pre-miRNA Information
pre-miRNA hsa-mir-3911   
Genomic Coordinates chr9: 127690687 - 127690795
Description Homo sapiens miR-3911 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3911
Sequence 12| UGUGUGGAUCCUGGAGGAGGCA |33
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
431152 7 ClinVar
COSM3847691 15 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs943029638 2 dbSNP
rs780635543 3 dbSNP
rs371437556 6 dbSNP
rs1135401819 7 dbSNP
rs748706130 14 dbSNP
rs1403241180 15 dbSNP
rs779344153 17 dbSNP
rs755366929 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF529   
Synonyms -
Description zinc finger protein 529
Transcript NM_001145649   
Other Transcripts NM_001145650 , NM_020951   
Expression
Putative miRNA Targets on ZNF529
3'UTR of ZNF529
(miRNA target sites are highlighted)
>ZNF529|NM_001145649|3'UTR
   1 AATAAATGTATAAAGTGGTTTTTTATTTCTGATTTTCACAGGAAAATACTGTGGATGGATTTAATAGGTAATCAAGGCAA
  81 TTCAGTATCTCCCTCTCTTAAAGTCTGTTTTTAGACTTCATGGTCATTCTGTATGTAGACGTAGAATTGCTTAGTCATAG
 161 CTGATATATACTTATAGCTTTGTTAGATGTTGCCAAATATTTCTCCTTTTTATGTTAAAAAGTTTTTTTCATGAGTTTCT
 241 CATCCTGGCATGTTTTGTTTACAATAGCTTTTGATGTTTGTATTATTGCTCTTTTGACTATTCAGTTTTTTAATTGTAAT
 321 ATTACTTCAATATCTTTTCTGCATTGTAATTCTTTGCTTGTGATATCTATACTTACTTATTTTCCTCCACAGAGTTAGCA
 401 CTCCTAGTCAGATACAATGTATTTTTACAGTCTTACAGCTCATCATTTTGTGTAATGTTGTTTTGTTTTGTTTTAAATGA
 481 TAGAAGTGTGATCTCCTTTCCATTTTCATCCAATTGTTGACTTCTCTTTAAATTTCTACTTTATTTTGATACAACATATT
 561 CCCCCCAAAAAAACACATACATAGGAACTGGTTATATTCCACCATAACACACACACACACACACACACACTATATACATA
 641 TAGTGTATATACACATATAGTGTATATAGTGTATGTGTGATGTATACTATACATATCACATATACTATATGTGTGTATAT
 721 AGTGTGTGATGTATATGTGTGTGATGTATACTATATATGCCCACACATGCACTACATAACACACTATATATATATATATA
 801 TATACACACACACACACACAATATATGTATATATAGTATATACACTATATACTGGGCACTATATATATATAGTGTGTATG
 881 TGTGTTATATTGGAATATAACCAGTTCCTTTAAGCAGTCTTTTTACCTGCAGGCTATACCAACCAGGATCCAAATGAAGA
 961 GAACTCTTTTAAATATTTGATAAAACTACTCACCCAGTAAGTCTCTTAAAATTTATCATTCTCTTAAAGTATCACTCTAA
1041 AATTTGTCAAACACCTTTAAAAGGGGAGAAAAAATGACCACTGAACTTACATTAAGAGAATTTACAACTATATATTAACA
1121 TGGCTTCAATTGTTTTTTTAATCTATTATCATTATTTTTCTTTTTATTCCCTCTCAGAGTTGACTTACTAGGTTTGGGCA
1201 TTTCAACAATCAGCAGACCTTCTTTGGTTTAACTAATCTCATTTAACTCCAAAATCATCTCTCTCTTAGGACTGCTGACT
1281 TGGTTATGCAGTCAATGAGATCACGAGCCACTGGTTATTGGATTTTTTTTCTTTTTTTTTAGACAGAGTTTTGCTCTTGT
1361 TGCCTAGGCTGGAGTGCAGTGGCGCAGTCTTGGCTCACCTCAACCTCTGCCTCCCAGGTTCAGGCTATTCTCCTGCTCAG
1441 CCTCCTGATTAGCTGGGATTACAGGCATGCGCCACCATGACCGGCTAATTTTATATTTTTAGTAGAGACGGGATATCTCC
1521 GTGTTGGTCAGTCTGGTCTCAAACTCCCGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGC
1601 ATGAGCCACCGCACCCAGCCTGGTTATTGGATTTATTTATTTATTTTGAGATAGAGCCTTGCTCTGTCACCAGGCCGGAG
1681 TGCAGTGGTGTCATCTCAGATCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCCCCTGCCTCAGCCTGCCAAGTAGC
1761 TGGGATTACAGGCATGCGCCACCATGCCCAGCTAATTGTATTTTAGTAGATATGGAGTTTCACCACGTTGGCCAAGACAG
1841 TCTCGATTTCCTGACCTTGTGATCCCCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACGCCTGT
1921 CCGGTTATTTGATTTTTATAAGAAAATTTTACTATTATTTTCAGATAAATTTATGTCACTGTCATTCATTACATTTTAAT
2001 TTTTGAAACTGATGTCTTTCCCAGAATTTATGTACTCTATAACGGTGTGAATGATTACCAGTATTAAGCCATTTTCTCAT
2081 CTGATATATTGAGCTATGTTTTATGTAAGTATTGCTTATTCAAGTAGTTTTAAAAGATATGTAATTGGTTGTTGTTTCAT
2161 GTCCTACACAGTAAGAACAAGAGTATGTTAACCTTTTTGTCAGGATATTTGCTATTTCATATCTTTGAAATAGAGTAGTA
2241 GCTCTATTTCTAACTAAATTCTATTTATGTAACAACACAGCTAATTTACTCTTGGATCTCATTCTCCCTTTTTATCCTGA
2321 GTTACCATCAGTGCTAATGTTCCTCTTTTGGGTATAGTTCTCCAGGAGAACTTGTCCTATATTTCTTTGTGTGTGTTTTT
2401 TTCCTTCCAGCTTAAACAAATTAAAACTAAATATCTAAACCTTGTATACAGACATTAAAATTAGTGAGAGAAACAAAATA
2481 TCCTTGTGTCTTGGCTTTTACTTTTTGAAGTCATTAACAAATAATAAATTAATGAATAAAATGTGTCCTTATTATGTTTT
2561 CCTTGTTTGTAGTTACAGCTATATTTTTATCATATTAACATTTTTCACTTAACTTCGTAATGAACTTATGGCATTTCACA
2641 CTTACTCGAAACCATAATATAATTATTATTGGTGGTATTACTGTTTGGTTTTTACTATTTTTACTCAAAAACATAAAACT
2721 TCACCATTCTTTCCATTTTCATTTGCCCCTTTATTCTTTCTGACTTTTCTCTAAGCCTGCATAGGAGCTTTATTCTCATA
2801 TTCAATAGGATAGGATATTGCAGTCTCATCCTGTTTTCTGCTGTCCTGCACCATTAAATTTTATATGTCCTTGAAGGAAT
2881 TCAATTTAATGGCAACTAATATATGTATGTTAGGGACAGGTAAAGAGTCTGTGACTGAGATTTCTGGAGTTATATAACCC
2961 CTGCGCCACCCCCCACCCCAACTCCAACTTGCCAGAATTCACCCCTTAACCTGCAATGTGATTGTATTTGGACATAGGGC
3041 AATGAGGACATAAGAATGTGATTCTAATTTGATACAAATGGTGATCTTATGAGAAGAGGAAGGAGAGACGTCTCTTCCTA
3121 TGCTCACACACAAAGGAAAGTCCACATGAGGACACAAGGAGAAGCCAAGAGAGCCCTTACCAGGAATTAAACCTGCTAAT
3201 CCCTATTTTAATTAGAACAGTGAGAAAATAAATATCTGTATTTAAGCCTCAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acGGAGGAGG-UCCUAG-GUGUGu 5'
            :|||:||| | | || ||||| 
Target 5' cgTCTCTTCCTATGCTCACACACa 3'
3109 - 3132 136.00 -22.30
2
miRNA  3' acggaGGAGGUC-CUAGGUGUGu 5'
               |||| :| ||||||| | 
Target 5' cccgaCCTCAGGTGATCCACCCg 3'
1546 - 1568 133.00 -20.60
3
miRNA  3' acggaGGAGGUCCU-AGGUGUGu 5'
               |:| ::| | |:||||| 
Target 5' atgaaCTTATGGCATTTCACACt 3'
2620 - 2642 133.00 -10.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN20079353 2 COSMIC
COSN31542303 18 COSMIC
COSN30106140 23 COSMIC
COSN23585581 31 COSMIC
COSN31482261 31 COSMIC
COSN30151140 53 COSMIC
COSN30503101 58 COSMIC
COSN31581918 60 COSMIC
COSN31525906 61 COSMIC
COSN30177285 66 COSMIC
COSN31519490 71 COSMIC
COSN31588938 73 COSMIC
COSN21949205 108 COSMIC
COSN30691814 122 COSMIC
COSN20115773 455 COSMIC
COSN20115776 457 COSMIC
COSN9356388 468 COSMIC
COSN26298510 485 COSMIC
COSN20115772 785 COSMIC
COSN32055806 1053 COSMIC
COSN31961550 1304 COSMIC
COSN9849816 1521 COSMIC
COSN23706513 1578 COSMIC
COSN25859965 1866 COSMIC
COSN25589080 1869 COSMIC
COSN15208651 1874 COSMIC
COSN1767362 2356 COSMIC
COSN1767361 2358 COSMIC
COSN25649579 2704 COSMIC
COSN20115768 2871 COSMIC
COSN25508066 2919 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs775187673 8 dbSNP
rs764694417 10 dbSNP
rs759049681 18 dbSNP
rs1354451541 28 dbSNP
rs776457645 43 dbSNP
rs770801284 48 dbSNP
rs1057121736 55 dbSNP
rs1410532076 57 dbSNP
rs1203420222 66 dbSNP
rs938764193 68 dbSNP
rs1251284269 69 dbSNP
rs927340215 71 dbSNP
rs1049694675 78 dbSNP
rs369725168 99 dbSNP
rs1278415983 103 dbSNP
rs375236315 103 dbSNP
rs979935018 107 dbSNP
rs767769701 108 dbSNP
rs1257990284 117 dbSNP
rs757699878 118 dbSNP
rs751988790 119 dbSNP
rs764627640 120 dbSNP
rs1463027313 122 dbSNP
rs1171233697 131 dbSNP
rs950644746 132 dbSNP
rs1434935870 133 dbSNP
rs1030439615 134 dbSNP
rs371856197 140 dbSNP
rs558124097 141 dbSNP
rs1295437892 144 dbSNP
rs918192759 147 dbSNP
rs997110371 149 dbSNP
rs1230620333 158 dbSNP
rs1301360498 162 dbSNP
rs182684905 164 dbSNP
rs938218556 171 dbSNP
rs575501230 175 dbSNP
rs775571924 181 dbSNP
rs1484756290 182 dbSNP
rs765389144 182 dbSNP
rs1204354028 186 dbSNP
rs557256658 187 dbSNP
rs531109591 189 dbSNP
rs535609484 193 dbSNP
rs1451257172 208 dbSNP
rs1277092172 210 dbSNP
rs1223380182 215 dbSNP
rs1007020032 218 dbSNP
rs1324403798 230 dbSNP
rs1393954056 230 dbSNP
rs759686280 240 dbSNP
rs1452032218 250 dbSNP
rs1288665847 251 dbSNP
rs1285193728 257 dbSNP
rs1386243533 262 dbSNP
rs1437888059 264 dbSNP
rs1021374016 269 dbSNP
rs1043213998 274 dbSNP
rs568570715 276 dbSNP
rs1303613832 280 dbSNP
rs1315385390 286 dbSNP
rs1237972781 288 dbSNP
rs1297436923 296 dbSNP
rs892020960 300 dbSNP
rs1442640458 321 dbSNP
rs1211712592 322 dbSNP
rs1057446884 330 dbSNP
rs776965385 332 dbSNP
rs938625942 334 dbSNP
rs989086112 338 dbSNP
rs1405266515 346 dbSNP
rs955888667 355 dbSNP
rs1159460457 357 dbSNP
rs1413152465 358 dbSNP
rs1019515325 367 dbSNP
rs553572270 369 dbSNP
rs770607214 370 dbSNP
rs752321921 372 dbSNP
rs1177952103 376 dbSNP
rs909061566 380 dbSNP
rs983291079 385 dbSNP
rs1371384097 392 dbSNP
rs889672198 394 dbSNP
rs746857805 404 dbSNP
rs1308029528 407 dbSNP
rs923189114 414 dbSNP
rs1231252984 415 dbSNP
rs1028290489 418 dbSNP
rs142899174 419 dbSNP
rs1241638648 430 dbSNP
rs964310362 432 dbSNP
rs570952298 437 dbSNP
rs1480065559 439 dbSNP
rs1462110119 442 dbSNP
rs898608300 457 dbSNP
rs68121045 459 dbSNP
rs149720452 460 dbSNP
rs59616372 460 dbSNP
rs77850123 460 dbSNP
rs10678581 463 dbSNP
rs112368357 463 dbSNP
rs386809011 463 dbSNP
rs1167596437 465 dbSNP
rs1352808311 465 dbSNP
rs796530855 465 dbSNP
rs1461590867 468 dbSNP
rs1308010478 477 dbSNP
rs1225646108 479 dbSNP
rs1298912703 480 dbSNP
rs148559265 484 dbSNP
rs1292467290 488 dbSNP
rs537458013 493 dbSNP
rs1451900397 495 dbSNP
rs1229959748 526 dbSNP
rs1383435186 528 dbSNP
rs1338179081 533 dbSNP
rs533161420 535 dbSNP
rs979188499 540 dbSNP
rs1204628327 544 dbSNP
rs1276279974 549 dbSNP
rs1450965085 559 dbSNP
rs759547030 561 dbSNP
rs1186184271 563 dbSNP
rs1257240028 566 dbSNP
rs1037105280 567 dbSNP
rs772155892 568 dbSNP
rs1418022508 571 dbSNP
rs896670262 573 dbSNP
rs1427953381 575 dbSNP
rs1372582386 580 dbSNP
rs1056615543 582 dbSNP
rs1022225179 584 dbSNP
rs1359497496 585 dbSNP
rs938249771 594 dbSNP
rs1268294695 595 dbSNP
rs926821151 606 dbSNP
rs1491087066 608 dbSNP
rs34179809 609 dbSNP
rs869163115 609 dbSNP
rs979802418 622 dbSNP
rs1299193095 628 dbSNP
rs1245489912 629 dbSNP
rs1345191505 629 dbSNP
rs1209701689 631 dbSNP
rs1280661811 631 dbSNP
rs141290818 631 dbSNP
rs1443306701 631 dbSNP
rs1491541387 631 dbSNP
rs36037467 631 dbSNP
rs755370278 631 dbSNP
rs760035912 631 dbSNP
rs1491327974 632 dbSNP
rs947066715 633 dbSNP
rs1185240725 635 dbSNP
rs892047505 638 dbSNP
rs1035911045 641 dbSNP
rs1003119519 648 dbSNP
rs914336745 653 dbSNP
rs988563107 654 dbSNP
rs1435705425 657 dbSNP
rs1322545742 658 dbSNP
rs942138410 660 dbSNP
rs1218230779 661 dbSNP
rs955961710 668 dbSNP
rs1016904092 669 dbSNP
rs1275034235 669 dbSNP
rs189710417 671 dbSNP
rs1221238496 673 dbSNP
rs986562600 674 dbSNP
rs1048039820 675 dbSNP
rs929113741 677 dbSNP
rs1209878264 681 dbSNP
rs1443231999 689 dbSNP
rs1250499328 691 dbSNP
rs1289413813 707 dbSNP
rs1244932337 708 dbSNP
rs953968291 709 dbSNP
rs1360131933 710 dbSNP
rs1247438858 715 dbSNP
rs1479135034 717 dbSNP
rs1028194293 718 dbSNP
rs1380416349 720 dbSNP
rs1161224812 722 dbSNP
rs976004773 722 dbSNP
rs1360661545 724 dbSNP
rs1392241457 724 dbSNP
rs1288878592 731 dbSNP
rs995940847 733 dbSNP
rs1491498672 736 dbSNP
rs1363322107 737 dbSNP
rs1491385083 737 dbSNP
rs1163401768 739 dbSNP
rs943285643 742 dbSNP
rs1328887884 744 dbSNP
rs910248386 745 dbSNP
rs1270529656 749 dbSNP
rs979039635 765 dbSNP
rs1213082604 767 dbSNP
rs1268127825 769 dbSNP
rs968223543 770 dbSNP
rs143970383 772 dbSNP
rs1168963610 775 dbSNP
rs1020665505 776 dbSNP
rs1415507287 777 dbSNP
rs143500333 778 dbSNP
rs1262588784 785 dbSNP
rs201905035 785 dbSNP
rs200800725 786 dbSNP
rs201960962 786 dbSNP
rs1163840533 788 dbSNP
rs200517643 788 dbSNP
rs896535798 788 dbSNP
rs1407766626 789 dbSNP
rs1327714147 793 dbSNP
rs1350757752 796 dbSNP
rs1410744532 797 dbSNP
rs1188357506 799 dbSNP
rs1489932874 800 dbSNP
rs374313902 801 dbSNP
rs956265970 802 dbSNP
rs61648978 803 dbSNP
rs1035858537 805 dbSNP
rs10593037 805 dbSNP
rs1274109224 805 dbSNP
rs1358533243 805 dbSNP
rs1483513753 805 dbSNP
rs1491095167 805 dbSNP
rs28396441 805 dbSNP
rs397859248 805 dbSNP
rs1223440210 806 dbSNP
rs34309889 806 dbSNP
rs1258097392 807 dbSNP
rs140442780 807 dbSNP
rs372203861 807 dbSNP
rs375987417 807 dbSNP
rs749695661 807 dbSNP
rs1329410654 808 dbSNP
rs1003150755 809 dbSNP
rs1379704584 809 dbSNP
rs1452149189 809 dbSNP
rs906100295 809 dbSNP
rs938156767 811 dbSNP
rs905478791 813 dbSNP
rs1225165161 819 dbSNP
rs1022983259 820 dbSNP
rs1387558187 820 dbSNP
rs1006198507 821 dbSNP
rs1314884970 821 dbSNP
rs1488545706 821 dbSNP
rs58537943 821 dbSNP
rs72240473 821 dbSNP
rs750460092 821 dbSNP
rs770008090 821 dbSNP
rs1248010242 826 dbSNP
rs1295750114 826 dbSNP
rs887861369 826 dbSNP
rs1181919279 827 dbSNP
rs1215780222 827 dbSNP
rs1413262349 830 dbSNP
rs1343043493 838 dbSNP
rs185102587 845 dbSNP
rs1163366976 850 dbSNP
rs374818611 855 dbSNP
rs947067012 859 dbSNP
rs1458517711 863 dbSNP
rs1405111327 865 dbSNP
rs1371491662 872 dbSNP
rs1408921148 872 dbSNP
rs369074531 872 dbSNP
rs1288733687 873 dbSNP
rs1352176790 884 dbSNP
rs929371282 890 dbSNP
rs914264192 903 dbSNP
rs1311986231 911 dbSNP
rs1321748869 919 dbSNP
rs901722477 933 dbSNP
rs1040162480 934 dbSNP
rs943305195 936 dbSNP
rs1467959493 942 dbSNP
rs1205497322 944 dbSNP
rs910446907 947 dbSNP
rs1473797410 948 dbSNP
rs1053170920 949 dbSNP
rs934435668 951 dbSNP
rs1413730481 953 dbSNP
rs1424430234 954 dbSNP
rs564655994 961 dbSNP
rs1368885447 964 dbSNP
rs913551689 967 dbSNP
rs1308908872 968 dbSNP
rs751157470 971 dbSNP
rs1412727686 979 dbSNP
rs912274733 979 dbSNP
rs1379815848 986 dbSNP
rs373092651 987 dbSNP
rs541142979 988 dbSNP
rs1292799371 991 dbSNP
rs368851421 996 dbSNP
rs960720411 996 dbSNP
rs953866333 999 dbSNP
rs921202972 1001 dbSNP
rs73034119 1015 dbSNP
rs1484212382 1020 dbSNP
rs1176072528 1031 dbSNP
rs575637944 1045 dbSNP
rs1208502599 1061 dbSNP
rs962917079 1063 dbSNP
rs1483872531 1069 dbSNP
rs1200417518 1075 dbSNP
rs376780375 1083 dbSNP
rs779806867 1090 dbSNP
rs1448994104 1096 dbSNP
rs1169415755 1110 dbSNP
rs1392292017 1111 dbSNP
rs1004579745 1116 dbSNP
rs960819191 1127 dbSNP
rs1490884233 1128 dbSNP
rs1269267042 1129 dbSNP
rs137928661 1130 dbSNP
rs981577688 1133 dbSNP
rs1439928785 1140 dbSNP
rs760895852 1140 dbSNP
rs1318500310 1146 dbSNP
rs970315695 1148 dbSNP
rs1023182844 1160 dbSNP
rs1006639927 1171 dbSNP
rs542149578 1175 dbSNP
rs1217775908 1177 dbSNP
rs749463364 1180 dbSNP
rs1313194250 1200 dbSNP
rs905344433 1204 dbSNP
rs1211423427 1221 dbSNP
rs1464465805 1226 dbSNP
rs1189297112 1237 dbSNP
rs993618516 1259 dbSNP
rs1320810646 1263 dbSNP
rs1477152738 1267 dbSNP
rs1425573205 1268 dbSNP
rs901908783 1268 dbSNP
rs558196763 1277 dbSNP
rs928754894 1304 dbSNP
rs555810475 1305 dbSNP
rs764538046 1308 dbSNP
rs1457249305 1321 dbSNP
rs74419375 1330 dbSNP
rs117587021 1331 dbSNP
rs889042359 1331 dbSNP
rs1435271418 1341 dbSNP
rs146067966 1341 dbSNP
rs543288411 1341 dbSNP
rs1391158953 1351 dbSNP
rs1225766853 1354 dbSNP
rs1397596902 1357 dbSNP
rs1329088576 1361 dbSNP
rs1300449920 1374 dbSNP
rs1043682234 1378 dbSNP
rs1270082464 1383 dbSNP
rs1052790439 1384 dbSNP
rs1405455751 1385 dbSNP
rs1198401419 1389 dbSNP
rs1247538501 1405 dbSNP
rs1478865735 1408 dbSNP
rs1179756560 1415 dbSNP
rs1411069093 1420 dbSNP
rs2912443 1423 dbSNP
rs1481577963 1431 dbSNP
rs1323760629 1433 dbSNP
rs1351259489 1436 dbSNP
rs752711186 1438 dbSNP
rs1407082356 1439 dbSNP
rs912346967 1445 dbSNP
rs1050782851 1452 dbSNP
rs1286831047 1456 dbSNP
rs932378320 1458 dbSNP
rs147343165 1459 dbSNP
rs913591716 1467 dbSNP
rs765301193 1468 dbSNP
rs974277924 1469 dbSNP
rs759706380 1470 dbSNP
rs1290778258 1471 dbSNP
rs1250892620 1472 dbSNP
rs908450788 1482 dbSNP
rs577232046 1483 dbSNP
rs1250794637 1484 dbSNP
rs927674420 1496 dbSNP
rs1184193131 1497 dbSNP
rs1366676315 1505 dbSNP
rs981610072 1509 dbSNP
rs982836693 1510 dbSNP
rs1459918256 1511 dbSNP
rs1415400523 1513 dbSNP
rs559116092 1517 dbSNP
rs1427415405 1520 dbSNP
rs1307065613 1521 dbSNP
rs1262041670 1526 dbSNP
rs1410856843 1530 dbSNP
rs1331418054 1534 dbSNP
rs142900734 1548 dbSNP
rs1244084375 1549 dbSNP
rs1035128105 1555 dbSNP
rs1002309478 1557 dbSNP
rs1361767314 1558 dbSNP
rs570072146 1567 dbSNP
rs745646940 1568 dbSNP
rs1022469755 1570 dbSNP
rs1483237098 1573 dbSNP
rs558129617 1590 dbSNP
rs1311843777 1593 dbSNP
rs952376394 1608 dbSNP
rs1451165006 1609 dbSNP
rs892759379 1610 dbSNP
rs1053110242 1611 dbSNP
rs1390441561 1612 dbSNP
rs998499935 1619 dbSNP
rs1170024594 1621 dbSNP
rs890809122 1621 dbSNP
rs1395953308 1628 dbSNP
rs1050689267 1634 dbSNP
rs1337513343 1647 dbSNP
rs932410795 1648 dbSNP
rs1018953819 1658 dbSNP
rs899539736 1662 dbSNP
rs1343154893 1663 dbSNP
rs1382832758 1676 dbSNP
rs1038244445 1677 dbSNP
rs1454452693 1681 dbSNP
rs781006291 1690 dbSNP
rs3096637 1700 dbSNP
rs1244921877 1701 dbSNP
rs1442748283 1705 dbSNP
rs1187397765 1724 dbSNP
rs1010853418 1727 dbSNP
rs1184077933 1729 dbSNP
rs1450930481 1731 dbSNP
rs565689489 1732 dbSNP
rs1376251914 1736 dbSNP
rs371796299 1737 dbSNP
rs1204198558 1744 dbSNP
rs1173629814 1745 dbSNP
rs1350926513 1751 dbSNP
rs1288679949 1753 dbSNP
rs1244194421 1754 dbSNP
rs1359415187 1756 dbSNP
rs61396420 1765 dbSNP
rs1455654111 1771 dbSNP
rs980736965 1777 dbSNP
rs773152305 1778 dbSNP
rs1022800118 1785 dbSNP
rs989699827 1786 dbSNP
rs957080476 1791 dbSNP
rs1044871415 1794 dbSNP
rs1031144907 1798 dbSNP
rs947780409 1811 dbSNP
rs532360552 1813 dbSNP
rs1160288418 1814 dbSNP
rs1327018211 1815 dbSNP
rs890672969 1826 dbSNP
rs930929922 1827 dbSNP
rs1486584830 1835 dbSNP
rs1189078982 1839 dbSNP
rs919465941 1844 dbSNP
rs61259689 1845 dbSNP
rs996464188 1856 dbSNP
rs1239920087 1858 dbSNP
rs1191834554 1859 dbSNP
rs899612876 1860 dbSNP
rs1431975353 1863 dbSNP
rs1447258312 1866 dbSNP
rs1264848126 1869 dbSNP
rs966053235 1872 dbSNP
rs1038514822 1874 dbSNP
rs1292891854 1875 dbSNP
rs941228888 1888 dbSNP
rs549477275 1897 dbSNP
rs986202715 1901 dbSNP
rs953452056 1903 dbSNP
rs531346349 1914 dbSNP
rs774497575 1915 dbSNP
rs768019738 1922 dbSNP
rs560543123 1923 dbSNP
rs140852850 1942 dbSNP
rs980807570 1954 dbSNP
rs1301559827 1974 dbSNP
rs181749255 1999 dbSNP
rs1271453416 2000 dbSNP
rs1404489977 2010 dbSNP
rs1364748175 2012 dbSNP
rs1323953957 2014 dbSNP
rs538312054 2039 dbSNP
rs1407079225 2043 dbSNP
rs1417256373 2044 dbSNP
rs963357332 2057 dbSNP
rs1162789641 2062 dbSNP
rs989988929 2065 dbSNP
rs1425531659 2072 dbSNP
rs956783757 2078 dbSNP
rs1305234893 2087 dbSNP
rs1003453745 2091 dbSNP
rs747042771 2096 dbSNP
rs1196856273 2098 dbSNP
rs1308487713 2105 dbSNP
rs1375458864 2108 dbSNP
rs1226591585 2112 dbSNP
rs1031593917 2121 dbSNP
rs1311382648 2123 dbSNP
rs1479900424 2136 dbSNP
rs987560453 2137 dbSNP
rs1270139905 2140 dbSNP
rs906235949 2145 dbSNP
rs954995646 2150 dbSNP
rs575016329 2154 dbSNP
rs1204902916 2157 dbSNP
rs1029190485 2159 dbSNP
rs1233911754 2163 dbSNP
rs1481900526 2164 dbSNP
rs1180697941 2170 dbSNP
rs377286934 2185 dbSNP
rs1272951979 2191 dbSNP
rs947812899 2192 dbSNP
rs1196847861 2194 dbSNP
rs1388584475 2194 dbSNP
rs1428800258 2212 dbSNP
rs888163499 2219 dbSNP
rs1049233416 2222 dbSNP
rs1302240306 2223 dbSNP
rs3170326 2234 dbSNP
rs560009461 2235 dbSNP
rs899477578 2237 dbSNP
rs1341042601 2242 dbSNP
rs541238233 2250 dbSNP
rs944942038 2252 dbSNP
rs1309675721 2255 dbSNP
rs1208614392 2262 dbSNP
rs1255944664 2273 dbSNP
rs148030796 2295 dbSNP
rs1185514124 2307 dbSNP
rs190708523 2311 dbSNP
rs911922165 2329 dbSNP
rs886830221 2336 dbSNP
rs1275259121 2337 dbSNP
rs1438316015 2341 dbSNP
rs1187368638 2350 dbSNP
rs1352492779 2350 dbSNP
rs1046936945 2351 dbSNP
rs1421357721 2362 dbSNP
rs764784094 2379 dbSNP
rs986066698 2388 dbSNP
rs145723520 2396 dbSNP
rs1406735245 2397 dbSNP
rs1470639083 2403 dbSNP
rs754723317 2405 dbSNP
rs1363919176 2410 dbSNP
rs1401923858 2411 dbSNP
rs1271621062 2419 dbSNP
rs1003374954 2425 dbSNP
rs1217867642 2432 dbSNP
rs1301107994 2434 dbSNP
rs750781919 2438 dbSNP
rs1324873528 2445 dbSNP
rs989335163 2446 dbSNP
rs1206194686 2447 dbSNP
rs1173633394 2448 dbSNP
rs1479931733 2451 dbSNP
rs956781499 2464 dbSNP
rs1030831062 2468 dbSNP
rs1003483123 2490 dbSNP
rs906434680 2498 dbSNP
rs1476878760 2499 dbSNP
rs1192521672 2505 dbSNP
rs537530113 2509 dbSNP
rs35170134 2517 dbSNP
rs1481377527 2520 dbSNP
rs1156910930 2522 dbSNP
rs76165526 2524 dbSNP
rs1400805375 2525 dbSNP
rs536667492 2538 dbSNP
rs1183179423 2542 dbSNP
rs1347763055 2547 dbSNP
rs367622760 2552 dbSNP
rs1283035552 2556 dbSNP
rs1346583476 2581 dbSNP
rs1225865693 2584 dbSNP
rs948103843 2592 dbSNP
rs915239522 2593 dbSNP
rs1203079658 2596 dbSNP
rs1053758537 2609 dbSNP
rs1286531192 2616 dbSNP
rs140588785 2617 dbSNP
rs1269299486 2629 dbSNP
rs554041310 2629 dbSNP
rs924025448 2634 dbSNP
rs1179863605 2644 dbSNP
rs1222234971 2647 dbSNP
rs987631109 2647 dbSNP
rs1370911242 2648 dbSNP
rs1036476077 2653 dbSNP
rs944973312 2654 dbSNP
rs754669541 2664 dbSNP
rs1050387316 2666 dbSNP
rs1366529356 2672 dbSNP
rs1407176468 2688 dbSNP
rs1306643984 2695 dbSNP
rs954860830 2697 dbSNP
rs1443630305 2712 dbSNP
rs1281349049 2720 dbSNP
rs1245495576 2723 dbSNP
rs915237284 2726 dbSNP
rs922209615 2748 dbSNP
rs1378989525 2753 dbSNP
rs990010318 2762 dbSNP
rs1250914193 2782 dbSNP
rs1183952456 2793 dbSNP
rs778121079 2798 dbSNP
rs538417587 2805 dbSNP
rs1163776681 2810 dbSNP
rs1386708425 2815 dbSNP
rs1426880219 2843 dbSNP
rs1167082866 2847 dbSNP
rs1177800162 2849 dbSNP
rs758816211 2850 dbSNP
rs1398537563 2853 dbSNP
rs1407785564 2854 dbSNP
rs1159622173 2863 dbSNP
rs1442125435 2865 dbSNP
rs1241807514 2866 dbSNP
rs372257236 2869 dbSNP
rs1338730800 2870 dbSNP
rs199909272 2871 dbSNP
rs981911260 2872 dbSNP
rs10706940 2873 dbSNP
rs398034488 2873 dbSNP
rs199889075 2874 dbSNP
rs1385282794 2878 dbSNP
rs1226542281 2884 dbSNP
rs1023525638 2888 dbSNP
rs1017021460 2902 dbSNP
rs952526412 2907 dbSNP
rs1026635079 2911 dbSNP
rs1213991311 2912 dbSNP
rs1005180724 2914 dbSNP
rs951245209 2918 dbSNP
rs1447275683 2919 dbSNP
rs1316552601 2927 dbSNP
rs1283346830 2928 dbSNP
rs1187587717 2930 dbSNP
rs1372849115 2948 dbSNP
rs1240576542 2958 dbSNP
rs1462837343 2960 dbSNP
rs1170108343 2961 dbSNP
rs35994849 2962 dbSNP
rs1025391389 2964 dbSNP
rs59185276 2965 dbSNP
rs1337454996 2971 dbSNP
rs146792326 2972 dbSNP
rs531286004 2974 dbSNP
rs1008981911 2975 dbSNP
rs890715148 2975 dbSNP
rs1050669403 2989 dbSNP
rs1311942587 2992 dbSNP
rs1453379701 3007 dbSNP
rs1439219686 3008 dbSNP
rs1370866424 3016 dbSNP
rs1204298746 3020 dbSNP
rs1264429456 3030 dbSNP
rs567057664 3033 dbSNP
rs932249999 3035 dbSNP
rs1044891093 3042 dbSNP
rs1262036649 3044 dbSNP
rs915251009 3046 dbSNP
rs1195799669 3050 dbSNP
rs143546553 3058 dbSNP
rs559343993 3066 dbSNP
rs1177848620 3071 dbSNP
rs753985553 3074 dbSNP
rs1420565311 3075 dbSNP
rs1288442581 3079 dbSNP
rs1385956259 3082 dbSNP
rs981950639 3087 dbSNP
rs1054235639 3090 dbSNP
rs34336598 3094 dbSNP
rs149219315 3109 dbSNP
rs924054905 3110 dbSNP
rs1051777003 3120 dbSNP
rs933382847 3122 dbSNP
rs1219029536 3123 dbSNP
rs922118078 3127 dbSNP
rs2385654 3139 dbSNP
rs963970459 3146 dbSNP
rs1027082342 3148 dbSNP
rs775705397 3153 dbSNP
rs909466085 3154 dbSNP
rs1207770996 3157 dbSNP
rs769876732 3159 dbSNP
rs750732703 3174 dbSNP
rs1490294654 3180 dbSNP
rs2385655 3186 dbSNP
rs761740479 3194 dbSNP
rs951014705 3208 dbSNP
rs1432090030 3215 dbSNP
rs1025423932 3220 dbSNP
rs1003314150 3225 dbSNP
rs1158456743 3229 dbSNP
rs1364523634 3230 dbSNP
rs890661361 3232 dbSNP
rs753817793 3235 dbSNP
rs1212270149 3237 dbSNP
rs1050533281 3247 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293
Disease 57711.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM714643. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acggaggagguccuagGUGUGu 5'
                          ||||| 
Target 5' cacaugcacuacauaaCACACu 3'
1 - 22
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acggaggagguccuagGUGUGu 5'
                          ||||| 
Target 5' -acaugcacuacauaaCACACu 3'
1 - 21
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM714643
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000334116.7 | 3UTR | CACAUGCACUACAUAACACACUAUAUAUAUAUAUAUAUAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000334116.7 | 3UTR | ACAUGCACUACAUAACACACUAUAUAUAUAUAUAUAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA 0.714 0.14 0.800 0.1 4 Click to see details
BRCA -0.539 0.17 -0.900 0.02 5 Click to see details
HNSC -0.238 0.3 0.000 0.5 7 Click to see details
LUSC -0.204 0.4 -0.400 0.3 4 Click to see details
LUSC -0.204 0.4 -0.400 0.3 4 Click to see details
LUSC -0.204 0.4 -0.400 0.3 4 Click to see details
LUSC -0.204 0.4 -0.400 0.3 4 Click to see details
LUSC -0.204 0.4 -0.400 0.3 4 Click to see details
LUSC -0.204 0.4 -0.400 0.3 4 Click to see details
LUSC -0.204 0.4 -0.400 0.3 4 Click to see details
70 hsa-miR-3911 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT207399 MAT2A methionine adenosyltransferase 2A 2 6
MIRT284537 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT291946 TPM4 tropomyosin 4 2 2
MIRT293609 PVR poliovirus receptor 2 2
MIRT357688 PAIP2 poly(A) binding protein interacting protein 2 2 2
MIRT451607 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT452110 IFITM1 interferon induced transmembrane protein 1 2 2
MIRT457804 KLHL25 kelch like family member 25 2 2
MIRT462730 EFNB1 ephrin B1 2 2
MIRT463219 ZNF131 zinc finger protein 131 2 2
MIRT464141 VPS28 VPS28, ESCRT-I subunit 2 2
MIRT467582 SLC7A5 solute carrier family 7 member 5 2 6
MIRT470824 PLXND1 plexin D1 2 2
MIRT474230 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT478989 COLGALT1 collagen beta(1-O)galactosyltransferase 1 2 2
MIRT479462 CDK6 cyclin dependent kinase 6 2 2
MIRT483558 SYT2 synaptotagmin 2 2 2
MIRT484483 SLC9A1 solute carrier family 9 member A1 2 2
MIRT485224 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT490356 DPYSL5 dihydropyrimidinase like 5 2 4
MIRT493177 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT509802 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511815 HDGF heparin binding growth factor 2 2
MIRT512254 ARPP19 cAMP regulated phosphoprotein 19 2 6
MIRT513025 GPT2 glutamic--pyruvic transaminase 2 2 2
MIRT519640 ZNF772 zinc finger protein 772 2 4
MIRT531178 SIGLEC12 sialic acid binding Ig like lectin 12 (gene/pseudogene) 2 2
MIRT537870 EDA2R ectodysplasin A2 receptor 2 2
MIRT551914 IGLON5 IgLON family member 5 2 2
MIRT558359 DMTF1 cyclin D binding myb like transcription factor 1 2 2
MIRT559771 URGCP-MRPS24 URGCP-MRPS24 readthrough 2 4
MIRT559813 ZNF83 zinc finger protein 83 2 2
MIRT561999 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT565754 SERTAD2 SERTA domain containing 2 2 2
MIRT569423 DCAF8 DDB1 and CUL4 associated factor 8 2 2
MIRT569845 RGS5 regulator of G protein signaling 5 2 2
MIRT606928 CDK15 cyclin dependent kinase 15 2 2
MIRT607616 TMEM130 transmembrane protein 130 2 4
MIRT607629 TRIOBP TRIO and F-actin binding protein 2 2
MIRT607885 SATB1 SATB homeobox 1 2 2
MIRT607942 SSX2 SSX family member 2 2 4
MIRT608017 CARNS1 carnosine synthase 1 2 4
MIRT608036 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT608063 SSX2B SSX family member 2B 2 4
MIRT608558 SBK1 SH3 domain binding kinase 1 2 6
MIRT608915 NCDN neurochondrin 2 6
MIRT615876 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT618023 ELFN1 extracellular leucine rich repeat and fibronectin type III domain containing 1 2 2
MIRT620505 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT628101 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 2
MIRT628700 ZNF548 zinc finger protein 548 2 2
MIRT630658 POU2F1 POU class 2 homeobox 1 2 2
MIRT643508 ZNF28 zinc finger protein 28 2 2
MIRT646379 SLC22A6 solute carrier family 22 member 6 2 2
MIRT660041 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT687700 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT688858 CAMKK2 calcium/calmodulin dependent protein kinase kinase 2 2 2
MIRT690443 REPIN1 replication initiator 1 2 2
MIRT690456 ZNF33A zinc finger protein 33A 2 2
MIRT693796 RHOG ras homolog family member G 2 2
MIRT694274 ZNF529 zinc finger protein 529 2 4
MIRT697697 WAC WW domain containing adaptor with coiled-coil 2 2
MIRT700242 RCC2 regulator of chromosome condensation 2 2 2
MIRT701836 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT704255 DHCR24 24-dehydrocholesterol reductase 2 2
MIRT707203 SDK2 sidekick cell adhesion molecule 2 2 2
MIRT710365 CREB5 cAMP responsive element binding protein 5 2 2
MIRT711943 WDFY1 WD repeat and FYVE domain containing 1 2 2
MIRT715496 MAZ MYC associated zinc finger protein 2 2
MIRT719250 MS4A1 membrane spanning 4-domains A1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3911 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3911 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-3911 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-3911 Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3911 Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3911 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-mir-3911 Vincristine 5978 approved resistant cell line (W1)
hsa-mir-3911 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-miR-3911 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-3911 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3911 Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-3911 Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-3911 Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-3911 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3911 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3911 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

Error report submission