pre-miRNA Information
pre-miRNA hsa-mir-873   
Genomic Coordinates chr9: 28888879 - 28888955
Synonyms MIRN873, hsa-mir-873, MIR873
Description Homo sapiens miR-873 stem-loop
Comment This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-873-3p
Sequence 46| GGAGACUGAUGAGUUCCCGGGA |67
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs760528397 3 dbSNP
rs773403294 9 dbSNP
rs1273846238 13 dbSNP
rs1339396073 15 dbSNP
rs1247999695 18 dbSNP
rs377380148 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol C17orf105   
Synonyms -
Description chromosome 17 open reading frame 105
Transcript NM_001136483   
Expression
Putative miRNA Targets on C17orf105
3'UTR of C17orf105
(miRNA target sites are highlighted)
>C17orf105|NM_001136483|3'UTR
   1 GTTACTCACCATGGAAAAGATACAAGAGAAGGCCCTAGGATTTCTTGGCTGCTCAGGATCTCAAGACACTCCCGACTGGC
  81 TGAATGCTCCATCTTCAGATGCTTCAATAAAGCTTGGAACATAAAATGCGTAAGTTACATTTAGGGGACCCAAAGGCTTT
 161 ATGTTCTCATTCCAAAATGGGGCAGGCAGAAGGAAAGATGCAATGAGCATTTTTATTTGGGGCTATGAAAAGAAGTTTTA
 241 ACGAGAGAGAGAGAGAGAAATCTGAGAGAACTCTTTAAAACATACACCATCATCACCATCCCGTGGAAGAAGAAAAGCTG
 321 GGGTGAGATCATCCAGCCACAAGTACAGCACTGTCAAAATGGAAAACGAAATCACATGACAACATCAAGGTTCAGAAAAC
 401 ACAAGGAACAAATGCCATTAGTTCCTCTGTGAATACACACGATCG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGGCCCUUGAGUAGUC--AGAGg 5'
            |: ||  ||  ||||  |||| 
Target 5' ttCTTGG--CTGCTCAGGATCTCa 3'
42 - 63 112.00 -16.10
2
miRNA  3' agggcCCUUG---A--GUAGUCA--GAGg 5'
               |||||   |  |||:|||  ||| 
Target 5' cacaaGGAACAAATGCCATTAGTTCCTCt 3'
400 - 428 107.00 -13.40
3
miRNA  3' agGGCC---CUUGAGUA-GUCAGAGg 5'
            |:||   ||: |||| ||| | | 
Target 5' agCTGGGGTGAGATCATCCAGCCACa 3'
316 - 341 100.00 -16.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN15667632 71 COSMIC
COSN15359197 221 COSMIC
COSN7435764 462 COSMIC
COSN23124500 747 COSMIC
COSN16845448 1026 COSMIC
COSN29810163 1132 COSMIC
COSN24518373 1147 COSMIC
COSN16783710 1169 COSMIC
COSN32012180 1370 COSMIC
COSN29742848 1409 COSMIC
COSN24869109 1463 COSMIC
COSN18759845 1549 COSMIC
COSN23672159 1594 COSMIC
COSN14858321 1786 COSMIC
COSN26330010 2187 COSMIC
COSN8836968 2199 COSMIC
COSN23742454 2383 COSMIC
COSN15017687 2581 COSMIC
COSN17764408 2937 COSMIC
COSN27250519 3090 COSMIC
COSN27297372 3090 COSMIC
COSN27582663 3090 COSMIC
COSN21556042 3108 COSMIC
COSN23027255 3235 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1052935707 1 dbSNP
rs1263133286 4 dbSNP
rs148379784 5 dbSNP
rs998098025 6 dbSNP
rs567974747 10 dbSNP
rs754999825 14 dbSNP
rs756060150 18 dbSNP
rs1437600615 21 dbSNP
rs766347147 27 dbSNP
rs1164192424 28 dbSNP
rs753808914 30 dbSNP
rs1425508553 33 dbSNP
rs1164218249 35 dbSNP
rs1005180822 50 dbSNP
rs1468810460 52 dbSNP
rs1047620613 58 dbSNP
rs1483399507 71 dbSNP
rs1016617831 72 dbSNP
rs1219572950 78 dbSNP
rs571483985 79 dbSNP
rs1453539690 84 dbSNP
rs961124910 97 dbSNP
rs55705160 98 dbSNP
rs1328248998 100 dbSNP
rs1286342907 102 dbSNP
rs1244535005 107 dbSNP
rs1024947622 113 dbSNP
rs1273722221 114 dbSNP
rs1433758253 118 dbSNP
rs919421470 119 dbSNP
rs960520256 120 dbSNP
rs1413684770 129 dbSNP
rs1471832104 131 dbSNP
rs905195867 138 dbSNP
rs753173018 139 dbSNP
rs556906600 145 dbSNP
rs1161918007 146 dbSNP
rs1419225573 150 dbSNP
rs1473211874 151 dbSNP
rs758357257 160 dbSNP
rs758812039 161 dbSNP
rs1479077026 163 dbSNP
rs1349408241 173 dbSNP
rs1247461429 175 dbSNP
rs781246684 177 dbSNP
rs1464221908 180 dbSNP
rs1310109800 185 dbSNP
rs115014002 187 dbSNP
rs1317444446 195 dbSNP
rs538394349 205 dbSNP
rs1277876761 213 dbSNP
rs1021096280 221 dbSNP
rs934745737 221 dbSNP
rs865932023 229 dbSNP
rs1356776191 235 dbSNP
rs1363396273 244 dbSNP
rs778100538 250 dbSNP
rs1458134426 258 dbSNP
rs987188987 262 dbSNP
rs553810813 264 dbSNP
rs571979293 268 dbSNP
rs1174601680 275 dbSNP
rs1416205717 276 dbSNP
rs1314332114 277 dbSNP
rs1425969575 291 dbSNP
rs1287605583 297 dbSNP
rs943044226 301 dbSNP
rs536259146 312 dbSNP
rs973510891 313 dbSNP
rs1250211132 316 dbSNP
rs1320645223 321 dbSNP
rs998463656 326 dbSNP
rs920508761 336 dbSNP
rs1049588677 360 dbSNP
rs554238948 370 dbSNP
rs929234257 372 dbSNP
rs889673209 374 dbSNP
rs1313372409 377 dbSNP
rs1047568884 380 dbSNP
rs1227105317 382 dbSNP
rs1280436561 382 dbSNP
rs576288109 386 dbSNP
rs1299429215 388 dbSNP
rs115872287 390 dbSNP
rs1180989384 394 dbSNP
rs1301535842 421 dbSNP
rs7215012 424 dbSNP
rs993925881 428 dbSNP
rs905311119 429 dbSNP
rs1427954410 434 dbSNP
rs769464839 440 dbSNP
rs755663729 443 dbSNP
rs1456662991 445 dbSNP
rs1169487382 452 dbSNP
rs1428848728 453 dbSNP
rs1032780509 456 dbSNP
rs960490733 457 dbSNP
rs992923191 459 dbSNP
rs916095695 460 dbSNP
rs577107912 465 dbSNP
rs1258218303 472 dbSNP
rs1203785454 475 dbSNP
rs1481800702 476 dbSNP
rs970262624 481 dbSNP
rs979008640 484 dbSNP
rs925965647 494 dbSNP
rs1321441418 499 dbSNP
rs1429420146 501 dbSNP
rs934690899 507 dbSNP
rs779636779 508 dbSNP
rs545544191 511 dbSNP
rs922636267 520 dbSNP
rs1408020464 521 dbSNP
rs894032831 522 dbSNP
rs560653340 526 dbSNP
rs1282379497 530 dbSNP
rs1049561151 539 dbSNP
rs748898610 541 dbSNP
rs555081425 543 dbSNP
rs1425375094 556 dbSNP
rs527758132 564 dbSNP
rs754478913 569 dbSNP
rs1021044094 581 dbSNP
rs1228513587 596 dbSNP
rs1471286151 597 dbSNP
rs1038330709 604 dbSNP
rs896817416 614 dbSNP
rs779284614 619 dbSNP
rs543014121 620 dbSNP
rs73985105 629 dbSNP
rs1017298833 630 dbSNP
rs1278860528 636 dbSNP
rs964844565 640 dbSNP
rs1227093438 646 dbSNP
rs1352348398 653 dbSNP
rs1307779827 657 dbSNP
rs973071488 664 dbSNP
rs1388806901 681 dbSNP
rs74371596 686 dbSNP
rs929207342 694 dbSNP
rs1237417545 707 dbSNP
rs1023072632 710 dbSNP
rs1475996032 712 dbSNP
rs1414185202 715 dbSNP
rs983372590 716 dbSNP
rs746273719 719 dbSNP
rs1033717046 732 dbSNP
rs1264762130 732 dbSNP
rs1267903250 732 dbSNP
rs137968559 732 dbSNP
rs762446575 732 dbSNP
rs978974193 732 dbSNP
rs1388476340 733 dbSNP
rs1331834344 735 dbSNP
rs1261864808 744 dbSNP
rs550059798 747 dbSNP
rs949856479 749 dbSNP
rs574959045 750 dbSNP
rs1044281042 752 dbSNP
rs748081458 766 dbSNP
rs1404558521 772 dbSNP
rs905258351 782 dbSNP
rs1319642821 792 dbSNP
rs141559382 793 dbSNP
rs1387022389 798 dbSNP
rs1001251253 799 dbSNP
rs1465071872 805 dbSNP
rs1375431177 807 dbSNP
rs75436311 813 dbSNP
rs117962974 815 dbSNP
rs1247100576 827 dbSNP
rs1187032435 834 dbSNP
rs565790204 853 dbSNP
rs1262997407 857 dbSNP
rs535919927 858 dbSNP
rs1299693429 866 dbSNP
rs911044918 870 dbSNP
rs941214873 897 dbSNP
rs1009735554 900 dbSNP
rs1038209776 907 dbSNP
rs1328009028 915 dbSNP
rs897029937 916 dbSNP
rs1395394664 917 dbSNP
rs1042614993 918 dbSNP
rs890739808 928 dbSNP
rs1314171364 930 dbSNP
rs1434840943 931 dbSNP
rs572829844 934 dbSNP
rs1009006134 935 dbSNP
rs1476556522 940 dbSNP
rs1374007312 945 dbSNP
rs1187356689 947 dbSNP
rs771014191 955 dbSNP
rs1441190101 962 dbSNP
rs964465938 963 dbSNP
rs554556537 970 dbSNP
rs1346606134 975 dbSNP
rs929923925 977 dbSNP
rs1272709691 987 dbSNP
rs569656302 992 dbSNP
rs187741616 1013 dbSNP
rs368384439 1016 dbSNP
rs34814687 1017 dbSNP
rs1338593580 1021 dbSNP
rs116541278 1024 dbSNP
rs78364015 1026 dbSNP
rs41455049 1031 dbSNP
rs572514175 1041 dbSNP
rs1163010218 1042 dbSNP
rs927131353 1043 dbSNP
rs1379598778 1050 dbSNP
rs372615811 1052 dbSNP
rs938075389 1058 dbSNP
rs1189313978 1067 dbSNP
rs989095229 1072 dbSNP
rs542746731 1073 dbSNP
rs1207451449 1075 dbSNP
rs915365151 1076 dbSNP
rs1289480573 1084 dbSNP
rs1424247026 1085 dbSNP
rs1457553169 1102 dbSNP
rs538816177 1108 dbSNP
rs112634663 1110 dbSNP
rs1166207561 1110 dbSNP
rs1354020984 1110 dbSNP
rs1397153162 1110 dbSNP
rs1403918248 1110 dbSNP
rs144276030 1110 dbSNP
rs545561689 1110 dbSNP
rs985534051 1110 dbSNP
rs1322493080 1111 dbSNP
rs1386311842 1113 dbSNP
rs1457161155 1114 dbSNP
rs1433716387 1120 dbSNP
rs1323581159 1122 dbSNP
rs1332307615 1124 dbSNP
rs1042397812 1125 dbSNP
rs1230693105 1127 dbSNP
rs1178990198 1128 dbSNP
rs1470581102 1129 dbSNP
rs1197063678 1132 dbSNP
rs1246292914 1132 dbSNP
rs1274798611 1134 dbSNP
rs62078651 1134 dbSNP
rs769030844 1139 dbSNP
rs1328351997 1142 dbSNP
rs546067510 1143 dbSNP
rs1224921480 1145 dbSNP
rs1273815182 1147 dbSNP
rs890687630 1147 dbSNP
rs974284796 1150 dbSNP
rs1372792019 1152 dbSNP
rs1161939806 1154 dbSNP
rs1466871788 1154 dbSNP
rs57998013 1154 dbSNP
rs762276596 1154 dbSNP
rs771354077 1154 dbSNP
rs531577812 1159 dbSNP
rs929866622 1162 dbSNP
rs1039170553 1164 dbSNP
rs397944365 1167 dbSNP
rs1056414467 1169 dbSNP
rs1194008940 1169 dbSNP
rs1253912957 1169 dbSNP
rs1455743289 1169 dbSNP
rs1240246150 1171 dbSNP
rs75723816 1173 dbSNP
rs1464790768 1177 dbSNP
rs1316931679 1210 dbSNP
rs995058410 1214 dbSNP
rs1027809683 1216 dbSNP
rs1210942074 1219 dbSNP
rs950476467 1232 dbSNP
rs1004534527 1236 dbSNP
rs1023996943 1251 dbSNP
rs1231522964 1252 dbSNP
rs1449903653 1258 dbSNP
rs1349558534 1263 dbSNP
rs971273658 1275 dbSNP
rs763448139 1276 dbSNP
rs867028132 1285 dbSNP
rs1363502711 1291 dbSNP
rs980433889 1311 dbSNP
rs565251871 1312 dbSNP
rs1359164041 1329 dbSNP
rs547950858 1342 dbSNP
rs1436717467 1348 dbSNP
rs1395870617 1353 dbSNP
rs1168235089 1356 dbSNP
rs990030484 1362 dbSNP
rs1472813488 1363 dbSNP
rs903576639 1365 dbSNP
rs1409679568 1367 dbSNP
rs760102260 1371 dbSNP
rs1163768154 1373 dbSNP
rs915296603 1374 dbSNP
rs1392308487 1383 dbSNP
rs945485677 1395 dbSNP
rs547972450 1397 dbSNP
rs911902272 1399 dbSNP
rs944922402 1402 dbSNP
rs12601060 1403 dbSNP
rs1486378797 1408 dbSNP
rs900787755 1408 dbSNP
rs891986709 1409 dbSNP
rs1204006109 1410 dbSNP
rs930794141 1415 dbSNP
rs139270720 1418 dbSNP
rs1215565776 1423 dbSNP
rs886167881 1424 dbSNP
rs192735557 1441 dbSNP
rs1416659041 1442 dbSNP
rs1023942870 1459 dbSNP
rs962764427 1462 dbSNP
rs1428055379 1468 dbSNP
rs1356559804 1470 dbSNP
rs1172223362 1475 dbSNP
rs1428947405 1481 dbSNP
rs1412914802 1483 dbSNP
rs12601085 1498 dbSNP
rs537026677 1499 dbSNP
rs1475862986 1502 dbSNP
rs558561733 1507 dbSNP
rs1257616145 1519 dbSNP
rs1203889120 1530 dbSNP
rs1479436264 1531 dbSNP
rs1235696541 1532 dbSNP
rs1252754058 1532 dbSNP
rs1271751552 1532 dbSNP
rs35586550 1532 dbSNP
rs35787597 1532 dbSNP
rs397858023 1532 dbSNP
rs1354358969 1533 dbSNP
rs918405436 1535 dbSNP
rs570765292 1536 dbSNP
rs1389782443 1549 dbSNP
rs1252817614 1550 dbSNP
rs1484124946 1551 dbSNP
rs1180273053 1558 dbSNP
rs1034670231 1570 dbSNP
rs534575910 1571 dbSNP
rs1162632103 1579 dbSNP
rs868491680 1586 dbSNP
rs1180798581 1587 dbSNP
rs1020092147 1593 dbSNP
rs966732597 1594 dbSNP
rs755088003 1595 dbSNP
rs1488328594 1596 dbSNP
rs1251512371 1597 dbSNP
rs1455964382 1601 dbSNP
rs553175903 1613 dbSNP
rs912018569 1618 dbSNP
rs944699523 1619 dbSNP
rs974800258 1620 dbSNP
rs922159423 1623 dbSNP
rs376659418 1635 dbSNP
rs1162307148 1636 dbSNP
rs574543395 1638 dbSNP
rs1049667780 1640 dbSNP
rs886613222 1659 dbSNP
rs1307889892 1666 dbSNP
rs1431319380 1667 dbSNP
rs940381882 1669 dbSNP
rs536781586 1675 dbSNP
rs906985034 1677 dbSNP
rs554629611 1681 dbSNP
rs753503616 1682 dbSNP
rs1442895327 1689 dbSNP
rs1339155071 1690 dbSNP
rs754588326 1699 dbSNP
rs893017687 1716 dbSNP
rs1450917272 1717 dbSNP
rs1344406034 1721 dbSNP
rs1203331081 1730 dbSNP
rs947979434 1734 dbSNP
rs1432234876 1735 dbSNP
rs1274163314 1740 dbSNP
rs1480202287 1755 dbSNP
rs576092366 1757 dbSNP
rs986753916 1762 dbSNP
rs1195865341 1767 dbSNP
rs1044680182 1770 dbSNP
rs912526928 1771 dbSNP
rs1020038124 1773 dbSNP
rs543432299 1774 dbSNP
rs1421929083 1777 dbSNP
rs564888566 1778 dbSNP
rs1390291888 1782 dbSNP
rs781251408 1783 dbSNP
rs577474618 1789 dbSNP
rs1236173971 1790 dbSNP
rs986632722 1809 dbSNP
rs1317484734 1810 dbSNP
rs541348894 1811 dbSNP
rs1387138264 1817 dbSNP
rs1288915911 1819 dbSNP
rs1018975072 1822 dbSNP
rs1392821142 1823 dbSNP
rs778560011 1826 dbSNP
rs559940982 1827 dbSNP
rs748098394 1828 dbSNP
rs758357029 1831 dbSNP
rs530208186 1832 dbSNP
rs1304897641 1837 dbSNP
rs548298388 1840 dbSNP
rs1263095985 1843 dbSNP
rs891355058 1851 dbSNP
rs921970560 1854 dbSNP
rs777735459 1867 dbSNP
rs1396032025 1886 dbSNP
rs1484749351 1890 dbSNP
rs1282655175 1895 dbSNP
rs985042707 1897 dbSNP
rs1007167195 1903 dbSNP
rs147284628 1905 dbSNP
rs1225014377 1906 dbSNP
rs748031944 1906 dbSNP
rs1296238849 1907 dbSNP
rs1413591866 1910 dbSNP
rs1373102541 1912 dbSNP
rs940831960 1922 dbSNP
rs1226212288 1924 dbSNP
rs1045958215 1927 dbSNP
rs928353518 1928 dbSNP
rs1297189048 1939 dbSNP
rs1314271945 1941 dbSNP
rs995990038 1942 dbSNP
rs1395411126 1944 dbSNP
rs547078189 1958 dbSNP
rs1210577358 1968 dbSNP
rs1055838114 1983 dbSNP
rs570426333 1992 dbSNP
rs991970213 1993 dbSNP
rs1024774466 2012 dbSNP
rs969252132 2014 dbSNP
rs1188827380 2015 dbSNP
rs1482831936 2023 dbSNP
rs892807380 2025 dbSNP
rs539006257 2026 dbSNP
rs552213763 2038 dbSNP
rs1341251961 2042 dbSNP
rs1251752661 2047 dbSNP
rs1041610629 2051 dbSNP
rs1353552178 2064 dbSNP
rs1294591599 2067 dbSNP
rs1414912462 2079 dbSNP
rs1418366242 2080 dbSNP
rs570456620 2081 dbSNP
rs936383076 2095 dbSNP
rs1326480205 2110 dbSNP
rs1433467672 2116 dbSNP
rs988292248 2123 dbSNP
rs1164726955 2127 dbSNP
rs1007997077 2128 dbSNP
rs913617778 2134 dbSNP
rs933079570 2141 dbSNP
rs1051242396 2147 dbSNP
rs559190861 2150 dbSNP
rs1439282989 2153 dbSNP
rs1212909800 2154 dbSNP
rs942919375 2154 dbSNP
rs140766602 2156 dbSNP
rs996284120 2160 dbSNP
rs1275027335 2182 dbSNP
rs1029369024 2183 dbSNP
rs546556964 2192 dbSNP
rs898489819 2198 dbSNP
rs984823668 2205 dbSNP
rs1336048277 2213 dbSNP
rs1325608217 2215 dbSNP
rs908111388 2219 dbSNP
rs1299436129 2232 dbSNP
rs1026071159 2233 dbSNP
rs962309671 2243 dbSNP
rs981582334 2267 dbSNP
rs564134222 2272 dbSNP
rs569503695 2272 dbSNP
rs1310236830 2280 dbSNP
rs1160431131 2296 dbSNP
rs1470633785 2303 dbSNP
rs1394750524 2312 dbSNP
rs568281062 2330 dbSNP
rs969221847 2333 dbSNP
rs1254740748 2339 dbSNP
rs1268695750 2340 dbSNP
rs535307605 2348 dbSNP
rs1206726144 2356 dbSNP
rs1281517882 2362 dbSNP
rs1032258828 2364 dbSNP
rs1350912117 2367 dbSNP
rs1055547789 2371 dbSNP
rs958196814 2399 dbSNP
rs1192620142 2406 dbSNP
rs769930241 2412 dbSNP
rs1373656688 2413 dbSNP
rs556708786 2414 dbSNP
rs947043240 2429 dbSNP
rs1344018004 2440 dbSNP
rs570834167 2441 dbSNP
rs1401409746 2443 dbSNP
rs1375022444 2447 dbSNP
rs749043064 2449 dbSNP
rs775483831 2450 dbSNP
rs913578101 2458 dbSNP
rs1456171296 2461 dbSNP
rs1191624041 2462 dbSNP
rs942787767 2464 dbSNP
rs1475023880 2470 dbSNP
rs1240331904 2484 dbSNP
rs1217244386 2491 dbSNP
rs1488347196 2506 dbSNP
rs933066818 2509 dbSNP
rs987250604 2525 dbSNP
rs1159015646 2530 dbSNP
rs1349677250 2534 dbSNP
rs903084852 2536 dbSNP
rs1008112958 2542 dbSNP
rs942886643 2544 dbSNP
rs114803856 2552 dbSNP
rs1438639528 2556 dbSNP
rs1292030458 2561 dbSNP
rs931568046 2566 dbSNP
rs1345042495 2567 dbSNP
rs899666610 2574 dbSNP
rs997121767 2576 dbSNP
rs7213802 2580 dbSNP
rs1176489493 2581 dbSNP
rs1409175521 2592 dbSNP
rs1330941663 2599 dbSNP
rs952256121 2620 dbSNP
rs1188213613 2622 dbSNP
rs764543872 2630 dbSNP
rs1006204786 2633 dbSNP
rs1256181842 2645 dbSNP
rs1185251805 2659 dbSNP
rs1321818102 2661 dbSNP
rs1486431896 2664 dbSNP
rs1223076897 2666 dbSNP
rs144419704 2675 dbSNP
rs1306158463 2681 dbSNP
rs1275651339 2684 dbSNP
rs1490069101 2684 dbSNP
rs1355456353 2685 dbSNP
rs905032606 2690 dbSNP
rs962258830 2691 dbSNP
rs981697037 2698 dbSNP
rs928922292 2699 dbSNP
rs1177156623 2705 dbSNP
rs1415103743 2710 dbSNP
rs957957747 2712 dbSNP
rs1168159478 2719 dbSNP
rs138113656 2726 dbSNP
rs1009922541 2733 dbSNP
rs142639187 2733 dbSNP
rs958895203 2736 dbSNP
rs954396617 2737 dbSNP
rs1365022644 2755 dbSNP
rs1256374403 2758 dbSNP
rs9899746 2759 dbSNP
rs910266119 2761 dbSNP
rs1234956875 2769 dbSNP
rs964466766 2784 dbSNP
rs1199704106 2794 dbSNP
rs574997400 2799 dbSNP
rs1334739960 2806 dbSNP
rs947159372 2810 dbSNP
rs559778054 2823 dbSNP
rs575041419 2825 dbSNP
rs542446512 2828 dbSNP
rs1322406734 2831 dbSNP
rs977030176 2833 dbSNP
rs1352155779 2834 dbSNP
rs1222272944 2836 dbSNP
rs879003127 2836 dbSNP
rs148487685 2847 dbSNP
rs530666345 2853 dbSNP
rs924290407 2854 dbSNP
rs1333085879 2856 dbSNP
rs552301061 2870 dbSNP
rs568195315 2871 dbSNP
rs540676848 2879 dbSNP
rs553917395 2880 dbSNP
rs1229555187 2883 dbSNP
rs1368525906 2884 dbSNP
rs376668144 2887 dbSNP
rs1416904081 2889 dbSNP
rs932486777 2890 dbSNP
rs1179594820 2894 dbSNP
rs949425295 2902 dbSNP
rs546542945 2910 dbSNP
rs1251601863 2914 dbSNP
rs905252002 2925 dbSNP
rs1489128943 2930 dbSNP
rs1260219918 2937 dbSNP
rs76458117 2938 dbSNP
rs1482295190 2940 dbSNP
rs767906674 2941 dbSNP
rs142720395 2956 dbSNP
rs753497114 2958 dbSNP
rs897831004 2960 dbSNP
rs1002910075 2965 dbSNP
rs1474092077 2967 dbSNP
rs893660481 2969 dbSNP
rs1301088167 2973 dbSNP
rs1388441941 2976 dbSNP
rs12602800 2977 dbSNP
rs73985106 2978 dbSNP
rs1451020667 2981 dbSNP
rs991648407 2983 dbSNP
rs1158876220 2990 dbSNP
rs1454060454 2991 dbSNP
rs568702441 2992 dbSNP
rs1008536034 2993 dbSNP
rs1408005589 2997 dbSNP
rs1327875245 3016 dbSNP
rs1434230493 3017 dbSNP
rs1359516310 3020 dbSNP
rs1450210047 3022 dbSNP
rs1203416305 3027 dbSNP
rs1312796665 3029 dbSNP
rs1017291982 3033 dbSNP
rs1286927221 3034 dbSNP
rs1210456445 3043 dbSNP
rs1346071295 3048 dbSNP
rs1381431299 3057 dbSNP
rs112085164 3063 dbSNP
rs1191670457 3063 dbSNP
rs144506245 3063 dbSNP
rs540398855 3063 dbSNP
rs1263984033 3069 dbSNP
rs1430324189 3069 dbSNP
rs964431177 3071 dbSNP
rs1228437716 3076 dbSNP
rs973582851 3076 dbSNP
rs1022226685 3078 dbSNP
rs1201923196 3079 dbSNP
rs968407341 3079 dbSNP
rs977144884 3086 dbSNP
rs548081491 3099 dbSNP
rs764850865 3102 dbSNP
rs943697832 3103 dbSNP
rs1279863273 3105 dbSNP
rs953025756 3109 dbSNP
rs1225132707 3114 dbSNP
rs1319998583 3120 dbSNP
rs1278246979 3127 dbSNP
rs796609922 3134 dbSNP
rs976851393 3137 dbSNP
rs558602249 3138 dbSNP
rs932579044 3148 dbSNP
rs908748831 3150 dbSNP
rs1396246905 3151 dbSNP
rs1166579381 3155 dbSNP
rs1467615073 3161 dbSNP
rs949645305 3164 dbSNP
rs1048196867 3165 dbSNP
rs752208702 3168 dbSNP
rs570856564 3173 dbSNP
rs1036441965 3175 dbSNP
rs1188518878 3176 dbSNP
rs534722202 3178 dbSNP
rs1002858277 3179 dbSNP
rs545806675 3180 dbSNP
rs1388565690 3196 dbSNP
rs1459018886 3201 dbSNP
rs1475244084 3201 dbSNP
rs1036119344 3209 dbSNP
rs1232112230 3215 dbSNP
rs1332040766 3220 dbSNP
rs1285531819 3221 dbSNP
rs1054315138 3232 dbSNP
rs893639721 3235 dbSNP
rs553286459 3236 dbSNP
rs1449491063 3237 dbSNP
rs1401609504 3242 dbSNP
rs758443769 3249 dbSNP
rs1415942821 3254 dbSNP
rs1009777203 3257 dbSNP
rs189905187 3258 dbSNP
rs1163974789 3261 dbSNP
rs1469787306 3267 dbSNP
rs1334644099 3273 dbSNP
rs542534169 3275 dbSNP
rs1362331200 3276 dbSNP
rs777615917 3278 dbSNP
rs1042233607 3282 dbSNP
rs1213006138 3283 dbSNP
rs1013596065 3284 dbSNP
rs1021710822 3285 dbSNP
rs557638181 3292 dbSNP
rs1325027593 3303 dbSNP
rs977591509 3306 dbSNP
rs1031367706 3312 dbSNP
rs1209964111 3315 dbSNP
rs1324168024 3322 dbSNP
rs1429639842 3326 dbSNP
rs151006328 3327 dbSNP
rs1378123610 3328 dbSNP
rs976418928 3329 dbSNP
rs1017260579 3334 dbSNP
rs191720482 3335 dbSNP
rs1222024643 3341 dbSNP
rs953952927 3344 dbSNP
rs1324260923 3366 dbSNP
rs900196688 3370 dbSNP
rs564042413 3374 dbSNP
rs909839343 3376 dbSNP
rs1211113049 3394 dbSNP
rs1380669272 3403 dbSNP
rs1406109368 3411 dbSNP
rs994585980 3419 dbSNP
rs939824234 3436 dbSNP
rs1036890432 3440 dbSNP
rs1198902269 3442 dbSNP
rs562464291 3443 dbSNP
rs938778520 3444 dbSNP
rs1057101292 3449 dbSNP
rs1354051156 3451 dbSNP
rs1280019719 3453 dbSNP
rs1232617333 3459 dbSNP
rs894471658 3462 dbSNP
rs1275996845 3470 dbSNP
rs1338945936 3473 dbSNP
rs1173912478 3482 dbSNP
rs1428317625 3485 dbSNP
rs1300178945 3488 dbSNP
rs1420535928 3491 dbSNP
rs1375113557 3494 dbSNP
rs1457766867 3496 dbSNP
rs1412574213 3498 dbSNP
rs1161243091 3519 dbSNP
rs757058517 3522 dbSNP
rs982358396 3523 dbSNP
rs926619333 3529 dbSNP
rs184638018 3533 dbSNP
rs1260395737 3535 dbSNP
rs1195259461 3536 dbSNP
rs531465029 3544 dbSNP
rs989500679 3553 dbSNP
rs140843886 3555 dbSNP
rs189051336 3564 dbSNP
rs915280320 3569 dbSNP
rs746084193 3570 dbSNP
rs1214483293 3576 dbSNP
rs1338091570 3588 dbSNP
rs769952552 3601 dbSNP
rs998958152 3602 dbSNP
rs1230817675 3627 dbSNP
rs1280140046 3629 dbSNP
rs1259469481 3633 dbSNP
rs1031816032 3635 dbSNP
rs1042587852 3642 dbSNP
rs890314645 3644 dbSNP
rs1350078672 3652 dbSNP
rs1445465349 3657 dbSNP
rs529191356 3661 dbSNP
rs780138428 3663 dbSNP
rs1409265875 3682 dbSNP
rs944591006 3683 dbSNP
rs1172130386 3704 dbSNP
rs182042807 3719 dbSNP
rs546150199 3720 dbSNP
rs900165671 3720 dbSNP
rs1292303844 3728 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agggcccuugaguaGUCAGAgg 5'
                        ||| ||  
Target 5' ---auucuguugccCAGGCUgg 3'
1 - 19
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000449302.3 | 3UTR | AUUCUGUUGCCCAGGCUGGAGUGCAGUGGCACG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
108 hsa-miR-873-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT081178 MIDN midnolin 2 4
MIRT109809 ZFX zinc finger protein, X-linked 2 4
MIRT242383 TMC5 transmembrane channel like 5 2 4
MIRT444003 METRN meteorin, glial cell differentiation regulator 2 4
MIRT444097 SEPHS1 selenophosphate synthetase 1 2 2
MIRT446158 RPL12 ribosomal protein L12 2 2
MIRT446859 SAMD9L sterile alpha motif domain containing 9 like 2 2
MIRT447275 FZD5 frizzled class receptor 5 2 2
MIRT447391 TMPRSS15 transmembrane protease, serine 15 2 2
MIRT448817 FKBP1A FK506 binding protein 1A 2 4
MIRT450582 HIST1H2BG histone cluster 1 H2B family member g 2 2
MIRT451776 USP36 ubiquitin specific peptidase 36 2 2
MIRT457961 ABCC5 ATP binding cassette subfamily C member 5 2 4
MIRT458424 KLHL38 kelch like family member 38 2 4
MIRT461383 SLFN12L schlafen family member 12 like 2 2
MIRT467793 SLC2A14 solute carrier family 2 member 14 2 2
MIRT476517 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT480290 C7orf73 short transmembrane mitochondrial protein 1 2 4
MIRT482745 HES7 hes family bHLH transcription factor 7 2 10
MIRT483189 HIST1H2AH histone cluster 1 H2A family member h 2 6
MIRT486545 DCTN4 dynactin subunit 4 2 2
MIRT486581 ZNF619 zinc finger protein 619 2 2
MIRT492604 POLR3E RNA polymerase III subunit E 2 2
MIRT494130 DCAF7 DDB1 and CUL4 associated factor 7 2 6
MIRT496023 ZBED3 zinc finger BED-type containing 3 2 2
MIRT497121 NBEAL1 neurobeachin like 1 2 2
MIRT497400 TMEM245 transmembrane protein 245 2 2
MIRT501410 RANBP10 RAN binding protein 10 2 2
MIRT510947 PPTC7 PTC7 protein phosphatase homolog 2 6
MIRT512494 ARID2 AT-rich interaction domain 2 2 2
MIRT512595 ZNF783 zinc finger family member 783 2 2
MIRT512612 CNTN4 contactin 4 2 2
MIRT517808 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT520686 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT526179 HEPH hephaestin 2 2
MIRT532568 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT533979 TADA2A transcriptional adaptor 2A 2 2
MIRT538622 CCSER2 coiled-coil serine rich protein 2 2 4
MIRT539703 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539806 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT540422 FAM83F family with sequence similarity 83 member F 2 2
MIRT540506 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540619 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT542423 ZNF331 zinc finger protein 331 2 2
MIRT542454 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT543383 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT544777 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT544923 ERCC4 ERCC excision repair 4, endonuclease catalytic subunit 2 2
MIRT549768 ZNF611 zinc finger protein 611 2 4
MIRT551242 COLEC10 collectin subfamily member 10 2 2
MIRT560474 ENSA endosulfine alpha 2 2
MIRT569738 GPR173 G protein-coupled receptor 173 2 2
MIRT571297 CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 2 2
MIRT572345 CKAP2L cytoskeleton associated protein 2 like 2 2
MIRT573112 ERBB2IP erbb2 interacting protein 2 2
MIRT607744 ANGPT4 angiopoietin 4 2 2
MIRT607903 SPRYD4 SPRY domain containing 4 2 2
MIRT611744 SERPING1 serpin family G member 1 2 4
MIRT615101 BNC2 basonuclin 2 2 2
MIRT619124 CD40LG CD40 ligand 2 2
MIRT625572 ANKRD42 ankyrin repeat domain 42 2 2
MIRT629038 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633986 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635675 COX18 COX18, cytochrome c oxidase assembly factor 2 4
MIRT637471 DEFB105B defensin beta 105B 2 4
MIRT637503 DEFB105A defensin beta 105A 2 4
MIRT639735 MAP2K2 mitogen-activated protein kinase kinase 2 2 2
MIRT640730 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT645364 C9orf47 chromosome 9 open reading frame 47 2 2
MIRT647938 RNF152 ring finger protein 152 2 2
MIRT649400 SH2D4A SH2 domain containing 4A 2 2
MIRT656860 KIN Kin17 DNA and RNA binding protein 2 2
MIRT663470 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT663507 NKAPL NFKB activating protein like 2 4
MIRT667690 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT677403 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT678682 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT678789 NUPL2 nucleoporin like 2 2 2
MIRT680649 KIAA1456 KIAA1456 2 2
MIRT682450 MTX3 metaxin 3 2 2
MIRT682740 CA6 carbonic anhydrase 6 2 2
MIRT684421 TUFT1 tuftelin 1 2 2
MIRT690535 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT690595 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690771 PLA2G2C phospholipase A2 group IIC 2 2
MIRT692233 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693667 MXRA7 matrix remodeling associated 7 2 2
MIRT695551 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695870 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT696214 LYZ lysozyme 2 2
MIRT698368 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT700795 PHTF2 putative homeodomain transcription factor 2 2 2
MIRT701640 MYLK3 myosin light chain kinase 3 2 2
MIRT702989 HERPUD2 HERPUD family member 2 2 2
MIRT703627 FBXL3 F-box and leucine rich repeat protein 3 2 2
MIRT703783 FAM102B family with sequence similarity 102 member B 2 2
MIRT704293 DDX19B DEAD-box helicase 19B 2 2
MIRT704828 CDC73 cell division cycle 73 2 2
MIRT705014 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT708480 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT710770 PHF7 PHD finger protein 7 2 2
MIRT718918 TRIM66 tripartite motif containing 66 2 2
MIRT720390 ZNF549 zinc finger protein 549 2 2
MIRT720593 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT723515 SIGLEC8 sialic acid binding Ig like lectin 8 2 2
MIRT724458 PRKX protein kinase, X-linked 2 2
MIRT737267 UMAD1 UBAP1-MVB12-associated (UMA) domain containing 1 3 0
MIRT737356 ZIC2 Zic family member 2 4 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-873 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-873 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-873 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-873 Cisplatin 5460033 NSC119875 approved resistant cell line (OE19)
hsa-mir-873 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-873 Decitabine 451668 approved sensitive tissue (esopheageal cancer)
hsa-miR-873-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-873-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-873-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-873-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-873-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-873-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-873-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-873-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-873-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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