pre-miRNA Information
pre-miRNA hsa-mir-3911   
Genomic Coordinates chr9: 127690687 - 127690795
Description Homo sapiens miR-3911 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3911
Sequence 12| UGUGUGGAUCCUGGAGGAGGCA |33
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
431152 7 ClinVar
COSM3847691 15 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs943029638 2 dbSNP
rs780635543 3 dbSNP
rs371437556 6 dbSNP
rs1135401819 7 dbSNP
rs748706130 14 dbSNP
rs1403241180 15 dbSNP
rs779344153 17 dbSNP
rs755366929 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CAMKK2   
Synonyms CAMKK, CAMKKB
Description calcium/calmodulin dependent protein kinase kinase 2
Transcript NM_153499   
Other Transcripts NM_006549 , NM_153500 , NM_172214 , NM_172215 , NM_172216 , NM_172226   
Expression
Putative miRNA Targets on CAMKK2
3'UTR of CAMKK2
(miRNA target sites are highlighted)
>CAMKK2|NM_153499|3'UTR
   1 GAGGCAGTCCCTGCGTGGAAAGTTGCTGGGCCCCCGCCCCCGGCTCCCCCGCACGCATGCATCCACTGCGGCCGGAGGAG
  81 GCCATGGAGCCCGAGTAGCTGCCTGGATCGCTCGACCTCGCATGCGCGCCGCGTCGCCTCTGGGGGGCTGCTGCACCGCG
 161 TTTCCATAGCAGCATGTCCTACGGAAACCCAGCACGTGTGTAGAGCCTCGATCGTCATCTCTGGTTATTTGTTTTTTCCT
 241 TTGTTGTTTTAAAGGGGACAAAAAAAAAAAAAGGACTTGACTCCATGACGTCGACCGTGGCCGCTGGCTGGCTGGACAGG
 321 CGGGTGTGAGGAGTTGCAGACCCAAACCCACGTGCATTTTGGGACAATTGCTTTTTAAAACGTTTTTATGCCAAAAATCC
 401 TTCATTGTGATTTTCAGAACCACGTCAGATATACCAAGTGACTGTGTGTGGGGTTTGACAACTGTGGAAAGGCGAGCAGA
 481 AAACTCCGGCGGTCTGAGGCCATGGAGGTGGTTGCTGCATTTGAGAGGGAGTAGGGGGCTAGATGTGGCTCCTAGTGCAA
 561 ACCGGAAACCATGGCACCTTCCAGAGCCGTGGTCTCAAGGAGTCAGAGCAGGGCTGGCCCTCAGTAGCTGCAGGGAGCTT
 641 TGATGCAACTTATTTGTAAGAAGGATTTTTAAATTTTTTATGGGTAGAATTGTAGTCAGGAAAACAGAAAGGGCTTGAAA
 721 TTTAATAAGTGCTGCTGGAAGGGGATTTTCCAAGCCTGGAAGGGTATTCAGCAGCTGTGGTGGGGAAACATTTCTCCTGA
 801 AAGACTGAACGTGTTTCTTCATGACAGCTGCTCAAAGCAGGTTTCTGAGATAGCTGACCGAGCTCTGGTAAATCTCTTTG
 881 TCAAATTACGAAAACTTCAGGGTGAAATCCTATGCTTCCATGTACATTACATGGCTTAAGATTAAACAAAAACATTTTTC
 961 AAGTCTCTAACTAGAGTGAACTCTAGAGCACAGTAGTTCAGAAACTATTTAGAGCTTCCAGGATATATTTCACAGCTTCA
1041 GGCATGTGATCAGTTAGAGCCGATGAAACCTATGCCCGCCTGTATATATATTAGCAGCTTAGCTAGTTCATAACCTGTAT
1121 ATTCTAAAGACTGCTAAGGTTTTGTTTTCATTTTAAATCCTAGCTGATTGTTGTGGTCAATGAAATACCCAGTTTCTGGA
1201 GGGCCAGGTGGGAAATGCTTTCACTGGACCAACACACAAATGATCATCCTGAGGATCTGAGCTTCCCTAGACTCCACACA
1281 ATAACCTTGGGGCACCCTTTTAGAGAAGACTGTTGAAACCCACAGCACTCGTTGGGGTATGAGGAAACCAGGGCTTGGCA
1361 CAGGAAGTTCCCCTTTGTAGCTAAAAGTCCAGAAAGAAAGGGTTCATCTTTTTGACTTCCAACTGATATTGGGAAGTTTG
1441 GTTGAGGTTCAAGTGTGACTCCTTCCAGAGCCACAGGTAGGGGAGTGTGAAGTTGAGGGGGAGGAAAGCTGGAAGGACTC
1521 TGCCTTGGGAGATTCCCAGCTCTGCTTTCCAGCGCTTGGTGGAATCTGGGCTGGGGAAAGACGGCACCGGGAAACTCTGC
1601 TTCCCCATTGTTTCCATCTGATCAGCTGTGGTGTGAGGACTTCTCAGACAAAGGCAAGGCCTCGTGCCCCTGCCCAGCCC
1681 ATTCATGGAGCCCTGGGCCTTCTTGGCTTCCATAGATCCTAAGCTCTTGACTGTAGTTTAGCCAGACTTGTTTTGCTATC
1761 TTATAAGCAGTTCAGAATTAGGGAATGCTGGTTTTGAAGAGCAAAGGACAGGTAGTCTAGAGAGGGTCGTCTGGCCTGCT
1841 TGCTGGGTCTTTGTAACCCAGCACTTCCTCTTGCCCTCCTGGCTTTATGTTTATGGGGAGAGGACTCAATAGCTCCACCC
1921 CTTCTGGCACCAGATGGGGCTTGGTTAGTTTGCAATAAGCACCTTGCAGAGGTTAAAGCCAGCGGGTCCCTAGTCTTAGG
2001 CCCAGCCTGCTTGTGTGGGCTCTGGCCTGGCCTGGTGGCTGGCCCAGGGGGCAGCAGTGCTTAGAGCTTCTGCAGGGCTT
2081 CTCTTGTTTACACAGCTGCATCAGACAATGCCATTTCTCCCCACCACGGAACCTTCCATCTAAGATTTCTTCCAGGGAAT
2161 GCCAGCAATCAGGCAGCACCCAGCTGTGGGGGCAGTGGGGTGGGGGAGACCCACATTGATGACTTTTTTTTTTTCTTTTA
2241 ATGAAGAAACACCAAAGAAAGCTGTGGAAAGGACCTGCCCCACATGAAAAGGATAAGCCAAGATGGCTGTAAACACAGAG
2321 CATTTGAGCTGCCACTCTTGGAGCACATTGATTTTTCAAAAGCCAGCTCTGTCAGGAAAGGAGGTGCTGTTATGAGCAGC
2401 TCTTCCAGTGGGCAAAGAGGACGCCCATAATTTCTTCCATTGCTAGCTCATCTGTGGGACCAATTTGGTGTAAGCAACCT
2481 GTGGCCTGCACTTGTGGCCTCGAAGGAAGCACAAACCCTCCATCCACTTCCCATTTCCTCTGCCCTTTTCCACCTCCCCC
2561 TTCCATCCCACCAGCTGCCAGTGGCTCCCAGAAAGCCTTATTGAGCCCCTTGTTGACACTTGGGGCTGCGGAGGCCTCTC
2641 CCTACTGGTCTGGCCTTTCCTGAGAGGCAGGTCTTCCGTCCTCAGAGCCTTTCTGGAACAAGGAGAATGCCTGTGCAGGT
2721 GGACACACAGGCCTGGCCTGTCGCTCTCACTTGTCTTCCAGCGGGGAGCTTCACGTTGCCGAGTGGAAGAACCATGACCT
2801 CCACTTGCTTCCAAGGTGCTAGGGAAGTTTCAGGGTACGCTGGTTCCCCTCTCCAGCTGGAGGCCGAGTTTCTGGGGACT
2881 GCAGATTTTTCTACTCTGTGATCGATTCAATGCCCGATGCTTCTGTTTCATTCCCGACCCTTTCTACTATGCATTTTCCT
2961 TTTATCAGGTGTATAAAGTTAAATACTGTGTATTTATCACTAAAAAGTACATGAACTTAAGAGACAACTAAGCCTTTCGT
3041 GTTTTTCCACAGGTGTTTAAGCTTCTCTGTACAGTTGAAATAAACAGACAGCAAAATGGTGCCAAAAAAAAAAAAAAAAA
3121 AA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acgGAGGAGGUCCUAGGUGUGu 5'
             ||:| |:||  ||||||| 
Target 5' gagCTTCCCTAGACTCCACACa 3'
1259 - 1280 163.00 -26.40
2
miRNA  3' acggaGGAGGUCCU-----AGGUGUgu 5'
               |:|||||||     |:||||  
Target 5' tagagCTTCCAGGATATATTTCACAgc 3'
1010 - 1036 129.00 -19.90
3
miRNA  3' acgGAGGAGGUCCUAGGUGUGu 5'
             ||:|||: |  |::|||| 
Target 5' gggCTTCTCTTG--TTTACACa 3'
2075 - 2094 127.00 -17.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
871740 84 ClinVar
COSM9924570 7 COSMIC
COSM6619281 36 COSMIC
COSM8302558 39 COSMIC
COSM6619303 55 COSMIC
COSM4622458 56 COSMIC
COSM5424938 58 COSMIC
COSM7606231 77 COSMIC
COSM6340278 85 COSMIC
COSN26969095 125 COSMIC
COSN14505601 132 COSMIC
COSN30450445 137 COSMIC
COSN30747881 142 COSMIC
COSN26548111 188 COSMIC
COSN31523673 201 COSMIC
COSM4146725 259 COSMIC
COSM4603092 259 COSMIC
COSM4603093 259 COSMIC
COSM5445873 259 COSMIC
COSM9118685 259 COSMIC
COSM4590022 260 COSMIC
COSM9845054 260 COSMIC
COSM9845060 260 COSMIC
COSM4603020 273 COSMIC
COSM5704319 273 COSMIC
COSM6391762 274 COSMIC
COSM3384096 289 COSMIC
COSM6332187 322 COSMIC
COSM4591622 325 COSMIC
COSN31602826 424 COSMIC
COSN22261458 477 COSMIC
COSN30761304 500 COSMIC
COSN1143453 611 COSMIC
COSN31528549 722 COSMIC
COSN31528283 889 COSMIC
COSN25843485 1450 COSMIC
COSN7610001 1497 COSMIC
COSN20628088 1554 COSMIC
COSN22980630 1685 COSMIC
COSN31541201 1806 COSMIC
COSN31577776 1835 COSMIC
COSN31540517 1868 COSMIC
COSN31486590 2119 COSMIC
COSN30174392 2183 COSMIC
COSN31552166 2222 COSMIC
COSN27223892 2223 COSMIC
COSN16474987 2290 COSMIC
COSN30174302 2302 COSMIC
COSN23735310 2386 COSMIC
COSN1560193 2772 COSMIC
COSN20624065 2773 COSMIC
COSN17363012 2811 COSMIC
COSN16245303 3099 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs776196438 1 dbSNP
rs200846862 5 dbSNP
rs1326533211 7 dbSNP
rs1421110149 9 dbSNP
rs1251265448 10 dbSNP
rs779797646 11 dbSNP
rs1456553731 12 dbSNP
rs1254786622 14 dbSNP
rs1218687088 15 dbSNP
rs758266407 23 dbSNP
rs1484898087 26 dbSNP
rs144382983 31 dbSNP
rs942728608 32 dbSNP
rs201361901 33 dbSNP
rs757219573 34 dbSNP
rs200090154 35 dbSNP
rs140624198 36 dbSNP
rs771562905 36 dbSNP
rs753007936 37 dbSNP
rs201486892 38 dbSNP
rs759999951 41 dbSNP
rs138272246 42 dbSNP
rs200750895 42 dbSNP
rs866150487 43 dbSNP
rs1390381989 44 dbSNP
rs766910933 46 dbSNP
rs761252729 47 dbSNP
rs776152407 48 dbSNP
rs746645841 50 dbSNP
rs1416023358 51 dbSNP
rs1437886558 51 dbSNP
rs775271665 54 dbSNP
rs1194145163 55 dbSNP
rs771764153 56 dbSNP
rs868609766 57 dbSNP
rs200101277 60 dbSNP
rs202003410 63 dbSNP
rs1486093264 64 dbSNP
rs200665117 66 dbSNP
rs749337315 67 dbSNP
rs777966197 68 dbSNP
rs562414798 69 dbSNP
rs1234530777 70 dbSNP
rs1384713240 72 dbSNP
rs752954809 73 dbSNP
rs199629186 74 dbSNP
rs755230283 77 dbSNP
rs1361633440 80 dbSNP
rs1242058071 81 dbSNP
rs201638594 84 dbSNP
rs766757308 87 dbSNP
rs750978029 88 dbSNP
rs763580915 89 dbSNP
rs760249050 92 dbSNP
rs917895094 93 dbSNP
rs1375826263 94 dbSNP
rs550439294 95 dbSNP
rs200831782 101 dbSNP
rs376839554 102 dbSNP
rs199743351 104 dbSNP
rs1252620840 106 dbSNP
rs1486455010 109 dbSNP
rs1280674435 110 dbSNP
rs980736736 112 dbSNP
rs201317802 113 dbSNP
rs1342314010 114 dbSNP
rs1273559898 115 dbSNP
rs963536067 117 dbSNP
rs1017478209 119 dbSNP
rs748263829 122 dbSNP
rs564725074 125 dbSNP
rs200140244 126 dbSNP
rs1377495943 127 dbSNP
rs1335147265 128 dbSNP
rs755249627 130 dbSNP
rs749747452 131 dbSNP
rs199749068 132 dbSNP
rs201611432 135 dbSNP
rs1422580465 136 dbSNP
rs200473005 139 dbSNP
rs750925332 140 dbSNP
rs1396529213 142 dbSNP
rs765741456 142 dbSNP
rs192867478 143 dbSNP
rs1186461584 145 dbSNP
rs1272736238 146 dbSNP
rs1440148305 147 dbSNP
rs778294517 148 dbSNP
rs1274544188 149 dbSNP
rs1231500751 157 dbSNP
rs200790173 158 dbSNP
rs572216418 160 dbSNP
rs1053939361 166 dbSNP
rs1182894016 167 dbSNP
rs1258877408 169 dbSNP
rs560166563 170 dbSNP
rs1473917356 181 dbSNP
rs200366350 182 dbSNP
rs1163614825 191 dbSNP
rs1410018308 191 dbSNP
rs201799040 205 dbSNP
rs200854014 206 dbSNP
rs199903556 207 dbSNP
rs1258050430 209 dbSNP
rs1411387053 210 dbSNP
rs1217147005 211 dbSNP
rs1304445319 212 dbSNP
rs201642203 213 dbSNP
rs1357808592 214 dbSNP
rs1284947820 217 dbSNP
rs1447612962 224 dbSNP
rs1302523077 227 dbSNP
rs756495836 231 dbSNP
rs1216543785 238 dbSNP
rs565451101 238 dbSNP
rs201358579 240 dbSNP
rs767034293 243 dbSNP
rs574486426 246 dbSNP
rs61953427 247 dbSNP
rs1399455102 248 dbSNP
rs1165488680 250 dbSNP
rs1168497476 251 dbSNP
rs1462800332 253 dbSNP
rs770833088 254 dbSNP
rs1414288339 255 dbSNP
rs1162243263 257 dbSNP
rs754562132 258 dbSNP
rs780676411 258 dbSNP
rs200091804 259 dbSNP
rs1234057788 260 dbSNP
rs1473144909 262 dbSNP
rs949611470 265 dbSNP
rs1187921262 267 dbSNP
rs201965034 272 dbSNP
rs200501220 273 dbSNP
rs398021385 273 dbSNP
rs398056010 273 dbSNP
rs63023660 273 dbSNP
rs761569371 273 dbSNP
rs778701848 273 dbSNP
rs869098373 273 dbSNP
rs868684049 274 dbSNP
rs1429017058 275 dbSNP
rs199761045 275 dbSNP
rs773215768 276 dbSNP
rs1181892972 277 dbSNP
rs769865227 279 dbSNP
rs1373448077 280 dbSNP
rs1238076921 282 dbSNP
rs1197322665 283 dbSNP
rs1298804855 283 dbSNP
rs1197975814 285 dbSNP
rs188731936 289 dbSNP
rs982705191 293 dbSNP
rs1361556322 294 dbSNP
rs1220085460 295 dbSNP
rs1021674898 296 dbSNP
rs868071123 297 dbSNP
rs989932892 298 dbSNP
rs143403727 302 dbSNP
rs1281557590 307 dbSNP
rs919970742 310 dbSNP
rs1376318032 312 dbSNP
rs974549274 316 dbSNP
rs1329165488 317 dbSNP
rs1221599348 321 dbSNP
rs779102935 321 dbSNP
rs1446098803 322 dbSNP
rs1447214843 324 dbSNP
rs866412558 325 dbSNP
rs199623720 328 dbSNP
rs1350188271 332 dbSNP
rs1213069119 337 dbSNP
rs901641944 348 dbSNP
rs1322670941 349 dbSNP
rs201337186 351 dbSNP
rs1403456969 352 dbSNP
rs1017526177 354 dbSNP
rs1007856657 355 dbSNP
rs200630900 356 dbSNP
rs199657939 367 dbSNP
rs201083555 373 dbSNP
rs1192606203 380 dbSNP
rs1393032428 382 dbSNP
rs1007407552 398 dbSNP
rs185456903 404 dbSNP
rs201876503 415 dbSNP
rs1030252481 420 dbSNP
rs1402474781 423 dbSNP
rs201017296 424 dbSNP
rs1316286973 431 dbSNP
rs1344729913 432 dbSNP
rs1437456872 436 dbSNP
rs1414426067 443 dbSNP
rs931421203 445 dbSNP
rs897232905 447 dbSNP
rs1009522022 459 dbSNP
rs892114281 461 dbSNP
rs1037049548 465 dbSNP
rs200467295 471 dbSNP
rs938882385 474 dbSNP
rs202202816 477 dbSNP
rs200991431 487 dbSNP
rs200160343 488 dbSNP
rs570629850 490 dbSNP
rs548302120 491 dbSNP
rs904967178 492 dbSNP
rs1044658526 497 dbSNP
rs1045174421 506 dbSNP
rs1467835765 509 dbSNP
rs948977513 521 dbSNP
rs536293119 534 dbSNP
rs558665691 535 dbSNP
rs1468510635 537 dbSNP
rs949555698 544 dbSNP
rs202085689 549 dbSNP
rs11548316 552 dbSNP
rs1208911655 553 dbSNP
rs200971400 554 dbSNP
rs199863012 555 dbSNP
rs1486660589 559 dbSNP
rs201651886 566 dbSNP
rs1047752300 568 dbSNP
rs200805447 579 dbSNP
rs1440562638 581 dbSNP
rs1332431208 585 dbSNP
rs919902319 588 dbSNP
rs200086514 589 dbSNP
rs1219810800 591 dbSNP
rs1356366478 593 dbSNP
rs564585806 594 dbSNP
rs1234628671 596 dbSNP
rs1270829149 606 dbSNP
rs141097334 609 dbSNP
rs1333680034 615 dbSNP
rs911312220 628 dbSNP
rs1252404438 640 dbSNP
rs201928622 646 dbSNP
rs1180930827 650 dbSNP
rs200595526 652 dbSNP
rs560256447 653 dbSNP
rs1017849028 656 dbSNP
rs1237986634 661 dbSNP
rs954520649 662 dbSNP
rs199800871 663 dbSNP
rs759470302 666 dbSNP
rs201163258 680 dbSNP
rs1461089066 683 dbSNP
rs1171738601 684 dbSNP
rs200627528 688 dbSNP
rs1363064367 690 dbSNP
rs952039810 695 dbSNP
rs1297008029 697 dbSNP
rs151020217 697 dbSNP
rs1382919974 701 dbSNP
rs1026972137 717 dbSNP
rs199675446 725 dbSNP
rs995480759 730 dbSNP
rs956670066 737 dbSNP
rs1290871512 742 dbSNP
rs1354349710 743 dbSNP
rs201063765 754 dbSNP
rs1387438954 756 dbSNP
rs192516901 764 dbSNP
rs200616821 769 dbSNP
rs202064531 780 dbSNP
rs1195037259 782 dbSNP
rs201489862 786 dbSNP
rs544244526 790 dbSNP
rs200235937 797 dbSNP
rs202139396 802 dbSNP
rs1000546711 803 dbSNP
rs201206462 810 dbSNP
rs1165372279 811 dbSNP
rs1375006695 827 dbSNP
rs1653590 828 dbSNP
rs907401506 833 dbSNP
rs1437121542 835 dbSNP
rs202076242 843 dbSNP
rs558522783 853 dbSNP
rs1400088115 858 dbSNP
rs186512554 859 dbSNP
rs1190310952 860 dbSNP
rs1053324 865 dbSNP
rs1488345162 868 dbSNP
rs1226297354 880 dbSNP
rs200140364 884 dbSNP
rs1292983943 889 dbSNP
rs11065503 890 dbSNP
rs942675458 895 dbSNP
rs911261334 899 dbSNP
rs200791838 900 dbSNP
rs200004160 912 dbSNP
rs554947320 915 dbSNP
rs1228234107 926 dbSNP
rs201353463 929 dbSNP
rs200731691 930 dbSNP
rs142749471 934 dbSNP
rs182176926 935 dbSNP
rs975893218 955 dbSNP
rs1455869042 971 dbSNP
rs1386472673 972 dbSNP
rs1395048537 978 dbSNP
rs1453786197 979 dbSNP
rs201086502 989 dbSNP
rs568826615 993 dbSNP
rs910412658 994 dbSNP
rs1304766669 996 dbSNP
rs986355937 1000 dbSNP
rs1427668751 1009 dbSNP
rs1369860894 1025 dbSNP
rs200591997 1043 dbSNP
rs199795437 1045 dbSNP
rs1372834114 1054 dbSNP
rs1231812271 1055 dbSNP
rs770088840 1057 dbSNP
rs201468574 1061 dbSNP
rs1653589 1062 dbSNP
rs993237122 1068 dbSNP
rs148510926 1070 dbSNP
rs1484968415 1072 dbSNP
rs202051070 1074 dbSNP
rs1013269459 1076 dbSNP
rs201294939 1077 dbSNP
rs1269962399 1078 dbSNP
rs200418972 1084 dbSNP
rs202087603 1085 dbSNP
rs201175972 1088 dbSNP
rs1026204023 1092 dbSNP
rs994354007 1099 dbSNP
rs200232567 1108 dbSNP
rs1202053249 1109 dbSNP
rs1420169657 1116 dbSNP
rs1038609459 1127 dbSNP
rs898699400 1127 dbSNP
rs1452444829 1136 dbSNP
rs112606346 1138 dbSNP
rs1015539376 1139 dbSNP
rs781436218 1141 dbSNP
rs201247087 1144 dbSNP
rs200089667 1154 dbSNP
rs201485300 1160 dbSNP
rs1196930025 1188 dbSNP
rs200746768 1194 dbSNP
rs200099212 1197 dbSNP
rs907262451 1206 dbSNP
rs1341536636 1208 dbSNP
rs201779365 1209 dbSNP
rs1254359937 1210 dbSNP
rs200790656 1215 dbSNP
rs199621836 1217 dbSNP
rs1051116184 1232 dbSNP
rs1393054871 1236 dbSNP
rs755476396 1237 dbSNP
rs201844262 1243 dbSNP
rs1315139254 1245 dbSNP
rs747515134 1247 dbSNP
rs893283123 1262 dbSNP
rs913326549 1285 dbSNP
rs11065502 1286 dbSNP
rs935173755 1296 dbSNP
rs925140367 1302 dbSNP
rs1407760885 1304 dbSNP
rs1179402531 1305 dbSNP
rs199741757 1308 dbSNP
rs1329429290 1314 dbSNP
rs934893427 1323 dbSNP
rs144715470 1324 dbSNP
rs200186566 1330 dbSNP
rs1399380325 1331 dbSNP
rs1171486339 1335 dbSNP
rs199787105 1348 dbSNP
rs1163836641 1353 dbSNP
rs1354843792 1354 dbSNP
rs201590707 1356 dbSNP
rs1296341856 1361 dbSNP
rs991799161 1367 dbSNP
rs910307124 1382 dbSNP
rs1293948189 1383 dbSNP
rs1357521075 1384 dbSNP
rs200490052 1391 dbSNP
rs985875677 1401 dbSNP
rs1308380526 1402 dbSNP
rs1207102540 1403 dbSNP
rs202050732 1406 dbSNP
rs930482639 1409 dbSNP
rs1480574671 1419 dbSNP
rs1212311828 1421 dbSNP
rs201123743 1422 dbSNP
rs200360406 1425 dbSNP
rs201797365 1429 dbSNP
rs1363636904 1432 dbSNP
rs1473948526 1436 dbSNP
rs1186700131 1441 dbSNP
rs200853654 1444 dbSNP
rs1183106743 1449 dbSNP
rs1430034638 1455 dbSNP
rs1440089000 1465 dbSNP
rs1168036556 1468 dbSNP
rs971988811 1477 dbSNP
rs189904844 1493 dbSNP
rs187895310 1497 dbSNP
rs1314724645 1498 dbSNP
rs1007126222 1501 dbSNP
rs1283776003 1506 dbSNP
rs890057079 1537 dbSNP
rs763602350 1547 dbSNP
rs1216598807 1551 dbSNP
rs201242634 1553 dbSNP
rs200116946 1554 dbSNP
rs1341970737 1558 dbSNP
rs532796904 1559 dbSNP
rs1283097473 1579 dbSNP
rs1226846397 1580 dbSNP
rs201719396 1582 dbSNP
rs7296196 1587 dbSNP
rs891828101 1588 dbSNP
rs1184485793 1589 dbSNP
rs199798705 1598 dbSNP
rs759100397 1599 dbSNP
rs936111134 1599 dbSNP
rs201778294 1608 dbSNP
rs1432891723 1610 dbSNP
rs1333566471 1616 dbSNP
rs1338637667 1629 dbSNP
rs1477402698 1638 dbSNP
rs893345067 1644 dbSNP
rs1452728286 1655 dbSNP
rs200734741 1663 dbSNP
rs774253641 1673 dbSNP
rs562799891 1681 dbSNP
rs1287348892 1692 dbSNP
rs1364833005 1699 dbSNP
rs1235516111 1701 dbSNP
rs925120410 1712 dbSNP
rs1346310682 1724 dbSNP
rs1318098972 1745 dbSNP
rs1456401233 1750 dbSNP
rs199621592 1753 dbSNP
rs1284346822 1756 dbSNP
rs1318264557 1756 dbSNP
rs375653088 1758 dbSNP
rs1159516057 1779 dbSNP
rs201485999 1790 dbSNP
rs1241163590 1796 dbSNP
rs1033178438 1800 dbSNP
rs999133924 1801 dbSNP
rs1468721447 1807 dbSNP
rs1195291672 1809 dbSNP
rs1250962189 1828 dbSNP
rs200569524 1829 dbSNP
rs1159134763 1830 dbSNP
rs551593723 1831 dbSNP
rs1402526896 1837 dbSNP
rs1157139302 1838 dbSNP
rs544594987 1846 dbSNP
rs1388204508 1851 dbSNP
rs1445291735 1856 dbSNP
rs1245064074 1859 dbSNP
rs532396567 1862 dbSNP
rs199682265 1863 dbSNP
rs140846979 1864 dbSNP
rs1436377625 1880 dbSNP
rs201381110 1885 dbSNP
rs1446639447 1893 dbSNP
rs1280664483 1899 dbSNP
rs1374796518 1901 dbSNP
rs200204371 1914 dbSNP
rs1267046679 1926 dbSNP
rs1653588 1934 dbSNP
rs981159553 1936 dbSNP
rs201274597 1937 dbSNP
rs200307689 1944 dbSNP
rs1271023865 1949 dbSNP
rs944389376 1954 dbSNP
rs1195329642 1955 dbSNP
rs888749048 1965 dbSNP
rs991746028 1973 dbSNP
rs1354081505 1979 dbSNP
rs202049022 1980 dbSNP
rs1175530074 1983 dbSNP
rs183408592 1984 dbSNP
rs200121162 1985 dbSNP
rs1384304273 1987 dbSNP
rs202214622 1989 dbSNP
rs200967158 1993 dbSNP
rs1447518497 2001 dbSNP
rs199947351 2003 dbSNP
rs1392669252 2006 dbSNP
rs201645993 2011 dbSNP
rs920467565 2013 dbSNP
rs542804408 2015 dbSNP
rs1440715222 2020 dbSNP
rs1287124947 2022 dbSNP
rs559587524 2023 dbSNP
rs1355616698 2027 dbSNP
rs200839343 2035 dbSNP
rs200102410 2045 dbSNP
rs1291062860 2048 dbSNP
rs201669623 2054 dbSNP
rs200637479 2059 dbSNP
rs1017087178 2071 dbSNP
rs199750539 2074 dbSNP
rs940640816 2077 dbSNP
rs145160159 2079 dbSNP
rs201160204 2081 dbSNP
rs1251147432 2083 dbSNP
rs1029919372 2087 dbSNP
rs982026109 2091 dbSNP
rs1190251386 2092 dbSNP
rs373139606 2095 dbSNP
rs1416000600 2104 dbSNP
rs1472647177 2105 dbSNP
rs1168831855 2120 dbSNP
rs1399131385 2122 dbSNP
rs971804937 2127 dbSNP
rs1387091861 2128 dbSNP
rs200625078 2132 dbSNP
rs191466965 2140 dbSNP
rs1339484410 2147 dbSNP
rs1227755400 2152 dbSNP
rs538669974 2156 dbSNP
rs1337267078 2157 dbSNP
rs199672958 2163 dbSNP
rs201062980 2186 dbSNP
rs1242907460 2189 dbSNP
rs186976030 2190 dbSNP
rs777060768 2195 dbSNP
rs1213143954 2196 dbSNP
rs1254229488 2202 dbSNP
rs181795744 2212 dbSNP
rs200390427 2214 dbSNP
rs1195658927 2230 dbSNP
rs1446025786 2235 dbSNP
rs202208143 2235 dbSNP
rs62933860 2235 dbSNP
rs879515827 2235 dbSNP
rs529290312 2243 dbSNP
rs1396233586 2247 dbSNP
rs1449637128 2251 dbSNP
rs1290791879 2257 dbSNP
rs1223088135 2263 dbSNP
rs1310507015 2264 dbSNP
rs766409432 2279 dbSNP
rs957425630 2282 dbSNP
rs1361510837 2283 dbSNP
rs1033209682 2287 dbSNP
rs1319891371 2291 dbSNP
rs1324406458 2293 dbSNP
rs1213463214 2296 dbSNP
rs201413450 2301 dbSNP
rs999040449 2309 dbSNP
rs768833829 2313 dbSNP
rs200290846 2314 dbSNP
rs1362126892 2318 dbSNP
rs1349940513 2319 dbSNP
rs1232045724 2320 dbSNP
rs1254328123 2321 dbSNP
rs903327736 2328 dbSNP
rs190987444 2329 dbSNP
rs1205869997 2334 dbSNP
rs1019617552 2338 dbSNP
rs1433877631 2348 dbSNP
rs1188301306 2357 dbSNP
rs866924210 2359 dbSNP
rs1009118183 2360 dbSNP
rs1653587 2368 dbSNP
rs1174640828 2370 dbSNP
rs201200453 2376 dbSNP
rs200090922 2378 dbSNP
rs1453864410 2387 dbSNP
rs202074486 2389 dbSNP
rs200856127 2393 dbSNP
rs566786867 2394 dbSNP
rs939289780 2402 dbSNP
rs200118312 2407 dbSNP
rs202000996 2420 dbSNP
rs548380706 2422 dbSNP
rs530186417 2423 dbSNP
rs1239888362 2428 dbSNP
rs200663581 2431 dbSNP
rs947996419 2444 dbSNP
rs200028085 2454 dbSNP
rs985249464 2458 dbSNP
rs1274181079 2460 dbSNP
rs915923105 2462 dbSNP
rs1490796241 2463 dbSNP
rs201346068 2465 dbSNP
rs200726355 2479 dbSNP
rs1267310578 2486 dbSNP
rs957332340 2498 dbSNP
rs1419105720 2499 dbSNP
rs1249525993 2502 dbSNP
rs1409183978 2509 dbSNP
rs926045567 2513 dbSNP
rs199772562 2514 dbSNP
rs201086501 2517 dbSNP
rs200637562 2529 dbSNP
rs186581617 2537 dbSNP
rs977465014 2542 dbSNP
rs1396332986 2543 dbSNP
rs1456226714 2550 dbSNP
rs530167997 2552 dbSNP
rs199746213 2554 dbSNP
rs1397096188 2556 dbSNP
rs201762388 2557 dbSNP
rs967958728 2559 dbSNP
rs1309229051 2562 dbSNP
rs1348768397 2574 dbSNP
rs1031642027 2584 dbSNP
rs1337360682 2587 dbSNP
rs200466906 2591 dbSNP
rs199667752 2594 dbSNP
rs904576081 2601 dbSNP
rs201293310 2603 dbSNP
rs200420371 2606 dbSNP
rs1481229938 2609 dbSNP
rs1198151960 2617 dbSNP
rs180774031 2620 dbSNP
rs202087470 2624 dbSNP
rs1217046369 2625 dbSNP
rs189586058 2629 dbSNP
rs1056246676 2630 dbSNP
rs1421738018 2632 dbSNP
rs200973305 2634 dbSNP
rs994474748 2644 dbSNP
rs200245961 2646 dbSNP
rs757625932 2657 dbSNP
rs1368707074 2660 dbSNP
rs866698016 2666 dbSNP
rs1409317354 2671 dbSNP
rs201967412 2672 dbSNP
rs1036662266 2673 dbSNP
rs77542087 2677 dbSNP
rs184620621 2678 dbSNP
rs906391885 2680 dbSNP
rs1046212379 2685 dbSNP
rs1312457884 2698 dbSNP
rs201482395 2705 dbSNP
rs916516393 2711 dbSNP
rs1053681539 2713 dbSNP
rs1330985881 2717 dbSNP
rs181486026 2730 dbSNP
rs1482413787 2734 dbSNP
rs1210950921 2737 dbSNP
rs200098889 2742 dbSNP
rs201521644 2743 dbSNP
rs1428846838 2749 dbSNP
rs1180979614 2758 dbSNP
rs200796570 2762 dbSNP
rs1430083826 2767 dbSNP
rs1177507529 2769 dbSNP
rs1166593450 2770 dbSNP
rs542892291 2774 dbSNP
rs967487455 2778 dbSNP
rs780875586 2780 dbSNP
rs199619164 2784 dbSNP
rs1363009651 2788 dbSNP
rs201650187 2801 dbSNP
rs924859156 2802 dbSNP
rs1295923035 2805 dbSNP
rs1342034464 2806 dbSNP
rs200998685 2815 dbSNP
rs1280108677 2819 dbSNP
rs968683291 2819 dbSNP
rs1208902714 2831 dbSNP
rs76644550 2838 dbSNP
rs953640709 2839 dbSNP
rs201312635 2847 dbSNP
rs200186399 2848 dbSNP
rs1247230417 2849 dbSNP
rs1454655706 2851 dbSNP
rs995011367 2863 dbSNP
rs963022737 2865 dbSNP
rs199781113 2866 dbSNP
rs201756964 2868 dbSNP
rs200460976 2877 dbSNP
rs202202100 2883 dbSNP
rs1459057175 2884 dbSNP
rs2567982 2886 dbSNP
rs1005065066 2893 dbSNP
rs1442201873 2901 dbSNP
rs200361855 2903 dbSNP
rs906270011 2913 dbSNP
rs201797423 2915 dbSNP
rs11308 2916 dbSNP
rs200007145 2935 dbSNP
rs1284408296 2936 dbSNP
rs1330740143 2947 dbSNP
rs1206511404 2949 dbSNP
rs1267248738 2953 dbSNP
rs1037350881 2954 dbSNP
rs201353563 2987 dbSNP
rs201382215 2992 dbSNP
rs1215415430 2996 dbSNP
rs867710059 2997 dbSNP
rs1374712032 3002 dbSNP
rs1281839001 3003 dbSNP
rs200084800 3013 dbSNP
rs894944339 3015 dbSNP
rs1653586 3025 dbSNP
rs1408889200 3026 dbSNP
rs1473687600 3031 dbSNP
rs936565659 3033 dbSNP
rs200595539 3035 dbSNP
rs199798791 3038 dbSNP
rs201775202 3039 dbSNP
rs1348621769 3042 dbSNP
rs1041178938 3045 dbSNP
rs1279631872 3047 dbSNP
rs200732620 3049 dbSNP
rs1337578938 3057 dbSNP
rs1226132180 3067 dbSNP
rs552566964 3068 dbSNP
rs199629478 3076 dbSNP
rs1335192916 3087 dbSNP
rs924837520 3087 dbSNP
rs1287528133 3103 dbSNP
rs201370263 3106 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048188. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_ptb_knockdown ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acgGAGGAGGUCCUAGGUGugu 5'
             ||:| |:||  |||||   
Target 5' gagCUUCCCUAGACUCCAC--- 3'
18 - 36
2
miRNA  3' acggaggagguccUAGGugugu 5'
                       ||||     
Target 5' ---------gaucAUCCugagg 3'
1 - 13
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048188
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_ptb_knockdown
Location of target site ENST00000538733.1 | 3UTR | GAUCAUCCUGAGGAUCUGAGCUUCCCUAGACUCCAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC -0.674 0.05 -0.643 0.06 7 Click to see details
LUSC -0.366 0.32 -0.200 0.4 4 Click to see details
BRCA 0.269 0.33 0.200 0.37 5 Click to see details
THCA -0.052 0.47 -0.200 0.4 4 Click to see details
THCA -0.052 0.47 -0.200 0.4 4 Click to see details
THCA -0.052 0.47 -0.200 0.4 4 Click to see details
THCA -0.052 0.47 -0.200 0.4 4 Click to see details
THCA -0.052 0.47 -0.200 0.4 4 Click to see details
THCA -0.052 0.47 -0.200 0.4 4 Click to see details
THCA -0.052 0.47 -0.200 0.4 4 Click to see details
70 hsa-miR-3911 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT207399 MAT2A methionine adenosyltransferase 2A 2 6
MIRT284537 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT291946 TPM4 tropomyosin 4 2 2
MIRT293609 PVR poliovirus receptor 2 2
MIRT357688 PAIP2 poly(A) binding protein interacting protein 2 2 2
MIRT451607 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT452110 IFITM1 interferon induced transmembrane protein 1 2 2
MIRT457804 KLHL25 kelch like family member 25 2 2
MIRT462730 EFNB1 ephrin B1 2 2
MIRT463219 ZNF131 zinc finger protein 131 2 2
MIRT464141 VPS28 VPS28, ESCRT-I subunit 2 2
MIRT467582 SLC7A5 solute carrier family 7 member 5 2 6
MIRT470824 PLXND1 plexin D1 2 2
MIRT474230 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT478989 COLGALT1 collagen beta(1-O)galactosyltransferase 1 2 2
MIRT479462 CDK6 cyclin dependent kinase 6 2 2
MIRT483558 SYT2 synaptotagmin 2 2 2
MIRT484483 SLC9A1 solute carrier family 9 member A1 2 2
MIRT485224 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT490356 DPYSL5 dihydropyrimidinase like 5 2 4
MIRT493177 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT509802 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511815 HDGF heparin binding growth factor 2 2
MIRT512254 ARPP19 cAMP regulated phosphoprotein 19 2 6
MIRT513025 GPT2 glutamic--pyruvic transaminase 2 2 2
MIRT519640 ZNF772 zinc finger protein 772 2 4
MIRT531178 SIGLEC12 sialic acid binding Ig like lectin 12 (gene/pseudogene) 2 2
MIRT537870 EDA2R ectodysplasin A2 receptor 2 2
MIRT551914 IGLON5 IgLON family member 5 2 2
MIRT558359 DMTF1 cyclin D binding myb like transcription factor 1 2 2
MIRT559771 URGCP-MRPS24 URGCP-MRPS24 readthrough 2 4
MIRT559813 ZNF83 zinc finger protein 83 2 2
MIRT561999 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT565754 SERTAD2 SERTA domain containing 2 2 2
MIRT569423 DCAF8 DDB1 and CUL4 associated factor 8 2 2
MIRT569845 RGS5 regulator of G protein signaling 5 2 2
MIRT606928 CDK15 cyclin dependent kinase 15 2 2
MIRT607616 TMEM130 transmembrane protein 130 2 4
MIRT607629 TRIOBP TRIO and F-actin binding protein 2 2
MIRT607885 SATB1 SATB homeobox 1 2 2
MIRT607942 SSX2 SSX family member 2 2 4
MIRT608017 CARNS1 carnosine synthase 1 2 4
MIRT608036 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT608063 SSX2B SSX family member 2B 2 4
MIRT608558 SBK1 SH3 domain binding kinase 1 2 6
MIRT608915 NCDN neurochondrin 2 6
MIRT615876 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT618023 ELFN1 extracellular leucine rich repeat and fibronectin type III domain containing 1 2 2
MIRT620505 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT628101 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 2
MIRT628700 ZNF548 zinc finger protein 548 2 2
MIRT630658 POU2F1 POU class 2 homeobox 1 2 2
MIRT643508 ZNF28 zinc finger protein 28 2 2
MIRT646379 SLC22A6 solute carrier family 22 member 6 2 2
MIRT660041 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT687700 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT688858 CAMKK2 calcium/calmodulin dependent protein kinase kinase 2 2 2
MIRT690443 REPIN1 replication initiator 1 2 2
MIRT690456 ZNF33A zinc finger protein 33A 2 2
MIRT693796 RHOG ras homolog family member G 2 2
MIRT694274 ZNF529 zinc finger protein 529 2 4
MIRT697697 WAC WW domain containing adaptor with coiled-coil 2 2
MIRT700242 RCC2 regulator of chromosome condensation 2 2 2
MIRT701836 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT704255 DHCR24 24-dehydrocholesterol reductase 2 2
MIRT707203 SDK2 sidekick cell adhesion molecule 2 2 2
MIRT710365 CREB5 cAMP responsive element binding protein 5 2 2
MIRT711943 WDFY1 WD repeat and FYVE domain containing 1 2 2
MIRT715496 MAZ MYC associated zinc finger protein 2 2
MIRT719250 MS4A1 membrane spanning 4-domains A1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3911 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3911 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-3911 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-3911 Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3911 Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3911 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-mir-3911 Vincristine 5978 approved resistant cell line (W1)
hsa-mir-3911 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-miR-3911 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-3911 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3911 Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-3911 Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-3911 Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-3911 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3911 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3911 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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