pre-miRNA Information
pre-miRNA hsa-mir-4457   
Genomic Coordinates chr5: 1309310 - 1309377
Description Homo sapiens miR-4457 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4457
Sequence 43| UCACAAGGUAUUGACUGGCGUA |64
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1031676297 8 dbSNP
rs1249861366 14 dbSNP
rs115769169 17 dbSNP
rs968846507 19 dbSNP
rs540870271 20 dbSNP
rs993130937 22 dbSNP
Putative Targets

Gene Information
Gene Symbol AGTRAP   
Synonyms ATRAP
Description angiotensin II receptor associated protein
Transcript NM_001040197   
Other Transcripts NM_001040194 , NM_001040196 , NM_001040195 , NM_020350   
Expression
Putative miRNA Targets on AGTRAP
3'UTR of AGTRAP
(miRNA target sites are highlighted)
>AGTRAP|NM_001040197|3'UTR
   1 GCTCCTGGTCCACACTGGTTTCCTTGGGTCTTCTCAGGACCGTAGTGCCTACCAGACGATTGACTCAGCAGAGGCGCCCG
  81 CAGATCCCTTTGCAGTCCCAGAGGGCAGGAGTCAAGATGCCCGAGGGTACTGAAGCCAGCCACGCTGCGCCCGGCCCTGC
 161 CCCGGGCCTTCCTCGTGCCTGGGAGGTCGTTCTAGGGATGCTCCTGACCTCCGTCTCTTGGACCTAAGATGGAATGTGTC
 241 CCCAGCTCAGGGATTGCCTGAACCAAGAGGCCAGGAGCCCCCATGGGCCGCCCAGTACCATGCACACTCCTGTCCCGAAC
 321 TCCCTGAGGCCTCCCCTCCCTTCAGGGCACCCACTGGTTCCCAGGCTGGAACCAGGGTCTCTCTTTACCTCCTACCCCAT
 401 GGTGGCACCACAGAGGCCCTCAGCCGAGTCCTGCCTGAGTGTTGCAAGCTCAGGCCTTTAAGGACTGCTGATGCCCCCTC
 481 AGGCCTCCCCCAAGTTTGCTGGGCTTTGGTGGAAGCCCTGAGAGCTTCAGGTCCTGCTCAGCCCGAGGAGCAGTCTGGCA
 561 TGGGAGTGAGGCCCCGTCCTTCTCACTGCCTGGTCACATGGTGCCTAGGGATGCAGGGCTGGAGGCCAGAGGTGTCAGCA
 641 ACACTGTGTCCCACCACAACCTCCAGCCTCCCTTTTCAGAGCACAGCATTAAAGTTTGGGGAATTCTGTAGAAAAAAAAA
 721 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auGCGGUCAGUUAUGGAACACu 5'
            | ||:| |  | ||| ||| 
Target 5' tgCCCCGGGC-CTTCCTCGTGc 3'
158 - 178 119.00 -11.70
2
miRNA  3' augcgGUCAGUUAUGGAACACu 5'
               || | : | ||||| | 
Target 5' gtccaCACTGGTTTCCTTGGGt 3'
8 - 29 117.00 -12.50
3
miRNA  3' auGCGGUCAGUUAUGGAACACu 5'
            |||| |  :|| |||| || 
Target 5' ggCGCCCGCAGATCCCTT-TGc 3'
73 - 93 112.00 -11.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM8209473 4 COSMIC
COSM9422149 6 COSMIC
COSM8084880 12 COSMIC
COSM675098 18 COSMIC
COSN19634581 57 COSMIC
COSN5264760 58 COSMIC
COSN32120130 445 COSMIC
COSN8888806 623 COSMIC
COSN19249158 771 COSMIC
COSN32120131 884 COSMIC
COSN6504494 1086 COSMIC
COSN16548507 1125 COSMIC
COSN28868654 1382 COSMIC
COSN26435114 1399 COSMIC
COSN8861322 1404 COSMIC
COSN26564162 1418 COSMIC
COSN24308167 1451 COSMIC
COSM9685763 1500 COSMIC
COSM7836411 1503 COSMIC
COSM8483693 1509 COSMIC
COSM9875671 1509 COSMIC
COSM7889940 1519 COSMIC
COSM7890080 1520 COSMIC
COSM9012411 1529 COSMIC
COSM3667321 1534 COSMIC
COSM8252523 1539 COSMIC
COSM9708354 1554 COSMIC
COSM9287041 1589 COSMIC
COSM4660449 1592 COSMIC
COSN30138012 1610 COSMIC
COSN13459279 1615 COSMIC
COSN30483314 1619 COSMIC
COSN30521226 1632 COSMIC
COSN505183 1633 COSMIC
COSN31544079 1642 COSMIC
COSN31963387 1678 COSMIC
COSN15668277 1682 COSMIC
COSN31960177 1870 COSMIC
COSN27023418 1948 COSMIC
COSN1403097 2035 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs527269355 3 dbSNP
rs370799877 15 dbSNP
rs909634555 16 dbSNP
rs770317840 19 dbSNP
rs1409520926 21 dbSNP
rs775926521 25 dbSNP
rs1163933772 26 dbSNP
rs763055837 28 dbSNP
rs374088316 29 dbSNP
rs367635472 31 dbSNP
rs1042939462 32 dbSNP
rs17875952 34 dbSNP
rs1446321379 35 dbSNP
rs1277897180 36 dbSNP
rs1375598387 40 dbSNP
rs767731457 41 dbSNP
rs1289739688 42 dbSNP
rs750177023 44 dbSNP
rs1215882162 45 dbSNP
rs373254364 50 dbSNP
rs766338621 51 dbSNP
rs753762225 56 dbSNP
rs11121819 57 dbSNP
rs752255981 58 dbSNP
rs1181215701 64 dbSNP
rs758062757 65 dbSNP
rs1372611143 71 dbSNP
rs1408574797 78 dbSNP
rs551107589 82 dbSNP
rs562850963 89 dbSNP
rs533429433 90 dbSNP
rs1288789191 95 dbSNP
rs1044080879 102 dbSNP
rs1223238133 107 dbSNP
rs1351650104 110 dbSNP
rs1479997608 132 dbSNP
rs1216059832 134 dbSNP
rs551563359 135 dbSNP
rs1179985257 136 dbSNP
rs1253842250 139 dbSNP
rs1283967538 140 dbSNP
rs1490842233 141 dbSNP
rs566907864 151 dbSNP
rs749916374 152 dbSNP
rs1431831573 153 dbSNP
rs531816487 155 dbSNP
rs534176254 155 dbSNP
rs375624676 158 dbSNP
rs1427882028 161 dbSNP
rs1310431888 162 dbSNP
rs1351641027 167 dbSNP
rs1414616059 168 dbSNP
rs1282805864 173 dbSNP
rs1365232602 177 dbSNP
rs1229698986 189 dbSNP
rs1439903961 190 dbSNP
rs1016552156 197 dbSNP
rs369829113 199 dbSNP
rs762458566 206 dbSNP
rs1202399914 208 dbSNP
rs1276756643 216 dbSNP
rs1040541706 223 dbSNP
rs1358075503 230 dbSNP
rs867779978 232 dbSNP
rs549344580 233 dbSNP
rs766339161 236 dbSNP
rs550282904 237 dbSNP
rs994042493 239 dbSNP
rs1026574333 240 dbSNP
rs1447808442 242 dbSNP
rs1170552427 243 dbSNP
rs370899458 244 dbSNP
rs1055465058 248 dbSNP
rs1384915341 249 dbSNP
rs149114663 259 dbSNP
rs537656758 265 dbSNP
rs1017003488 269 dbSNP
rs1336646250 273 dbSNP
rs988524881 282 dbSNP
rs912905041 290 dbSNP
rs947112356 291 dbSNP
rs969150704 302 dbSNP
rs1284492496 320 dbSNP
rs980503161 328 dbSNP
rs188826167 338 dbSNP
rs1299176923 340 dbSNP
rs577687749 343 dbSNP
rs942589932 354 dbSNP
rs144158918 355 dbSNP
rs946615478 357 dbSNP
rs1210558731 364 dbSNP
rs1247707478 365 dbSNP
rs1258597924 368 dbSNP
rs1447906003 378 dbSNP
rs1190684245 381 dbSNP
rs1390901204 383 dbSNP
rs553567979 386 dbSNP
rs922407497 387 dbSNP
rs1415459318 394 dbSNP
rs181308778 397 dbSNP
rs1386821344 403 dbSNP
rs1047843990 409 dbSNP
rs886517138 412 dbSNP
rs1378044235 415 dbSNP
rs542210184 420 dbSNP
rs1006247726 424 dbSNP
rs1445974660 425 dbSNP
rs901897560 431 dbSNP
rs1273077718 432 dbSNP
rs1038086374 435 dbSNP
rs1164839414 438 dbSNP
rs754891480 441 dbSNP
rs1001759706 442 dbSNP
rs888075384 444 dbSNP
rs571774142 446 dbSNP
rs1248847196 459 dbSNP
rs1035869741 468 dbSNP
rs368128868 473 dbSNP
rs186158306 474 dbSNP
rs904872726 477 dbSNP
rs573954964 480 dbSNP
rs544043894 484 dbSNP
rs374760972 490 dbSNP
rs185321729 494 dbSNP
rs978469368 501 dbSNP
rs1385793108 508 dbSNP
rs1034769604 511 dbSNP
rs17875954 512 dbSNP
rs988023555 518 dbSNP
rs1287595177 521 dbSNP
rs964000476 523 dbSNP
rs1229997827 532 dbSNP
rs1252341372 533 dbSNP
rs968013786 535 dbSNP
rs979773819 537 dbSNP
rs976598247 541 dbSNP
rs910448273 542 dbSNP
rs533348664 547 dbSNP
rs1182149030 550 dbSNP
rs922518651 551 dbSNP
rs943377426 552 dbSNP
rs1183338568 556 dbSNP
rs1368203060 563 dbSNP
rs1457101241 568 dbSNP
rs551891913 570 dbSNP
rs976022855 571 dbSNP
rs1424706987 581 dbSNP
rs1254877644 584 dbSNP
rs560565538 585 dbSNP
rs923393102 586 dbSNP
rs929379467 600 dbSNP
rs1411519938 602 dbSNP
rs1288750460 607 dbSNP
rs527690536 608 dbSNP
rs375589345 609 dbSNP
rs1421484722 610 dbSNP
rs549360584 622 dbSNP
rs907978444 623 dbSNP
rs1273182106 626 dbSNP
rs1484332296 635 dbSNP
rs1206414968 638 dbSNP
rs1172475243 647 dbSNP
rs1255941582 647 dbSNP
rs1185027409 652 dbSNP
rs1369833117 654 dbSNP
rs942087936 660 dbSNP
rs1167427948 661 dbSNP
rs1424203897 662 dbSNP
rs772296523 664 dbSNP
rs567583703 666 dbSNP
rs1037722874 673 dbSNP
rs191057262 676 dbSNP
rs1315190954 682 dbSNP
rs1383787612 683 dbSNP
rs1449024839 688 dbSNP
rs1001790624 698 dbSNP
rs1057418632 699 dbSNP
rs906074079 702 dbSNP
rs896063297 717 dbSNP
rs1207742336 722 dbSNP
rs1034674866 732 dbSNP
rs1010433168 733 dbSNP
rs1302412124 744 dbSNP
rs1020848364 745 dbSNP
rs549786961 749 dbSNP
rs11121820 753 dbSNP
rs779121665 754 dbSNP
rs1017940927 760 dbSNP
rs1187495720 761 dbSNP
rs17875991 766 dbSNP
rs976377646 769 dbSNP
rs922548368 770 dbSNP
rs1376998447 776 dbSNP
rs1464409934 781 dbSNP
rs1304391219 785 dbSNP
rs1265380706 788 dbSNP
rs1434688022 795 dbSNP
rs968306508 801 dbSNP
rs1324639633 815 dbSNP
rs951284315 819 dbSNP
rs1255006549 823 dbSNP
rs1482008975 824 dbSNP
rs1187731426 825 dbSNP
rs1263874420 826 dbSNP
rs1235983296 830 dbSNP
rs553495185 836 dbSNP
rs982600311 838 dbSNP
rs964592594 846 dbSNP
rs772229218 855 dbSNP
rs1477445168 859 dbSNP
rs182430503 864 dbSNP
rs973858018 865 dbSNP
rs768717024 868 dbSNP
rs186349783 871 dbSNP
rs1186582928 872 dbSNP
rs17875992 877 dbSNP
rs1175651842 880 dbSNP
rs983955055 881 dbSNP
rs1057141652 890 dbSNP
rs1178098542 891 dbSNP
rs909274642 892 dbSNP
rs942195620 908 dbSNP
rs17875956 918 dbSNP
rs139934897 919 dbSNP
rs1293021340 920 dbSNP
rs1360521312 924 dbSNP
rs772884603 929 dbSNP
rs904648759 931 dbSNP
rs1328951346 932 dbSNP
rs1285685557 950 dbSNP
rs1000365655 952 dbSNP
rs1265921290 955 dbSNP
rs1368781237 962 dbSNP
rs1018473064 967 dbSNP
rs1264388482 971 dbSNP
rs544924473 972 dbSNP
rs997828337 977 dbSNP
rs1056163875 978 dbSNP
rs1269477161 979 dbSNP
rs1472181468 982 dbSNP
rs1179762644 994 dbSNP
rs1413815387 996 dbSNP
rs1218231725 1006 dbSNP
rs1029263893 1007 dbSNP
rs369346191 1008 dbSNP
rs951314965 1012 dbSNP
rs983073218 1020 dbSNP
rs1016771324 1022 dbSNP
rs1214378030 1024 dbSNP
rs1304348802 1030 dbSNP
rs1350392919 1033 dbSNP
rs1408479788 1034 dbSNP
rs1290606349 1035 dbSNP
rs1374465745 1043 dbSNP
rs17875957 1044 dbSNP
rs1042536197 1046 dbSNP
rs1478251083 1057 dbSNP
rs532715419 1061 dbSNP
rs903569537 1067 dbSNP
rs377019344 1070 dbSNP
rs927398295 1071 dbSNP
rs17875958 1075 dbSNP
rs1421104855 1078 dbSNP
rs560580381 1079 dbSNP
rs1181534680 1083 dbSNP
rs10864533 1086 dbSNP
rs997375650 1090 dbSNP
rs1164313657 1091 dbSNP
rs1030219186 1095 dbSNP
rs1428421787 1096 dbSNP
rs1417891850 1113 dbSNP
rs1310342392 1114 dbSNP
rs543068181 1120 dbSNP
rs983431829 1121 dbSNP
rs909294999 1122 dbSNP
rs1436263955 1128 dbSNP
rs1315176998 1130 dbSNP
rs963448094 1133 dbSNP
rs1042399265 1142 dbSNP
rs151074679 1143 dbSNP
rs17875959 1151 dbSNP
rs1039851962 1153 dbSNP
rs1235461934 1154 dbSNP
rs1462831751 1160 dbSNP
rs1184401671 1166 dbSNP
rs899612449 1167 dbSNP
rs1447713341 1170 dbSNP
rs997864375 1171 dbSNP
rs370608489 1177 dbSNP
rs190805006 1178 dbSNP
rs1029293619 1179 dbSNP
rs1352363324 1181 dbSNP
rs1361219223 1185 dbSNP
rs6677313 1196 dbSNP
rs532335361 1217 dbSNP
rs945047169 1218 dbSNP
rs1432254779 1224 dbSNP
rs1452097403 1228 dbSNP
rs1271915250 1239 dbSNP
rs1340005680 1247 dbSNP
rs1042049114 1248 dbSNP
rs1017300640 1250 dbSNP
rs547149131 1267 dbSNP
rs183000686 1280 dbSNP
rs981037556 1283 dbSNP
rs78784029 1285 dbSNP
rs751085003 1286 dbSNP
rs72638664 1288 dbSNP
rs900357845 1289 dbSNP
rs997280684 1290 dbSNP
rs1030665381 1301 dbSNP
rs950628554 1302 dbSNP
rs752434490 1320 dbSNP
rs112411700 1324 dbSNP
rs1405284188 1325 dbSNP
rs1163206070 1327 dbSNP
rs1455262329 1328 dbSNP
rs1319719228 1331 dbSNP
rs1356649972 1333 dbSNP
rs368510058 1334 dbSNP
rs1447918224 1336 dbSNP
rs1326465429 1337 dbSNP
rs1331652503 1342 dbSNP
rs1435704852 1345 dbSNP
rs1375654852 1353 dbSNP
rs1443997727 1357 dbSNP
rs559347435 1358 dbSNP
rs1223891651 1360 dbSNP
rs371237960 1363 dbSNP
rs1285446824 1365 dbSNP
rs963478406 1368 dbSNP
rs980167945 1377 dbSNP
rs1285070725 1381 dbSNP
rs1451085301 1389 dbSNP
rs927331707 1390 dbSNP
rs1227686821 1392 dbSNP
rs992871851 1397 dbSNP
rs1287588344 1398 dbSNP
rs578013704 1399 dbSNP
rs917334746 1403 dbSNP
rs966336985 1404 dbSNP
rs569675893 1405 dbSNP
rs755895165 1423 dbSNP
rs192798353 1424 dbSNP
rs977435034 1431 dbSNP
rs556819859 1433 dbSNP
rs1476141412 1434 dbSNP
rs370929413 1435 dbSNP
rs374831274 1436 dbSNP
rs780586718 1438 dbSNP
rs1465348092 1441 dbSNP
rs368674106 1443 dbSNP
rs376158319 1446 dbSNP
rs1442932025 1454 dbSNP
rs1040292613 1460 dbSNP
rs776387374 1460 dbSNP
rs774349393 1461 dbSNP
rs1241506160 1463 dbSNP
rs1280327311 1464 dbSNP
rs936313135 1466 dbSNP
rs921401191 1467 dbSNP
rs1235670023 1469 dbSNP
rs1038776798 1470 dbSNP
rs578158648 1471 dbSNP
rs545636109 1472 dbSNP
rs1274599631 1473 dbSNP
rs1437922265 1474 dbSNP
rs773375840 1475 dbSNP
rs1254770232 1492 dbSNP
rs760490715 1495 dbSNP
rs1490656809 1496 dbSNP
rs371795218 1498 dbSNP
rs375192931 1502 dbSNP
rs759509796 1505 dbSNP
rs142297789 1508 dbSNP
rs758046575 1509 dbSNP
rs1051596331 1515 dbSNP
rs372020062 1519 dbSNP
rs751218967 1522 dbSNP
rs756955279 1524 dbSNP
rs201389149 1525 dbSNP
rs375394701 1529 dbSNP
rs755420270 1531 dbSNP
rs1307311214 1532 dbSNP
rs1394115366 1536 dbSNP
rs139724647 1542 dbSNP
rs146107418 1543 dbSNP
rs1242793272 1544 dbSNP
rs759090894 1544 dbSNP
rs563810058 1546 dbSNP
rs543179732 1547 dbSNP
rs17875960 1548 dbSNP
rs776506606 1555 dbSNP
rs1262299303 1562 dbSNP
rs759458527 1564 dbSNP
rs765257979 1570 dbSNP
rs1242477974 1572 dbSNP
rs775606087 1575 dbSNP
rs765399828 1576 dbSNP
rs1393371560 1581 dbSNP
rs201347006 1584 dbSNP
rs898420016 1587 dbSNP
rs763462111 1588 dbSNP
rs369121639 1589 dbSNP
rs561356662 1590 dbSNP
rs1181329409 1596 dbSNP
rs769524639 1596 dbSNP
rs531775665 1602 dbSNP
rs1386606842 1605 dbSNP
rs779364278 1607 dbSNP
rs748705898 1608 dbSNP
rs372633633 1610 dbSNP
rs777679033 1611 dbSNP
rs12132828 1612 dbSNP
rs747121687 1613 dbSNP
rs183291546 1615 dbSNP
rs1013416381 1616 dbSNP
rs374035521 1619 dbSNP
rs745623857 1620 dbSNP
rs531367893 1621 dbSNP
rs775446587 1622 dbSNP
rs762759281 1626 dbSNP
rs1455736503 1628 dbSNP
rs1214737248 1629 dbSNP
rs764096530 1630 dbSNP
rs367556539 1631 dbSNP
rs1452322585 1632 dbSNP
rs761445223 1633 dbSNP
rs1386175410 1634 dbSNP
rs1461192863 1638 dbSNP
rs750118789 1641 dbSNP
rs371737127 1642 dbSNP
rs765540741 1645 dbSNP
rs1469542100 1646 dbSNP
rs547210384 1649 dbSNP
rs758768703 1650 dbSNP
rs565565974 1652 dbSNP
rs778398064 1655 dbSNP
rs529830956 1656 dbSNP
rs1211651571 1659 dbSNP
rs1461421366 1660 dbSNP
rs1274809602 1668 dbSNP
rs1187400816 1669 dbSNP
rs1258973761 1671 dbSNP
rs1470025825 1675 dbSNP
rs1214534530 1677 dbSNP
rs757394963 1679 dbSNP
rs1417360326 1680 dbSNP
rs1184611526 1681 dbSNP
rs1364818993 1682 dbSNP
rs1475157932 1690 dbSNP
rs781540219 1691 dbSNP
rs1397097183 1692 dbSNP
rs1461685595 1695 dbSNP
rs1297197073 1697 dbSNP
rs1393729594 1699 dbSNP
rs975598784 1702 dbSNP
rs17875961 1705 dbSNP
rs1328935653 1710 dbSNP
rs934195481 1714 dbSNP
rs1249286484 1715 dbSNP
rs1354817437 1717 dbSNP
rs1231347743 1718 dbSNP
rs1294955941 1721 dbSNP
rs770170953 1722 dbSNP
rs974345670 1723 dbSNP
rs569603637 1724 dbSNP
rs1479707715 1727 dbSNP
rs1287199153 1731 dbSNP
rs1364125665 1733 dbSNP
rs1197685417 1734 dbSNP
rs1301147745 1744 dbSNP
rs1344091995 1745 dbSNP
rs1478426612 1749 dbSNP
rs1401897803 1754 dbSNP
rs369321858 1756 dbSNP
rs780346652 1757 dbSNP
rs1323813756 1759 dbSNP
rs1207666868 1760 dbSNP
rs537059896 1760 dbSNP
rs1052055426 1764 dbSNP
rs747073867 1766 dbSNP
rs898121245 1767 dbSNP
rs886259277 1768 dbSNP
rs1266583835 1770 dbSNP
rs940488119 1773 dbSNP
rs187824824 1776 dbSNP
rs1429654481 1781 dbSNP
rs571933436 1783 dbSNP
rs1001573008 1784 dbSNP
rs1454368425 1790 dbSNP
rs757751071 1798 dbSNP
rs1293514522 1799 dbSNP
rs1402437632 1802 dbSNP
rs1413463044 1803 dbSNP
rs1364262185 1810 dbSNP
rs539371108 1819 dbSNP
rs1034349713 1823 dbSNP
rs1284362040 1824 dbSNP
rs529604721 1831 dbSNP
rs12955 1843 dbSNP
rs1362450731 1844 dbSNP
rs530765354 1844 dbSNP
rs1270756962 1846 dbSNP
rs8617 1856 dbSNP
rs1304376161 1860 dbSNP
rs1318271755 1862 dbSNP
rs1215868287 1869 dbSNP
rs1020774299 1870 dbSNP
rs1290326204 1883 dbSNP
rs1277416822 1886 dbSNP
rs1338169309 1892 dbSNP
rs1235091698 1893 dbSNP
rs1269365620 1898 dbSNP
rs1014328971 1901 dbSNP
rs1175767727 1919 dbSNP
rs1217339112 1923 dbSNP
rs1410419359 1934 dbSNP
rs1419830671 1935 dbSNP
rs1275705993 1937 dbSNP
rs192750191 1940 dbSNP
rs1383417152 1945 dbSNP
rs1427134003 1952 dbSNP
rs1304256365 1954 dbSNP
rs1370375079 1957 dbSNP
rs1344551242 1958 dbSNP
rs1375092455 1960 dbSNP
rs1198858428 1961 dbSNP
rs1356585041 1966 dbSNP
rs555047072 1967 dbSNP
rs979299098 1969 dbSNP
rs1437072872 1974 dbSNP
rs14962 1982 dbSNP
rs967877339 2000 dbSNP
rs998918964 2006 dbSNP
rs1181449829 2007 dbSNP
rs1033232222 2010 dbSNP
rs1033432173 2011 dbSNP
rs576416904 2012 dbSNP
rs781675344 2015 dbSNP
rs1028562129 2017 dbSNP
rs367931219 2018 dbSNP
rs1408655557 2020 dbSNP
rs1128055 2022 dbSNP
rs1172994623 2024 dbSNP
rs1128059 2025 dbSNP
rs183691853 2027 dbSNP
rs1261605871 2028 dbSNP
rs1335650334 2041 dbSNP
rs1128065 2042 dbSNP
rs1200005298 2043 dbSNP
rs1315065189 2068 dbSNP
rs1377904800 2070 dbSNP
rs1338668895 2078 dbSNP
rs773431143 2079 dbSNP
rs1212689910 2100 dbSNP
rs939768086 2103 dbSNP
rs1274884582 2108 dbSNP
rs1307836949 2111 dbSNP
rs1477490689 2111 dbSNP
rs6540993 2116 dbSNP
rs1381636218 2117 dbSNP
rs1128084 2120 dbSNP
rs919660455 2121 dbSNP
rs12064912 2123 dbSNP
rs940546071 2124 dbSNP
rs1054776173 2127 dbSNP
rs547940822 2131 dbSNP
rs1188758629 2136 dbSNP
rs949252751 2139 dbSNP
rs1297535301 2141 dbSNP
rs780352993 2144 dbSNP
rs1358512857 2161 dbSNP
rs1388348494 2165 dbSNP
rs1323952838 2174 dbSNP
rs1330806556 2175 dbSNP
rs1175354144 2176 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' augcggucaguuauggaaCACu 5'
                            ||| 
Target 5' cugccucggccucccaaaGUGc 3'
11 - 32
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000376627.2 | 3UTR | UGUGAUCCACCUGCCUCGGCCUCCCAAAGUGCUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
83 hsa-miR-4457 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT098032 SOBP sine oculis binding protein homolog 2 2
MIRT202580 PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 2 6
MIRT247137 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT349266 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT363756 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2 2
MIRT443586 FAM84B family with sequence similarity 84 member B 2 2
MIRT452333 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 2
MIRT453864 ZBTB40 zinc finger and BTB domain containing 40 2 4
MIRT471486 PDE4D phosphodiesterase 4D 2 4
MIRT476290 GMFB glia maturation factor beta 2 8
MIRT479897 CCDC117 coiled-coil domain containing 117 2 4
MIRT484251 ANK1 ankyrin 1 2 2
MIRT491473 TMEM214 transmembrane protein 214 2 2
MIRT493804 GAN gigaxonin 2 6
MIRT499252 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT502271 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 4
MIRT504651 RPL9 ribosomal protein L9 2 6
MIRT505211 UBN2 ubinuclein 2 2 8
MIRT508952 SNRPB small nuclear ribonucleoprotein polypeptides B and B1 2 4
MIRT512691 POP1 POP1 homolog, ribonuclease P/MRP subunit 2 2
MIRT513320 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT513870 HOXA5 homeobox A5 2 2
MIRT517342 ZNF529 zinc finger protein 529 2 4
MIRT518947 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT520867 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT528325 GIGYF2 GRB10 interacting GYF protein 2 2 2
MIRT531990 SLCO1B3 solute carrier organic anion transporter family member 1B3 2 2
MIRT533298 USP46 ubiquitin specific peptidase 46 2 2
MIRT545257 TRIM36 tripartite motif containing 36 2 4
MIRT547038 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT556103 MOAP1 modulator of apoptosis 1 2 2
MIRT558321 DR1 down-regulator of transcription 1 2 2
MIRT558521 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT560906 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT568448 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT570586 OTUD7B OTU deubiquitinase 7B 2 2
MIRT572799 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT573863 C9orf78 chromosome 9 open reading frame 78 2 2
MIRT575058 P2ry1 purinergic receptor P2Y, G-protein coupled 1 2 5
MIRT609931 SLC38A1 solute carrier family 38 member 1 2 4
MIRT610836 ZNF585A zinc finger protein 585A 2 4
MIRT611474 P2RY1 purinergic receptor P2Y1 2 7
MIRT613569 YY2 YY2 transcription factor 2 2
MIRT618626 GREB1 growth regulation by estrogen in breast cancer 1 2 2
MIRT620606 SAP30 Sin3A associated protein 30 2 2
MIRT621017 CLSTN3 calsyntenin 3 2 4
MIRT635314 FAM179A TOG array regulator of axonemal microtubules 2 2 2
MIRT635919 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT640598 TM9SF4 transmembrane 9 superfamily member 4 2 2
MIRT641784 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 2 4
MIRT644067 IQCE IQ motif containing E 2 2
MIRT648288 TRAPPC2L trafficking protein particle complex 2 like 2 2
MIRT658085 FOXR2 forkhead box R2 2 2
MIRT659077 DEPTOR DEP domain containing MTOR interacting protein 2 2
MIRT665307 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT665975 SYTL4 synaptotagmin like 4 2 2
MIRT666302 SLC25A25 solute carrier family 25 member 25 2 2
MIRT674906 RASSF9 Ras association domain family member 9 2 2
MIRT680086 THAP1 THAP domain containing 1 2 2
MIRT681488 DIP2A disco interacting protein 2 homolog A 2 2
MIRT691244 DFNB59 pejvakin 2 2
MIRT692362 AGTRAP angiotensin II receptor associated protein 2 2
MIRT693035 MB21D1 Mab-21 domain containing 1 2 2
MIRT693837 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT694479 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT696070 ZNF264 zinc finger protein 264 2 2
MIRT696578 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696760 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 2
MIRT697307 ZNF652 zinc finger protein 652 2 2
MIRT700152 RNF115 ring finger protein 115 2 2
MIRT701056 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT701198 OTUD3 OTU deubiquitinase 3 2 2
MIRT701335 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT702656 ITGA3 integrin subunit alpha 3 2 2
MIRT703618 FBXO45 F-box protein 45 2 2
MIRT704673 CHTOP chromatin target of PRMT1 2 2
MIRT708894 ZNF780A zinc finger protein 780A 2 2
MIRT711620 DGKH diacylglycerol kinase eta 2 2
MIRT713745 TMEM81 transmembrane protein 81 2 2
MIRT719712 CD101 CD101 molecule 2 2
MIRT720294 DLGAP3 DLG associated protein 3 2 2
MIRT722606 CCDC152 coiled-coil domain containing 152 2 2
MIRT724566 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4457 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4457 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-4457 Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-4457 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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