pre-miRNA Information
pre-miRNA hsa-mir-4486   
Genomic Coordinates chr11: 19575310 - 19575372
Description Homo sapiens miR-4486 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4486
Sequence 5| GCUGGGCGAGGCUGGCA |21
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs774299284 8 dbSNP
rs902172817 14 dbSNP
rs1222795726 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PPIL6   
Synonyms PPIase, RSPH12, bA425D10.6, dJ919F19.1
Description peptidylprolyl isomerase like 6
Transcript NM_001111298   
Other Transcripts NM_173672   
Expression
Putative miRNA Targets on PPIL6
3'UTR of PPIL6
(miRNA target sites are highlighted)
>PPIL6|NM_001111298|3'UTR
   1 TTTTCATATCAATATTTTCTGTGATAATTTATTACTTTGTATCTGATCAGCTGTTTGTGGATTTAATTAAAAAGTACTTG
  81 ATAAATTGTAATTTGAAAGCCGTGGCAGACACTGTAGGTTGCCTCATCTACACCCAATCCCTCCCCATCTTCCTTTCCTG
 161 TCTCTGTCATAGAGACTGTGAAAGGGTGGTACTCAATTTCCTAGACTCCTTTGCAGCCACGGGTGGCCATGAGAGATGGT
 241 TCTGGCCAGTGGGACAGGAATAGAACGCCAGTGGTCCTGCCCCTTCCCCTTCATCCAGTCTGGAATGTGGAGAGGCTGGA
 321 GCTACAGCTGTCATCTTGTGGCCATAAAGAAAAGGCTGAGGCCAGGTGTGGTAGCTCACGCCTGTAATCCCAGCACTTGG
 401 GAGGCCGAGGCAGGTGGATCACAAGATCAAGAGATTGAGACCATCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAA
 481 CTACAGAAATTAGCTGGGCATGGTGGCATGCACTTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGAAGAATCTCTTGAA
 561 CCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATGCCGCCACTGCACTCCAGCCTGGCGACAGAGAGAGACTGTCTCAAAAA
 641 AAAAGAAAGGCCAAGTACTGCAGAGATGTCAGCCCCAGTCTCTTGAGCTGCGGGACCAATACCAGCAACCACCTACTCTG
 721 GACTTCTTATTATAGGAGACTAACAGAGCCCTGTGTTGTGTTGTTTATGTTACTGTTGGTTGAGAATTTTGTTACTTGTG
 801 GACAAAAAATTCTTAATTTAGCAACACACCTGATAGCCTAAGACATTTGTAATAGAATTATGTTCTTGTTTGTAACTACA
 881 TGTACTCCTAGGAGAAACTTGGTAAGTAACCAAATAGGAATGATGCAGAAGAAAAAGCAATTCATTGTAATATTTCATTG
 961 TTTATACCAGCATTCAGAAAGAGTATCTACACTTTGGATGTTTTCATATATGACATGAACATCATCCTTATCTCTCTGAG
1041 CCATACCAACCCTATGAAAACCAAGGGCTTGTTTTACAGTGTCCGTGGTGGCTGACTCATGTGATGTTATTGGAGATTCA
1121 GCTTTATCACTACTCTGTAATCTAAAGTTCTCAAGCTCATATCACCTGGGGAGCTTTTAAAATGTAACCTAACAGACCTT
1201 GTCCTTGACCTACTGAGGCAGAGTTCCCAGGCGTGGGGCAGAGATTCTGTGTTCATTTGGTTCTTTCCCCAGGGTTCCCA
1281 GGCGTGGGGCACAGATTCTGTGTTCATTTAGCTCTTTCCCCAGGGTTCCCATTTAGACAGCTGGGCACTAGTCATCTGGG
1361 AATCACTGCAAGACATAAGGAACTGGTTCCAGTCCCCATGGTGTAATGTAGTCAGCAGAGTGCTTGACTCTGCTATTGGT
1441 GACCTTGCTCAGCTCCTGTTACCACCACTACCCTGTGCCCCTGCTCTGCCCAGACTAAGAGTGCTTTTCTTTTTTTTTTT
1521 TTTTTTTTTTTTTTTTTTGAGACGGAATCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCA
1601 AGCTCTGCCTCCCTGATTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCTGCCACCACGCC
1681 TGGCTAATTTTTTGTATTTTTAGTAGAGATGGGATTTCACCATGTTAGCCAGGATGGTCCCGATCTTGTGACCTCGTGAT
1761 CCGCCCGCCTCGGCCTCCCAAAGTGCTGAGATTACAAAGGCGTGAGCCACCGCACCCGGCTGAGAGTGCTTTTCTTACCC
1841 TAAGCAGAATGAGGTTTGTCTTCCAAGAACAATCTCTATTTACATCAGTCTTAAAGAGGCAGGCTTCTAATGGATATGAG
1921 GCTTGCCAAAAGTAGGCGTAGGCTTTTTTAACTTTTTATTTTGAAATATAGATTCACAGGAAGTTGCAAAAATAGTACAG
2001 AGCAGTCCTGTGTACCTTTCACCCATTTTCCCCAGTGGCTACGCTTACAAAACGGTAGTACAATATCAAACCAGGCAGCT
2081 GACATTGGTACAATGTGTGTGATGCCATTTTATCATGAGTATATTCATGTAACCAACACTATAGAGAAAATATAGAACCT
2161 TTCCAGCACCTCAAAGACCCCCTTCCAGTACCCCTTTACAGTCAACCCACTCCCCTGCCCTCTGCCATCCCTAACTCCTG
2241 ACAACTGGCATTTGCTTTTCCTTTTAATGACAGCTTTATTGCTATATGACATATGCTTTATGCTAAGACCTGAGGTGGAT
2321 GGGAGGAAGCAGACCGCCTATGTTACATTCTCAACTGACCCAGAGCAACATAGTGTTAAGAATGTGTGTTCTAGGGCCAG
2401 AATCCTGGCTCTGCCATTCCCTAGCTGCACAAACTCAGGCAAGAACTTTTCTGTGCCTCAATTCCTTCATCTGAGAAACA
2481 GTGGTACCTACCACATAAGATTGCTGTGAGGGTTCCATGAATCAATAATTTCTATAAAGAACCTATAAGAGACCTGGTCT
2561 GCTGTAAGCACTCGATAAATTTAATAATAAATTACTAATGTGTAACCTTCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acGGUCGG--AGCGGGUCg 5'
            :|| :|  |||||||| 
Target 5' tcTCACTCTGTCGCCCAGg 3'
1548 - 1566 149.00 -15.90
2
miRNA  3' acGGUCGGAGCGGGUCg 5'
            || ||: :|||||| 
Target 5' ccCCTGCTCTGCCCAGa 3'
1478 - 1494 139.00 -20.50
3
miRNA  3' acggucGGAGCGGGUCg 5'
                |||:||:||| 
Target 5' tggtgaCCTTGCTCAGc 3'
1437 - 1453 123.00 -20.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26990036 12 COSMIC
COSN31549493 19 COSMIC
COSN31606709 73 COSMIC
COSN30152788 80 COSMIC
COSN17075701 133 COSMIC
COSN5082028 144 COSMIC
COSN2133379 786 COSMIC
COSN21984608 1281 COSMIC
COSN7593547 1519 COSMIC
COSN14783398 1677 COSMIC
COSN9290163 1858 COSMIC
COSN9290162 1937 COSMIC
COSN8397839 2003 COSMIC
COSN2523776 2220 COSMIC
COSN22349403 2314 COSMIC
COSN14877144 2553 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1219879112 7 dbSNP
rs771244312 9 dbSNP
rs749474726 11 dbSNP
rs756155082 12 dbSNP
rs780027876 19 dbSNP
rs1228196927 24 dbSNP
rs199994620 26 dbSNP
rs372208795 29 dbSNP
rs368877007 38 dbSNP
rs1402010130 39 dbSNP
rs757064803 46 dbSNP
rs111849005 49 dbSNP
rs371116357 56 dbSNP
rs1348739588 60 dbSNP
rs912593200 72 dbSNP
rs1279197813 76 dbSNP
rs180994400 77 dbSNP
rs907926260 79 dbSNP
rs1162509014 80 dbSNP
rs987504407 81 dbSNP
rs1425237065 86 dbSNP
rs954714738 88 dbSNP
rs772137399 101 dbSNP
rs745756433 102 dbSNP
rs1404227378 103 dbSNP
rs964281323 104 dbSNP
rs924537518 118 dbSNP
rs75527655 133 dbSNP
rs553228724 135 dbSNP
rs530378434 137 dbSNP
rs1360716714 141 dbSNP
rs1216564652 142 dbSNP
rs12175280 162 dbSNP
rs536533175 164 dbSNP
rs573998015 166 dbSNP
rs1216636956 170 dbSNP
rs1237112365 172 dbSNP
rs1471965589 184 dbSNP
rs959816497 186 dbSNP
rs1481239575 192 dbSNP
rs556891088 202 dbSNP
rs1157952654 203 dbSNP
rs376998107 217 dbSNP
rs753667223 220 dbSNP
rs571283190 221 dbSNP
rs1003646269 224 dbSNP
rs906188271 225 dbSNP
rs1045099991 226 dbSNP
rs1012519893 229 dbSNP
rs1239936659 230 dbSNP
rs1490316508 236 dbSNP
rs551182206 238 dbSNP
rs1224393438 242 dbSNP
rs1278017792 256 dbSNP
rs1440842397 261 dbSNP
rs112479482 266 dbSNP
rs563913148 270 dbSNP
rs1027216912 274 dbSNP
rs907981306 279 dbSNP
rs752154340 289 dbSNP
rs933372332 297 dbSNP
rs766977080 300 dbSNP
rs1325976361 301 dbSNP
rs1158575682 306 dbSNP
rs1214579917 308 dbSNP
rs1031988189 320 dbSNP
rs550480280 321 dbSNP
rs1178111487 328 dbSNP
rs964000185 334 dbSNP
rs565913507 344 dbSNP
rs1290556127 360 dbSNP
rs1329801073 361 dbSNP
rs1337990415 368 dbSNP
rs1443566342 372 dbSNP
rs1428618531 377 dbSNP
rs1274291199 379 dbSNP
rs1039788699 380 dbSNP
rs1263987380 383 dbSNP
rs989311021 397 dbSNP
rs549201630 406 dbSNP
rs1470727359 407 dbSNP
rs533697420 408 dbSNP
rs1439454084 413 dbSNP
rs1008689502 439 dbSNP
rs891220070 445 dbSNP
rs375409791 451 dbSNP
rs370536665 454 dbSNP
rs372125148 456 dbSNP
rs368254748 457 dbSNP
rs1479150381 462 dbSNP
rs1052836547 466 dbSNP
rs1429535748 480 dbSNP
rs956522644 494 dbSNP
rs1168895693 506 dbSNP
rs1030738272 515 dbSNP
rs1410970802 528 dbSNP
rs1003310436 544 dbSNP
rs1175016871 552 dbSNP
rs529511352 558 dbSNP
rs1477866115 563 dbSNP
rs1421111356 564 dbSNP
rs1284018284 569 dbSNP
rs1340045490 570 dbSNP
rs563830066 571 dbSNP
rs1474741805 577 dbSNP
rs935339226 586 dbSNP
rs1341189562 587 dbSNP
rs1241861198 595 dbSNP
rs550107237 596 dbSNP
rs1043025353 597 dbSNP
rs1289051539 601 dbSNP
rs970861897 604 dbSNP
rs1200883284 607 dbSNP
rs1268979831 611 dbSNP
rs947198239 616 dbSNP
rs772368862 617 dbSNP
rs991343982 620 dbSNP
rs1203346753 624 dbSNP
rs28565908 627 dbSNP
rs28502500 628 dbSNP
rs869108501 628 dbSNP
rs397801149 629 dbSNP
rs748597121 629 dbSNP
rs386408220 630 dbSNP
rs3054660 631 dbSNP
rs960027074 631 dbSNP
rs1398286278 633 dbSNP
rs1297951244 636 dbSNP
rs879358249 645 dbSNP
rs1212701739 648 dbSNP
rs1227868447 649 dbSNP
rs1283394735 650 dbSNP
rs112238671 653 dbSNP
rs1357106683 657 dbSNP
rs1361220073 660 dbSNP
rs899450834 664 dbSNP
rs1016524398 677 dbSNP
rs1315414093 678 dbSNP
rs928421336 681 dbSNP
rs75105987 691 dbSNP
rs572753035 692 dbSNP
rs1335672988 693 dbSNP
rs1383813839 694 dbSNP
rs1446923771 698 dbSNP
rs541514119 702 dbSNP
rs559395809 709 dbSNP
rs1380273603 713 dbSNP
rs933423334 718 dbSNP
rs900549177 728 dbSNP
rs736830 730 dbSNP
rs773611569 733 dbSNP
rs947387012 737 dbSNP
rs141215918 739 dbSNP
rs1390128598 742 dbSNP
rs1018825271 752 dbSNP
rs1008410295 755 dbSNP
rs1352972479 758 dbSNP
rs1236183315 762 dbSNP
rs138563921 763 dbSNP
rs1184520192 765 dbSNP
rs144622835 767 dbSNP
rs1199548963 768 dbSNP
rs1240945541 775 dbSNP
rs1462913807 778 dbSNP
rs935221640 785 dbSNP
rs1238085661 810 dbSNP
rs1031110319 811 dbSNP
rs999516116 814 dbSNP
rs1183202090 833 dbSNP
rs903891423 836 dbSNP
rs1465687516 839 dbSNP
rs1174519272 844 dbSNP
rs982314837 847 dbSNP
rs1454365251 849 dbSNP
rs970511632 855 dbSNP
rs1372446763 876 dbSNP
rs556986396 881 dbSNP
rs932409887 885 dbSNP
rs1253107741 891 dbSNP
rs990540471 901 dbSNP
rs963025604 915 dbSNP
rs1042994386 928 dbSNP
rs947250603 936 dbSNP
rs1202548674 941 dbSNP
rs537395925 949 dbSNP
rs1325311406 953 dbSNP
rs1204640878 983 dbSNP
rs1015907090 990 dbSNP
rs1479920426 992 dbSNP
rs577566184 995 dbSNP
rs1056009208 996 dbSNP
rs1432635842 997 dbSNP
rs190538366 998 dbSNP
rs375422000 999 dbSNP
rs1431647915 1000 dbSNP
rs73531318 1013 dbSNP
rs556762270 1021 dbSNP
rs929641756 1027 dbSNP
rs1353732685 1031 dbSNP
rs1460320867 1035 dbSNP
rs1299786312 1037 dbSNP
rs919554277 1045 dbSNP
rs900622646 1046 dbSNP
rs973717887 1051 dbSNP
rs964616367 1066 dbSNP
rs11756093 1084 dbSNP
rs935254188 1088 dbSNP
rs1207116174 1089 dbSNP
rs1461057734 1096 dbSNP
rs1488448046 1099 dbSNP
rs1220262188 1101 dbSNP
rs1365728873 1101 dbSNP
rs1271179539 1103 dbSNP
rs776602261 1108 dbSNP
rs1480857046 1115 dbSNP
rs369791861 1118 dbSNP
rs1193185030 1122 dbSNP
rs185739021 1123 dbSNP
rs1426509722 1133 dbSNP
rs982001741 1134 dbSNP
rs955597488 1155 dbSNP
rs1031086237 1158 dbSNP
rs949240103 1159 dbSNP
rs1427160858 1164 dbSNP
rs999652184 1166 dbSNP
rs1269199085 1171 dbSNP
rs1359515842 1172 dbSNP
rs1216676808 1173 dbSNP
rs73762717 1176 dbSNP
rs963098999 1197 dbSNP
rs1164551241 1198 dbSNP
rs1022336718 1204 dbSNP
rs1244448660 1211 dbSNP
rs1015939747 1227 dbSNP
rs1012238450 1231 dbSNP
rs570270833 1232 dbSNP
rs774501578 1233 dbSNP
rs1252940237 1234 dbSNP
rs1486982466 1240 dbSNP
rs1175485850 1250 dbSNP
rs997716403 1259 dbSNP
rs550202578 1260 dbSNP
rs938522285 1261 dbSNP
rs1011637325 1267 dbSNP
rs561572967 1268 dbSNP
rs1424740126 1275 dbSNP
rs906997455 1282 dbSNP
rs181792521 1283 dbSNP
rs75818810 1284 dbSNP
rs746794 1292 dbSNP
rs1289767391 1298 dbSNP
rs1382468297 1298 dbSNP
rs1360862658 1300 dbSNP
rs1450962138 1300 dbSNP
rs1223231041 1301 dbSNP
rs1282258870 1312 dbSNP
rs973732456 1315 dbSNP
rs755755649 1319 dbSNP
rs544817726 1320 dbSNP
rs368545912 1323 dbSNP
rs867143157 1324 dbSNP
rs902469075 1334 dbSNP
rs1237171387 1336 dbSNP
rs1304405586 1337 dbSNP
rs1046727805 1341 dbSNP
rs1390518086 1342 dbSNP
rs1244879801 1347 dbSNP
rs1445180847 1348 dbSNP
rs1157441306 1356 dbSNP
rs1405192408 1364 dbSNP
rs955728942 1373 dbSNP
rs916417677 1376 dbSNP
rs1404982629 1381 dbSNP
rs1345570019 1383 dbSNP
rs1339115249 1393 dbSNP
rs527755884 1401 dbSNP
rs978244793 1402 dbSNP
rs1277805325 1408 dbSNP
rs968150187 1410 dbSNP
rs1224446601 1418 dbSNP
rs189104075 1432 dbSNP
rs747787360 1441 dbSNP
rs1293240645 1455 dbSNP
rs1454631830 1463 dbSNP
rs1321744546 1467 dbSNP
rs1364811777 1472 dbSNP
rs941768161 1475 dbSNP
rs1264806233 1480 dbSNP
rs959368836 1482 dbSNP
rs908951512 1483 dbSNP
rs1034683471 1499 dbSNP
rs1180969953 1499 dbSNP
rs1157181908 1503 dbSNP
rs1472417547 1504 dbSNP
rs1430044763 1507 dbSNP
rs1177331529 1508 dbSNP
rs201299678 1509 dbSNP
rs573638907 1510 dbSNP
rs1407332971 1513 dbSNP
rs1409805251 1514 dbSNP
rs1489825755 1515 dbSNP
rs1002832069 1518 dbSNP
rs1282743517 1520 dbSNP
rs1343800959 1520 dbSNP
rs1205436814 1521 dbSNP
rs923575445 1522 dbSNP
rs1284222282 1523 dbSNP
rs907106839 1525 dbSNP
rs1195076978 1526 dbSNP
rs1258793388 1527 dbSNP
rs1237840324 1530 dbSNP
rs1323851697 1531 dbSNP
rs1284586721 1536 dbSNP
rs1166579528 1539 dbSNP
rs1205163800 1539 dbSNP
rs1224163791 1539 dbSNP
rs1226343274 1539 dbSNP
rs1267600504 1539 dbSNP
rs1268199923 1539 dbSNP
rs1302574114 1539 dbSNP
rs1303976242 1539 dbSNP
rs1326126866 1539 dbSNP
rs1341333998 1539 dbSNP
rs1363764366 1539 dbSNP
rs1377886866 1539 dbSNP
rs1399190490 1539 dbSNP
rs1406885198 1539 dbSNP
rs1411021289 1539 dbSNP
rs1475290316 1539 dbSNP
rs1479226773 1539 dbSNP
rs1489621981 1539 dbSNP
rs60069816 1539 dbSNP
rs760299890 1539 dbSNP
rs1221164671 1540 dbSNP
rs1267597747 1540 dbSNP
rs1446081509 1541 dbSNP
rs542804848 1543 dbSNP
rs1450532893 1544 dbSNP
rs866841545 1544 dbSNP
rs1383330089 1552 dbSNP
rs1163471768 1555 dbSNP
rs1383996638 1559 dbSNP
rs1387569977 1559 dbSNP
rs1164305864 1560 dbSNP
rs568138301 1567 dbSNP
rs1380772286 1568 dbSNP
rs1315907001 1575 dbSNP
rs1327961947 1577 dbSNP
rs140776093 1581 dbSNP
rs1407142419 1585 dbSNP
rs375714028 1589 dbSNP
rs1247460698 1590 dbSNP
rs1265518404 1599 dbSNP
rs1349455047 1625 dbSNP
rs964968900 1638 dbSNP
rs1479501269 1645 dbSNP
rs1183425583 1646 dbSNP
rs1241773670 1654 dbSNP
rs535609340 1661 dbSNP
rs898267239 1665 dbSNP
rs1038054821 1666 dbSNP
rs942367107 1669 dbSNP
rs113844482 1677 dbSNP
rs1363320335 1678 dbSNP
rs1051196854 1680 dbSNP
rs577903661 1683 dbSNP
rs1207896025 1694 dbSNP
rs1160485550 1706 dbSNP
rs1389751919 1709 dbSNP
rs1469993366 1710 dbSNP
rs1335857392 1713 dbSNP
rs1380408817 1720 dbSNP
rs924173277 1722 dbSNP
rs1312749796 1723 dbSNP
rs1334629695 1730 dbSNP
rs978275806 1740 dbSNP
rs957486118 1741 dbSNP
rs13219952 1742 dbSNP
rs1329445725 1754 dbSNP
rs1203356740 1755 dbSNP
rs998836945 1756 dbSNP
rs1463005499 1758 dbSNP
rs183981035 1762 dbSNP
rs990881127 1763 dbSNP
rs959719015 1766 dbSNP
rs867675618 1767 dbSNP
rs1412901561 1769 dbSNP
rs1035061966 1771 dbSNP
rs1003940844 1772 dbSNP
rs1045707725 1789 dbSNP
rs1303354154 1791 dbSNP
rs1389116521 1792 dbSNP
rs1395755512 1792 dbSNP
rs1289681554 1793 dbSNP
rs1270321063 1796 dbSNP
rs1350680422 1799 dbSNP
rs1228760463 1802 dbSNP
rs1281030710 1803 dbSNP
rs971311495 1804 dbSNP
rs1025492129 1805 dbSNP
rs1326067236 1807 dbSNP
rs575953069 1811 dbSNP
rs116649199 1812 dbSNP
rs1054998759 1813 dbSNP
rs941838501 1814 dbSNP
rs1038528769 1815 dbSNP
rs750754691 1818 dbSNP
rs908984070 1821 dbSNP
rs1383718881 1824 dbSNP
rs546653881 1827 dbSNP
rs765594509 1827 dbSNP
rs1460430554 1829 dbSNP
rs922949179 1841 dbSNP
rs975736671 1847 dbSNP
rs889523161 1854 dbSNP
rs1300902058 1870 dbSNP
rs1401545181 1877 dbSNP
rs1168598935 1882 dbSNP
rs1220124539 1883 dbSNP
rs1050809596 1894 dbSNP
rs1295313622 1896 dbSNP
rs1306229714 1896 dbSNP
rs143399008 1903 dbSNP
rs990317907 1910 dbSNP
rs957517067 1920 dbSNP
rs1371276263 1932 dbSNP
rs924204345 1936 dbSNP
rs543977059 1937 dbSNP
rs977493256 1938 dbSNP
rs1191511199 1956 dbSNP
rs761958943 1966 dbSNP
rs946871184 1969 dbSNP
rs570127504 1972 dbSNP
rs1170376378 1975 dbSNP
rs1012911211 1977 dbSNP
rs1181347465 1979 dbSNP
rs1161152908 2007 dbSNP
rs1423442562 2007 dbSNP
rs1351195831 2009 dbSNP
rs1288606172 2015 dbSNP
rs114880763 2022 dbSNP
rs991389001 2026 dbSNP
rs3757236 2027 dbSNP
rs887622017 2032 dbSNP
rs928019568 2046 dbSNP
rs116787590 2053 dbSNP
rs1292155150 2054 dbSNP
rs1322500481 2058 dbSNP
rs547764600 2063 dbSNP
rs1215297079 2074 dbSNP
rs1273116574 2089 dbSNP
rs1025523186 2094 dbSNP
rs929052892 2098 dbSNP
rs972583616 2116 dbSNP
rs1360588707 2119 dbSNP
rs775657310 2136 dbSNP
rs770781377 2142 dbSNP
rs1248510786 2144 dbSNP
rs1016799194 2145 dbSNP
rs1007120656 2151 dbSNP
rs889563368 2153 dbSNP
rs1029799477 2157 dbSNP
rs1459099964 2167 dbSNP
rs1321648658 2168 dbSNP
rs540307010 2174 dbSNP
rs1340115497 2181 dbSNP
rs1451119650 2185 dbSNP
rs3757235 2188 dbSNP
rs1379944657 2189 dbSNP
rs1223353617 2192 dbSNP
rs943047274 2196 dbSNP
rs773572255 2197 dbSNP
rs1323484082 2201 dbSNP
rs1331506393 2201 dbSNP
rs1210295062 2212 dbSNP
rs191856102 2215 dbSNP
rs1268566506 2216 dbSNP
rs902141671 2220 dbSNP
rs772904877 2231 dbSNP
rs1042074583 2239 dbSNP
rs1394505089 2241 dbSNP
rs946987061 2246 dbSNP
rs1472839351 2247 dbSNP
rs894036417 2249 dbSNP
rs1386828256 2268 dbSNP
rs548701346 2290 dbSNP
rs528596326 2295 dbSNP
rs1160299990 2314 dbSNP
rs924784589 2326 dbSNP
rs1468603561 2329 dbSNP
rs531863202 2331 dbSNP
rs542682840 2332 dbSNP
rs1441498006 2333 dbSNP
rs977582735 2335 dbSNP
rs573372482 2336 dbSNP
rs991920027 2340 dbSNP
rs929309853 2341 dbSNP
rs563322502 2342 dbSNP
rs1006158995 2343 dbSNP
rs973366136 2352 dbSNP
rs1249011705 2355 dbSNP
rs1483776433 2363 dbSNP
rs1294336230 2369 dbSNP
rs1026162471 2371 dbSNP
rs1226973780 2374 dbSNP
rs993338526 2375 dbSNP
rs1280353802 2383 dbSNP
rs1174695009 2393 dbSNP
rs1426410379 2395 dbSNP
rs962628843 2398 dbSNP
rs1326886300 2405 dbSNP
rs1372460935 2407 dbSNP
rs186664225 2410 dbSNP
rs1241516189 2412 dbSNP
rs1343935888 2413 dbSNP
rs1017243552 2420 dbSNP
rs985326738 2424 dbSNP
rs76165387 2426 dbSNP
rs1029417932 2448 dbSNP
rs1367397650 2449 dbSNP
rs888795969 2450 dbSNP
rs1404559562 2459 dbSNP
rs762161116 2466 dbSNP
rs997976255 2483 dbSNP
rs902257317 2487 dbSNP
rs879072867 2495 dbSNP
rs772583875 2507 dbSNP
rs28472629 2509 dbSNP
rs1010557835 2518 dbSNP
rs894075430 2525 dbSNP
rs780887831 2526 dbSNP
rs1055756130 2527 dbSNP
rs1475320720 2530 dbSNP
rs867314402 2534 dbSNP
rs1167228189 2542 dbSNP
rs938200307 2545 dbSNP
rs906653614 2551 dbSNP
rs58535912 2553 dbSNP
rs1430475787 2556 dbSNP
rs1163011937 2558 dbSNP
rs1363900031 2559 dbSNP
rs1388765195 2571 dbSNP
rs924858180 2573 dbSNP
rs929424385 2574 dbSNP
rs540966850 2576 dbSNP
rs571704227 2577 dbSNP
rs942009674 2579 dbSNP
rs12665349 2580 dbSNP
rs1228411039 2582 dbSNP
rs991600174 2594 dbSNP
rs1271689986 2595 dbSNP
rs1220090482 2600 dbSNP
rs1290196851 2600 dbSNP
rs958753960 2600 dbSNP
rs746535314 2602 dbSNP
rs985744253 2604 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acggucggAGCGGGUCg 5'
                  |||||||| 
Target 5' --------UCGCCCAGg 3'
1 - 9
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_173672 | 3UTR | CUCACUCUGUCGCCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_173672 | 3UTR | CUCACUCUGUCGCCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001111298 | 3UTR | UUUGAGACGGAAUCUCACUCUGUCGCCCAGGCUGGAGUGCAGUGGCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001111298 | 3UTR | UUUUGAGACGGAAUCUCACUCUGUCGCCCAGGCUGGAGUGCAGUGGCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001111298 | 3UTR | AGACGGAAUCUCACUCUGUCGCCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001111298 | 3UTR | UUGAGACGGAAUCUCACUCUGUCGCCCAGGCUGGAGUGCAGUGGCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001111298 | 3UTR | AGACGGAAUCUCACUCUGUCGCCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001111298 | 3UTR | UUUUGAGACGGAAUCUCACUCUGUCGCCCAGGCUGGAGUGCAGUGGCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000521072.2 | 3UTR | UCGCCCAGGCUGGAGUGCAGUGGCACAAUCUCGGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
108 hsa-miR-4486 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT254654 NF2 neurofibromin 2 2 2
MIRT458684 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT470845 PLXND1 plexin D1 2 2
MIRT493011 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT497264 GRK6 G protein-coupled receptor kinase 6 2 2
MIRT497675 SYNGR1 synaptogyrin 1 2 2
MIRT498219 TLN2 talin 2 2 2
MIRT498310 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT504048 TOMM5 translocase of outer mitochondrial membrane 5 2 2
MIRT519959 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT531521 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT533144 WNT10A Wnt family member 10A 2 2
MIRT533541 TPR translocated promoter region, nuclear basket protein 2 2
MIRT533681 TMEM86A transmembrane protein 86A 2 2
MIRT540321 PIGR polymeric immunoglobulin receptor 2 2
MIRT540719 GUF1 GUF1 homolog, GTPase 2 2
MIRT541566 ZNF43 zinc finger protein 43 2 4
MIRT541787 TBCCD1 TBCC domain containing 1 2 2
MIRT541925 ORC1 origin recognition complex subunit 1 2 4
MIRT542232 FUT9 fucosyltransferase 9 2 2
MIRT542285 POLR3K RNA polymerase III subunit K 2 2
MIRT542299 QTRTD1 queuine tRNA-ribosyltransferase accessory subunit 2 2 4
MIRT542368 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542441 C3 complement C3 2 4
MIRT542475 APOC3 apolipoprotein C3 2 2
MIRT542535 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542640 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542788 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT552104 PPP1R1A protein phosphatase 1 regulatory inhibitor subunit 1A 2 2
MIRT564913 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 2
MIRT568606 ACVR2A activin A receptor type 2A 2 2
MIRT607389 LANCL3 LanC like 3 2 2
MIRT607451 ZNF543 zinc finger protein 543 2 2
MIRT610058 MYBPC1 myosin binding protein C, slow type 2 2
MIRT610793 KLK2 kallikrein related peptidase 2 2 2
MIRT617176 GOSR2 golgi SNAP receptor complex member 2 2 2
MIRT620579 WBSCR27 methyltransferase like 27 2 4
MIRT622085 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622542 PXMP4 peroxisomal membrane protein 4 2 2
MIRT630009 PDE6B phosphodiesterase 6B 2 2
MIRT631813 PTDSS2 phosphatidylserine synthase 2 2 2
MIRT632721 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT632757 MED28 mediator complex subunit 28 2 2
MIRT634821 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT635255 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT637082 SELPLG selectin P ligand 2 2
MIRT637357 ZNF460 zinc finger protein 460 2 2
MIRT637472 DEFB105B defensin beta 105B 2 4
MIRT637504 DEFB105A defensin beta 105A 2 4
MIRT639022 AAK1 AP2 associated kinase 1 2 2
MIRT641012 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT642170 HEBP2 heme binding protein 2 2 2
MIRT648977 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT650515 UFM1 ubiquitin fold modifier 1 2 2
MIRT650949 INMT indolethylamine N-methyltransferase 2 2
MIRT658354 FAM65B RHO family interacting cell polarization regulator 2 2 2
MIRT660736 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT662191 MEI1 meiotic double-stranded break formation protein 1 2 2
MIRT663045 SLC16A4 solute carrier family 16 member 4 2 2
MIRT664811 IRAK3 interleukin 1 receptor associated kinase 3 2 2
MIRT665161 SF3A1 splicing factor 3a subunit 1 2 4
MIRT665346 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT666493 SBNO1 strawberry notch homolog 1 2 2
MIRT666545 RNF115 ring finger protein 115 2 2
MIRT669351 BMP3 bone morphogenetic protein 3 2 2
MIRT669904 KIAA0754 KIAA0754 2 4
MIRT670323 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670430 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT670672 KIAA1551 KIAA1551 2 2
MIRT670746 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670998 PTGIS prostaglandin I2 synthase 2 2
MIRT671290 RPL37A ribosomal protein L37a 2 2
MIRT671469 AGPAT6 glycerol-3-phosphate acyltransferase 4 2 2
MIRT671833 STIL STIL, centriolar assembly protein 2 2
MIRT673006 TAF1 TATA-box binding protein associated factor 1 2 2
MIRT675881 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT678625 OLFML2A olfactomedin like 2A 2 2
MIRT678790 NUPL2 nucleoporin like 2 2 2
MIRT679560 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT681032 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT682480 LIX1L limb and CNS expressed 1 like 2 2
MIRT682758 MDM2 MDM2 proto-oncogene 2 2
MIRT682810 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682867 C9orf156 tRNA methyltransferase O 2 2
MIRT689233 RPS19 ribosomal protein S19 2 2
MIRT689305 C5AR2 complement component 5a receptor 2 2 2
MIRT689363 ZNF101 zinc finger protein 101 2 2
MIRT689629 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT689654 RBM23 RNA binding motif protein 23 2 2
MIRT690148 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT691407 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT691847 OSCAR osteoclast associated, immunoglobulin-like receptor 2 2
MIRT692234 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT694320 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694365 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT696215 LYZ lysozyme 2 2
MIRT697230 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT700487 PTPRF protein tyrosine phosphatase, receptor type F 2 2
MIRT700612 PRKCA protein kinase C alpha 2 2
MIRT702456 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702990 HERPUD2 HERPUD family member 2 2 2
MIRT703998 EIF5A2 eukaryotic translation initiation factor 5A2 2 2
MIRT704701 CHRFAM7A CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion 2 2
MIRT712481 FSTL3 follistatin like 3 2 2
MIRT712781 ZNF154 zinc finger protein 154 2 2
MIRT714369 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT722570 C1orf95 stum, mechanosensory transduction mediator homolog 2 2
MIRT722839 C17orf102 chromosome 17 open reading frame 102 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4486 Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-4486 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-4486 Doxorubicin 31703 NSC123127 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-4486 Curcumin 969516 NSC32982 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-4486 Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4486 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-4486 Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-4486 Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-miR-4486 Cisplatin 5460033 NSC119875 approved sensitive Low Gastric Cancer cell line (SGC-7901)
hsa-mir-4486 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4486 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4486 Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-4486 Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4486 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-4486 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-4486 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4486 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-4486 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)

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