pre-miRNA Information
pre-miRNA hsa-mir-3120   
Genomic Coordinates chr1: 172138808 - 172138888
Description Homo sapiens miR-3120 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3120-5p
Sequence 13| CCUGUCUGUGCCUGCUGUACA |33
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 1 + 172138838 26449202, 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26637643 8 COSMIC
COSN31603497 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386761 8 dbSNP
rs760725207 9 dbSNP
rs766486759 10 dbSNP
rs754055278 12 dbSNP
rs755288536 19 dbSNP
rs754726014 21 dbSNP
Putative Targets

Gene Information
Gene Symbol NXN   
Synonyms NRX, TRG-4
Description nucleoredoxin
Transcript NM_022463   
Expression
Putative miRNA Targets on NXN
3'UTR of NXN
(miRNA target sites are highlighted)
>NXN|NM_022463|3'UTR
   1 CGTGGCTCCGGCCTCCTGAGACGTTATTTAAAACTCAGCCTTCTCCTCCTCCCCCTCCTTCCTTCCGCCCTTGGACTTAC
  81 CCAGCGTGCCCCGAATCCCACCACCCAAGTGTCCAGCCTCTCTGTGGTGCCTTGTTTCTGCAGTAAACTCCTCAGCCAGC
 161 ACCCTGGGGTGTGGAATCAGCAGCGGCAGAGTCCACCGTGTTTGGAGACTCTGTTTGGGAGCACGGGATGGCCGGGGGCC
 241 CGGCCAGAGCGGGGCTGCATGGCTTTCGCAAAGTCACTAGCTTTTGGTGAAGGATCTGCCAGGGTGTCCTGGGCAGAGTG
 321 AGCGTGGAGGGCCGGTGGGTCCCGCTCGGGCTCTGACTCTGACGTCGGCACACACGGCCCCGGACGGCCAGAGGGGAACC
 401 GCCGGGTGACACCTGCGTGGAGGCTGAGCTGAGAAAGGGCCTCCGCTTAGAGCTGCGGGTGAGGACGTCCTTTTCTAAGC
 481 AACACAGTCTTCCTCGGTCTGAGAGAAAAGCAGCCCACTCTTGTGTTCTCAGGCAGGGGATCTCCAAATGCAAAAGGAAG
 561 CTTGTAGAGGTTTTTTGGGTGAGAAGAAAAATGTAGCTAAGGTAATGGTTCATATCATACAAACAGCTCCCACGATCCTG
 641 AAATTCTGTTAACGAATCCTTCTCTTTGGACATCTTCCCAAGAAACTTAGCCCTGAGTCCTAGGAGGAGCACCTCTGCAC
 721 CAGCACGGACCTCTCGCTCCACCCAGCTCTGTGCCCAAGGCCCCTGATCTCTGCTGAGGTGCCCACACCCACGTTCGATC
 801 ACCCCTGCCATTCCCTTTTATTTTCTTTTTTTTGAGATGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACCA
 881 TCTTGGCTCACTTCAACCTCCGCCCCCAAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC
 961 ACCCGCCACCGTACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACT
1041 CCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCGCCGTGCCCGGCCCCCTT
1121 TTCTTTTCAAAGCAGAACTACAAAGATGAGAAATTACCAGAAGCCTCGCCTTTTCCTAAGCACCAGCGGAAGGAGCTGTG
1201 CCCCGGGATGGAGTGAGGGTGGAGGGCGCGTCAGCCACGGGTGGGCCTTGTGTCGCCTTGTATCGGCCCAGGTAGGTTGT
1281 TGGCCTCTTACTTGGGCTGACCTGACCCCCGAAAGAGAAACAGACAACTCTGTTCTCAGGATTGGGGATGGACGGCTTCG
1361 GCCAAGCGTTTTAGCCTCATTCACTCAGGCCCCACTCAGCACTCTGCCAGCCAAGACCATTGATTTGGAAAATCCGGTCC
1441 CCACCCGCTAATGAGCTGTTGACACTGTTGTTCCTTGCTGAATTGGATTGTTGACTTGTAGTTCAGAGGCGTACAACTAG
1521 TTGGCGATTAGACTTGTTATGTGATGTTACCAGCCTGAAATGCGATCACCCCGTAGGAAATAAAGCAGGCATCTCTGGAC
1601 CTCATCCACCCTGGGCCTCTGCTGTCCTTGATCACA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acaUGUCGUCCGUGUCUGUcc 5'
             | || ||  |||||||  
Target 5' ccgAAAG-AGAAACAGACAac 3'
1309 - 1328 133.00 -9.60
2
miRNA  3' acauguCGUCCGUGUCUGUCc 5'
                |::  | |||:||| 
Target 5' actcttGTGTTCTCAGGCAGg 3'
517 - 537 127.00 -13.50
3
miRNA  3' acAUGUCGUCCGUGUCUGUCc 5'
            |::| | ||| |||::|| 
Target 5' ctTGTATC-GGCCCAGGTAGg 3'
1257 - 1276 126.00 -16.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN24385803 1 COSMIC
COSN31527378 9 COSMIC
COSN32074251 22 COSMIC
COSN31541775 67 COSMIC
COSN30517589 68 COSMIC
COSN26556614 76 COSMIC
COSN30313537 86 COSMIC
COSN14969800 147 COSMIC
COSN31571010 154 COSMIC
COSN6660449 172 COSMIC
COSN21550641 176 COSMIC
COSN26547736 185 COSMIC
COSN5801335 224 COSMIC
COSN30380944 225 COSMIC
COSN6660448 233 COSMIC
COSN6660445 496 COSMIC
COSN6660444 787 COSMIC
COSN6660440 982 COSMIC
COSN6660439 1004 COSMIC
COSN16689614 1251 COSMIC
COSN26759997 1499 COSMIC
COSN17075899 1563 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs371925679 1 dbSNP
rs779050017 2 dbSNP
rs1182107900 7 dbSNP
rs191862985 8 dbSNP
rs187249999 9 dbSNP
rs375379482 10 dbSNP
rs971669308 13 dbSNP
rs755922734 16 dbSNP
rs752463967 17 dbSNP
rs1229933236 18 dbSNP
rs374090465 22 dbSNP
rs1287640228 23 dbSNP
rs1415397132 30 dbSNP
rs751126271 34 dbSNP
rs1331681126 37 dbSNP
rs765926651 39 dbSNP
rs1385170461 47 dbSNP
rs369781582 49 dbSNP
rs762302415 51 dbSNP
rs774144491 54 dbSNP
rs1034217535 55 dbSNP
rs1255374825 58 dbSNP
rs1485959723 58 dbSNP
rs766391743 66 dbSNP
rs1460750964 67 dbSNP
rs543321885 72 dbSNP
rs554846901 77 dbSNP
rs893242895 78 dbSNP
rs1464100967 81 dbSNP
rs1171491867 83 dbSNP
rs542599658 85 dbSNP
rs1021113228 86 dbSNP
rs1296692316 88 dbSNP
rs73975532 92 dbSNP
rs894033540 93 dbSNP
rs557212395 98 dbSNP
rs1181198422 99 dbSNP
rs1053456786 104 dbSNP
rs932267294 108 dbSNP
rs539097491 114 dbSNP
rs1212899853 115 dbSNP
rs1283863218 120 dbSNP
rs1041227645 122 dbSNP
rs944970730 123 dbSNP
rs571777583 124 dbSNP
rs655377 147 dbSNP
rs1377727476 154 dbSNP
rs773105426 154 dbSNP
rs1436087031 162 dbSNP
rs2474695 172 dbSNP
rs113410443 173 dbSNP
rs1360510281 184 dbSNP
rs747167759 185 dbSNP
rs750886815 187 dbSNP
rs919683128 195 dbSNP
rs1349140807 196 dbSNP
rs1302295850 197 dbSNP
rs973777625 198 dbSNP
rs982557966 203 dbSNP
rs1306990893 211 dbSNP
rs772946192 213 dbSNP
rs747243154 218 dbSNP
rs1262295346 224 dbSNP
rs1487277050 231 dbSNP
rs931245448 232 dbSNP
rs3813434 233 dbSNP
rs1455183190 234 dbSNP
rs549636283 236 dbSNP
rs959669910 238 dbSNP
rs182550458 240 dbSNP
rs531136137 241 dbSNP
rs189879034 242 dbSNP
rs1371548235 249 dbSNP
rs551575671 251 dbSNP
rs532039070 255 dbSNP
rs1250576365 259 dbSNP
rs544541648 262 dbSNP
rs958278181 263 dbSNP
rs540002341 267 dbSNP
rs1454392423 268 dbSNP
rs1319676438 277 dbSNP
rs1243866344 287 dbSNP
rs957170158 295 dbSNP
rs1192030700 300 dbSNP
rs1453990437 301 dbSNP
rs1254078309 304 dbSNP
rs1237053460 305 dbSNP
rs1179443534 311 dbSNP
rs528082112 323 dbSNP
rs185762564 324 dbSNP
rs1166114424 326 dbSNP
rs1420220026 329 dbSNP
rs542887587 333 dbSNP
rs1040697544 334 dbSNP
rs866564206 335 dbSNP
rs1009587083 343 dbSNP
rs376031497 344 dbSNP
rs1395166631 346 dbSNP
rs113894480 347 dbSNP
rs930801479 348 dbSNP
rs1216443800 359 dbSNP
rs899328093 363 dbSNP
rs543379119 364 dbSNP
rs545224897 364 dbSNP
rs577957121 366 dbSNP
rs553421244 367 dbSNP
rs1038158509 370 dbSNP
rs1189034421 373 dbSNP
rs371079682 375 dbSNP
rs1325585533 376 dbSNP
rs376450756 377 dbSNP
rs555498908 381 dbSNP
rs981147231 382 dbSNP
rs879863370 385 dbSNP
rs949723907 385 dbSNP
rs117694087 386 dbSNP
rs1434048717 389 dbSNP
rs1313216812 390 dbSNP
rs567770001 400 dbSNP
rs1174492264 401 dbSNP
rs539206825 403 dbSNP
rs957242641 404 dbSNP
rs913947979 405 dbSNP
rs1215761196 408 dbSNP
rs1275922448 408 dbSNP
rs1312083498 410 dbSNP
rs1372838520 416 dbSNP
rs1194608353 417 dbSNP
rs555978485 428 dbSNP
rs1487503306 431 dbSNP
rs79445458 437 dbSNP
rs1209534449 439 dbSNP
rs1485692019 440 dbSNP
rs1189499909 444 dbSNP
rs1282051867 445 dbSNP
rs1435457861 446 dbSNP
rs1226338639 455 dbSNP
rs1212413084 456 dbSNP
rs1032498653 457 dbSNP
rs752343057 458 dbSNP
rs140665826 465 dbSNP
rs879231259 467 dbSNP
rs1432502791 469 dbSNP
rs666966 481 dbSNP
rs1353497815 483 dbSNP
rs1234454035 485 dbSNP
rs528204451 486 dbSNP
rs1352150209 487 dbSNP
rs889074864 495 dbSNP
rs542927 496 dbSNP
rs995079153 498 dbSNP
rs1448916983 501 dbSNP
rs899357677 503 dbSNP
rs886864094 517 dbSNP
rs1036510950 520 dbSNP
rs1005436472 523 dbSNP
rs551381957 530 dbSNP
rs1437773640 540 dbSNP
rs1157743976 546 dbSNP
rs114441843 581 dbSNP
rs1396302023 583 dbSNP
rs1402284200 586 dbSNP
rs1321164305 590 dbSNP
rs898355461 597 dbSNP
rs1440914143 598 dbSNP
rs1055606307 605 dbSNP
rs751124430 609 dbSNP
rs1238996447 612 dbSNP
rs1045860452 615 dbSNP
rs1416380786 633 dbSNP
rs949751501 634 dbSNP
rs867441311 637 dbSNP
rs915577310 638 dbSNP
rs1055675186 641 dbSNP
rs935908177 642 dbSNP
rs1187800825 644 dbSNP
rs925812452 653 dbSNP
rs530777543 654 dbSNP
rs747938470 656 dbSNP
rs1469086823 672 dbSNP
rs1238667373 674 dbSNP
rs151021321 679 dbSNP
rs949403668 713 dbSNP
rs1436845669 714 dbSNP
rs1180977873 715 dbSNP
rs1364372681 720 dbSNP
rs1273199625 722 dbSNP
rs913897705 726 dbSNP
rs532988729 727 dbSNP
rs1332354705 735 dbSNP
rs545361958 736 dbSNP
rs925461363 737 dbSNP
rs1390365055 741 dbSNP
rs1233794355 749 dbSNP
rs577751293 756 dbSNP
rs911981780 760 dbSNP
rs1293087962 763 dbSNP
rs1356253584 766 dbSNP
rs559312725 779 dbSNP
rs541486639 786 dbSNP
rs540226 787 dbSNP
rs1028985033 789 dbSNP
rs555692204 792 dbSNP
rs963639824 796 dbSNP
rs1251066382 797 dbSNP
rs1439501921 798 dbSNP
rs1185075585 806 dbSNP
rs1256580662 807 dbSNP
rs987457919 815 dbSNP
rs1375627496 820 dbSNP
rs537052599 825 dbSNP
rs1421094186 827 dbSNP
rs1392713131 828 dbSNP
rs1460986161 828 dbSNP
rs1005061198 832 dbSNP
rs778766667 834 dbSNP
rs906656909 836 dbSNP
rs1312853206 838 dbSNP
rs1356483333 839 dbSNP
rs1417076725 840 dbSNP
rs1276539657 844 dbSNP
rs1326076561 846 dbSNP
rs1415400284 848 dbSNP
rs1228168716 850 dbSNP
rs1045526422 851 dbSNP
rs1469121996 854 dbSNP
rs750403404 855 dbSNP
rs1014415381 865 dbSNP
rs1485868091 867 dbSNP
rs898219667 869 dbSNP
rs894174668 887 dbSNP
rs1427580193 888 dbSNP
rs1193226066 889 dbSNP
rs1374263047 893 dbSNP
rs9747754 896 dbSNP
rs1055370181 901 dbSNP
rs935646205 902 dbSNP
rs1436902327 906 dbSNP
rs1296747459 907 dbSNP
rs1384463413 911 dbSNP
rs907026658 931 dbSNP
rs925886111 937 dbSNP
rs1041985286 939 dbSNP
rs11553429 940 dbSNP
rs1348523167 941 dbSNP
rs1222174379 948 dbSNP
rs1212695551 950 dbSNP
rs911706770 957 dbSNP
rs1372643849 961 dbSNP
rs1485445442 961 dbSNP
rs1310330298 962 dbSNP
rs987601885 964 dbSNP
rs1369325963 965 dbSNP
rs953422119 970 dbSNP
rs921984725 971 dbSNP
rs538435 982 dbSNP
rs57785353 993 dbSNP
rs1157185538 999 dbSNP
rs1363549156 1003 dbSNP
rs669578 1004 dbSNP
rs925360007 1007 dbSNP
rs975990953 1010 dbSNP
rs1440174678 1013 dbSNP
rs1326691441 1023 dbSNP
rs1399638351 1024 dbSNP
rs942923059 1025 dbSNP
rs1236366566 1028 dbSNP
rs1455957372 1035 dbSNP
rs1015181325 1036 dbSNP
rs987093210 1044 dbSNP
rs984108739 1051 dbSNP
rs1262057462 1058 dbSNP
rs977716762 1059 dbSNP
rs970957301 1061 dbSNP
rs376490467 1062 dbSNP
rs1469447087 1064 dbSNP
rs1251928269 1067 dbSNP
rs566245558 1068 dbSNP
rs1014029219 1080 dbSNP
rs1194033414 1083 dbSNP
rs1420043265 1095 dbSNP
rs547698755 1096 dbSNP
rs1461152837 1100 dbSNP
rs1034034643 1102 dbSNP
rs999827128 1103 dbSNP
rs534671057 1105 dbSNP
rs1316456371 1106 dbSNP
rs1296384445 1110 dbSNP
rs543260956 1112 dbSNP
rs1391702730 1117 dbSNP
rs1308905608 1122 dbSNP
rs973675221 1129 dbSNP
rs1232265223 1139 dbSNP
rs1346006217 1148 dbSNP
rs36015112 1161 dbSNP
rs962439454 1164 dbSNP
rs1336284318 1165 dbSNP
rs1302863306 1167 dbSNP
rs1251178947 1168 dbSNP
rs1481253054 1169 dbSNP
rs1179280215 1170 dbSNP
rs1387740648 1175 dbSNP
rs945940342 1187 dbSNP
rs890318882 1188 dbSNP
rs1188907839 1190 dbSNP
rs907064666 1191 dbSNP
rs184212801 1196 dbSNP
rs1353809262 1203 dbSNP
rs373384807 1204 dbSNP
rs35171873 1205 dbSNP
rs563306736 1205 dbSNP
rs1413998788 1210 dbSNP
rs891688529 1218 dbSNP
rs1052445362 1221 dbSNP
rs1299514619 1224 dbSNP
rs1294271722 1227 dbSNP
rs973447474 1228 dbSNP
rs191917649 1229 dbSNP
rs1394133424 1230 dbSNP
rs1485549073 1238 dbSNP
rs1259808162 1239 dbSNP
rs775873840 1239 dbSNP
rs1474564150 1240 dbSNP
rs533098921 1241 dbSNP
rs1039826047 1249 dbSNP
rs942758686 1250 dbSNP
rs912747363 1254 dbSNP
rs1417093947 1255 dbSNP
rs559465100 1259 dbSNP
rs1185924292 1261 dbSNP
rs1313272862 1262 dbSNP
rs960751534 1262 dbSNP
rs983751077 1264 dbSNP
rs918800030 1265 dbSNP
rs1265169028 1268 dbSNP
rs971369708 1278 dbSNP
rs1218889192 1279 dbSNP
rs974293370 1294 dbSNP
rs1362024469 1295 dbSNP
rs1215885616 1296 dbSNP
rs1301798393 1299 dbSNP
rs962439105 1306 dbSNP
rs926938118 1310 dbSNP
rs1025201850 1311 dbSNP
rs1215297045 1315 dbSNP
rs1242968987 1319 dbSNP
rs1484708738 1321 dbSNP
rs1486885608 1322 dbSNP
rs971533135 1327 dbSNP
rs990962402 1330 dbSNP
rs1279906427 1331 dbSNP
rs369656064 1342 dbSNP
rs1010041759 1351 dbSNP
rs955945169 1353 dbSNP
rs187088266 1354 dbSNP
rs1214293487 1357 dbSNP
rs1341686641 1359 dbSNP
rs140087498 1360 dbSNP
rs1323340310 1367 dbSNP
rs904217541 1368 dbSNP
rs1040083940 1374 dbSNP
rs1277164314 1375 dbSNP
rs1006987726 1379 dbSNP
rs1020351280 1380 dbSNP
rs891168258 1386 dbSNP
rs1318968224 1387 dbSNP
rs1051207320 1388 dbSNP
rs1252483365 1391 dbSNP
rs1469003548 1402 dbSNP
rs1194171161 1405 dbSNP
rs1248454388 1406 dbSNP
rs1468349808 1409 dbSNP
rs1408202999 1420 dbSNP
rs1009879547 1435 dbSNP
rs890378915 1436 dbSNP
rs1051652583 1441 dbSNP
rs181610146 1444 dbSNP
rs375158220 1446 dbSNP
rs14637 1447 dbSNP
rs543552555 1448 dbSNP
rs1326101624 1458 dbSNP
rs1428822408 1463 dbSNP
rs1441860242 1473 dbSNP
rs942082557 1490 dbSNP
rs1352516814 1491 dbSNP
rs1231662628 1492 dbSNP
rs1272850559 1494 dbSNP
rs1425723725 1499 dbSNP
rs1335545204 1508 dbSNP
rs1185646025 1509 dbSNP
rs907896114 1510 dbSNP
rs576014688 1511 dbSNP
rs557761409 1513 dbSNP
rs949385243 1516 dbSNP
rs569119558 1524 dbSNP
rs1038618060 1525 dbSNP
rs1256856436 1526 dbSNP
rs546451074 1540 dbSNP
rs990993563 1544 dbSNP
rs959564855 1554 dbSNP
rs925440693 1563 dbSNP
rs978505130 1564 dbSNP
rs926997595 1569 dbSNP
rs572655935 1572 dbSNP
rs1484368052 1573 dbSNP
rs1394903926 1577 dbSNP
rs1249769714 1582 dbSNP
rs1409927458 1587 dbSNP
rs968891425 1601 dbSNP
rs1204306053 1608 dbSNP
rs1318977106 1609 dbSNP
rs1280707504 1611 dbSNP
rs971179547 1617 dbSNP
rs1413395100 1619 dbSNP
rs771021636 1622 dbSNP
rs1010322888 1624 dbSNP
rs753475788 1625 dbSNP
rs554292683 1628 dbSNP
rs988559043 1629 dbSNP
rs955895422 1630 dbSNP
rs1338873389 1632 dbSNP
rs1195137617 1636 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acaugucguccgugUCUGUCc 5'
                        |||||| 
Target 5' --------------AGACAGa 3'
1 - 7
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000575801.1 | 3UTR | AGACAGAGUCUCGCUCUGUCGCCCCGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-3120-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT096972 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT442624 LOX lysyl oxidase 2 2
MIRT473438 MDM4 MDM4, p53 regulator 2 2
MIRT490011 KIFC2 kinesin family member C2 2 2
MIRT496449 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496752 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT497721 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT498287 PADI3 peptidyl arginine deiminase 3 2 2
MIRT503195 ACVR1B activin A receptor type 1B 2 4
MIRT504760 TEP1 telomerase associated protein 1 2 4
MIRT517810 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT519686 ZNF622 zinc finger protein 622 2 4
MIRT520263 URGCP upregulator of cell proliferation 2 2
MIRT523051 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT525601 OLR1 oxidized low density lipoprotein receptor 1 2 4
MIRT526995 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528699 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT533142 WNT10A Wnt family member 10A 2 2
MIRT537618 ERI1 exoribonuclease 1 2 2
MIRT539707 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539752 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT539808 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT539941 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT540424 FAM83F family with sequence similarity 83 member F 2 2
MIRT540509 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540720 GUF1 GUF1 homolog, GTPase 2 2
MIRT541630 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT542286 POLR3K RNA polymerase III subunit K 2 2
MIRT542456 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542550 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542771 PPAP2B phospholipid phosphatase 3 2 2
MIRT550085 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT551458 CARKD NAD(P)HX dehydratase 2 2
MIRT555622 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT569136 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT572328 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574607 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT575583 Mcm8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT576125 Hrk harakiri, BCL2 interacting protein (contains only BH3 domain) 2 5
MIRT576657 Fam216a family with sequence similarity 216, member A 2 2
MIRT607222 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607292 CD300E CD300e molecule 2 6
MIRT607746 ANGPT4 angiopoietin 4 2 2
MIRT607905 SPRYD4 SPRY domain containing 4 2 2
MIRT608159 HRK harakiri, BCL2 interacting protein 2 7
MIRT608657 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT609115 ZNF703 zinc finger protein 703 2 6
MIRT610231 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT610870 NUDCD3 NudC domain containing 3 2 2
MIRT611217 MC2R melanocortin 2 receptor 2 2
MIRT614858 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT616966 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT617258 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT618009 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT619067 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619295 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619348 GINM1 glycoprotein integral membrane 1 2 2
MIRT619362 CFHR5 complement factor H related 5 2 2
MIRT619541 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT619782 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT619994 NPAP1 nuclear pore associated protein 1 2 2
MIRT621030 CDC14B cell division cycle 14B 2 2
MIRT622033 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622728 PITPNM3 PITPNM family member 3 2 2
MIRT623144 NAV2 neuron navigator 2 2 2
MIRT623600 IPO9 importin 9 2 2
MIRT624608 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT624905 CTCFL CCCTC-binding factor like 2 2
MIRT625030 SPC24 SPC24, NDC80 kinetochore complex component 2 2
MIRT625688 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 5
MIRT626531 EMCN endomucin 2 2
MIRT627204 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT628033 LSAMP limbic system-associated membrane protein 2 2
MIRT628203 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT631012 LINS lines homolog 1 2 2
MIRT633195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633890 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT634023 MOB4 MOB family member 4, phocein 2 2
MIRT634416 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636866 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT642527 ANKRD9 ankyrin repeat domain 9 2 2
MIRT645408 FAM110A family with sequence similarity 110 member A 2 2
MIRT645635 SYTL4 synaptotagmin like 4 2 2
MIRT646013 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT646686 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT652838 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT655156 PHF21B PHD finger protein 21B 2 2
MIRT658491 EXOC7 exocyst complex component 7 2 2
MIRT659398 CORO2A coronin 2A 2 2
MIRT666825 PRCP prolylcarboxypeptidase 2 2
MIRT666866 POU2F2 POU class 2 homeobox 2 2 2
MIRT668224 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit 2 2
MIRT673288 PDE3A phosphodiesterase 3A 2 2
MIRT673878 KLF2 Kruppel like factor 2 2 2
MIRT681721 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 2
MIRT682406 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT684109 MCM10 minichromosome maintenance 10 replication initiation factor 2 2
MIRT684423 TUFT1 tuftelin 1 2 2
MIRT684684 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT686638 TMEM184C transmembrane protein 184C 2 2
MIRT689457 NXN nucleoredoxin 2 2
MIRT689627 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT690773 PLA2G2C phospholipase A2 group IIC 2 2
MIRT690822 SGSM2 small G protein signaling modulator 2 2 2
MIRT693669 MXRA7 matrix remodeling associated 7 2 2
MIRT695553 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695872 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT698160 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT699933 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT708639 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT710816 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT711242 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT711542 MSH3 mutS homolog 3 2 2
MIRT711749 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712303 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT712922 RPF2 ribosome production factor 2 homolog 2 2
MIRT714027 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714768 TERF1 telomeric repeat binding factor 1 2 2
MIRT714844 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715223 NPVF neuropeptide VF precursor 2 2
MIRT716110 GMPS guanine monophosphate synthase 2 2
MIRT716174 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716383 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT716527 KSR2 kinase suppressor of ras 2 2 2
MIRT716962 P2RY6 pyrimidinergic receptor P2Y6 2 2
MIRT717605 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717696 PTGS1 prostaglandin-endoperoxide synthase 1 2 2
MIRT721360 ENTHD1 ENTH domain containing 1 2 2
MIRT721381 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721935 RASSF2 Ras association domain family member 2 2 2
MIRT722094 SUSD1 sushi domain containing 1 2 2
MIRT722837 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT722990 TOR1A torsin family 1 member A 2 2
MIRT724174 ABCF2 ATP binding cassette subfamily F member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3120-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3120-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-3120-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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