSNP
rs932615813 255 dbSNP
rs1297496780 259 dbSNP
rs17023581 276 dbSNP
rs1404289260 277 dbSNP
rs1170247914 280 dbSNP
rs1465138209 286 dbSNP
rs1423859942 295 dbSNP
rs1479000727 295 dbSNP
rs33965102 295 dbSNP
rs397827284 295 dbSNP
rs1261564808 301 dbSNP
rs79915975 306 dbSNP
rs891160693 306 dbSNP
rs1443448316 307 dbSNP
rs1284797814 308 dbSNP
rs772354639 312 dbSNP
rs1222681881 316 dbSNP
rs972447767 318 dbSNP
rs541754789 326 dbSNP
rs1219459684 329 dbSNP
rs1316297520 335 dbSNP
rs1287114824 338 dbSNP
rs1490287692 350 dbSNP
rs1448515925 352 dbSNP
rs568698457 354 dbSNP
rs561001317 355 dbSNP
rs909454815 360 dbSNP
rs28676674 363 dbSNP
rs1463674908 364 dbSNP
rs1422499220 365 dbSNP
rs959612918 369 dbSNP
rs1044774617 379 dbSNP
rs1370680340 379 dbSNP
rs1186117692 386 dbSNP
rs1460922837 388 dbSNP
rs1238794944 394 dbSNP
rs928683623 398 dbSNP
rs938697194 406 dbSNP
rs1405919201 418 dbSNP
rs1053111308 420 dbSNP
rs1257706090 429 dbSNP
rs1228646490 444 dbSNP
rs891883624 446 dbSNP
rs1358267142 454 dbSNP
rs1282346377 458 dbSNP
rs1244063374 460 dbSNP
rs1377560723 460 dbSNP
rs147874653 470 dbSNP
rs1443975419 472 dbSNP
rs1399050832 474 dbSNP
rs1022628003 476 dbSNP
rs1323860519 476 dbSNP
rs552911200 478 dbSNP
rs1161828573 482 dbSNP
rs1444497306 485 dbSNP
rs1381504149 486 dbSNP
rs141450214 495 dbSNP
rs763554826 513 dbSNP
rs889699880 514 dbSNP
rs1232500602 517 dbSNP
rs554536520 519 dbSNP
rs1019962435 524 dbSNP
rs866023066 525 dbSNP
rs1287390412 531 dbSNP
rs1277215698 532 dbSNP
rs1354278045 533 dbSNP
rs754183257 535 dbSNP
rs993835879 536 dbSNP
rs1025361534 540 dbSNP
rs952473324 541 dbSNP
rs984952677 548 dbSNP
rs374669898 550 dbSNP
rs1359423279 552 dbSNP
rs932563138 557 dbSNP
rs1361701579 558 dbSNP
rs909405237 558 dbSNP
rs970704546 559 dbSNP
rs1161030216 561 dbSNP
rs1129239 563 dbSNP
rs551652377 564 dbSNP
rs1417926578 567 dbSNP
rs980353412 568 dbSNP
rs143579472 569 dbSNP
rs938659302 580 dbSNP
rs762343126 581 dbSNP
rs1488522216 587 dbSNP
rs1231184986 591 dbSNP
rs1214441130 597 dbSNP
rs913312026 606 dbSNP
rs765934672 608 dbSNP
rs1042854008 610 dbSNP
rs186661068 611 dbSNP
rs996041789 612 dbSNP
rs1273923714 618 dbSNP
rs1048589586 619 dbSNP
rs1442744727 628 dbSNP
rs1300582952 630 dbSNP
rs879163681 637 dbSNP
rs895348659 653 dbSNP
rs556185435 654 dbSNP
rs576059654 671 dbSNP
rs901093615 675 dbSNP
rs1002555319 684 dbSNP
rs971027507 684 dbSNP
rs993824106 685 dbSNP
rs1264974625 687 dbSNP
rs1191248368 690 dbSNP
rs1031803062 691 dbSNP
rs1238012109 692 dbSNP
rs1408949390 695 dbSNP
rs955817527 707 dbSNP
rs1440249123 708 dbSNP
rs773832043 718 dbSNP
rs1262111926 719 dbSNP
rs1361825300 724 dbSNP
rs190919721 724 dbSNP
rs572453421 724 dbSNP
rs1326449904 727 dbSNP
rs1005336302 728 dbSNP
rs914393264 731 dbSNP
rs1357566281 733 dbSNP
rs1446857365 741 dbSNP
rs1336163561 745 dbSNP
rs545160408 751 dbSNP
rs1466282142 758 dbSNP
rs779135243 759 dbSNP
rs1168218296 765 dbSNP
rs1426074787 765 dbSNP
rs953904887 779 dbSNP
rs1414419766 795 dbSNP
rs1183591825 797 dbSNP
rs1481988794 799 dbSNP
rs1241914729 800 dbSNP
rs1198743172 807 dbSNP
rs1335547333 808 dbSNP
rs1255794877 813 dbSNP
rs748177274 816 dbSNP
rs912495697 819 dbSNP
rs1286263652 832 dbSNP
rs758460923 838 dbSNP
rs1357507028 841 dbSNP
rs1214420344 847 dbSNP
rs944004007 849 dbSNP
rs1401928565 854 dbSNP
rs1271126564 856 dbSNP
rs1459295134 859 dbSNP
rs1314405321 863 dbSNP
rs1199313093 880 dbSNP
rs1242640323 883 dbSNP
rs1459886622 884 dbSNP
rs1402683919 885 dbSNP
rs1447648209 885 dbSNP
rs972763902 885 dbSNP
rs1189548920 886 dbSNP
rs970230187 891 dbSNP
rs918620866 892 dbSNP
rs1350326356 893 dbSNP
rs1474956941 895 dbSNP
rs980682554 901 dbSNP
rs1384558883 902 dbSNP
rs931405573 902 dbSNP
rs1178675528 906 dbSNP
rs1048537209 910 dbSNP
rs1235962828 912 dbSNP
rs533739804 915 dbSNP
rs1425289020 916 dbSNP
rs1488605595 917 dbSNP
rs1266341249 920 dbSNP
rs1224262912 936 dbSNP
rs895296191 941 dbSNP
rs1291738772 943 dbSNP
rs759270283 947 dbSNP
rs1465847733 952 dbSNP
rs1046654521 956 dbSNP
rs948220235 956 dbSNP
rs558489523 958 dbSNP
rs1035912088 961 dbSNP
rs1394735339 964 dbSNP
rs1295021387 965 dbSNP
rs1002913003 967 dbSNP
rs1422548676 967 dbSNP
rs1336717901 973 dbSNP
rs960314823 976 dbSNP
rs1430429574 977 dbSNP
rs1031328100 984 dbSNP
rs1420979776 984 dbSNP
rs988769968 989 dbSNP
rs913259827 992 dbSNP
rs1180485897 997 dbSNP
rs1433356567 1009 dbSNP
rs183181161 1011 dbSNP
rs774034717 1011 dbSNP
rs767366065 1022 dbSNP
rs527502856 1030 dbSNP
rs978844574 1031 dbSNP
rs953854558 1043 dbSNP
rs1356476483 1053 dbSNP
rs985270459 1055 dbSNP
rs1019452836 1060 dbSNP
rs1312954100 1063 dbSNP
rs1342967032 1085 dbSNP
rs1202317275 1086 dbSNP
rs552213251 1086 dbSNP
rs1256748139 1087 dbSNP
rs1344711181 1088 dbSNP
rs965323076 1088 dbSNP
rs540903909 1096 dbSNP
rs781009493 1096 dbSNP
rs918581260 1102 dbSNP
rs911297976 1106 dbSNP
rs2718447 1108 dbSNP
rs984179524 1111 dbSNP
rs528561076 1112 dbSNP
rs1428952874 1114 dbSNP
rs1194869624 1115 dbSNP
rs1041308551 1118 dbSNP
rs1477912486 1128 dbSNP
rs1483649275 1129 dbSNP
rs916679821 1132 dbSNP
rs901086847 1137 dbSNP
rs929900165 1143 dbSNP
rs1278550325 1151 dbSNP
rs769616202 1154 dbSNP
rs935585706 1161 dbSNP
rs1046750185 1171 dbSNP
rs1317611049 1174 dbSNP
rs1396091268 1175 dbSNP
rs888085757 1180 dbSNP
rs1334131648 1184 dbSNP
rs1403810126 1184 dbSNP
rs1403490710 1188 dbSNP
rs1423929927 1196 dbSNP
rs1171784669 1197 dbSNP
rs74673419 1201 dbSNP
rs891437649 1201 dbSNP
rs188156530 1203 dbSNP
rs1461007494 1205 dbSNP
rs1258988091 1206 dbSNP
rs1200277142 1207 dbSNP
rs748996239 1207 dbSNP
rs904948694 1209 dbSNP
rs1001705919 1211 dbSNP
rs1006635843 1212 dbSNP
rs1312226760 1213 dbSNP
rs1400535181 1227 dbSNP
rs1451319318 1227 dbSNP
rs1400768061 1229 dbSNP
rs1333011504 1231 dbSNP
rs1411990038 1233 dbSNP
rs1019434448 1250 dbSNP
rs1329625798 1252 dbSNP
rs1235476593 1253 dbSNP
rs542663140 1255 dbSNP
rs1036309995 1257 dbSNP
rs1181793106 1258 dbSNP
rs1444134596 1261 dbSNP
rs1239004568 1262 dbSNP
rs148040019 1266 dbSNP
rs1436298688 1283 dbSNP
rs1271955647 1287 dbSNP
rs1210239069 1289 dbSNP
rs1358335816 1289 dbSNP
rs972655853 1291 dbSNP
rs1349809866 1292 dbSNP
rs1025998917 1296 dbSNP
rs952661018 1305 dbSNP
rs1439495741 1307 dbSNP
rs989052524 1311 dbSNP
rs531732181 1315 dbSNP
rs568099165 1317 dbSNP
rs984129004 1317 dbSNP
rs551914221 1319 dbSNP
rs536135295 1324 dbSNP
rs1488493433 1327 dbSNP
rs1424091725 1328 dbSNP
rs536354734 1338 dbSNP
rs1266303693 1339 dbSNP
rs968649177 1359 dbSNP
rs1468754103 1360 dbSNP
rs1434582392 1363 dbSNP
rs979176403 1371 dbSNP
rs1199272155 1379 dbSNP
rs1490794658 1379 dbSNP
rs911300188 1401 dbSNP
rs942818911 1406 dbSNP
rs565459811 1409 dbSNP
rs1221749081 1411 dbSNP
rs976593913 1415 dbSNP
rs1354339660 1425 dbSNP
rs1198899136 1437 dbSNP
rs527937792 1446 dbSNP
rs1221604715 1450 dbSNP
rs1362729535 1451 dbSNP
rs1349460656 1453 dbSNP
rs1275122926 1454 dbSNP
rs969457320 1463 dbSNP
rs748726787 1471 dbSNP
rs755798601 1471 dbSNP
rs1301679680 1486 dbSNP
rs548102622 1496 dbSNP
rs1361762437 1515 dbSNP
rs922457679 1519 dbSNP
rs1363080710 1525 dbSNP
rs1407509645 1532 dbSNP
rs193086766 1534 dbSNP
rs929809861 1535 dbSNP
rs1426863561 1537 dbSNP
rs375813154 1541 dbSNP
rs1246895809 1546 dbSNP
rs536198480 1560 dbSNP
rs1213003422 1566 dbSNP
rs537915071 1572 dbSNP
rs548131344 1573 dbSNP
rs1278885386 1580 dbSNP
rs1045165744 1581 dbSNP
rs915489592 1583 dbSNP
rs947017100 1585 dbSNP
rs1223314629 1603 dbSNP
rs1341648573 1607 dbSNP
rs904940799 1613 dbSNP
rs1272483845 1624 dbSNP
rs1042703070 1631 dbSNP
rs879078259 1645 dbSNP
rs1388767488 1656 dbSNP
rs1003729684 1667 dbSNP
rs1335254456 1668 dbSNP
rs1057288085 1669 dbSNP
rs1006580590 1672 dbSNP
rs1175401607 1673 dbSNP
rs1238150569 1684 dbSNP
rs1041214643 1686 dbSNP
rs549534858 1694 dbSNP
rs1010361750 1706 dbSNP
rs1221416494 1713 dbSNP
rs566244104 1714 dbSNP
rs141717815 1721 dbSNP
rs538339482 1723 dbSNP
rs539655428 1727 dbSNP
rs968974484 1735 dbSNP
rs1005510884 1740 dbSNP
rs1249128363 1765 dbSNP
rs1298374891 1766 dbSNP
rs1213260362 1776 dbSNP
rs1456065853 1777 dbSNP
rs1023632203 1782 dbSNP
rs1382677633 1789 dbSNP
rs761253368 1800 dbSNP
rs79106867 1803 dbSNP
rs1018715111 1804 dbSNP
rs1367102980 1810 dbSNP
rs964146972 1820 dbSNP
rs977212197 1822 dbSNP
rs1465942135 1837 dbSNP
rs111342507 1841 dbSNP
rs1168075978 1844 dbSNP
rs1409249407 1859 dbSNP
rs1294338907 1860 dbSNP
rs371977887 1872 dbSNP
rs1184872383 1878 dbSNP
rs1442294027 1889 dbSNP
rs951155622 1892 dbSNP
rs982620775 1894 dbSNP
rs1242135353 1902 dbSNP
rs915453189 1904 dbSNP
rs988719969 1904 dbSNP
rs909793377 1912 dbSNP
rs1253389676 1913 dbSNP
rs1202897930 1915 dbSNP
rs946964510 1926 dbSNP
rs1293198762 1932 dbSNP
rs1248241070 1934 dbSNP
rs868226096 1935 dbSNP
rs1333495245 1936 dbSNP
rs1377494155 1938 dbSNP
rs1314469115 1941 dbSNP
rs1392120033 1944 dbSNP
rs746029956 1946 dbSNP
rs941316808 1948 dbSNP
rs1245174354 1953 dbSNP
rs2718448 1969 dbSNP
rs1441260396 1980 dbSNP
rs926312869 1985 dbSNP
rs1350376665 1993 dbSNP
rs1165457692 1994 dbSNP
rs939044928 1996 dbSNP
rs558382779 1998 dbSNP
rs1384011455 1999 dbSNP
rs1056100260 2020 dbSNP
rs554400683 2032 dbSNP
rs1420455651 2034 dbSNP
rs892222334 2036 dbSNP
rs1175822686 2037 dbSNP
rs1315731803 2046 dbSNP
rs114821776 2049 dbSNP
rs184191217 2063 dbSNP
rs1238277158 2065 dbSNP
rs1357941977 2070 dbSNP
rs1041904722 2080 dbSNP
rs1239897573 2093 dbSNP
rs904766073 2095 dbSNP
rs187365044 2100 dbSNP
rs1000883621 2110 dbSNP
rs1018540639 2113 dbSNP
rs1222984163 2114 dbSNP
rs993975346 2116 dbSNP
rs192396319 2117 dbSNP
rs1402965753 2118 dbSNP
rs1364912952 2119 dbSNP
rs1288909090 2127 dbSNP
rs1254774535 2128 dbSNP
rs1361688373 2135 dbSNP
rs998200875 2142 dbSNP
rs1433414579 2144 dbSNP
rs1005455218 2146 dbSNP
rs1029718572 2149 dbSNP
rs1202068366 2161 dbSNP
rs1023575072 2167 dbSNP
rs1268851650 2167 dbSNP
rs951476856 2167 dbSNP
rs1205769811 2172 dbSNP
rs1165995137 2173 dbSNP
rs184767815 2185 dbSNP
rs1464288262 2189 dbSNP
rs189403023 2194 dbSNP
rs1401138932 2210 dbSNP
rs957004486 2218 dbSNP
rs1301006480 2220 dbSNP
rs1221497582 2221 dbSNP
rs1344775747 2228 dbSNP
rs988280170 2229 dbSNP
rs1383405037 2230 dbSNP
rs1382054417 2241 dbSNP
rs527848827 2244 dbSNP
rs1022409141 2246 dbSNP
rs79714615 2248 dbSNP
rs1407881165 2260 dbSNP
rs561537980 2261 dbSNP
rs981068828 2269 dbSNP
rs576455746 2270 dbSNP
rs926561076 2274 dbSNP
rs1178992600 2276 dbSNP
rs1294631505 2277 dbSNP
rs938979404 2286 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048188. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_ptb_knockdown ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucGGUCGGUUGAGU--GUC--ACGUCu 5'
            |: ||:   |||  |||  || || 
Target 5' guCUUGCUCUGUCACCCAGGCUGGAG- 3'
10 - 35
2
miRNA  3' ucggucgguugaGUGUCAcgucu 5'
                      || |||     
Target 5' -------acagaCAGAGUcuugc 3'
1 - 16
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Cardiac Tissues
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM2202478. RNA binding protein: AGO2. Condition:S3_LV_36yo_Male_AGO2_bound_RNA HITS-CLIP data was present in GSM2202481. RNA binding protein: AGO2. Condition:S6_LV_61yo_Male_AGO2_bound_RNA ...

- Spengler RM; Zhang X; Cheng C; McLendon JM; et al., 2016, Nucleic acids research.

Article - Spengler RM; Zhang X; Cheng C; McLendon JM; et al.
- Nucleic acids research, 2016
MicroRNAs (miRs) have emerged as key biological effectors in human health and disease. These small noncoding RNAs are incorporated into Argonaute (Ago) proteins, where they direct post-transcriptional gene silencing via base-pairing with target transcripts. Although miRs have become intriguing biological entities and attractive therapeutic targets, the translational impacts of miR research remain limited by a paucity of empirical miR targeting data, particularly in human primary tissues. Here, to improve our understanding of the diverse roles miRs play in cardiovascular function and disease, we applied high-throughput methods to globally profile miR:target interactions in human heart tissues. We deciphered Ago2:RNA interactions using crosslinking immunoprecipitation coupled with high-throughput sequencing (HITS-CLIP) to generate the first transcriptome-wide map of miR targeting events in human myocardium, detecting 4000 cardiac Ago2 binding sites across >2200 target transcripts. Our initial exploration of this interactome revealed an abundance of miR target sites in gene coding regions, including several sites pointing to new miR-29 functions in regulating cardiomyocyte calcium, growth and metabolism. Also, we uncovered several clinically-relevant interactions involving common genetic variants that alter miR targeting events in cardiomyopathy-associated genes. Overall, these data provide a critical resource for bolstering translational miR research in heart, and likely beyond.
LinkOut: [PMID: 27418678]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_018241 | 3UTR | GUCACCCAGGCUGGAGUGCAGUGGCGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_018241 | 3UTR | CUUGCUCUGUCACCCAGGCUGGAGUGCAGUGGCGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_018241 | 3UTR | CACCCAGGCUGGAGUGCAGUGGCGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_018241 | 3UTR | CUCUGUCACCCAGGCUGGAGUGCAGUGGCGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_018241 | 3UTR | UCUGUCACCCAGGCUGGAGUGCAGUGGCGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1048188
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_ptb_knockdown
Location of target site ENST00000296582.3 | 3UTR | ACAGACAGAGUCUUGCUCUGUCACCCAGGCUGGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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