pre-miRNA Information | |
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pre-miRNA | hsa-mir-548t |
Genomic Coordinates | chr4: 173268160 - 173268233 |
Description | Homo sapiens miR-548t stem-loop |
Comment | None |
RNA Secondary Structure | ![]() |
Mature miRNA Information | ||||||||||||||||||||||||||||||||||||
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Mature miRNA | hsa-miR-548t-3p | |||||||||||||||||||||||||||||||||||
Sequence | 46| AAAAACCACAAUUACUUUUGCACCA |70 | |||||||||||||||||||||||||||||||||||
Evidence | Not_experimental | |||||||||||||||||||||||||||||||||||
Experiments | ||||||||||||||||||||||||||||||||||||
Editing Events in miRNAs |
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SNPs in miRNA |
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Putative Targets |
Gene Information | |||||||||||||||||||||
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Gene Symbol | SNX2 | ||||||||||||||||||||
Synonyms | TRG-9 | ||||||||||||||||||||
Description | sorting nexin 2 | ||||||||||||||||||||
Transcript | NM_003100 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on SNX2 | |||||||||||||||||||||
3'UTR of SNX2 (miRNA target sites are highlighted) |
>SNX2|NM_003100|3'UTR 1 CAATAAGATTGTTGCCGTTAAGAAGACCTTGGATGTTGTTCCAGTTATGCTGGATTCCACAGTGAAATCATTTAAAACCA 81 TCTAAATAAACCACTATATATTTTATGAATTACATGTGGTTTTATATACACACACACACACACACACACACACACACACA 161 CACTCTGACATTTTATTACAAGCTGCATGTCCTGACCCTCTTTGAATTAAGTGGACTGTGGCATGACATTCTGCAATACT 241 TTGCTGAATTGAACACTATTGTGTCTTAAATACTTGCACTAAATAGTGCACTGCAAGACCAGAAAATTTTACAATATTTT 321 TTCTTTACAATATGTTCTGTAGTATGTTTACCCTCTTTATGAAGTGAATTACCAATGCTTTGAATAATGTTCACTTATAC 401 ATTCCTGTACAGAAATTACGATTTTGTGATTACAGTAATAAAATGATATTCCTTGTGAAATATTAGTAACAAATTATTTG 481 GGTATTTAAACATTAGGAATCTTTTCAAAGCATTTTTAATAGGAAGAAATTTTTCTTCTAGATGTATATAGGTGATGCCA 561 TGATTCCTTAATTATTTTAATTGACAAAGCTGAACTCATTAAATGACTAAATGAAGCTTAAGTTTTCTTATGAAACCATC 641 ATAAATCAAAGAACATTTGACTCTTGATTGTCTTGGGTAAAGAAGAGAATAATTGTCTTTGCTTGTTTTTAACCATCTCT 721 ATTACAAGTGCCCAATTTAAGAATTAGGAAAAAAATGTATTTATATACTTTTACAAGTCCCATGGATTTTGTTCATCTTC 801 TCGTTATCTTCAGAATCTCGTACTTTGCATATATTTAATTTATTCTTGTCTTTTGGTTTTTTTTCTTTTAAACTAAAAGT 881 ATATCATCTGTGCTCACAGTTGACAAGGAATGGTACCATGTTAAAATATACCATGATTTGATGAATAAGCAAGCACAACA 961 CAAAGCAAATTTGAAGTAAACTGAAATTTAGTTTGCCTTGGGCAATGTTTTTACCCATTCTGTATGCTACTTAGACAGCT 1041 GTTATCTAATCCTTAATGCTGATGAAAATTTAAGTCATGGCTGGGTGTGGTGGCTCACGCCTGTAATCCTAGCACTTTGG 1121 GAGGCTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCAAGACTAGCCTGGCCAACATGGTAAAACTCCATCTCTACTAA 1201 AAATACAAAAATTCGCCTGGTGTGGTGGGGTGTGCTTGTGGTCCCAGCTACTTGGGAGGCTGAGGCACAAGAATCGCTTG 1281 AACCAGGAAGGTGGAGGTTGCAGTGAGCCAAGATCATGCCGTTGCACGCCAGCCTAGGCAACAAAAGCAAAACTCCATCT 1361 CAAAAAAAAAAAAAAAAAAAAAAAAGATGACTGGTGTCAGAGCTATTTTTGTTTTTTAAAAAATATTCTTACAAACACCC 1441 CTCTTCTTGAGCTTAACCACCACATATCCCTTCCATAGGAACAAGATATGGTATGTGTAACTAAGTCATCTCTAGTGAGT 1521 CACTGGATACAATTTATATATCGAAGTATCCTTAGCATGTGTTTGCTTCTGCTTTAGTTGAAATGTTAAGCCTTCTATAG 1601 GTGTTATTCATATTTATACTCCCACAGCCCAGAAGAGTGGCTGATACATAATAGGTTAATAATAAGGGCTTGATGGGCCA 1681 GGCACAGTGACTCACATGCCTGTAGTCCCAGCTTCTTGGGAGGCTGAGGCAGGAGGATCTCTTGAGCCCAGGAGTTTGAG 1761 GCTATAGTACACTATGATCGTGCCTGTGAATACCCACTAACCTACAGCCAGCCTGGACAACATAGTGAGACCCTGTCTCT 1841 AAAAAAAATGAAGACTTGATGAGTTGAACAGGGAAAACAAAAGTTTGCTCTTCTAAAAAGAAACTGAAGCAGAAATAGTA 1921 CAATCATCTTTTGTTGCTTCTGGGAATACTTTTCAGAAACGAATAATTCATAGTAATATATATCAGATGCTATCTTGTTG 2001 CTCCATTAATATTGAGCAAAAGATAGGCTTACCAAGAATAGTTTCACTATAATGATGTCCTAGTGTTATATCCACAGGTA 2081 TATTACTTAACAAAGGTATAGTTTACACATAGGATGGTTATTCAAGTTATTATTAAAATCTTCCATTCAGATGTGGTACA 2161 TTAGAATATTCAGTACCTCCAAGTAAAATAATAAATATTTTCAGCCTTGATTAAACTCTAGACTCCCTTCCAGACTTCCA 2241 TTTCCCTTGCCCACATTTACTAAAAGATGAGTGTGCTGGAAATTTCAAGTATTATATGAGCCTCTGATACCTACCAGTAT 2321 TTAAACAGGATTTAATTATTTCAACACTTCACCCATCAATCTTCACTTCTCCTGTTCAGATAAAAATGCTTTCATCCCAA 2401 ATAAGTAAAACAAGAACATTAATAGTGCTAATAATATAATCTTTTCATTGGATAGGTCTGAGTTTAGCGTTTGTTTGTTT 2481 TCTTAATGAGATCAAAAGTTAAAGACCAAGGCAGCAAAATATTGTGAAACAAGCTGAACTTGGGATCAGCATACATTTGT 2561 TCAGTCTTGTTTCATTTAGTATGACTTTGGGCATATCACTTAAATCTCTTATCTATAAAACAAGTACATAAAAGTCTTGA 2641 TTCCTGAAGTGCCTTTCTACTTTAAAATATTTTGTTTAAAATATCAAACTTCAATATAAATATGTTGGAAAACAATTCTA 2721 ATCAAAGAACTTCTATTAAGTAAAACAAGACAAAATGTGTGTAAAAATATGCCTAACACATAGATTTCCTTGATTGTATT 2801 TTCTACTGAACTATTTTCAAGTATTCAGCTTTATACTAATATATTAATCTCAAAATACCTTTGTTTCATTGTTGCTACTC 2881 CTTAAACTTTTTTCTTTATTATCTAGATCTAGTAAAGTTTTCTGCATTCATTGTATTAATGTTGGTTCAAAAGTAATTGC 2961 GTCCTTTGTCGTTATATAAATTGTTTTATAAATGGCTTTAACTATGACATAAGCCTTTTAACATAATCAGCTTTCTTTAA 3041 AGGAGGAAGTCAGATGAGTAGAGAAGGAAAGTTATATTCCTTTACAAATGCTCTTAATTTTAATGTCTTAAGGGAATTAT 3121 AGAGACTTCCATTATTCTGCCTTAAATAAGGGATGTTACTTCAGTTTTCTTGTCATGGCTCCCTGCATGGGCAGTCATGT 3201 TAACAAGAGTCAGGGAGATAGCAGATATTCCATAATAGTGACTGCAGATAGGCCAGTCAAAGTCATTTTGTTTTAAAGGA 3281 AGGGAGGTTGCTGGTAGTTAGGTGGGAAAATAACACCTGTGAAAAGGAAGTCCAAGTCACTGGCTCAGGGACTTTGGAGG 3361 CATTTTCATATCATATTCACTAGTCAAGAAACGTGTAGATTATATGTGTGAGTGACATAGTCTGTTTCAAAGTATTAGAA 3441 AAGAGACAATAGAATCACCCACCCTCCCTTCGACACACACTTCCTTATGTAAAATCAGAATCAAATAATTATCATTCCTA 3521 ACCCTCACAGTGAAGGATTTGGTTTCATGTAACAATGAAAGTAGATAATGGGTCAGACATGGAAATAGCAATAAAAGGGA 3601 ATTACAACAAGATAAATGTGAGTAATAGTTCATTTTCCTGCATTTTTGATGAGGGCCATGAAGATAGGTCATGGTAATCT 3681 ATGGAGAAGGTCCTTAAGAGCATAGAACAATATAAATATAATATGGGCCATATATATAATTTTAAAATTTTCTACAGCCA 3761 AATGTTAAAAAGTAAAAAACAATTTTAATAATCCAGTAGCTCCAAAATATTATTTTAATATGTAATCCAATATATTGAAG 3841 TTATAAGATATTTTACATTCTTTTTTTGATATCTGATGTATATTTTACACTTTCATCACATCTCCATTCAGACCGGCTAC 3921 AATTTGATCAGTTGTCACATGTGGATGACTAGTGGCTATGATAATGGACAGCATAGGTTTAGACAATGCCTATTCAACTA 4001 TTCAACTTGTTTTACATTTATAAATCTCAAAATGCCTTTATTTCATTGTTGGTACTCTTTTTTATTACCCAGATACAATA 4081 AAGTTTTCCAAGTTTCATTGTACACATGAAATGAGTTTACTGTGGAAATGAAAATGCAGAGTAAGTCCAACAGCTAGTTT 4161 ATCATCCTGAACCCAGTGAAGAAATCAAAGCTGAATAAAAGCGACTCCTAGTTGTTACTCTCAAGGGCAGGTATAATTTA 4241 TGTGCAAGACTTTGTAGCATAATGTTTTGCAAGTAGTGGATGTTCAATATCTACAATAAATGAATTGTAGTACTATATTG 4321 CTTGAAGGAAGTTTATAACCTGTCTAGAACAACTTTCTCAATTTTACAACTAAACTAGGAGATCCAGGGCTTAAATCATG 4401 ATTGAACTGATTATTCCTGTTAAATTTATGTGTGAACCATATGTGAACATTCTTTGAAAATGTATGATAAGCATTTCAAG 4481 ATTTCTGTTTTAATTATTAACATTTAGAATTCTAGGAAATCTTTTGGGATACAGAGAACTTATTTCTTCCAACTGTTGCT 4561 TCAGACGCTGATAAGATTGTAGAAGATAGGGAAGCTGTAGTTTACTATCTAGTTTTTTAATGCACATGAAGTAATTTAAA 4641 ATGCTCTTCTTCCTTTCTTGTCACATACTTTTAAAAAATTCTCTAAAGATTGAATAATTTTAAGTATTTCTTAACTGGGC 4721 AAAATGGAAACTTTGTAACTGAAGCCAGTCAAGGTGAATACACAGAAAATCATTTTCTTATTAAGGTCAGTTAATGGGAT 4801 AAACCGTTTTAAGAGAGTTGAGAAAAAATAAAGTTCTATTTTAAATTTATACATGTAACTTTAATAAAAACTAAGTCAGA 4881 CAAAATTTAAC Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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DRVs in gene 3'UTRs | |||||||||||||||||||||
SNPs in gene 3'UTRs |
Experimental Support 1 for Functional miRNA-Target Interaction | |
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miRNA:Target | ---- |
Validation Method |
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Conditions | HEK293 |
Disease | 6643.0 |
Location of target site | 3'UTR |
Tools used in this research | TargetScan , miRTarCLIP , Piranha |
Original Description (Extracted from the article) |
...
"HITS-CLIP data was present in GSM714642. RNA binding protein: AGO2. Condition:completeT1
... - Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods. |
Article |
- Kishore S; Jaskiewicz L; Burger L; Hausser et al. - Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
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Experimental Support 2 for Functional miRNA-Target Interaction | |
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miRNA:Target | ---- |
Validation Method |
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Conditions | Hela |
Location of target site | 3'UTR |
Tools used in this research | TargetScan , miRTarCLIP , Piranha |
Original Description (Extracted from the article) |
...
HITS-CLIP data was present in GSM1048188. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_ptb_knockdown
... - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell. |
Article |
- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al. - Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
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Experimental Support 3 for Functional miRNA-Target Interaction | |
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miRNA:Target | ---- |
Validation Method |
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Conditions | Cardiac Tissues |
Location of target site | 3'UTR |
Tools used in this research | TargetScan , miRTarCLIP , Piranha |
Original Description (Extracted from the article) |
...
HITS-CLIP data was present in GSM2202477. RNA binding protein: AGO2. Condition:S2_LV_25yo_Male_AGO2_bound_RNA
HITS-CLIP data was present in GSM2202478. RNA binding protein: AGO2. Condition:S3_LV_36yo_Male_AGO2_bound_RNA
... - Spengler RM; Zhang X; Cheng C; McLendon JM; et al., 2016, Nucleic acids research. |
Article |
Elucidation of transcriptome-wide microRNA binding sites in human cardiac tissues by Ago2 HITS-CLIP.
- Spengler RM; Zhang X; Cheng C; McLendon JM; et al.- Nucleic acids research, 2016
MicroRNAs (miRs) have emerged as key biological effectors in human health and disease. These small noncoding RNAs are incorporated into Argonaute (Ago) proteins, where they direct post-transcriptional gene silencing via base-pairing with target transcripts. Although miRs have become intriguing biological entities and attractive therapeutic targets, the translational impacts of miR research remain limited by a paucity of empirical miR targeting data, particularly in human primary tissues. Here, to improve our understanding of the diverse roles miRs play in cardiovascular function and disease, we applied high-throughput methods to globally profile miR:target interactions in human heart tissues. We deciphered Ago2:RNA interactions using crosslinking immunoprecipitation coupled with high-throughput sequencing (HITS-CLIP) to generate the first transcriptome-wide map of miR targeting events in human myocardium, detecting 4000 cardiac Ago2 binding sites across >2200 target transcripts. Our initial exploration of this interactome revealed an abundance of miR target sites in gene coding regions, including several sites pointing to new miR-29 functions in regulating cardiomyocyte calcium, growth and metabolism. Also, we uncovered several clinically-relevant interactions involving common genetic variants that alter miR targeting events in cardiomyopathy-associated genes. Overall, these data provide a critical resource for bolstering translational miR research in heart, and likely beyond.
LinkOut: [PMID: 27418678]
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CLIP-seq Support 1 for dataset GSM714642 | |
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Method / RBP | HITS-CLIP / AGO2 |
Cell line / Condition | HEK293 / completeT1, repA |
Location of target site | ENST00000379516.2 | 3UTR | UUAUAUACACACACA |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Article / Accession Series | PMID: 21572407 / GSE28865 |
CLIP-seq Viewer | Link |
CLIP-seq Support 2 for dataset GSM1048188 | |
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Method / RBP | HITS-CLIP / AGO2 |
Cell line / Condition | Hela / Hela_AGO2_CLIP_ptb_knockdown |
Location of target site | ENST00000379516.2 | 3UTR | GGUUUUAUAUACACACACACAC |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Article / Accession Series | PMID: 23313552 / GSE42701 |
CLIP-seq Viewer | Link |
MiRNA-Target Expression Profile | |||||||
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MiRNA-Target Expression Profile (TCGA) | |||||||
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168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID![]() |
Target | Description | Validation methods |
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Strong evidence | Less strong evidence | |||||||||||
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MIRT059365 | ANP32E | acidic nuclear phosphoprotein 32 family member E | ![]() |
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2 | 2 | ||||||
MIRT072839 | ARIH1 | ariadne RBR E3 ubiquitin protein ligase 1 | ![]() |
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2 | 6 | ||||||
MIRT076945 | PCGF2 | polycomb group ring finger 2 | ![]() |
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2 | 6 | ||||||
MIRT083941 | TFAP2C | transcription factor AP-2 gamma | ![]() |
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2 | 2 | ||||||
MIRT085401 | ETS2 | ETS proto-oncogene 2, transcription factor | ![]() |
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2 | 2 | ||||||
MIRT109790 | KLHL15 | kelch like family member 15 | ![]() |
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2 | 2 | ||||||
MIRT114046 | AKAP11 | A-kinase anchoring protein 11 | ![]() |
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2 | 10 | ||||||
MIRT130165 | TXNIP | thioredoxin interacting protein | ![]() |
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2 | 6 | ||||||
MIRT150013 | MIDN | midnolin | ![]() |
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2 | 2 | ||||||
MIRT181258 | ASH1L | ASH1 like histone lysine methyltransferase | ![]() |
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2 | 2 | ||||||
MIRT205594 | NCL | nucleolin | ![]() |
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2 | 2 | ||||||
MIRT222253 | ACTB | actin beta | ![]() |
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2 | 4 | ||||||
MIRT245653 | EIF5AL1 | eukaryotic translation initiation factor 5A-like 1 | ![]() |
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2 | 4 | ||||||
MIRT250947 | CDK5R1 | cyclin dependent kinase 5 regulatory subunit 1 | ![]() |
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2 | 4 | ||||||
MIRT252497 | NWD1 | NACHT and WD repeat domain containing 1 | ![]() |
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2 | 2 | ||||||
MIRT271990 | ARF1 | ADP ribosylation factor 1 | ![]() |
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2 | 4 | ||||||
MIRT280804 | RNF11 | ring finger protein 11 | ![]() |
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2 | 2 | ||||||
MIRT293803 | FEM1A | fem-1 homolog A | ![]() |
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2 | 2 | ||||||
MIRT318231 | RREB1 | ras responsive element binding protein 1 | ![]() |
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2 | 2 | ||||||
MIRT341455 | ATP6V0B | ATPase H+ transporting V0 subunit b | ![]() |
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2 | 2 | ||||||
MIRT347413 | CEBPG | CCAAT/enhancer binding protein gamma | ![]() |
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2 | 4 | ||||||
MIRT351860 | PLEKHA3 | pleckstrin homology domain containing A3 | ![]() |
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2 | 2 | ||||||
MIRT357983 | GRPEL2 | GrpE like 2, mitochondrial | ![]() |
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2 | 2 | ||||||
MIRT377094 | PPP1CB | protein phosphatase 1 catalytic subunit beta | ![]() |
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2 | 2 | ||||||
MIRT407303 | IGFBP5 | insulin like growth factor binding protein 5 | ![]() |
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2 | 2 | ||||||
MIRT441564 | LMOD3 | leiomodin 3 | ![]() |
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2 | 2 | ||||||
MIRT442364 | ZC3H12C | zinc finger CCCH-type containing 12C | ![]() |
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2 | 2 | ||||||
MIRT443228 | ARL5B | ADP ribosylation factor like GTPase 5B | ![]() |
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2 | 2 | ||||||
MIRT443404 | HMX3 | H6 family homeobox 3 | ![]() |
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2 | 2 | ||||||
MIRT446055 | NR5A2 | nuclear receptor subfamily 5 group A member 2 | ![]() |
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2 | 2 | ||||||
MIRT448277 | ZNF652 | zinc finger protein 652 | ![]() |
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2 | 2 | ||||||
MIRT450822 | KCNB1 | potassium voltage-gated channel subfamily B member 1 | ![]() |
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2 | 2 | ||||||
MIRT453016 | CCDC115 | coiled-coil domain containing 115 | ![]() |
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2 | 17 | ||||||
MIRT454463 | PPP2R2B | protein phosphatase 2 regulatory subunit Bbeta | ![]() |
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2 | 2 | ||||||
MIRT456360 | CITED2 | Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 | ![]() |
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2 | 2 | ||||||
MIRT460007 | DNALI1 | dynein axonemal light intermediate chain 1 | ![]() |
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2 | 2 | ||||||
MIRT463154 | ZNF385A | zinc finger protein 385A | ![]() |
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2 | 6 | ||||||
MIRT463766 | YPEL2 | yippee like 2 | ![]() |
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2 | 2 | ||||||
MIRT468310 | SFT2D2 | SFT2 domain containing 2 | ![]() |
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2 | 2 | ||||||
MIRT470668 | POLR2D | RNA polymerase II subunit D | ![]() |
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2 | 4 | ||||||
MIRT478517 | CTTN | cortactin | ![]() |
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2 | 2 | ||||||
MIRT480507 | C11orf57 | chromosome 11 open reading frame 57 | ![]() |
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2 | 2 | ||||||
MIRT484718 | INHBA | inhibin beta A subunit | ![]() |
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2 | 12 | ||||||
MIRT485494 | HMGN2 | high mobility group nucleosomal binding domain 2 | ![]() |
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2 | 2 | ||||||
MIRT487302 | SLC38A9 | solute carrier family 38 member 9 | ![]() |
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2 | 2 | ||||||
MIRT487771 | ANKEF1 | ankyrin repeat and EF-hand domain containing 1 | ![]() |
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2 | 16 | ||||||
MIRT491876 | YWHAZ | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta | ![]() |
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2 | 2 | ||||||
MIRT494304 | CEP120 | centrosomal protein 120 | ![]() |
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2 | 2 | ||||||
MIRT495396 | TRIM24 | tripartite motif containing 24 | ![]() |
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2 | 2 | ||||||
MIRT495646 | CDK1 | cyclin dependent kinase 1 | ![]() |
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2 | 2 | ||||||
MIRT496665 | TMEM237 | transmembrane protein 237 | ![]() |
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2 | 2 | ||||||
MIRT496837 | ZNF460 | zinc finger protein 460 | ![]() |
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2 | 2 | ||||||
MIRT498638 | CHD4 | chromodomain helicase DNA binding protein 4 | ![]() |
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2 | 10 | ||||||
MIRT503928 | FBXL13 | F-box and leucine rich repeat protein 13 | ![]() |
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2 | 4 | ||||||
MIRT506063 | PPP2R2A | protein phosphatase 2 regulatory subunit Balpha | ![]() |
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2 | 2 | ||||||
MIRT506582 | MIER3 | MIER family member 3 | ![]() |
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2 | 4 | ||||||
MIRT506606 | MAT2A | methionine adenosyltransferase 2A | ![]() |
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2 | 4 | ||||||
MIRT506844 | KIF23 | kinesin family member 23 | ![]() |
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2 | 6 | ||||||
MIRT508536 | RPP14 | ribonuclease P/MRP subunit p14 | ![]() |
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2 | 4 | ||||||
MIRT509669 | ZNF354B | zinc finger protein 354B | ![]() |
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2 | 10 | ||||||
MIRT511170 | MBNL3 | muscleblind like splicing regulator 3 | ![]() |
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2 | 6 | ||||||
MIRT512147 | COX6B1 | cytochrome c oxidase subunit 6B1 | ![]() |
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2 | 2 | ||||||
MIRT512831 | ID4 | inhibitor of DNA binding 4, HLH protein | ![]() |
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2 | 6 | ||||||
MIRT514558 | XRCC3 | X-ray repair cross complementing 3 | ![]() |
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2 | 4 | ||||||
MIRT515856 | AJAP1 | adherens junctions associated protein 1 | ![]() |
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2 | 4 | ||||||
MIRT521848 | PNISR | PNN interacting serine and arginine rich protein | ![]() |
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2 | 4 | ||||||
MIRT525364 | SYNM | synemin | ![]() |
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2 | 2 | ||||||
MIRT527120 | ARHGAP15 | Rho GTPase activating protein 15 | ![]() |
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2 | 2 | ||||||
MIRT527271 | FBLN2 | fibulin 2 | ![]() |
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2 | 2 | ||||||
MIRT527439 | COL4A3 | collagen type IV alpha 3 chain | ![]() |
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2 | 2 | ||||||
MIRT527658 | CD300E | CD300e molecule | ![]() |
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2 | 2 | ||||||
MIRT528334 | TBC1D22B | TBC1 domain family member 22B | ![]() |
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2 | 2 | ||||||
MIRT529033 | EXOC8 | exocyst complex component 8 | ![]() |
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2 | 2 | ||||||
MIRT529321 | PDE5A | phosphodiesterase 5A | ![]() |
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2 | 2 | ||||||
MIRT529677 | TRPV2 | transient receptor potential cation channel subfamily V member 2 | ![]() |
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2 | 2 | ||||||
MIRT529846 | SMTN | smoothelin | ![]() |
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2 | 2 | ||||||
MIRT530385 | ZNF431 | zinc finger protein 431 | ![]() |
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2 | 2 | ||||||
MIRT530913 | GPR85 | G protein-coupled receptor 85 | ![]() |
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2 | 2 | ||||||
MIRT531794 | KDR | kinase insert domain receptor | ![]() |
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2 | 2 | ||||||
MIRT532246 | KLF2 | Kruppel like factor 2 | ![]() |
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2 | 4 | ||||||
MIRT532658 | CBX7 | chromobox 7 | ![]() |
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2 | 2 | ||||||
MIRT533630 | TMX3 | thioredoxin related transmembrane protein 3 | ![]() |
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2 | 2 | ||||||
MIRT534811 | RAB33B | RAB33B, member RAS oncogene family | ![]() |
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2 | 2 | ||||||
MIRT534975 | PSD3 | pleckstrin and Sec7 domain containing 3 | ![]() |
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2 | 2 | ||||||
MIRT536588 | ITPKB | inositol-trisphosphate 3-kinase B | ![]() |
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2 | 2 | ||||||
MIRT536779 | HNRNPD | heterogeneous nuclear ribonucleoprotein D | ![]() |
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2 | 2 | ||||||
MIRT538764 | CABLES1 | Cdk5 and Abl enzyme substrate 1 | ![]() |
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2 | 2 | ||||||
MIRT539294 | ANGEL2 | angel homolog 2 | ![]() |
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2 | 2 | ||||||
MIRT539621 | SHISA9 | shisa family member 9 | ![]() |
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2 | 2 | ||||||
MIRT539651 | BUB1 | BUB1 mitotic checkpoint serine/threonine kinase | ![]() |
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2 | 2 | ||||||
MIRT540347 | OPHN1 | oligophrenin 1 | ![]() |
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2 | 2 | ||||||
MIRT540413 | PITPNC1 | phosphatidylinositol transfer protein, cytoplasmic 1 | ![]() |
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2 | 2 | ||||||
MIRT541396 | CDC27 | cell division cycle 27 | ![]() |
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2 | 2 | ||||||
MIRT542916 | HSBP1 | heat shock factor binding protein 1 | ![]() |
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2 | 2 | ||||||
MIRT544710 | EIF5A | eukaryotic translation initiation factor 5A | ![]() |
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2 | 4 | ||||||
MIRT544998 | MFF | mitochondrial fission factor | ![]() |
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2 | 4 | ||||||
MIRT553289 | TSPAN3 | tetraspanin 3 | ![]() |
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2 | 2 | ||||||
MIRT553455 | TNRC6C | trinucleotide repeat containing 6C | ![]() |
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2 | 2 | ||||||
MIRT553782 | TAF13 | TATA-box binding protein associated factor 13 | ![]() |
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2 | 2 | ||||||
MIRT554656 | ROBO1 | roundabout guidance receptor 1 | ![]() |
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2 | 2 | ||||||
MIRT555104 | PURB | purine rich element binding protein B | ![]() |
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2 | 2 | ||||||
MIRT557235 | HNRNPA1 | heterogeneous nuclear ribonucleoprotein A1 | ![]() |
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2 | 2 | ||||||
MIRT560861 | GAL3ST3 | galactose-3-O-sulfotransferase 3 | ![]() |
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2 | 2 | ||||||
MIRT561545 | SON | SON DNA binding protein | ![]() |
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2 | 2 | ||||||
MIRT561554 | SLMO2 | PRELI domain containing 3B | ![]() |
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2 | 2 | ||||||
MIRT563764 | ZNF678 | zinc finger protein 678 | ![]() |
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2 | 2 | ||||||
MIRT565653 | SIX4 | SIX homeobox 4 | ![]() |
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2 | 2 | ||||||
MIRT568080 | CELF2 | CUGBP Elav-like family member 2 | ![]() |
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2 | 2 | ||||||
MIRT568759 | MYBL1 | MYB proto-oncogene like 1 | ![]() |
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2 | 2 | ||||||
MIRT569078 | CADM2 | cell adhesion molecule 2 | ![]() |
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2 | 2 | ||||||
MIRT569509 | THYN1 | thymocyte nuclear protein 1 | ![]() |
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2 | 2 | ||||||
MIRT571268 | CDKN2AIP | CDKN2A interacting protein | ![]() |
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2 | 2 | ||||||
MIRT571809 | PHF19 | PHD finger protein 19 | ![]() |
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2 | 2 | ||||||
MIRT572554 | DKK3 | dickkopf WNT signaling pathway inhibitor 3 | ![]() |
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2 | 2 | ||||||
MIRT573782 | SLC24A4 | solute carrier family 24 member 4 | ![]() |
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2 | 4 | ||||||
MIRT576441 | Ccdc115 | coiled-coil domain containing 115 | ![]() |
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2 | 10 | ||||||
MIRT576712 | Slc30a3 | solute carrier family 30 (zinc transporter), member 3 | ![]() |
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2 | 3 | ||||||
MIRT608377 | PIWIL2 | piwi like RNA-mediated gene silencing 2 | ![]() |
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2 | 2 | ||||||
MIRT608484 | NKTR | natural killer cell triggering receptor | ![]() |
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2 | 6 | ||||||
MIRT610186 | FAM49A | family with sequence similarity 49 member A | ![]() |
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2 | 2 | ||||||
MIRT611631 | EDIL3 | EGF like repeats and discoidin domains 3 | ![]() |
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2 | 2 | ||||||
MIRT613534 | TRA2B | transformer 2 beta homolog | ![]() |
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2 | 2 | ||||||
MIRT616221 | PTPN11 | protein tyrosine phosphatase, non-receptor type 11 | ![]() |
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2 | 2 | ||||||
MIRT622370 | SALL1 | spalt like transcription factor 1 | ![]() |
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2 | 2 | ||||||
MIRT624371 | CDK12 | cyclin dependent kinase 12 | ![]() |
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2 | 2 | ||||||
MIRT624995 | ZNF665 | zinc finger protein 665 | ![]() |
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2 | 4 | ||||||
MIRT626875 | AP3B1 | adaptor related protein complex 3 beta 1 subunit | ![]() |
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2 | 2 | ||||||
MIRT627737 | RAP2B | RAP2B, member of RAS oncogene family | ![]() |
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2 | 4 | ||||||
MIRT628490 | ADAT2 | adenosine deaminase, tRNA specific 2 | ![]() |
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2 | 2 | ||||||
MIRT633647 | PLEKHG7 | pleckstrin homology and RhoGEF domain containing G7 | ![]() |
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2 | 4 | ||||||
MIRT634028 | SLC30A3 | solute carrier family 30 member 3 | ![]() |
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2 | 3 | ||||||
MIRT635923 | GLTSCR2 | NOP53 ribosome biogenesis factor | ![]() |
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2 | 2 | ||||||
MIRT638287 | SERBP1 | SERPINE1 mRNA binding protein 1 | ![]() |
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2 | 2 | ||||||
MIRT641959 | RNF115 | ring finger protein 115 | ![]() |
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2 | 2 | ||||||
MIRT643573 | CTNNA3 | catenin alpha 3 | ![]() |
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2 | 2 | ||||||
MIRT645180 | NOL9 | nucleolar protein 9 | ![]() |
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2 | 4 | ||||||
MIRT647497 | ZNF639 | zinc finger protein 639 | ![]() |
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2 | 2 | ||||||
MIRT647682 | PCK1 | phosphoenolpyruvate carboxykinase 1 | ![]() |
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2 | 2 | ||||||
MIRT648422 | MYOZ3 | myozenin 3 | ![]() |
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2 | 2 | ||||||
MIRT650113 | ZCCHC9 | zinc finger CCHC-type containing 9 | ![]() |
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2 | 2 | ||||||
MIRT651076 | ZNF518B | zinc finger protein 518B | ![]() |
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2 | 4 | ||||||
MIRT651415 | ZADH2 | zinc binding alcohol dehydrogenase domain containing 2 | ![]() |
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2 | 2 | ||||||
MIRT651456 | XKR4 | XK related 4 | ![]() |
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2 | 2 | ||||||
MIRT653619 | SLC30A4 | solute carrier family 30 member 4 | ![]() |
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2 | 2 | ||||||
MIRT653637 | SLC30A1 | solute carrier family 30 member 1 | ![]() |
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2 | 2 | ||||||
MIRT654896 | POU2F1 | POU class 2 homeobox 1 | ![]() |
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2 | 2 | ||||||
MIRT656483 | MAP3K9 | mitogen-activated protein kinase kinase kinase 9 | ![]() |
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2 | 2 | ||||||
MIRT658016 | GABRA4 | gamma-aminobutyric acid type A receptor alpha4 subunit | ![]() |
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2 | 2 | ||||||
MIRT658041 | FZD10 | frizzled class receptor 10 | ![]() |
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2 | 2 | ||||||
MIRT660093 | BTBD3 | BTB domain containing 3 | ![]() |
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2 | 2 | ||||||
MIRT663923 | MAGEF1 | MAGE family member F1 | ![]() |
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2 | 2 | ||||||
MIRT665882 | TGIF2 | TGFB induced factor homeobox 2 | ![]() |
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2 | 2 | ||||||
MIRT669051 | CEP128 | centrosomal protein 128 | ![]() |
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2 | 2 | ||||||
MIRT669711 | AAGAB | alpha and gamma adaptin binding protein | ![]() |
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2 | 2 | ||||||
MIRT686812 | SNX2 | sorting nexin 2 | ![]() |
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2 | 4 | ||||||
MIRT689883 | SOD2 | superoxide dismutase 2 | ![]() |
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2 | 2 | ||||||
MIRT693274 | GLRX2 | glutaredoxin 2 | ![]() |
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2 | 4 | ||||||
MIRT697056 | BCAR1 | BCAR1, Cas family scaffolding protein | ![]() |
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2 | 2 | ||||||
MIRT703297 | GID4 | GID complex subunit 4 homolog | ![]() |
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2 | 2 | ||||||
MIRT704087 | DYRK2 | dual specificity tyrosine phosphorylation regulated kinase 2 | ![]() |
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2 | 2 | ||||||
MIRT707719 | CDC6 | cell division cycle 6 | ![]() |
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2 | 2 | ||||||
MIRT708136 | GK5 | glycerol kinase 5 (putative) | ![]() |
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2 | 2 | ||||||
MIRT709212 | KLHL30 | kelch like family member 30 | ![]() |
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2 | 2 | ||||||
MIRT710062 | RWDD2A | RWD domain containing 2A | ![]() |
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2 | 2 | ||||||
MIRT712770 | POU6F2 | POU class 6 homeobox 2 | ![]() |
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2 | 2 | ||||||
MIRT715073 | TMTC1 | transmembrane and tetratricopeptide repeat containing 1 | ![]() |
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2 | 2 | ||||||
MIRT715387 | TADA3 | transcriptional adaptor 3 | ![]() |
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2 | 2 | ||||||
MIRT717712 | NCKAP1 | NCK associated protein 1 | ![]() |
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2 | 2 |
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