pre-miRNA Information
pre-miRNA hsa-mir-4260   
Genomic Coordinates chr1: 209623444 - 209623510
Description Homo sapiens miR-4260 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4260
Sequence 11| CUUGGGGCAUGGAGUCCCA |29
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM7908770 6 COSMIC
COSN30117883 7 COSMIC
COSN26730871 12 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs372999583 2 dbSNP
rs1367351910 8 dbSNP
rs1266505194 15 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MEAF6   
Synonyms C1orf149, CENP-28, EAF6, NY-SAR-91
Description MYST/Esa1 associated factor 6
Transcript NM_022756   
Expression
Putative miRNA Targets on MEAF6
3'UTR of MEAF6
(miRNA target sites are highlighted)
>MEAF6|NM_022756|3'UTR
   1 AAGACACATTAGTGCAGAAGCTTCCAGGCTGTAGAGCCCTGCTTCCCTTCTCTGACCTCACAAAGATAAACATCCTTCAC
  81 CTGAGTTCGTGGCCATCCACCTCTGCTCTCCCAGACCCAGTGCCTGTGACTTTGAGTAGTTTGTTCTAAATGTGGTGACA
 161 AACAAGTCATTTCTGTAAGACATTGGGTCTTACTTTATGTCATTTTTAGTAACAGAACTGCAGGAAGATGAAGACAATGT
 241 TGTAATCCCAGCAAGTTGCTAACTGTGCGTTTCTCCCTTCTTAGAATGAATGTCTCCCCCAAAACTGGCTGGCACCAGCT
 321 TCATCTGTGATACCCTTCAAGAAATGTTCTCTGGTTTTGTTTTATGCTGAAAGTAGAACACAAGTCACATTTCAGATGGA
 401 GGCTGTAAATATCTGGCATTTTCTTATATTGTTTTATGTTTTCTTGTTTTTCTCTTGTTGTTTTTATCTTATTTTCTTTG
 481 GGGTTTTTTTGTAATGCCTTTGTACAGCTCATACTTTCCTGCTGACATATCTGATCATCTCTTTCATGCAGTTGCCAATA
 561 TTCATAACTGAAAATAATCTGGTTTATCATAAGTAAAATGGGAAACTTGCCTCTGTTTTTTGCAAGGGGAGGTAAAGAGT
 641 GTTTAGTAATTACCTATCTTAAATCTTTCTGAGTTGGTAGTAGATTCATGTTCAAGGAACAGGAAAAATGGAAAAACATA
 721 AGTTTAAATCAGTTCTTTTTAAATAACTTTTTATTCTTTTGTATAAATAAAATTTCACAGGCTTCAAATTCTCATGCTTT
 801 ACTTTTAAACCCGAGATTGTTTTTTCACTTATTTATTCATATCATGCCTTATGGAAATTTCTTTTTCTGTATTTTCTCTC
 881 TTTGCTGGTATTCACCTGATTAAATATTGCTCTAAAAATCACCATGGCATATGGAAAGTCTCAAAATTATACCAAAAGTG
 961 ATAACTTATGTCGTTCTTAAGTGGAGTGAAAGGATAGCATCAGTGAGAGCCAGTGTTGCCCACCAGGTCTCCCTTTCTTG
1041 GAGGGCTTGTTGGGGCTGAGGAATCTGCTAGTAATCGTTACCTGCCTCTAGTGCTGTGGTGAACTTGCGACAGGGTCTGG
1121 CTGCACATTGGAATCACCTGAGAAGCTTTAAAATACTCATGCCTGGATCCCATCCCTAGAGACTGGGGTACAGCCTAGTT
1201 ATTGGGAATTTCTTTAAAAGAGTTCCTGGGATTCTGATAAGAAGCCAGGTTGAGAACCACTACATTAGAAGACTGAATGG
1281 TTTAATTTACATCCTATGTTATGATTGGTCTAAGGGATAAGATTTGGGGTCTAACCTTTCCTTTCACTCTAGTTAGTCAT
1361 AGTCCTTGACTTATGCCTATATCTTTGTAAGAAATAGTATGTTTCATTTGTGATAGTATTGGTAGGGCTGAATATGGATG
1441 GCATCTACTGTAAAACAAGTCTACCTTGTCAGATGTGCAAAAGCTTTCACTCTTGTTCTCAAATAAACTTTTGTGGGTTT
1521 TTTTTTTTTTTTTTTTTTGACTCTGGCTATTTAGATCTTTGACTGTGTCTTTGGTAGCAGAACTCCAGTGTCAGGATTTT
1601 TAAGGAAATAGTTTCTTATATTTAGATTATTCCTTAAAAAAAAAAATCCTAGAAGCATTCTGTATTTTTTGTCTGTTGGT
1681 CTCCTTTGCTGGGAGGGAGGAGTGGGATGCCTACAGTTTCCTTCCTTTTGGGGAAAGCACACAGCAGACCTTAAAATATT
1761 TTTGACTCTTGGGCTGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGCGGATCACGAGGT
1841 CAGGAGATCGAGACCATCCTGGCGAACACAGTGAAACCCCATCTCTACTAAAAATGCAAAAAATTAGCTGAGCGTGGTGG
1921 CGGGTGCCGGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCTGGGAGGCGGAGCTTACAGTGAGC
2001 TGAGATAGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAATATTTTTGACTCTTAA
2081 CAGTTTGAGATTGCTAGAGATGGAATAGTACTGCTCTGTTGCGCCACTGCACTCCAGCAGCCTGGGCGACAGAGCGAGAC
2161 TCTGTCAAAAAAAAAAAAAAAAAGAAAGAATAGTACTGCTCTTAAAAAGATTATTTACGTATTTATGAAACTGCAGTGGG
2241 ATGCCTAGTTTCCTTCCCTCTGAGGAAAGCACACAGCAGACCTTAAAATATTTTTGACTCTCATAGTTTGACATTGCTGG
2321 AGACAGAATAGTACTGCTCTTAAAAAGATTATTTAAGTATTTATATATTTTATTTATTTATTTATTTATTTATTTATTTA
2401 TTGACAGGATCTTGCTCTGTCACCCAGGCTGGAGTGCAGCGGCCTGATCAAAGCTCAGTGCAGCCTCGAACTTCTGGGGT
2481 CAAGCCATCTTCCTGCTTCAGCCTTACTAGTACCTGGGACTATAGGTGCATGCCACCATTCCCAGCTAATTTAAAACATT
2561 TTTATTTTGTAATGATGGCTTCTTGCTATGTTGCCCAGGCTGGCCTCAAGCAGTCCTCCTGGCCTCAAGCAGTCCTTCTG
2641 CCTTGGCCTCCCAAAGTGCTGGGATTATAGGTATCAAGCAATTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGACTACAGG
2721 CATGCACCACCATGCCCATCTAAGTTTTGTATTTTTAGTGGAGATGGGGTTTTGCCATGATGGGCAGGCTGGTCTCGAAC
2801 TCCTGACCTCAGGTAATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCCTGGCACCTGGCAATAT
2881 AGAGTATTCTTGACATCTTGACCTGTGCAGTAAAGAAGATAATTAAAATGAGCGATAAATAGTCTAAGCTTGAAAGTTAA
2961 AGAGCCTAAGCTTGAAACACTCTGTGACTTAGTTTTTGCATTTATTCTGTCTTCTATGCCCCCCAACCTTACTCCAAATT
3041 AATGAGGCATTATTTTATTTATTTATTTTTTTGAGACAGAGTCTTGCTCTGTCGTCCAGGCTGGAGTGCAGTGGCACAAT
3121 CTTGGCTCACTGCTACCTCCGCCTCCAGGGTTCAAGCAATTATTCCGCCTCAGCCTCTCGAGTAGCTGAGACTACAGGCG
3201 CGTGCTACCACACCCAGCTAGTTTTTTTTTATTTTCAATAGAGACCGGGTTTCACCATATTGGCCAGGCTGGACTCAAAC
3281 TCCTGACTTCGTAATCCACCTGCCTCAGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACTGCACCCGGCCTAATGA
3361 GGCATTATTGCTTAAAAATTCACATCAAGCTGGGCATGGTGATATGCACCTTTAGTCCCAGCTGCTTGGGAGGCTTAGAG
3441 GCAGCAGGATCGCTTGAAGCCAGAAGTTCAAGGCTACAGTATGCTATGATCATTTCTGTGAATGGCCACTGCACTTCAGC
3521 CTGAGTAACGTAGCAAGACGCTGTCTCCAACAGAAAATTGACATCTGAAGCCTTGACTACAGGGGGACTATACTGGTTTA
3601 TGTGAAGTGTGGGGAGAGAGCAGGATTGTGCTTCTTTGTACACATTTGCTTCTCCCAGGATAGTGTCATAGTGCCTAGGA
3681 AGGTGATGTGTGTGTCAGATACAATGATAGTGAAAAGAAGGGATTGGAATTTTCATACCTGTGTCAGTCTAAATGAGCAT
3761 TACCTTGTCTGAATTGTCTAAGTGGTAAGCTTCGTGATTTGAAACAGTTTTCACTTTGAAAAACTGCTTCCGTGGATTAA
3841 AAGTTGTCACCACTAAAGTGGGCTGTGGTGGAGTCGATGCTGATCCTCACTTAGGGCAGTGGCCTCCAAGGGGAAGAGGG
3921 CACACAGGATGGCTGGGTGGGGGTGGGAAGAAAAGATTAGGCCTTTGATTTATATTCATTTTGAGGCTCAGCCTTATTTA
4001 GTTTCTCACTTTGGATGTATTTTATATATATACATCAAATATACATCAATATTAGTTCATTAGTACATGTAGGTCATTAA
4081 TTTATAAATAAAAGGTTGAACCACAATAAACTGCTGATAATTGTTTTTGATCTGTAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acccuGAGGUACGGGGUUc 5'
               ||||  |||:||| 
Target 5' cagtcCTCCTGGCCTCAAg 3'
2611 - 2629 138.00 -18.80
2
miRNA  3' acCCUGAGGU--ACGGGGUUc 5'
            | | ||||  ||||:||: 
Target 5' tcGTAATCCACCTGCCTCAGc 3'
3289 - 3309 127.00 -13.10
3
miRNA  3' acccuGAGGUACGGGGUUc 5'
               |||| ||||:||: 
Target 5' caattCTCC-TGCCTCAGc 3'
2679 - 2696 125.00 -16.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN23014342 10 COSMIC
COSN30534586 26 COSMIC
COSN30127255 36 COSMIC
COSN26984069 57 COSMIC
COSN30508094 85 COSMIC
COSN26984070 88 COSMIC
COSN31589695 89 COSMIC
COSN30472643 154 COSMIC
COSN6035083 170 COSMIC
COSN30139655 178 COSMIC
COSN15315235 201 COSMIC
COSN23014341 250 COSMIC
COSN13542281 256 COSMIC
COSN31603345 268 COSMIC
COSM6024704 294 COSMIC
COSM5561778 299 COSMIC
COSN31583153 341 COSMIC
COSN5168234 354 COSMIC
COSN28201946 418 COSMIC
COSN31596738 430 COSMIC
COSN31521054 465 COSMIC
COSN30119710 483 COSMIC
COSN1103849 557 COSMIC
COSN25762871 1041 COSMIC
COSN5168233 1061 COSMIC
COSN8638263 1360 COSMIC
COSN31588779 1387 COSMIC
COSN26574170 1465 COSMIC
COSN8638262 1513 COSMIC
rs9253 887 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1440109247 4 dbSNP
rs892104363 7 dbSNP
rs1486335552 8 dbSNP
rs770846243 10 dbSNP
rs1351015226 12 dbSNP
rs200096904 12 dbSNP
rs200633970 13 dbSNP
rs777119753 21 dbSNP
rs755824900 22 dbSNP
rs1225891061 24 dbSNP
rs752245969 25 dbSNP
rs376707573 26 dbSNP
rs1234144174 28 dbSNP
rs755329017 39 dbSNP
rs751709905 40 dbSNP
rs746634746 42 dbSNP
rs1429894992 45 dbSNP
rs1345762287 50 dbSNP
rs1435627085 56 dbSNP
rs1203782828 63 dbSNP
rs1251779537 66 dbSNP
rs372584814 83 dbSNP
rs867431615 88 dbSNP
rs1265942904 91 dbSNP
rs907890022 95 dbSNP
rs1159237087 99 dbSNP
rs926443962 103 dbSNP
rs1218011058 107 dbSNP
rs1307468941 111 dbSNP
rs987771857 112 dbSNP
rs1488143490 120 dbSNP
rs578261348 134 dbSNP
rs1411597996 146 dbSNP
rs1310922250 155 dbSNP
rs980641973 162 dbSNP
rs1221095755 166 dbSNP
rs1029354500 169 dbSNP
rs1285643255 169 dbSNP
rs930456259 193 dbSNP
rs556785483 196 dbSNP
rs215212 201 dbSNP
rs1021292543 203 dbSNP
rs190548739 209 dbSNP
rs1359590557 213 dbSNP
rs1442267112 215 dbSNP
rs1188656208 220 dbSNP
rs891437108 228 dbSNP
rs215211 230 dbSNP
rs536364192 231 dbSNP
rs751969532 235 dbSNP
rs1390865490 236 dbSNP
rs779455251 236 dbSNP
rs1171413948 237 dbSNP
rs1320025815 238 dbSNP
rs1403459437 239 dbSNP
rs767051370 240 dbSNP
rs1452046896 248 dbSNP
rs186893691 249 dbSNP
rs215210 250 dbSNP
rs762115268 251 dbSNP
rs763272914 254 dbSNP
rs532273657 255 dbSNP
rs200212339 256 dbSNP
rs1243269442 257 dbSNP
rs770945380 258 dbSNP
rs182535367 259 dbSNP
rs772804692 260 dbSNP
rs765798988 266 dbSNP
rs769131530 267 dbSNP
rs757941814 268 dbSNP
rs996998734 268 dbSNP
rs747844219 269 dbSNP
rs781059959 274 dbSNP
rs549550813 275 dbSNP
rs899338038 281 dbSNP
rs1037761432 283 dbSNP
rs1214511332 286 dbSNP
rs1240695218 287 dbSNP
rs369091863 294 dbSNP
rs375890810 297 dbSNP
rs1188237300 298 dbSNP
rs1443213988 299 dbSNP
rs780534754 301 dbSNP
rs1451458943 302 dbSNP
rs553543805 312 dbSNP
rs892136201 314 dbSNP
rs1271788829 316 dbSNP
rs1299681096 317 dbSNP
rs1229016284 318 dbSNP
rs561158420 325 dbSNP
rs776534016 327 dbSNP
rs1386188601 330 dbSNP
rs1393409025 333 dbSNP
rs939030198 334 dbSNP
rs904979157 340 dbSNP
rs1462675989 341 dbSNP
rs776792685 346 dbSNP
rs1051756374 351 dbSNP
rs933352814 359 dbSNP
rs930487379 361 dbSNP
rs542714132 362 dbSNP
rs921871988 365 dbSNP
rs1409975847 368 dbSNP
rs1421043654 376 dbSNP
rs761290329 378 dbSNP
rs1277113629 381 dbSNP
rs1268417200 387 dbSNP
rs372931847 396 dbSNP
rs1208471346 397 dbSNP
rs975069982 398 dbSNP
rs1449921946 414 dbSNP
rs1208235373 426 dbSNP
rs1266778677 427 dbSNP
rs968490799 433 dbSNP
rs1433777330 436 dbSNP
rs1200997317 443 dbSNP
rs879650934 447 dbSNP
rs1472171342 452 dbSNP
rs755966573 453 dbSNP
rs972018974 459 dbSNP
rs372276645 463 dbSNP
rs375150988 463 dbSNP
rs940563596 472 dbSNP
rs556204268 482 dbSNP
rs1035880398 483 dbSNP
rs987238707 484 dbSNP
rs970129693 491 dbSNP
rs1349136624 493 dbSNP
rs1023854438 505 dbSNP
rs955361018 513 dbSNP
rs1473302501 515 dbSNP
rs1242887435 517 dbSNP
rs148567480 518 dbSNP
rs1488881329 521 dbSNP
rs975443776 529 dbSNP
rs899308480 533 dbSNP
rs560280977 536 dbSNP
rs968198626 545 dbSNP
rs1022849329 558 dbSNP
rs1005084386 560 dbSNP
rs886517935 564 dbSNP
rs1421768056 580 dbSNP
rs879575750 586 dbSNP
rs1368658277 589 dbSNP
rs1459028610 603 dbSNP
rs1166205151 609 dbSNP
rs1369348152 618 dbSNP
rs1052321585 622 dbSNP
rs1259016079 623 dbSNP
rs1394641311 641 dbSNP
rs545458244 649 dbSNP
rs1198088827 654 dbSNP
rs578245567 656 dbSNP
rs1248401472 657 dbSNP
rs1272603462 658 dbSNP
rs957218524 663 dbSNP
rs1253863567 668 dbSNP
rs1035272996 679 dbSNP
rs1270733774 689 dbSNP
rs556922546 690 dbSNP
rs1181034402 693 dbSNP
rs1229986022 700 dbSNP
rs1356699819 704 dbSNP
rs190621466 708 dbSNP
rs1186215325 728 dbSNP
rs1044856243 735 dbSNP
rs1378646570 743 dbSNP
rs1169847707 744 dbSNP
rs914516966 756 dbSNP
rs1464894842 760 dbSNP
rs994560793 761 dbSNP
rs1331666090 768 dbSNP
rs1302667915 773 dbSNP
rs988594772 776 dbSNP
rs1454796802 778 dbSNP
rs1295596165 781 dbSNP
rs751096188 787 dbSNP
rs536440565 794 dbSNP
rs1036643801 797 dbSNP
rs796866369 806 dbSNP
rs969721845 813 dbSNP
rs1023072027 816 dbSNP
rs1256378525 829 dbSNP
rs775615648 832 dbSNP
rs1186354461 838 dbSNP
rs995195611 838 dbSNP
rs963611311 841 dbSNP
rs1016560663 842 dbSNP
rs1162046948 843 dbSNP
rs144488342 848 dbSNP
rs770738677 852 dbSNP
rs886610386 857 dbSNP
rs1238993603 882 dbSNP
rs368953618 882 dbSNP
rs934010387 883 dbSNP
rs921233956 884 dbSNP
rs9253 887 dbSNP
rs900606211 894 dbSNP
rs968063325 895 dbSNP
rs915328969 904 dbSNP
rs1318837218 907 dbSNP
rs988750713 909 dbSNP
rs1436034708 928 dbSNP
rs956883115 929 dbSNP
rs947423340 937 dbSNP
rs186240482 942 dbSNP
rs1289141146 955 dbSNP
rs1325492482 963 dbSNP
rs1003774584 964 dbSNP
rs1206565741 966 dbSNP
rs10489523 968 dbSNP
rs1267147669 968 dbSNP
rs934475634 969 dbSNP
rs553481841 972 dbSNP
rs538281919 973 dbSNP
rs948456702 974 dbSNP
rs1426472811 977 dbSNP
rs774779789 984 dbSNP
rs1370456870 990 dbSNP
rs1294787962 995 dbSNP
rs1457975829 997 dbSNP
rs1062340 1007 dbSNP
rs915692905 1014 dbSNP
rs1348278244 1016 dbSNP
rs1436648348 1018 dbSNP
rs1349808060 1019 dbSNP
rs1347289726 1022 dbSNP
rs973726942 1023 dbSNP
rs1287516282 1028 dbSNP
rs1329531469 1031 dbSNP
rs1225121785 1034 dbSNP
rs1287302413 1038 dbSNP
rs1320657957 1040 dbSNP
rs1221616631 1049 dbSNP
rs1270359414 1052 dbSNP
rs571187996 1054 dbSNP
rs149683702 1060 dbSNP
rs531517737 1064 dbSNP
rs1421886949 1074 dbSNP
rs1470713794 1075 dbSNP
rs1381347145 1076 dbSNP
rs1158200892 1077 dbSNP
rs1411868480 1088 dbSNP
rs1404880378 1092 dbSNP
rs1219485375 1097 dbSNP
rs1417568856 1108 dbSNP
rs1367476717 1113 dbSNP
rs994502024 1115 dbSNP
rs898949235 1118 dbSNP
rs1407937452 1122 dbSNP
rs1307269415 1125 dbSNP
rs7534044 1127 dbSNP
rs1444098355 1130 dbSNP
rs1005145474 1131 dbSNP
rs890269967 1133 dbSNP
rs1355240239 1144 dbSNP
rs1052127573 1145 dbSNP
rs1488219811 1158 dbSNP
rs1339357994 1160 dbSNP
rs775399455 1161 dbSNP
rs931864296 1161 dbSNP
rs1438804923 1165 dbSNP
rs1184387044 1170 dbSNP
rs1268067337 1171 dbSNP
rs1472605396 1180 dbSNP
rs549206961 1185 dbSNP
rs1489126078 1188 dbSNP
rs1167951717 1189 dbSNP
rs1371067852 1190 dbSNP
rs950887019 1191 dbSNP
rs1039721300 1201 dbSNP
rs1339587681 1205 dbSNP
rs997721602 1211 dbSNP
rs1316711549 1216 dbSNP
rs1362472308 1219 dbSNP
rs1226996925 1220 dbSNP
rs900573956 1225 dbSNP
rs1340710004 1226 dbSNP
rs1198030845 1227 dbSNP
rs182088724 1228 dbSNP
rs376753608 1240 dbSNP
rs1442144578 1245 dbSNP
rs12144938 1249 dbSNP
rs1245193277 1252 dbSNP
rs545396560 1252 dbSNP
rs1447772818 1259 dbSNP
rs1187975142 1260 dbSNP
rs1373683057 1264 dbSNP
rs533335622 1284 dbSNP
rs1170686116 1286 dbSNP
rs1401307600 1289 dbSNP
rs1303043519 1294 dbSNP
rs893144940 1297 dbSNP
rs1385964541 1302 dbSNP
rs1052938274 1310 dbSNP
rs12133933 1311 dbSNP
rs907141644 1327 dbSNP
rs1230277130 1328 dbSNP
rs1366353289 1333 dbSNP
rs1273565491 1337 dbSNP
rs935517993 1341 dbSNP
rs1224469481 1342 dbSNP
rs1265281560 1358 dbSNP
rs1463741112 1359 dbSNP
rs114745536 1361 dbSNP
rs574281976 1369 dbSNP
rs1448802505 1374 dbSNP
rs1402398136 1375 dbSNP
rs1376969195 1379 dbSNP
rs982369064 1387 dbSNP
rs1178349790 1393 dbSNP
rs1409439877 1396 dbSNP
rs770912687 1398 dbSNP
rs969589339 1405 dbSNP
rs1456381794 1420 dbSNP
rs948616521 1426 dbSNP
rs1297956475 1435 dbSNP
rs1322186968 1436 dbSNP
rs559412383 1437 dbSNP
rs1406032232 1448 dbSNP
rs973094049 1449 dbSNP
rs1327455867 1452 dbSNP
rs1228080760 1462 dbSNP
rs1261528132 1473 dbSNP
rs963057642 1475 dbSNP
rs1208115924 1478 dbSNP
rs1015104922 1483 dbSNP
rs1266701472 1490 dbSNP
rs1490502375 1492 dbSNP
rs1201411727 1495 dbSNP
rs1249366025 1504 dbSNP
rs892967181 1504 dbSNP
rs1159466451 1508 dbSNP
rs1472133952 1508 dbSNP
rs1177133086 1509 dbSNP
rs1455974119 1511 dbSNP
rs1004606266 1512 dbSNP
rs879215785 1513 dbSNP
rs1241634204 1516 dbSNP
rs1213723473 1517 dbSNP
rs890292035 1518 dbSNP
rs1030080415 1519 dbSNP
rs995961237 1521 dbSNP
rs1478774519 1523 dbSNP
rs1263876003 1527 dbSNP
rs1204294603 1529 dbSNP
rs1484807799 1538 dbSNP
rs1224701782 1539 dbSNP
rs1293059615 1539 dbSNP
rs1337778291 1539 dbSNP
rs1360182059 1539 dbSNP
rs35527783 1539 dbSNP
rs771692554 1539 dbSNP
rs878918469 1539 dbSNP
rs878940127 1539 dbSNP
rs908222933 1539 dbSNP
rs940973893 1539 dbSNP
rs1245745901 1540 dbSNP
rs1491525021 1540 dbSNP
rs1461878900 1541 dbSNP
rs1299130959 1544 dbSNP
rs1257379410 1545 dbSNP
rs1399002919 1555 dbSNP
rs746993658 1559 dbSNP
rs1314615229 1561 dbSNP
rs1383704129 1566 dbSNP
rs951018265 1566 dbSNP
rs1295376734 1572 dbSNP
rs1306865876 1575 dbSNP
rs1205080903 1579 dbSNP
rs1252854871 1580 dbSNP
rs1482147709 1582 dbSNP
rs1199591561 1588 dbSNP
rs372167950 1607 dbSNP
rs976652067 1618 dbSNP
rs1186150509 1625 dbSNP
rs1388970392 1632 dbSNP
rs1219992663 1636 dbSNP
rs1428447786 1636 dbSNP
rs1017608789 1647 dbSNP
rs573270898 1647 dbSNP
rs1464853284 1654 dbSNP
rs1011629188 1656 dbSNP
rs1407081123 1665 dbSNP
rs778587426 1672 dbSNP
rs540467289 1679 dbSNP
rs1361275095 1683 dbSNP
rs1381816599 1684 dbSNP
rs1303576035 1688 dbSNP
rs779522915 1697 dbSNP
rs1042943780 1706 dbSNP
rs572032113 1707 dbSNP
rs946744008 1711 dbSNP
rs1297637547 1714 dbSNP
rs893785318 1715 dbSNP
rs201503779 1716 dbSNP
rs1403937764 1733 dbSNP
rs998896310 1735 dbSNP
rs1222654062 1737 dbSNP
rs1466242633 1737 dbSNP
rs553480793 1738 dbSNP
rs1192450208 1740 dbSNP
rs1246897546 1744 dbSNP
rs1485901024 1749 dbSNP
rs1187683942 1759 dbSNP
rs1045689588 1760 dbSNP
rs1431848420 1778 dbSNP
rs1176185898 1779 dbSNP
rs192418576 1781 dbSNP
rs1471078848 1782 dbSNP
rs928126000 1797 dbSNP
rs529828428 1800 dbSNP
rs1290612899 1812 dbSNP
rs948188195 1819 dbSNP
rs1240935443 1820 dbSNP
rs1199981304 1824 dbSNP
rs577183830 1825 dbSNP
rs1226251390 1828 dbSNP
rs1318073514 1828 dbSNP
rs186038731 1829 dbSNP
rs1317029647 1831 dbSNP
rs1217281342 1832 dbSNP
rs1225885412 1833 dbSNP
rs1323839231 1834 dbSNP
rs779219315 1835 dbSNP
rs1313911449 1836 dbSNP
rs1199237087 1838 dbSNP
rs1270064116 1841 dbSNP
rs1452429645 1845 dbSNP
rs879563145 1849 dbSNP
rs1333694257 1850 dbSNP
rs963386393 1862 dbSNP
rs537746680 1863 dbSNP
rs1348133883 1864 dbSNP
rs983606665 1866 dbSNP
rs1303676891 1869 dbSNP
rs941109938 1877 dbSNP
rs954521912 1878 dbSNP
rs1407733718 1883 dbSNP
rs1030031533 1885 dbSNP
rs1278639366 1887 dbSNP
rs908317592 1889 dbSNP
rs1047160669 1895 dbSNP
rs1287135155 1896 dbSNP
rs1460429103 1901 dbSNP
rs1222471808 1904 dbSNP
rs1293105312 1913 dbSNP
rs995997187 1914 dbSNP
rs900326989 1917 dbSNP
rs1165181226 1920 dbSNP
rs976368076 1921 dbSNP
rs1021516847 1922 dbSNP
rs964819823 1924 dbSNP
rs1382992972 1928 dbSNP
rs755403823 1929 dbSNP
rs1457769431 1930 dbSNP
rs1427685123 1931 dbSNP
rs567591235 1935 dbSNP
rs1052407742 1937 dbSNP
rs1354830221 1942 dbSNP
rs796480419 1943 dbSNP
rs990301005 1945 dbSNP
rs1194534795 1946 dbSNP
rs906644319 1949 dbSNP
rs957439172 1953 dbSNP
rs1316476222 1964 dbSNP
rs754332929 1970 dbSNP
rs1245692895 1984 dbSNP
rs1272760608 1985 dbSNP
rs1438740259 2007 dbSNP
rs1206972627 2018 dbSNP
rs181494352 2024 dbSNP
rs534017942 2031 dbSNP
rs1387122430 2032 dbSNP
rs971426402 2034 dbSNP
rs1024610818 2038 dbSNP
rs916720755 2039 dbSNP
rs1241152026 2040 dbSNP
rs1037963946 2042 dbSNP
rs1326915284 2043 dbSNP
rs942256223 2048 dbSNP
rs75481897 2052 dbSNP
rs566569516 2060 dbSNP
rs1038193868 2063 dbSNP
rs1216667603 2064 dbSNP
rs1261605389 2065 dbSNP
rs200632365 2065 dbSNP
rs908114965 2065 dbSNP
rs1392793685 2067 dbSNP
rs1303751099 2069 dbSNP
rs189160070 2076 dbSNP
rs1383162886 2079 dbSNP
rs1476325023 2079 dbSNP
rs1174037667 2083 dbSNP
rs954515972 2092 dbSNP
rs1046812239 2096 dbSNP
rs1178126948 2097 dbSNP
rs1382230010 2105 dbSNP
rs1381133548 2108 dbSNP
rs933615911 2111 dbSNP
rs922305117 2112 dbSNP
rs780369801 2114 dbSNP
rs1433454811 2116 dbSNP
rs1041003257 2122 dbSNP
rs547717923 2123 dbSNP
rs1265225834 2124 dbSNP
rs1348679009 2142 dbSNP
rs1204656891 2146 dbSNP
rs1285000555 2147 dbSNP
rs1448670121 2150 dbSNP
rs1197123402 2155 dbSNP
rs1267988370 2156 dbSNP
rs1179008453 2164 dbSNP
rs1434465158 2165 dbSNP
rs1268649150 2166 dbSNP
rs1222416061 2167 dbSNP
rs1361682491 2167 dbSNP
rs1452540564 2170 dbSNP
rs533472682 2179 dbSNP
rs943604797 2180 dbSNP
rs1422071586 2181 dbSNP
rs1168160086 2184 dbSNP
rs1285533828 2184 dbSNP
rs1301818601 2184 dbSNP
rs1345347649 2184 dbSNP
rs1405897307 2184 dbSNP
rs1352920184 2185 dbSNP
rs910833177 2186 dbSNP
rs1489941922 2187 dbSNP
rs1224472147 2188 dbSNP
rs990270108 2188 dbSNP
rs1288637381 2191 dbSNP
rs1418153873 2196 dbSNP
rs113905307 2198 dbSNP
rs1182011439 2200 dbSNP
rs923049816 2207 dbSNP
rs974442131 2208 dbSNP
rs1350194262 2212 dbSNP
rs1278072981 2213 dbSNP
rs1235501256 2218 dbSNP
rs964529148 2219 dbSNP
rs1394718328 2223 dbSNP
rs1391100989 2256 dbSNP
rs977542057 2257 dbSNP
rs1379263345 2266 dbSNP
rs1021380947 2267 dbSNP
rs765486176 2285 dbSNP
rs1314408517 2291 dbSNP
rs1404291282 2300 dbSNP
rs1247995210 2322 dbSNP
rs6700586 2324 dbSNP
rs956022358 2329 dbSNP
rs1024329184 2333 dbSNP
rs1401113424 2334 dbSNP
rs1196327334 2342 dbSNP
rs150118113 2356 dbSNP
rs140402807 2357 dbSNP
rs1031992980 2359 dbSNP
rs999556693 2361 dbSNP
rs1156502677 2363 dbSNP
rs1385243690 2365 dbSNP
rs544196095 2365 dbSNP
rs1467076314 2367 dbSNP
rs1461770554 2368 dbSNP
rs1377698564 2370 dbSNP
rs1402761075 2372 dbSNP
rs906508358 2372 dbSNP
rs1336164892 2373 dbSNP
rs1383542475 2376 dbSNP
rs958601072 2379 dbSNP
rs1293341753 2381 dbSNP
rs1306743642 2390 dbSNP
rs551043797 2393 dbSNP
rs1005347898 2394 dbSNP
rs1025784861 2403 dbSNP
rs1184154537 2403 dbSNP
rs1243286722 2403 dbSNP
rs1487756976 2403 dbSNP
rs150718372 2403 dbSNP
rs57369458 2403 dbSNP
rs886953165 2403 dbSNP
rs763704851 2404 dbSNP
rs1175958823 2405 dbSNP
rs1266029881 2415 dbSNP
rs183992173 2423 dbSNP
rs562442167 2424 dbSNP
rs1287091720 2429 dbSNP
rs765708944 2431 dbSNP
rs373813468 2437 dbSNP
rs1282356122 2439 dbSNP
rs540449287 2440 dbSNP
rs762659825 2441 dbSNP
rs1039357982 2442 dbSNP
rs1222599172 2443 dbSNP
rs942404032 2457 dbSNP
rs1313492118 2461 dbSNP
rs575583535 2463 dbSNP
rs1343529872 2464 dbSNP
rs1054638537 2466 dbSNP
rs1485828595 2467 dbSNP
rs1048430395 2468 dbSNP
rs564356699 2473 dbSNP
rs1431180391 2480 dbSNP
rs1325652121 2481 dbSNP
rs1430213642 2484 dbSNP
rs181412934 2485 dbSNP
rs765108648 2492 dbSNP
rs764237966 2504 dbSNP
rs12759356 2506 dbSNP
rs1454302161 2520 dbSNP
rs1299961080 2522 dbSNP
rs1343456406 2528 dbSNP
rs776570485 2531 dbSNP
rs974473282 2532 dbSNP
rs917352476 2533 dbSNP
rs964391432 2550 dbSNP
rs544982471 2551 dbSNP
rs914321098 2555 dbSNP
rs1218071882 2559 dbSNP
rs1467838667 2560 dbSNP
rs990033695 2572 dbSNP
rs958696041 2575 dbSNP
rs956047866 2578 dbSNP
rs1169016185 2585 dbSNP
rs561981630 2588 dbSNP
rs1479138305 2597 dbSNP
rs1031605989 2611 dbSNP
rs1175692326 2619 dbSNP
rs1016825793 2624 dbSNP
rs1419720497 2633 dbSNP
rs1189820266 2637 dbSNP
rs555729661 2647 dbSNP
rs1003174203 2654 dbSNP
rs1201846886 2655 dbSNP
rs1303540964 2658 dbSNP
rs1351343228 2677 dbSNP
rs1439643444 2681 dbSNP
rs573018842 2684 dbSNP
rs1025457105 2701 dbSNP
rs1241650583 2705 dbSNP
rs970724733 2708 dbSNP
rs1312216047 2711 dbSNP
rs1357964426 2712 dbSNP
rs998455350 2719 dbSNP
rs1453683422 2720 dbSNP
rs900912184 2721 dbSNP
rs1232501560 2722 dbSNP
rs1458347574 2724 dbSNP
rs1018018494 2730 dbSNP
rs1259846671 2730 dbSNP
rs1024939262 2737 dbSNP
rs1164116519 2742 dbSNP
rs770733974 2748 dbSNP
rs1012250066 2749 dbSNP
rs1169362169 2757 dbSNP
rs189141246 2769 dbSNP
rs1038176656 2776 dbSNP
rs1334125049 2777 dbSNP
rs1381389870 2780 dbSNP
rs1006414279 2784 dbSNP
rs1452637860 2792 dbSNP
rs886585746 2796 dbSNP
rs1268218282 2797 dbSNP
rs1450009740 2800 dbSNP
rs1047989944 2803 dbSNP
rs772148828 2807 dbSNP
rs1383069738 2813 dbSNP
rs1200697541 2825 dbSNP
rs1241421220 2829 dbSNP
rs933541498 2831 dbSNP
rs1188210504 2837 dbSNP
rs1335746694 2862 dbSNP
rs901520992 2863 dbSNP
rs573831772 2871 dbSNP
rs555605549 2874 dbSNP
rs1401853494 2876 dbSNP
rs1423985623 2877 dbSNP
rs533856162 2879 dbSNP
rs536882501 2889 dbSNP
rs950300895 2897 dbSNP
rs917299037 2902 dbSNP
rs1335563984 2903 dbSNP
rs991576542 2906 dbSNP
rs937294647 2909 dbSNP
rs1038716086 2910 dbSNP
rs943030690 2915 dbSNP
rs914350939 2918 dbSNP
rs759812029 2929 dbSNP
rs772937049 2933 dbSNP
rs951316047 2934 dbSNP
rs1445688378 2935 dbSNP
rs566628703 2936 dbSNP
rs1384829886 2944 dbSNP
rs775794381 2962 dbSNP
rs551607507 2965 dbSNP
rs918532712 2980 dbSNP
rs1445213546 2984 dbSNP
rs147128607 2987 dbSNP
rs1263721820 3000 dbSNP
rs981382821 3003 dbSNP
rs965590878 3016 dbSNP
rs541779088 3018 dbSNP
rs1233551994 3019 dbSNP
rs184678152 3022 dbSNP
rs193066769 3023 dbSNP
rs748043994 3024 dbSNP
rs1229812423 3026 dbSNP
rs1382072925 3027 dbSNP
rs957679941 3031 dbSNP
rs561961358 3032 dbSNP
rs1359908743 3034 dbSNP
rs1313841041 3037 dbSNP
rs773144431 3060 dbSNP
rs1402208725 3062 dbSNP
rs959343693 3065 dbSNP
rs1234150309 3067 dbSNP
rs1031951625 3069 dbSNP
rs1348611060 3069 dbSNP
rs57027729 3073 dbSNP
rs999629873 3073 dbSNP
rs781153323 3075 dbSNP
rs1489203010 3080 dbSNP
rs1042361542 3081 dbSNP
rs1014388030 3082 dbSNP
rs1433428524 3090 dbSNP
rs1353264712 3091 dbSNP
rs143430408 3093 dbSNP
rs12118749 3094 dbSNP
rs1365344411 3097 dbSNP
rs1161857402 3112 dbSNP
rs1381495345 3113 dbSNP
rs188910451 3116 dbSNP
rs571566398 3119 dbSNP
rs902137949 3140 dbSNP
rs1048417675 3141 dbSNP
rs930007041 3149 dbSNP
rs1334108549 3150 dbSNP
rs577303611 3156 dbSNP
rs1355778892 3157 dbSNP
rs1039249251 3159 dbSNP
rs968699303 3159 dbSNP
rs376302658 3160 dbSNP
rs943056716 3166 dbSNP
rs1290789977 3167 dbSNP
rs562271449 3169 dbSNP
rs757928506 3179 dbSNP
rs543992930 3180 dbSNP
rs1307347254 3185 dbSNP
rs934365746 3186 dbSNP
rs957771845 3197 dbSNP
rs1032088188 3199 dbSNP
rs1165315891 3199 dbSNP
rs750146563 3200 dbSNP
rs573544593 3201 dbSNP
rs949849637 3202 dbSNP
rs1332147138 3220 dbSNP
rs1379195074 3222 dbSNP
rs1450449162 3230 dbSNP
rs1311884090 3231 dbSNP
rs1338348428 3231 dbSNP
rs35026214 3231 dbSNP
rs374556798 3231 dbSNP
rs555243887 3231 dbSNP
rs1198821088 3232 dbSNP
rs1277050078 3237 dbSNP
rs1406124902 3238 dbSNP
rs966784676 3243 dbSNP
rs1182344548 3245 dbSNP
rs372820373 3246 dbSNP
rs915851765 3247 dbSNP
rs147444087 3249 dbSNP
rs959417360 3257 dbSNP
rs1016646487 3258 dbSNP
rs984898192 3259 dbSNP
rs184768988 3260 dbSNP
rs1001736787 3261 dbSNP
rs1026392400 3270 dbSNP
rs1346003505 3271 dbSNP
rs997669490 3274 dbSNP
rs551401474 3280 dbSNP
rs1379841543 3288 dbSNP
rs1397637559 3291 dbSNP
rs573224216 3298 dbSNP
rs1293193180 3306 dbSNP
rs1339580852 3306 dbSNP
rs1048959989 3312 dbSNP
rs1398958339 3315 dbSNP
rs1427396126 3316 dbSNP
rs1427970310 3320 dbSNP
rs1201439682 3321 dbSNP
rs1480710933 3323 dbSNP
rs377181065 3327 dbSNP
rs557975834 3329 dbSNP
rs902002104 3334 dbSNP
rs1017825120 3335 dbSNP
rs1194719956 3346 dbSNP
rs539682673 3350 dbSNP
rs191879454 3351 dbSNP
rs1040945467 3352 dbSNP
rs187403136 3362 dbSNP
rs1287042392 3363 dbSNP
rs998523097 3367 dbSNP
rs1400409102 3384 dbSNP
rs902958227 3388 dbSNP
rs1045487530 3396 dbSNP
rs949884283 3400 dbSNP
rs915720662 3405 dbSNP
rs566192899 3413 dbSNP
rs1264479857 3417 dbSNP
rs1218218293 3431 dbSNP
rs1301433956 3434 dbSNP
rs535592384 3451 dbSNP
rs1367373007 3452 dbSNP
rs1212912580 3453 dbSNP
rs1345397099 3462 dbSNP
rs757738078 3463 dbSNP
rs372488147 3467 dbSNP
rs941238261 3471 dbSNP
rs1217845884 3476 dbSNP
rs909798227 3478 dbSNP
rs936550341 3483 dbSNP
rs1282002469 3486 dbSNP
rs568403920 3487 dbSNP
rs1363101544 3502 dbSNP
rs985230797 3503 dbSNP
rs966385845 3509 dbSNP
rs950734964 3510 dbSNP
rs1156895893 3522 dbSNP
rs919366736 3529 dbSNP
rs1299821559 3530 dbSNP
rs976109122 3531 dbSNP
rs960245732 3537 dbSNP
rs77163536 3539 dbSNP
rs1017687478 3540 dbSNP
rs1221601914 3543 dbSNP
rs1469416523 3544 dbSNP
rs1428503766 3546 dbSNP
rs1174198995 3548 dbSNP
rs1430010261 3550 dbSNP
rs1241430257 3566 dbSNP
rs1288669374 3570 dbSNP
rs754375463 3572 dbSNP
rs1320288537 3581 dbSNP
rs528750054 3582 dbSNP
rs1221161257 3585 dbSNP
rs114002181 3586 dbSNP
rs1033249489 3596 dbSNP
rs1237583782 3600 dbSNP
rs1484673934 3601 dbSNP
rs1160381676 3603 dbSNP
rs552331098 3614 dbSNP
rs1244634540 3625 dbSNP
rs888651444 3627 dbSNP
rs1404528888 3633 dbSNP
rs1165159959 3640 dbSNP
rs182494397 3644 dbSNP
rs761279627 3649 dbSNP
rs1330104125 3650 dbSNP
rs1376971347 3660 dbSNP
rs369319189 3662 dbSNP
rs1261747169 3663 dbSNP
rs116429315 3664 dbSNP
rs1228131006 3679 dbSNP
rs1290956389 3682 dbSNP
rs1323748249 3684 dbSNP
rs1196970323 3686 dbSNP
rs1257582144 3690 dbSNP
rs193004882 3696 dbSNP
rs1180489093 3699 dbSNP
rs897254997 3702 dbSNP
rs1213221101 3707 dbSNP
rs187527814 3710 dbSNP
rs375352659 3713 dbSNP
rs1415617773 3722 dbSNP
rs1407913157 3727 dbSNP
rs1451930580 3731 dbSNP
rs767652634 3739 dbSNP
rs1400441863 3742 dbSNP
rs1466712422 3743 dbSNP
rs182990825 3745 dbSNP
rs1339233274 3746 dbSNP
rs1447871431 3753 dbSNP
rs1055677363 3754 dbSNP
rs573161299 3759 dbSNP
rs1381792237 3760 dbSNP
rs889659161 3764 dbSNP
rs190842275 3766 dbSNP
rs1318815218 3767 dbSNP
rs936497950 3768 dbSNP
rs1276505774 3778 dbSNP
rs112547169 3780 dbSNP
rs546141432 3780 dbSNP
rs575476033 3784 dbSNP
rs556888268 3786 dbSNP
rs1046958514 3790 dbSNP
rs929317471 3793 dbSNP
rs1476699806 3794 dbSNP
rs774594098 3802 dbSNP
rs186350630 3810 dbSNP
rs976140346 3812 dbSNP
rs1170311993 3813 dbSNP
rs1400853900 3817 dbSNP
rs1414470061 3824 dbSNP
rs966138098 3827 dbSNP
rs141249302 3831 dbSNP
rs986730303 3832 dbSNP
rs41439344 3834 dbSNP
rs980378816 3840 dbSNP
rs1033697075 3842 dbSNP
rs999089470 3849 dbSNP
rs1344390593 3855 dbSNP
rs1219777506 3870 dbSNP
rs148237073 3875 dbSNP
rs967045665 3881 dbSNP
rs1027542888 3887 dbSNP
rs1023941157 3888 dbSNP
rs1481228513 3894 dbSNP
rs1489100754 3894 dbSNP
rs1251308633 3896 dbSNP
rs1202853143 3898 dbSNP
rs570533007 3901 dbSNP
rs1478058976 3913 dbSNP
rs183384739 3915 dbSNP
rs1034087843 3921 dbSNP
rs1019696684 3931 dbSNP
rs1297984439 3938 dbSNP
rs1005822774 3939 dbSNP
rs1321790480 3944 dbSNP
rs4304543 3947 dbSNP
rs1330647276 3962 dbSNP
rs1049616013 3963 dbSNP
rs1276649954 3970 dbSNP
rs1380611733 3972 dbSNP
rs1000715630 3973 dbSNP
rs1239322306 3977 dbSNP
rs752266226 3986 dbSNP
rs531116960 3996 dbSNP
rs1397114849 3997 dbSNP
rs1047429611 3998 dbSNP
rs1207751226 4000 dbSNP
rs929870104 4009 dbSNP
rs570183054 4015 dbSNP
rs548543767 4022 dbSNP
rs945232747 4034 dbSNP
rs373892103 4041 dbSNP
rs1040385796 4044 dbSNP
rs1367250894 4048 dbSNP
rs1438445644 4049 dbSNP
rs1017473039 4050 dbSNP
rs1381359997 4054 dbSNP
rs528975892 4058 dbSNP
rs1455648240 4061 dbSNP
rs1431867495 4066 dbSNP
rs1161773070 4067 dbSNP
rs944693678 4071 dbSNP
rs530837899 4075 dbSNP
rs764914440 4083 dbSNP
rs910657986 4090 dbSNP
rs1374756847 4093 dbSNP
rs1446004995 4095 dbSNP
rs561668152 4096 dbSNP
rs1443613278 4102 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' accCUGAGGUACGGGGUuc 5'
             |:| ||| ||::||  
Target 5' gcuGGCACCA-GCUUCAuc 3'
7 - 24
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000373075.2 | 3UTR | aaacuggcuggcaccagcuucaucugugaUACCCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
66 hsa-miR-4260 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074404 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT289774 PER1 period circadian clock 1 2 2
MIRT442576 HOXD9 homeobox D9 2 2
MIRT443878 CNKSR3 CNKSR family member 3 2 2
MIRT449080 XPO6 exportin 6 2 2
MIRT450294 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT461785 FXR2 FMR1 autosomal homolog 2 2 2
MIRT463931 WNT10B Wnt family member 10B 2 2
MIRT464860 UBB ubiquitin B 2 8
MIRT467619 SLC7A5 solute carrier family 7 member 5 2 2
MIRT469649 RAC1 Rac family small GTPase 1 2 2
MIRT473421 MDM4 MDM4, p53 regulator 2 2
MIRT473646 MARCKSL1 MARCKS like 1 2 2
MIRT474213 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT474335 KMT2D lysine methyltransferase 2D 2 2
MIRT474871 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT477440 ELOVL5 ELOVL fatty acid elongase 5 2 2
MIRT478432 DAZAP2 DAZ associated protein 2 2 2
MIRT479851 CCDC6 coiled-coil domain containing 6 2 2
MIRT482507 ACTB actin beta 2 2
MIRT485473 IGF1R insulin like growth factor 1 receptor 2 8
MIRT485670 CCDC64 BICD family like cargo adaptor 1 2 4
MIRT485902 PGPEP1 pyroglutamyl-peptidase I 2 4
MIRT488143 PRRC2B proline rich coiled-coil 2B 2 4
MIRT489455 MSC musculin 2 2
MIRT509568 HIST2H2AB histone cluster 2 H2A family member b 2 4
MIRT513093 DYNAP dynactin associated protein 2 2
MIRT513256 CALM3 calmodulin 3 2 2
MIRT514356 UBBP4 ubiquitin B pseudogene 4 2 6
MIRT522019 PAQR3 progestin and adipoQ receptor family member 3 2 4
MIRT523164 HIST3H3 histone cluster 3 H3 2 2
MIRT523297 HIST1H1B histone cluster 1 H1 family member b 2 2
MIRT524782 BAG5 BCL2 associated athanogene 5 2 2
MIRT530921 SCIN scinderin 2 2
MIRT533302 USP44 ubiquitin specific peptidase 44 2 2
MIRT552782 YIPF4 Yip1 domain family member 4 2 4
MIRT553981 SRPR SRP receptor alpha subunit 2 2
MIRT563126 ZNF215 zinc finger protein 215 2 2
MIRT569025 IL21R interleukin 21 receptor 2 2
MIRT573413 RPL18A ribosomal protein L18a 2 2
MIRT574877 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 3
MIRT607538 GLI2 GLI family zinc finger 2 2 2
MIRT607682 MAPK10 mitogen-activated protein kinase 10 2 3
MIRT623791 GK5 glycerol kinase 5 (putative) 2 2
MIRT628834 FAM151B family with sequence similarity 151 member B 2 2
MIRT635547 LEPREL1 prolyl 3-hydroxylase 2 2 2
MIRT635698 NMNAT2 nicotinamide nucleotide adenylyltransferase 2 2 2
MIRT635906 ARPC1B actin related protein 2/3 complex subunit 1B 2 2
MIRT649985 MSI1 musashi RNA binding protein 1 2 2
MIRT654900 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 2 2
MIRT655116 PHF7 PHD finger protein 7 2 2
MIRT658958 DNAJC6 DnaJ heat shock protein family (Hsp40) member C6 2 3
MIRT659665 CDC42EP4 CDC42 effector protein 4 2 2
MIRT668946 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT691164 APOL6 apolipoprotein L6 2 2
MIRT692696 MEAF6 MYST/Esa1 associated factor 6 2 2
MIRT693245 HBS1L HBS1 like translational GTPase 2 2
MIRT695203 SCAMP3 secretory carrier membrane protein 3 2 2
MIRT701957 MINK1 misshapen like kinase 1 2 2
MIRT706802 APOL4 apolipoprotein L4 2 2
MIRT716899 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT717632 HLX H2.0 like homeobox 2 2
MIRT719052 ZNF281 zinc finger protein 281 2 2
MIRT722973 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT723643 RPTN repetin 2 2
MIRT734708 NR3C2 nuclear receptor subfamily 3 group C member 2 4 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4260 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4260 Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4260 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-4260 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4260 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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