pre-miRNA Information
pre-miRNA hsa-mir-4433a   
Genomic Coordinates chr2: 64340759 - 64340839
Description Homo sapiens miR-4433a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4433a-3p
Sequence 51| ACAGGAGUGGGGGUGGGACAU |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751480515 9 dbSNP
rs557760377 15 dbSNP
rs1479580865 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SCNM1   
Synonyms -
Description sodium channel modifier 1
Transcript NM_024041   
Expression
Putative miRNA Targets on SCNM1
3'UTR of SCNM1
(miRNA target sites are highlighted)
>SCNM1|NM_024041|3'UTR
   1 TACCCTTTTCCCATTCATTCACAAATAAATTACAATGGGTGCTGAGAACTTAACTTTCCTTAAGTCTGGTTCCTTGTTGG
  81 ATCTCAGGATTTCAGATCTGTTCATTCTCATTCCAACTACTCCTTGCCTGCAAGGTACACAGCTCTCCACACTCCTTTTT
 161 TTTTTTTTTTTTTTTTTGAGGCAGAGTCTCGCTCTATCGCCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAA
 241 GCTCTGCCTCCCAGGTTCACGCCTTTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCC
 321 AGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATC
 401 CGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCCAGCCACGGCTATCCATACTTCTAACC
 481 CCTCCCCCACCTCCTACCAAAGCCATGCCAAGCGTCAGCTGCATCAGCCTGGTGCCCTATTAATAAGACTGTCAAAAAGA
 561 GGTCTTTGCCCTTCATGTTGTCTGCCTGCTTCTCCACTACCACTCAAAGTCCTTTCCCCCTTCAAATCACATAAGGACTG
 641 CAGGTAGGCACTAGGGGGACCTGGCCACATCTGGAAACAGGGCTGTGGCTAAGTTCCCTGTGAAAGTAGAAGAGTCAAAA
 721 GGCATTGGCAGGGTTATGGGGAACACCAAGGGAGGGAACACCCCCACCTCCTCCTAGTAACCTGAACCTCCCTGCCTGCT
 801 GATCCCCAGAGTATAAATAATCCCCTGGTGAACTGGCAGTAACCCTTGGGGGTTAGCGCCAAGATTCTCACCCCAAAGCC
 881 CAAGGAAGGAGGCAGGCAAAATGGATAGAAGGGCTTTTATTTACAGGAAAGGAGGACAGATGAGGATTTAAGTGTCCAGT
 961 GCTCCCAGCGCTAGTTGGTAAAGGGAAATGCAGTGTTATCTCTTCTTTTGCTGGCGACCTGTAAAGGAGCAATATTAAAC
1041 ATAAGTGTTTGTTCCAGCTCCTGCTTTCTGCAAAGGCACTCTTCTCCTTTCCAGTCCCTTAGCCAAACTCATAAATTGGT
1121 AGTGTCTTAGGCCACCTTACAGGCCCATCCCACATTAACAAAACAAAACAAGAAACCACACCACAAATAAAATTACGATA
1201 CCTCTAAACAAG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uacAGGGUGGG---GGUGAGGAca 5'
             ||:||::|   |:||||||  
Target 5' catTCTCATTCCAACTACTCCTtg 3'
103 - 126 142.00 -18.90
2
miRNA  3' uaCA-GGGUGGGGGUGAGGACa 5'
            || ::::::|| :|||||| 
Target 5' aaGTGTTTGTTCCAGCTCCTGc 3'
1043 - 1064 139.00 -18.60
3
miRNA  3' uacagGGUGGGGGUGAGGAca 5'
               |: :|| |||||||  
Target 5' cacagCTCTCCACACTCCTtt 3'
138 - 158 136.00 -16.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30134830 18 COSMIC
COSN30490457 38 COSMIC
COSN30635069 44 COSMIC
COSN31524895 47 COSMIC
COSN28880766 170 COSMIC
COSN21301487 294 COSMIC
COSN21669100 324 COSMIC
COSN15040585 732 COSMIC
COSN30599221 860 COSMIC
COSN30692217 933 COSMIC
COSN32053049 958 COSMIC
COSN9363188 970 COSMIC
COSN31587178 971 COSMIC
COSN28192743 979 COSMIC
COSN30148801 986 COSMIC
COSM1229777 1016 COSMIC
COSN1405942 1040 COSMIC
COSN22260518 1198 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs779426695 2 dbSNP
rs1412610092 4 dbSNP
rs746587826 5 dbSNP
rs1355897705 6 dbSNP
rs768173110 8 dbSNP
rs1298436229 13 dbSNP
rs1277728104 14 dbSNP
rs189077565 17 dbSNP
rs1225535600 18 dbSNP
rs769115844 20 dbSNP
rs1441658215 22 dbSNP
rs1397730242 23 dbSNP
rs748475025 25 dbSNP
rs770171448 36 dbSNP
rs1259995256 39 dbSNP
rs773655167 40 dbSNP
rs763442386 41 dbSNP
rs766963990 46 dbSNP
rs1471482282 52 dbSNP
rs1243414883 54 dbSNP
rs963728254 62 dbSNP
rs1291089476 67 dbSNP
rs587660034 74 dbSNP
rs933190732 80 dbSNP
rs773166828 82 dbSNP
rs1050212815 88 dbSNP
rs1398144549 100 dbSNP
rs1383455245 101 dbSNP
rs1030279230 109 dbSNP
rs1293693148 111 dbSNP
rs181495889 117 dbSNP
rs369906216 123 dbSNP
rs947309901 125 dbSNP
rs1414217413 128 dbSNP
rs1042930840 129 dbSNP
rs148007771 131 dbSNP
rs1237144125 132 dbSNP
rs1369262641 135 dbSNP
rs1189426296 137 dbSNP
rs201786885 137 dbSNP
rs1445005639 144 dbSNP
rs1247344473 146 dbSNP
rs1479443690 152 dbSNP
rs1178477067 153 dbSNP
rs1270778384 155 dbSNP
rs1247448150 156 dbSNP
rs1285529484 156 dbSNP
rs1324040438 156 dbSNP
rs1363417671 156 dbSNP
rs1436522529 156 dbSNP
rs1490479931 156 dbSNP
rs5777765 156 dbSNP
rs757005132 156 dbSNP
rs988821038 156 dbSNP
rs998853669 156 dbSNP
rs1408070770 157 dbSNP
rs1423235185 158 dbSNP
rs1036207009 160 dbSNP
rs1204391166 163 dbSNP
rs1162634085 164 dbSNP
rs895897366 176 dbSNP
rs946710457 177 dbSNP
rs1461734913 178 dbSNP
rs1170264290 179 dbSNP
rs1353026068 180 dbSNP
rs1444596220 181 dbSNP
rs147552719 187 dbSNP
rs1298884839 189 dbSNP
rs1451613195 190 dbSNP
rs1013124574 191 dbSNP
rs1023145105 192 dbSNP
rs926696777 193 dbSNP
rs952815596 197 dbSNP
rs587699415 199 dbSNP
rs1015816212 200 dbSNP
rs1435858482 204 dbSNP
rs962040395 222 dbSNP
rs1331716847 223 dbSNP
rs971755607 224 dbSNP
rs923048904 229 dbSNP
rs954470806 230 dbSNP
rs587605900 241 dbSNP
rs1431340938 251 dbSNP
rs910404387 252 dbSNP
rs1190511714 261 dbSNP
rs1232968504 262 dbSNP
rs947193695 265 dbSNP
rs1179003980 270 dbSNP
rs1042983178 272 dbSNP
rs924533033 280 dbSNP
rs1482607506 285 dbSNP
rs1206335717 291 dbSNP
rs1277162028 296 dbSNP
rs1219108134 300 dbSNP
rs1368891161 301 dbSNP
rs934696123 305 dbSNP
rs1259468150 306 dbSNP
rs1057123636 307 dbSNP
rs780701964 309 dbSNP
rs1013007079 310 dbSNP
rs587638649 315 dbSNP
rs888627115 324 dbSNP
rs1357162269 336 dbSNP
rs1005708847 340 dbSNP
rs149028000 346 dbSNP
rs1175060339 348 dbSNP
rs1415007829 349 dbSNP
rs1016301382 350 dbSNP
rs1156386429 351 dbSNP
rs929814499 352 dbSNP
rs961643030 360 dbSNP
rs4246524 361 dbSNP
rs1484255149 362 dbSNP
rs1047436141 366 dbSNP
rs1399931246 374 dbSNP
rs1313366264 379 dbSNP
rs1281332834 381 dbSNP
rs1268850906 382 dbSNP
rs888340421 393 dbSNP
rs1030001953 396 dbSNP
rs1230515512 398 dbSNP
rs587611377 402 dbSNP
rs587669239 403 dbSNP
rs1448461058 404 dbSNP
rs1273221520 405 dbSNP
rs910289787 407 dbSNP
rs968545523 411 dbSNP
rs185744140 412 dbSNP
rs1160716192 413 dbSNP
rs899502695 417 dbSNP
rs1412618639 418 dbSNP
rs370458417 427 dbSNP
rs998384857 438 dbSNP
rs1239753295 439 dbSNP
rs934602914 440 dbSNP
rs1057397237 441 dbSNP
rs917273530 449 dbSNP
rs948670025 450 dbSNP
rs745427618 451 dbSNP
rs751543930 452 dbSNP
rs1187357292 456 dbSNP
rs1424662132 461 dbSNP
rs587598014 462 dbSNP
rs1175682694 465 dbSNP
rs1037211416 478 dbSNP
rs1389253295 480 dbSNP
rs897278191 489 dbSNP
rs72708455 510 dbSNP
rs1348957422 513 dbSNP
rs587730074 514 dbSNP
rs968248632 515 dbSNP
rs1387525438 539 dbSNP
rs1187030368 545 dbSNP
rs980776225 550 dbSNP
rs1249171945 554 dbSNP
rs1206983205 563 dbSNP
rs1347350261 565 dbSNP
rs587647864 576 dbSNP
rs1487506267 577 dbSNP
rs1030300339 579 dbSNP
rs1265119924 581 dbSNP
rs1222526635 582 dbSNP
rs767850843 595 dbSNP
rs1323711048 610 dbSNP
rs926644207 614 dbSNP
rs1227390466 615 dbSNP
rs145965816 618 dbSNP
rs1299656863 619 dbSNP
rs1384574061 620 dbSNP
rs1007162551 632 dbSNP
rs1293579943 633 dbSNP
rs116727118 635 dbSNP
rs587764318 641 dbSNP
rs41299609 643 dbSNP
rs1429443952 649 dbSNP
rs1391327757 650 dbSNP
rs587687343 652 dbSNP
rs1305066540 658 dbSNP
rs190271351 659 dbSNP
rs1046854862 660 dbSNP
rs1191816378 668 dbSNP
rs587646647 696 dbSNP
rs1031506096 698 dbSNP
rs1490921802 705 dbSNP
rs909813877 707 dbSNP
rs769158699 709 dbSNP
rs72994035 716 dbSNP
rs1342527791 717 dbSNP
rs1276715871 726 dbSNP
rs1425803399 733 dbSNP
rs1231040545 734 dbSNP
rs1311501652 736 dbSNP
rs1301439412 745 dbSNP
rs1348253399 752 dbSNP
rs1306951448 757 dbSNP
rs1282013048 762 dbSNP
rs1409630612 766 dbSNP
rs1039595808 769 dbSNP
rs1448541166 771 dbSNP
rs1371509142 774 dbSNP
rs1216290484 778 dbSNP
rs899533669 790 dbSNP
rs956042661 795 dbSNP
rs1176954010 796 dbSNP
rs1481426905 798 dbSNP
rs1467356897 800 dbSNP
rs766365254 807 dbSNP
rs1195673625 809 dbSNP
rs1249895636 812 dbSNP
rs1395774634 817 dbSNP
rs1439123498 826 dbSNP
rs1483491737 844 dbSNP
rs752745673 858 dbSNP
rs892188749 859 dbSNP
rs1482917359 860 dbSNP
rs1256453622 864 dbSNP
rs992770315 869 dbSNP
rs1224819489 870 dbSNP
rs1326409957 876 dbSNP
rs780382011 882 dbSNP
rs587682337 884 dbSNP
rs1401763552 890 dbSNP
rs1228685539 898 dbSNP
rs948721745 900 dbSNP
rs1351919549 906 dbSNP
rs1022437766 914 dbSNP
rs980093037 918 dbSNP
rs774271174 925 dbSNP
rs777175423 929 dbSNP
rs749822284 940 dbSNP
rs767593974 941 dbSNP
rs1432447027 943 dbSNP
rs1175161718 950 dbSNP
rs909852338 952 dbSNP
rs199830731 961 dbSNP
rs1380306538 963 dbSNP
rs28730720 970 dbSNP
rs762298616 970 dbSNP
rs1311146496 971 dbSNP
rs765127214 975 dbSNP
rs1033912257 976 dbSNP
rs376422564 980 dbSNP
rs780090251 984 dbSNP
rs587612885 991 dbSNP
rs766079291 994 dbSNP
rs371161010 996 dbSNP
rs754550049 999 dbSNP
rs374246114 1000 dbSNP
rs748375930 1001 dbSNP
rs747816307 1002 dbSNP
rs1217351894 1003 dbSNP
rs1195587504 1005 dbSNP
rs773548777 1009 dbSNP
rs1463474691 1015 dbSNP
rs376280597 1016 dbSNP
rs865992525 1017 dbSNP
rs113603232 1020 dbSNP
rs771308640 1031 dbSNP
rs370620179 1035 dbSNP
rs1452058520 1042 dbSNP
rs773891053 1043 dbSNP
rs767646729 1048 dbSNP
rs775787949 1058 dbSNP
rs890033850 1081 dbSNP
rs1282008889 1083 dbSNP
rs1243077446 1095 dbSNP
rs1340206483 1113 dbSNP
rs772481317 1114 dbSNP
rs138550674 1117 dbSNP
rs1455091387 1129 dbSNP
rs1387086088 1149 dbSNP
rs1320039948 1157 dbSNP
rs1457781167 1166 dbSNP
rs1387418527 1173 dbSNP
rs587716093 1186 dbSNP
rs1215826798 1191 dbSNP
rs909761476 1197 dbSNP
rs181006636 1209 dbSNP
rs1185171555 1210 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uacaggguggggguGAGGACa 5'
                        |||||| 
Target 5' ------------auCUCCUGa 3'
1 - 9
2
miRNA  3' uacaGGGUGGGG-GUGAGGaca 5'
              ||||||:|   ||||   
Target 5' uccgCCCACCUCGGCCUCC--- 3'
18 - 36
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000368905.4 | 3UTR | AUCUCCUGACCUCGUGAUCCGCCCACCUCGGCCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
256 hsa-miR-4433a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088097 SEPT2 septin 2 2 2
MIRT143134 MGRN1 mahogunin ring finger 1 2 2
MIRT153912 NCOA3 nuclear receptor coactivator 3 2 2
MIRT154894 GNAS GNAS complex locus 2 4
MIRT200996 ZNF805 zinc finger protein 805 2 2
MIRT215729 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT235593 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT263250 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT317951 CDC5L cell division cycle 5 like 2 4
MIRT325572 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT354739 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT444552 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 4
MIRT446978 SUSD5 sushi domain containing 5 2 2
MIRT451036 ZNF610 zinc finger protein 610 2 2
MIRT451596 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT452025 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452594 CA6 carbonic anhydrase 6 2 2
MIRT452768 TCEA3 transcription elongation factor A3 2 4
MIRT452959 ZNF844 zinc finger protein 844 2 2
MIRT453191 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453382 RHD Rh blood group D antigen 2 2
MIRT453685 CEBPD CCAAT/enhancer binding protein delta 2 2
MIRT455272 DDX39B DExD-box helicase 39B 2 8
MIRT455346 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT456494 SERAC1 serine active site containing 1 2 2
MIRT456585 NID1 nidogen 1 2 2
MIRT456888 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457123 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT457852 ZNF324B zinc finger protein 324B 2 2
MIRT457987 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT459278 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT459625 SLC25A33 solute carrier family 25 member 33 2 2
MIRT459715 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT460057 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460182 UNK unkempt family zinc finger 2 6
MIRT460288 PDE11A phosphodiesterase 11A 2 2
MIRT460841 EGF epidermal growth factor 2 4
MIRT460860 TBC1D19 TBC1 domain family member 19 2 2
MIRT461519 EMC7 ER membrane protein complex subunit 7 2 2
MIRT461729 SLC27A1 solute carrier family 27 member 1 2 4
MIRT461821 SNAP23 synaptosome associated protein 23 2 2
MIRT462066 CCDC77 coiled-coil domain containing 77 2 4
MIRT462084 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462508 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 10
MIRT464239 VCP valosin containing protein 2 2
MIRT465316 TRAF5 TNF receptor associated factor 5 2 2
MIRT466549 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467128 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468091 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT469630 RAD21 RAD21 cohesin complex component 2 6
MIRT471097 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472704 MYBL1 MYB proto-oncogene like 1 2 2
MIRT472830 MTMR10 myotubularin related protein 10 2 2
MIRT472872 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT472895 MTDH metadherin 2 2
MIRT473728 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT473859 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474047 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT474297 LAMC1 laminin subunit gamma 1 2 2
MIRT474658 KLF13 Kruppel like factor 13 2 2
MIRT475234 IKZF3 IKAROS family zinc finger 3 2 2
MIRT475500 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT475742 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT475793 HDGF heparin binding growth factor 2 2
MIRT477254 ERGIC2 ERGIC and golgi 2 2 2
MIRT478228 DDX52 DExD-box helicase 52 2 2
MIRT478393 DCTN5 dynactin subunit 5 2 2
MIRT478754 CS citrate synthase 2 2
MIRT478827 CRKL CRK like proto-oncogene, adaptor protein 2 4
MIRT480234 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480597 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT484121 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT484689 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486331 C11orf54 chromosome 11 open reading frame 54 2 4
MIRT488599 FAM3C family with sequence similarity 3 member C 2 8
MIRT488833 MRRF mitochondrial ribosome recycling factor 2 2
MIRT492523 RAB15 RAB15, member RAS oncogene family 2 4
MIRT493632 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500026 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501075 SMAD7 SMAD family member 7 2 8
MIRT503094 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503336 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT505465 STMN1 stathmin 1 2 4
MIRT505726 SERTAD3 SERTA domain containing 3 2 4
MIRT509333 MS4A4A membrane spanning 4-domains A4A 2 2
MIRT509978 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 4
MIRT513068 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT513446 EMP1 epithelial membrane protein 1 2 6
MIRT513736 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT513996 CENPQ centromere protein Q 2 4
MIRT516538 MIXL1 Mix paired-like homeobox 2 2
MIRT517606 SAV1 salvador family WW domain containing protein 1 2 2
MIRT518064 CEP89 centrosomal protein 89 2 2
MIRT518119 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT518325 WDR92 WD repeat domain 92 2 2
MIRT519048 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT520972 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521359 RPL35A ribosomal protein L35a 2 2
MIRT523359 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT523801 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT524622 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT525550 PHB2 prohibitin 2 2 4
MIRT529709 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT531605 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT532387 UMPS uridine monophosphate synthetase 2 2
MIRT534468 SCD stearoyl-CoA desaturase 2 4
MIRT537546 ETNK1 ethanolamine kinase 1 2 2
MIRT541619 C11orf31 selenoprotein H 2 2
MIRT548380 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT549523 HDDC2 HD domain containing 2 2 2
MIRT549774 SOD2 superoxide dismutase 2 2 2
MIRT550578 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551498 CENPN centromere protein N 2 4
MIRT552301 ITGA3 integrin subunit alpha 3 2 2
MIRT555400 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556399 LUC7L LUC7 like 2 2
MIRT557047 HOXB3 homeobox B3 2 2
MIRT558072 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 2
MIRT559659 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT561239 ZNF354B zinc finger protein 354B 2 2
MIRT566899 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT568786 FAM120B family with sequence similarity 120B 2 2
MIRT574014 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT574885 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 2
MIRT575243 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576194 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576309 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576484 Lhx4 LIM homeobox protein 4 2 3
MIRT576646 Mill2 MHC I like leukocyte 2 1 1
MIRT576708 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576855 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576950 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT617133 ZNF556 zinc finger protein 556 2 4
MIRT617928 ZNF783 zinc finger family member 783 2 2
MIRT618981 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT621100 SIX3 SIX homeobox 3 2 2
MIRT624537 BROX BRO1 domain and CAAX motif containing 2 2
MIRT625663 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT627059 DCTN6 dynactin subunit 6 2 2
MIRT628319 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT630859 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632295 TMEM65 transmembrane protein 65 2 2
MIRT634115 ZNF207 zinc finger protein 207 2 2
MIRT634736 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635655 NDST3 N-deacetylase and N-sulfotransferase 3 2 2
MIRT635772 PDCL3 phosducin like 3 2 2
MIRT635911 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT636365 OGFRL1 opioid growth factor receptor like 1 2 4
MIRT637251 GLRX2 glutaredoxin 2 2 2
MIRT638705 FZD4 frizzled class receptor 4 2 2
MIRT639640 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT639676 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT642267 SMIM17 small integral membrane protein 17 2 2
MIRT642372 ZNF581 zinc finger protein 581 2 2
MIRT643545 SLC25A17 solute carrier family 25 member 17 2 2
MIRT647994 PDE12 phosphodiesterase 12 2 2
MIRT649094 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT650993 ZNF770 zinc finger protein 770 2 2
MIRT651956 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT652977 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT654389 RBM12B RNA binding motif protein 12B 2 2
MIRT655637 OLFML2A olfactomedin like 2A 2 2
MIRT655729 NRXN3 neurexin 3 2 2
MIRT658171 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT660937 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662112 CERKL ceramide kinase like 2 2
MIRT662302 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT662993 TMEM59 transmembrane protein 59 2 2
MIRT663071 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663704 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663864 MUC20 mucin 20, cell surface associated 2 2
MIRT665185 HAUS5 HAUS augmin like complex subunit 5 2 4
MIRT665402 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665688 TNPO3 transportin 3 2 2
MIRT665795 TMEM170A transmembrane protein 170A 2 2
MIRT665847 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT666999 PDPN podoplanin 2 2
MIRT667598 LIPC lipase C, hepatic type 2 2
MIRT668576 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT670960 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT671187 ZNF891 zinc finger protein 891 2 2
MIRT671739 ZNF451 zinc finger protein 451 2 2
MIRT672745 ZNF585B zinc finger protein 585B 2 4
MIRT673446 ZNF583 zinc finger protein 583 2 2
MIRT679843 GPR75 G protein-coupled receptor 75 2 2
MIRT680556 ZNF584 zinc finger protein 584 2 2
MIRT680661 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT681285 RFC2 replication factor C subunit 2 2 2
MIRT683264 ZNF329 zinc finger protein 329 2 2
MIRT684519 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT685065 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685157 DTWD2 DTW domain containing 2 2 2
MIRT685168 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685470 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686001 NEK4 NIMA related kinase 4 2 2
MIRT687027 RNF24 ring finger protein 24 2 2
MIRT687543 MOB1B MOB kinase activator 1B 2 2
MIRT687592 MANEAL mannosidase endo-alpha like 2 2
MIRT687753 KIAA1328 KIAA1328 2 2
MIRT688050 GLUL glutamate-ammonia ligase 2 2
MIRT688374 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT688802 CBFA2T3 CBFA2/RUNX1 translocation partner 3 2 2
MIRT688957 ATXN3 ataxin 3 2 2
MIRT689281 C5AR2 complement component 5a receptor 2 2 2
MIRT689988 NNMT nicotinamide N-methyltransferase 2 2
MIRT689997 MMP17 matrix metallopeptidase 17 2 2
MIRT690014 LUZP2 leucine zipper protein 2 2 2
MIRT690161 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690379 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690563 MICA MHC class I polypeptide-related sequence A 2 2
MIRT691891 EVC EvC ciliary complex subunit 1 2 2
MIRT693107 SCNM1 sodium channel modifier 1 2 2
MIRT693832 ZFP64 ZFP64 zinc finger protein 2 2
MIRT694105 ZNF446 zinc finger protein 446 2 2
MIRT694179 ZNF486 zinc finger protein 486 2 2
MIRT694475 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694998 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695031 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695163 TCTN2 tectonic family member 2 2 2
MIRT695525 SLC25A34 solute carrier family 25 member 34 2 2
MIRT696067 ZNF264 zinc finger protein 264 2 2
MIRT696616 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696661 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696705 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT697173 INMT indolethylamine N-methyltransferase 2 2
MIRT697303 ZNF652 zinc finger protein 652 2 2
MIRT697491 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT698657 TERF2 telomeric repeat binding factor 2 2 2
MIRT699042 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699185 SLX4IP SLX4 interacting protein 2 2
MIRT699598 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700150 RNF115 ring finger protein 115 2 2
MIRT700720 PNO1 partner of NOB1 homolog 2 2
MIRT700870 PER2 period circadian clock 2 2 2
MIRT700912 PDXK pyridoxal kinase 2 2
MIRT701095 PAPOLG poly(A) polymerase gamma 2 2
MIRT701194 OTUD3 OTU deubiquitinase 3 2 2
MIRT702203 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702272 LHX4 LIM homeobox 4 2 3
MIRT703125 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703252 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703262 GNL3L G protein nucleolar 3 like 2 2
MIRT703440 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704321 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704393 CTSS cathepsin S 2 2
MIRT704483 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704880 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT704926 CCDC36 coiled-coil domain containing 36 2 2
MIRT705175 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT706561 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT707048 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT711497 PGD phosphogluconate dehydrogenase 2 2
MIRT716644 EPGN epithelial mitogen 2 2
MIRT720083 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT722288 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT725468 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4433a Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4433a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4433a Vincristine 5978 approved resistant cell line (W1)
hsa-mir-4433a Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4433a-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-4433a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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