pre-miRNA Information
pre-miRNA hsa-mir-873   
Genomic Coordinates chr9: 28888879 - 28888955
Synonyms MIRN873, hsa-mir-873, MIR873
Description Homo sapiens miR-873 stem-loop
Comment This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-873-3p
Sequence 46| GGAGACUGAUGAGUUCCCGGGA |67
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs760528397 3 dbSNP
rs773403294 9 dbSNP
rs1273846238 13 dbSNP
rs1339396073 15 dbSNP
rs1247999695 18 dbSNP
rs377380148 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TRAPPC2   
Synonyms MIP2A, SEDL, SEDT, TRAPPC2P1, TRS20, ZNF547L, hYP38334
Description trafficking protein particle complex 2
Transcript NM_001011658   
Other Transcripts NM_001128835 , NM_014563   
Expression
Putative miRNA Targets on TRAPPC2
3'UTR of TRAPPC2
(miRNA target sites are highlighted)
>TRAPPC2|NM_001011658|3'UTR
   1 ATGCAGAAAATTCCAAAATAAATGATGTCACCACAATGGTGTATACTCAGGAATGTGTACATTGTAAGTTACTTGATTAA
  81 ATAGCCTGGAAAACTTTTGTGTATTCTCAGCTTATCTAAACCTAATGAAATTCCTTTTATATTTAAAAATAGTACATTCT
 161 GTCTCATGTCACGTATCAATAGATCAATTGGTATTTCCTTGTGAACAGTGTTATTTATAAAGAGTTCATTATCAATAATC
 241 ATGTTTTTTTTTTTTTTTTTTTTCTGATACAGAGTCTCACTCTGTTGCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTC
 321 ACTGCAACCTCCGCCTCCCAGGTTCAGGCGATTCTCCTGCCTCAGCCTCCAAGTAGCTGGGACTACAGGCGCGTGCCACC
 401 ACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATATTGGTCAGGCTGGTCTTGAACTCCTGACCTCG
 481 TGATCTGCCCGCCTTGGCCTCCCAAAGTACTGGGATTACAGGCGTGAGCCACCGTGCCCAACCATGAAATATTTTTACTT
 561 AAAAATTGGGAATAAGCTCGCTTTTTTTTTTTTTGAGATGGAGTCTTGCTCCTGTTGTGCAGGCTGTAGTGCAGTGGCAC
 641 GATCTTGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCTTCTTCAGCCTCCCGAGTAGCTGAGATTATAG
 721 GCGTGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATATTGGTCAGGCTGGTCTTGAA
 801 CTCCTGACCTCGTGATCCACCCACCTCAGGAAGTGCTGGGATTACAGGCGTGTGAGCCACCACGCCCGGCCATGAAATAT
 881 TTTTACTTAAAAATTGGGAATAAGCTTTTTGGTTTTTTGTGGGTTTTTGTTTTTGTTTTTTGTTTTTTGTTTTTTTGAGA
 961 TGGAGTCTTGCTCCTGTTGTGCAGGCTGGAGTGCAGTGGCACAGTCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAA
1041 GCAATTCTCCTTCTTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCACCACACCTGGCTAATTTTTGTGTTTTTA
1121 GTAGAGACGGGGTTTCGCTATTTTGGCCGGGCTGGTTTCAAACTCCTGACCTCAGTTGATCCACCCGCCTCAGCCTCCCA
1201 AAGTGCTAGGATTACAGGCATGAACCACCGTGCCCGGCCAGGAATAAGCTTTTGACTTACCCAATTCAGATAGGTTGATC
1281 TTTGGGGTTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTGTTGTCCAGGCTGGAGTGCAATGGCAGTTGTTTCACCGT
1361 AACCTCTGCCTCCTGACTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGC
1441 CCGGCCCAGATAGGTTGATCTTAATGTAACAACCCAAAAATAAATGTCATAGTCAAGATTTGGTAGATAAATTTAAAATT
1521 AAAATATTCTGCAGTTGGGAGTGAAATGTGATAGCACATACGTTGACATTATGCATTTAGAGATGTTATAAAAATGTATA
1601 GGCAGTATACACAGCACTACTCAAGAAGCCAAAGAAACACTTGTGCAGTGCTAAGTGTCACATGTCTGCTTCCACCAGAG
1681 GCTAGGAATAGTGATCCTGCTATAATGTGAGAACCCAAATCATGTTTATAAAATAGGACGCTGGGAGCAGTTGCAGGCCA
1761 CAGTGAAGTGTGTTGCTTCTGTCACTTTATATTCTTATATTTCCTTTCCCTCAGACAGTAAACTGTTGATACTCGTACTT
1841 GTAAAAAATTGTAAGGCAATTTTTAGTATTGTTGTCAAAGAAAAGCTTGGATTACATTAACATTTGTATTCAGTCTTTTA
1921 GGTGATACACCAGAGGGGGCTGGGAATTGTCTCTTTGTTCCTATAAGTAGATCTTAATGTAAAATAGTAAATGTCCATTG
2001 AAAAGCAAGTAATACAGCCTGTGCTAATTGGGAGCACTTGAACAATTTTGTTCCATTCTGAGTAACTTTTGAGCAAGTAA
2081 TTCTAAGCTTTGTCTTGTATCCTTGTGTGAAATTGCATAATTTTTACCCTATTTGATTTCTTAAATAAAGATGTTTGCTC
2161 AAGATAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggGCCCUUGAGU-A----GUCAGAGg 5'
             | |||:: || |    ||||||: 
Target 5' aggCTGGAGTGCAGTGGCACAGTCTTg 3'
983 - 1009 133.00 -13.00
2
miRNA  3' agggcccuUGAGU---AGUCAGAGg 5'
                  |:|::   |||||||: 
Target 5' acattaacATTTGTATTCAGTCTTt 3'
1894 - 1918 130.00 -8.60
3
miRNA  3' agggcccuuGAGUAGUCAGAGg 5'
                   :|| |||| ||| 
Target 5' caattctccTTCTTCAGCCTCc 3'
680 - 701 121.00 -12.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1203558 29 ClinVar
367995 179 ClinVar
912340 187 ClinVar
367994 243 ClinVar
912339 263 ClinVar
1178039 264 ClinVar
1187067 264 ClinVar
367993 264 ClinVar
367992 267 ClinVar
912338 302 ClinVar
912337 308 ClinVar
367991 323 ClinVar
915066 332 ClinVar
915065 333 ClinVar
367990 393 ClinVar
367989 394 ClinVar
367988 435 ClinVar
367987 465 ClinVar
367986 490 ClinVar
914539 522 ClinVar
914538 546 ClinVar
367985 641 ClinVar
914537 670 ClinVar
914536 690 ClinVar
367984 703 ClinVar
914535 709 ClinVar
367983 710 ClinVar
913424 712 ClinVar
367982 752 ClinVar
367981 830 ClinVar
367980 849 ClinVar
913423 867 ClinVar
367979 942 ClinVar
913422 949 ClinVar
367976 957 ClinVar
367977 957 ClinVar
367978 957 ClinVar
367975 958 ClinVar
913063 989 ClinVar
913062 1032 ClinVar
367974 1050 ClinVar
367973 1052 ClinVar
913061 1128 ClinVar
367972 1191 ClinVar
367971 1229 ClinVar
913060 1287 ClinVar
915023 1288 ClinVar
367970 1304 ClinVar
915021 1436 ClinVar
915022 1436 ClinVar
915020 1442 ClinVar
915019 1443 ClinVar
915018 1486 ClinVar
367969 1599 ClinVar
915017 1634 ClinVar
367968 1739 ClinVar
367967 1849 ClinVar
914500 1963 ClinVar
367966 2035 ClinVar
367965 2060 ClinVar
367964 2110 ClinVar
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1424449402 3 dbSNP
rs1419745276 4 dbSNP
rs768680616 13 dbSNP
rs1474253260 19 dbSNP
rs146231075 29 dbSNP
rs369102520 41 dbSNP
rs901009271 44 dbSNP
rs1490802453 48 dbSNP
rs1274410269 54 dbSNP
rs756953417 56 dbSNP
rs1036843078 68 dbSNP
rs1192209568 74 dbSNP
rs939946129 82 dbSNP
rs370024078 84 dbSNP
rs909785019 90 dbSNP
rs1192484725 98 dbSNP
rs1371407270 99 dbSNP
rs1476470403 115 dbSNP
rs1168412027 148 dbSNP
rs984550398 150 dbSNP
rs1459649846 154 dbSNP
rs1327706004 167 dbSNP
rs113885396 168 dbSNP
rs1392949014 172 dbSNP
rs185982935 173 dbSNP
rs926593303 175 dbSNP
rs938009151 175 dbSNP
rs1057515796 179 dbSNP
rs1227595073 184 dbSNP
rs1427810998 187 dbSNP
rs180933515 188 dbSNP
rs1377195591 206 dbSNP
rs1469020956 209 dbSNP
rs1204768059 215 dbSNP
rs1172663570 220 dbSNP
rs1465059077 222 dbSNP
rs1021094699 225 dbSNP
rs1417029725 228 dbSNP
rs1474198848 229 dbSNP
rs989045182 236 dbSNP
rs1375596673 240 dbSNP
rs866164023 241 dbSNP
rs1472696816 242 dbSNP
rs1057515795 243 dbSNP
rs1159343698 244 dbSNP
rs1286747115 244 dbSNP
rs1456573763 244 dbSNP
rs988314521 246 dbSNP
rs1486942094 248 dbSNP
rs958555541 248 dbSNP
rs763417134 249 dbSNP
rs1199962334 250 dbSNP
rs1342908312 251 dbSNP
rs1262532559 252 dbSNP
rs776085440 252 dbSNP
rs1032593772 253 dbSNP
rs1259151692 253 dbSNP
rs1473269117 254 dbSNP
rs1328744609 262 dbSNP
rs377210137 263 dbSNP
rs1057515794 264 dbSNP
rs1156721549 264 dbSNP
rs1189981954 264 dbSNP
rs1258212041 264 dbSNP
rs1418267399 264 dbSNP
rs1484612128 264 dbSNP
rs866725241 264 dbSNP
rs1315325576 265 dbSNP
rs759675896 265 dbSNP
rs1305340439 266 dbSNP
rs1318900325 266 dbSNP
rs1391139644 266 dbSNP
rs1057515793 267 dbSNP
rs1334683240 272 dbSNP
rs1279966034 274 dbSNP
rs1394979409 279 dbSNP
rs1213177507 280 dbSNP
rs776679275 283 dbSNP
rs1280920430 284 dbSNP
rs1399485509 288 dbSNP
rs1000304188 298 dbSNP
rs771210112 302 dbSNP
rs1252407806 303 dbSNP
rs889461505 306 dbSNP
rs1192600882 307 dbSNP
rs1457504825 308 dbSNP
rs1436007013 311 dbSNP
rs1173748624 312 dbSNP
rs1410681570 315 dbSNP
rs1157415756 318 dbSNP
rs1057515792 323 dbSNP
rs1375979640 329 dbSNP
rs1448063407 332 dbSNP
rs747205131 333 dbSNP
rs1369105862 340 dbSNP
rs1236539578 347 dbSNP
rs1281142881 349 dbSNP
rs1369578157 350 dbSNP
rs774185779 363 dbSNP
rs1202346593 383 dbSNP
rs768520211 390 dbSNP
rs997953410 391 dbSNP
rs1209441793 392 dbSNP
rs748998980 393 dbSNP
rs780042144 394 dbSNP
rs190880115 400 dbSNP
rs767105213 402 dbSNP
rs939849428 406 dbSNP
rs745424083 407 dbSNP
rs888398525 414 dbSNP
rs1338620986 418 dbSNP
rs1443380264 418 dbSNP
rs1361339365 426 dbSNP
rs1212930971 428 dbSNP
rs368897746 435 dbSNP
rs1213372261 442 dbSNP
rs1308038752 447 dbSNP
rs1464672028 447 dbSNP
rs1232400116 448 dbSNP
rs1271050930 453 dbSNP
rs1048298183 456 dbSNP
rs780841342 465 dbSNP
rs1435116198 466 dbSNP
rs1484596716 477 dbSNP
rs1387480715 479 dbSNP
rs1318071173 480 dbSNP
rs1478449429 485 dbSNP
rs1164572428 486 dbSNP
rs186451206 490 dbSNP
rs1415033180 491 dbSNP
rs1324423550 492 dbSNP
rs758956094 495 dbSNP
rs751614652 496 dbSNP
rs1290732250 498 dbSNP
rs1340986607 499 dbSNP
rs1232609525 501 dbSNP
rs1291437220 508 dbSNP
rs751234026 509 dbSNP
rs1228724279 515 dbSNP
rs1283084184 516 dbSNP
rs1314799550 518 dbSNP
rs937892881 523 dbSNP
rs1163023232 524 dbSNP
rs1187840919 526 dbSNP
rs1485095284 526 dbSNP
rs1472136689 527 dbSNP
rs1375223588 533 dbSNP
rs1189314049 534 dbSNP
rs1448893343 535 dbSNP
rs1399187036 538 dbSNP
rs1246458077 540 dbSNP
rs1215835258 541 dbSNP
rs777240291 546 dbSNP
rs1414308026 559 dbSNP
rs1290403199 568 dbSNP
rs926645734 569 dbSNP
rs1448434195 573 dbSNP
rs1278767667 579 dbSNP
rs1370655161 580 dbSNP
rs1225105923 582 dbSNP
rs1286354605 588 dbSNP
rs1346488731 594 dbSNP
rs1208151231 595 dbSNP
rs1486952587 595 dbSNP
rs200411646 595 dbSNP
rs758373736 595 dbSNP
rs1354181012 596 dbSNP
rs1299664981 597 dbSNP
rs758821177 605 dbSNP
rs1232667702 609 dbSNP
rs1363876210 614 dbSNP
rs1179156613 616 dbSNP
rs1294734953 627 dbSNP
rs1434152631 631 dbSNP
rs1171887431 636 dbSNP
rs1377147471 638 dbSNP
rs1442719784 639 dbSNP
rs1327865568 640 dbSNP
rs752947538 641 dbSNP
rs1323321307 642 dbSNP
rs1444170115 644 dbSNP
rs1309487257 647 dbSNP
rs1369825289 649 dbSNP
rs1403898592 656 dbSNP
rs1046355786 662 dbSNP
rs1399291120 663 dbSNP
rs1169741737 664 dbSNP
rs1305004098 665 dbSNP
rs1429642104 670 dbSNP
rs1388452728 671 dbSNP
rs765832342 676 dbSNP
rs949502808 683 dbSNP
rs1195566992 684 dbSNP
rs1200963633 690 dbSNP
rs1478481249 690 dbSNP
rs1454016664 695 dbSNP
rs1191767366 701 dbSNP
rs766432035 702 dbSNP
rs554971161 703 dbSNP
rs181594125 709 dbSNP
rs141763219 710 dbSNP
rs1331815414 711 dbSNP
rs1276471670 712 dbSNP
rs1438267412 716 dbSNP
rs1205840982 718 dbSNP
rs1331166602 721 dbSNP
rs1341349454 722 dbSNP
rs1273141016 723 dbSNP
rs778773488 723 dbSNP
rs1271939839 729 dbSNP
rs1220390643 735 dbSNP
rs1220800418 736 dbSNP
rs1367889183 738 dbSNP
rs1057515791 752 dbSNP
rs1212056662 760 dbSNP
rs1434805107 764 dbSNP
rs1337945342 765 dbSNP
rs1308996192 776 dbSNP
rs958224840 789 dbSNP
rs1429737102 801 dbSNP
rs925410000 811 dbSNP
rs1371216348 812 dbSNP
rs986383215 818 dbSNP
rs1964206 830 dbSNP
rs1416891036 835 dbSNP
rs1459730895 845 dbSNP
rs112880750 849 dbSNP
rs1391054094 850 dbSNP
rs1028005447 852 dbSNP
rs1424761747 859 dbSNP
rs369559004 863 dbSNP
rs1471265901 867 dbSNP
rs761003713 868 dbSNP
rs1253774808 872 dbSNP
rs1334584619 875 dbSNP
rs965146241 881 dbSNP
rs1182621773 908 dbSNP
rs1357344408 910 dbSNP
rs772122128 912 dbSNP
rs1249460673 917 dbSNP
rs1211652883 919 dbSNP
rs1259746958 919 dbSNP
rs762816660 924 dbSNP
rs1312224118 925 dbSNP
rs28721476 929 dbSNP
rs1474086049 933 dbSNP
rs775130666 934 dbSNP
rs1386493009 935 dbSNP
rs766111286 935 dbSNP
rs1217168619 936 dbSNP
rs1419843661 942 dbSNP
rs767782257 942 dbSNP
rs768568672 942 dbSNP
rs1330760662 945 dbSNP
rs1355414200 948 dbSNP
rs1413265587 949 dbSNP
rs2106707 949 dbSNP
rs57103709 950 dbSNP
rs1491485921 951 dbSNP
rs1349196579 952 dbSNP
rs1279473030 953 dbSNP
rs1484663690 954 dbSNP
rs1183324705 955 dbSNP
rs1418356873 955 dbSNP
rs1179213283 956 dbSNP
rs1259954019 956 dbSNP
rs1375309874 957 dbSNP
rs200562804 957 dbSNP
rs769833544 957 dbSNP
rs1057515790 958 dbSNP
rs202065790 958 dbSNP
rs201490079 959 dbSNP
rs200414881 960 dbSNP
rs1305068892 964 dbSNP
rs1449359101 989 dbSNP
rs1358701912 1003 dbSNP
rs1332254647 1004 dbSNP
rs1439931750 1006 dbSNP
rs1015338550 1013 dbSNP
rs1392716606 1020 dbSNP
rs1434456878 1022 dbSNP
rs1402724398 1027 dbSNP
rs1412886464 1032 dbSNP
rs1378759401 1038 dbSNP
rs184686872 1050 dbSNP
rs780151683 1051 dbSNP
rs5979952 1052 dbSNP
rs1447803228 1054 dbSNP
rs1325564441 1057 dbSNP
rs1365566859 1063 dbSNP
rs1472115791 1064 dbSNP
rs1301840539 1065 dbSNP
rs1004486362 1067 dbSNP
rs1409709369 1074 dbSNP
rs1183572173 1080 dbSNP
rs1483524720 1085 dbSNP
rs1236447232 1091 dbSNP
rs1489157548 1093 dbSNP
rs1191299499 1100 dbSNP
rs1428456940 1103 dbSNP
rs1168899000 1116 dbSNP
rs1207410409 1119 dbSNP
rs181174972 1128 dbSNP
rs1466524449 1129 dbSNP
rs1048682861 1136 dbSNP
rs1228195481 1137 dbSNP
rs1327574929 1140 dbSNP
rs1315246354 1148 dbSNP
rs1229449097 1159 dbSNP
rs1002092464 1167 dbSNP
rs905108001 1171 dbSNP
rs1318306468 1178 dbSNP
rs1029257722 1183 dbSNP
rs1301169887 1186 dbSNP
rs1323169969 1187 dbSNP
rs189643332 1187 dbSNP
rs1221588020 1188 dbSNP
rs1057515789 1191 dbSNP
rs1484646906 1203 dbSNP
rs1389693755 1210 dbSNP
rs1192115094 1212 dbSNP
rs1266039499 1219 dbSNP
rs141809461 1229 dbSNP
rs757975308 1235 dbSNP
rs1411820397 1236 dbSNP
rs1455817209 1244 dbSNP
rs1407296109 1271 dbSNP
rs1343267311 1278 dbSNP
rs1165831875 1287 dbSNP
rs1344670547 1288 dbSNP
rs1417991590 1288 dbSNP
rs1166633585 1293 dbSNP
rs1424396652 1303 dbSNP
rs1228520225 1304 dbSNP
rs1299925977 1304 dbSNP
rs1341078023 1304 dbSNP
rs1467195587 1304 dbSNP
rs35590746 1304 dbSNP
rs558114277 1304 dbSNP
rs865815058 1304 dbSNP
rs1350820072 1305 dbSNP
rs1218221758 1306 dbSNP
rs1288715140 1307 dbSNP
rs1246140925 1311 dbSNP
rs1412896794 1314 dbSNP
rs1179628309 1316 dbSNP
rs1450746655 1321 dbSNP
rs1248070933 1327 dbSNP
rs1207769327 1333 dbSNP
rs1210545123 1337 dbSNP
rs879233903 1342 dbSNP
rs184278401 1348 dbSNP
rs1046405564 1349 dbSNP
rs1136276 1352 dbSNP
rs1136277 1353 dbSNP
rs1136278 1358 dbSNP
rs1222681703 1359 dbSNP
rs878988409 1360 dbSNP
rs1321655229 1368 dbSNP
rs1160565652 1375 dbSNP
rs1136280 1385 dbSNP
rs566484686 1386 dbSNP
rs1434040356 1396 dbSNP
rs1301742105 1409 dbSNP
rs774359940 1415 dbSNP
rs1448530587 1421 dbSNP
rs1278564634 1424 dbSNP
rs1366079270 1426 dbSNP
rs1296944414 1427 dbSNP
rs1433242775 1431 dbSNP
rs192328990 1436 dbSNP
rs1058886 1437 dbSNP
rs1058887 1439 dbSNP
rs771455096 1442 dbSNP
rs148298471 1443 dbSNP
rs766836189 1449 dbSNP
rs1444468134 1466 dbSNP
rs1349256395 1468 dbSNP
rs1058888 1473 dbSNP
rs1058889 1477 dbSNP
rs1058890 1481 dbSNP
rs1211293274 1484 dbSNP
rs187740735 1486 dbSNP
rs1456613751 1501 dbSNP
rs1058891 1510 dbSNP
rs1180522351 1510 dbSNP
rs1380984364 1518 dbSNP
rs1058892 1519 dbSNP
rs1431526750 1527 dbSNP
rs1170706475 1533 dbSNP
rs1058893 1539 dbSNP
rs914009383 1540 dbSNP
rs1058894 1550 dbSNP
rs756413153 1551 dbSNP
rs1327967450 1552 dbSNP
rs184839802 1561 dbSNP
rs1064528 1564 dbSNP
rs1058895 1568 dbSNP
rs1448522672 1569 dbSNP
rs1331705207 1580 dbSNP
rs1369575592 1595 dbSNP
rs146362855 1599 dbSNP
rs1058896 1600 dbSNP
rs192015551 1605 dbSNP
rs1058897 1612 dbSNP
rs1192160400 1632 dbSNP
rs187464655 1634 dbSNP
rs1264018147 1635 dbSNP
rs1220110383 1641 dbSNP
rs1257835389 1652 dbSNP
rs1207988293 1655 dbSNP
rs1200752054 1664 dbSNP
rs1343484724 1685 dbSNP
rs1451085061 1690 dbSNP
rs1196871934 1702 dbSNP
rs1478315780 1709 dbSNP
rs1167325309 1723 dbSNP
rs1421208177 1738 dbSNP
rs7716 1739 dbSNP
rs536771371 1758 dbSNP
rs925492194 1770 dbSNP
rs1384527080 1794 dbSNP
rs1333276274 1797 dbSNP
rs776739699 1797 dbSNP
rs1314180265 1798 dbSNP
rs1278191707 1808 dbSNP
rs1316412822 1820 dbSNP
rs1220896370 1822 dbSNP
rs1302193775 1827 dbSNP
rs1386393480 1830 dbSNP
rs770925068 1834 dbSNP
rs1208066491 1835 dbSNP
rs1292102504 1841 dbSNP
rs1301048971 1844 dbSNP
rs200158505 1849 dbSNP
rs1261005107 1869 dbSNP
rs1371013050 1872 dbSNP
rs1167427728 1876 dbSNP
rs1367463505 1928 dbSNP
rs1459979437 1928 dbSNP
rs953639471 1949 dbSNP
rs138407104 1955 dbSNP
rs147081718 1963 dbSNP
rs923496010 1967 dbSNP
rs1432217628 1968 dbSNP
rs1267287113 1976 dbSNP
rs1402190855 1987 dbSNP
rs1279234109 1992 dbSNP
rs1184781879 1994 dbSNP
rs976452261 1997 dbSNP
rs754592922 2002 dbSNP
rs375865683 2013 dbSNP
rs1242881108 2015 dbSNP
rs965064485 2024 dbSNP
rs1357121577 2027 dbSNP
rs1216016499 2034 dbSNP
rs41297317 2035 dbSNP
rs1489233270 2040 dbSNP
rs1216998161 2044 dbSNP
rs1255201162 2045 dbSNP
rs373623026 2048 dbSNP
rs1421905646 2050 dbSNP
rs1251656319 2052 dbSNP
rs878936844 2056 dbSNP
rs1058907 2058 dbSNP
rs1057515788 2060 dbSNP
rs1003985739 2062 dbSNP
rs1203140599 2068 dbSNP
rs1058911 2083 dbSNP
rs1156335012 2088 dbSNP
rs952542582 2092 dbSNP
rs1422071607 2098 dbSNP
rs1299418344 2099 dbSNP
rs199924403 2110 dbSNP
rs1394706755 2112 dbSNP
rs755369088 2113 dbSNP
rs1341331306 2119 dbSNP
rs1239435280 2121 dbSNP
rs1256641671 2122 dbSNP
rs1356019132 2127 dbSNP
rs1240780740 2132 dbSNP
rs1136286 2140 dbSNP
rs1255381652 2150 dbSNP
rs1482139862 2152 dbSNP
rs749591674 2152 dbSNP
rs1256370996 2153 dbSNP
rs1457043332 2153 dbSNP
rs1176167583 2160 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agggcccuUGAG-UA---GUCAGAgg 5'
                  |||| :|   ||| ||  
Target 5' -------cACUCUGUUGCCAGGCUgg 3'
1 - 19
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000453655.2 | 3UTR | CACUCUGUUGCCAGGCUGGAGUGCAGUGGCGCAAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
108 hsa-miR-873-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT081178 MIDN midnolin 2 4
MIRT109809 ZFX zinc finger protein, X-linked 2 4
MIRT242383 TMC5 transmembrane channel like 5 2 4
MIRT444003 METRN meteorin, glial cell differentiation regulator 2 4
MIRT444097 SEPHS1 selenophosphate synthetase 1 2 2
MIRT446158 RPL12 ribosomal protein L12 2 2
MIRT446859 SAMD9L sterile alpha motif domain containing 9 like 2 2
MIRT447275 FZD5 frizzled class receptor 5 2 2
MIRT447391 TMPRSS15 transmembrane protease, serine 15 2 2
MIRT448817 FKBP1A FK506 binding protein 1A 2 4
MIRT450582 HIST1H2BG histone cluster 1 H2B family member g 2 2
MIRT451776 USP36 ubiquitin specific peptidase 36 2 2
MIRT457961 ABCC5 ATP binding cassette subfamily C member 5 2 4
MIRT458424 KLHL38 kelch like family member 38 2 4
MIRT461383 SLFN12L schlafen family member 12 like 2 2
MIRT467793 SLC2A14 solute carrier family 2 member 14 2 2
MIRT476517 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT480290 C7orf73 short transmembrane mitochondrial protein 1 2 4
MIRT482745 HES7 hes family bHLH transcription factor 7 2 10
MIRT483189 HIST1H2AH histone cluster 1 H2A family member h 2 6
MIRT486545 DCTN4 dynactin subunit 4 2 2
MIRT486581 ZNF619 zinc finger protein 619 2 2
MIRT492604 POLR3E RNA polymerase III subunit E 2 2
MIRT494130 DCAF7 DDB1 and CUL4 associated factor 7 2 6
MIRT496023 ZBED3 zinc finger BED-type containing 3 2 2
MIRT497121 NBEAL1 neurobeachin like 1 2 2
MIRT497400 TMEM245 transmembrane protein 245 2 2
MIRT501410 RANBP10 RAN binding protein 10 2 2
MIRT510947 PPTC7 PTC7 protein phosphatase homolog 2 6
MIRT512494 ARID2 AT-rich interaction domain 2 2 2
MIRT512595 ZNF783 zinc finger family member 783 2 2
MIRT512612 CNTN4 contactin 4 2 2
MIRT517808 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT520686 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT526179 HEPH hephaestin 2 2
MIRT532568 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT533979 TADA2A transcriptional adaptor 2A 2 2
MIRT538622 CCSER2 coiled-coil serine rich protein 2 2 4
MIRT539703 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539806 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT540422 FAM83F family with sequence similarity 83 member F 2 2
MIRT540506 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540619 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT542423 ZNF331 zinc finger protein 331 2 2
MIRT542454 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT543383 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT544777 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT544923 ERCC4 ERCC excision repair 4, endonuclease catalytic subunit 2 2
MIRT549768 ZNF611 zinc finger protein 611 2 4
MIRT551242 COLEC10 collectin subfamily member 10 2 2
MIRT560474 ENSA endosulfine alpha 2 2
MIRT569738 GPR173 G protein-coupled receptor 173 2 2
MIRT571297 CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 2 2
MIRT572345 CKAP2L cytoskeleton associated protein 2 like 2 2
MIRT573112 ERBB2IP erbb2 interacting protein 2 2
MIRT607744 ANGPT4 angiopoietin 4 2 2
MIRT607903 SPRYD4 SPRY domain containing 4 2 2
MIRT611744 SERPING1 serpin family G member 1 2 4
MIRT615101 BNC2 basonuclin 2 2 2
MIRT619124 CD40LG CD40 ligand 2 2
MIRT625572 ANKRD42 ankyrin repeat domain 42 2 2
MIRT629038 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633986 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635675 COX18 COX18, cytochrome c oxidase assembly factor 2 4
MIRT637471 DEFB105B defensin beta 105B 2 4
MIRT637503 DEFB105A defensin beta 105A 2 4
MIRT639735 MAP2K2 mitogen-activated protein kinase kinase 2 2 2
MIRT640730 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT645364 C9orf47 chromosome 9 open reading frame 47 2 2
MIRT647938 RNF152 ring finger protein 152 2 2
MIRT649400 SH2D4A SH2 domain containing 4A 2 2
MIRT656860 KIN Kin17 DNA and RNA binding protein 2 2
MIRT663470 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT663507 NKAPL NFKB activating protein like 2 4
MIRT667690 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT677403 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT678682 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT678789 NUPL2 nucleoporin like 2 2 2
MIRT680649 KIAA1456 KIAA1456 2 2
MIRT682450 MTX3 metaxin 3 2 2
MIRT682740 CA6 carbonic anhydrase 6 2 2
MIRT684421 TUFT1 tuftelin 1 2 2
MIRT690535 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT690595 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690771 PLA2G2C phospholipase A2 group IIC 2 2
MIRT692233 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693667 MXRA7 matrix remodeling associated 7 2 2
MIRT695551 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695870 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT696214 LYZ lysozyme 2 2
MIRT698368 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT700795 PHTF2 putative homeodomain transcription factor 2 2 2
MIRT701640 MYLK3 myosin light chain kinase 3 2 2
MIRT702989 HERPUD2 HERPUD family member 2 2 2
MIRT703627 FBXL3 F-box and leucine rich repeat protein 3 2 2
MIRT703783 FAM102B family with sequence similarity 102 member B 2 2
MIRT704293 DDX19B DEAD-box helicase 19B 2 2
MIRT704828 CDC73 cell division cycle 73 2 2
MIRT705014 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT708480 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT710770 PHF7 PHD finger protein 7 2 2
MIRT718918 TRIM66 tripartite motif containing 66 2 2
MIRT720390 ZNF549 zinc finger protein 549 2 2
MIRT720593 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT723515 SIGLEC8 sialic acid binding Ig like lectin 8 2 2
MIRT724458 PRKX protein kinase, X-linked 2 2
MIRT737267 UMAD1 UBAP1-MVB12-associated (UMA) domain containing 1 3 0
MIRT737356 ZIC2 Zic family member 2 4 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-873 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-873 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-873 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-873 Cisplatin 5460033 NSC119875 approved resistant cell line (OE19)
hsa-mir-873 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-873 Decitabine 451668 approved sensitive tissue (esopheageal cancer)
hsa-miR-873-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-873-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-873-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-873-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-873-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-873-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-873-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-873-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-873-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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