pre-miRNA Information
pre-miRNA hsa-mir-1245a   
Genomic Coordinates chr2: 188978092 - 188978161
Description Homo sapiens miR-1245a stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1245a
Sequence 45| AAGUGAUCUAAAGGCCUACAU |65
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN31562560 15 COSMIC
COSN26581044 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs906938680 2 dbSNP
rs1159117523 3 dbSNP
rs780486044 6 dbSNP
rs771479866 17 dbSNP
rs1002976932 18 dbSNP
rs1428029219 19 dbSNP
Putative Targets

Gene Information
Gene Symbol RBMXL1   
Synonyms RBM1
Description RNA binding motif protein, X-linked like 1
Transcript NM_001162536   
Other Transcripts NM_019610   
Expression
Putative miRNA Targets on RBMXL1
3'UTR of RBMXL1
(miRNA target sites are highlighted)
>RBMXL1|NM_001162536|3'UTR
   1 AAACAAACAAAACTTTGGACCAAAATCCCAGTTCAAAGAAACAAAAAAAAGAGTGGAAACTATTCTATCATAACTACCCA
  81 AGGACTACTAAAAGGAAAAATTGTGTTACCTTTTTTAAATTCCCTGTTAAGTCCCTTCCGTAATTTTTATGTTCTTGTGA
 161 GGAAAAAAGTAAAACATGTTTAATTTTATTTGACTTTATGACATTGCTTTTCAACAAGCAAATGTTAAATGTGTTAAGCC
 241 TTGTAGTACTAGTGTTGTAACTTTCCAAGTAAAGGTGTCCCTAAAGACCACTTCCTATCTGGTTTTTCCCAGTAAATGAG
 321 GCAAGCAATTCTAAGATCTTCCACAAAACATCTAGCCAACTAAAATGGAGAGATGAATCATTCTGCCTATACAAACAAGC
 401 TAGCTATTAGAGGGTGGTTGGAGTATGCTACTCATAAGATTTCAGGGTGTTTTCTAACTGAAATCTCACTGTTCTCAGTA
 481 TGCAAAACCTGAAATCAGATGCCTATGTAAGGAAAGTGCTATTCACCCAGTAAACCCAAAAAAAGCAAATGGATAATGCT
 561 GGCCATTTTGCCTTTCTGACATTTCCTTGGGAATCTGCAAGAACCTCCCCTTTCCCCTCCCACAATAAGACCATTTAAGT
 641 GTGTGCTAAACAACTACGGAATACTAAATAAAAAGTTTGGCCAAAACCAACCATGAAGCTGCAAAGGTGCTTGCTCTTAC
 721 TCTTTCAAATTTTTGCAACTCTAATGTCTCACTTTTAAAGGAACAGCTTGATTGCAAAGGAGAAAATAGATAAGCAATGA
 801 ATTTATCTCCAACTTCCTAAAGGCTTATGACTTCTAAAAAGTGAATCTATCAGCATTCCACATCAGATTTAAAGCATCAA
 881 ATGCCTGTGAAACAGCAAAGATGGTTGAAGATTGTGCTCATTATGTTTGTGGAGTGCTGATTGATTCACAGTAGATAACG
 961 CTGGCAGTAAGAGAAATCAAATGCTAAGAGTTGTTGAAGCAGAAGGCGGCTGATTGTTGGTAAGTCAGTGCAGTTGCATA
1041 AGCAGTGCTGTCAGAATTGGTTTGGTGCAGGCAATAGATTTTGCCTTCAAGGGTTCCTGTGGATCTCAGGAAGGCATCAG
1121 TGTTGATTAACACTCATAACTAGGGAGTGAGTGGTAGTTACTTAAGTAATTGACCAAATGGAAAAGGGGAAGTAATTAAG
1201 GAAATTGGTAAGTGGAGGTAGTCAGGAGGTTCTCGTGGTCCTTTACACAGATTTTACAGCTTTGGGTTTCATTTTGTTTA
1281 GCTAAAGTCATGGGGACAACTCTTCAATTTAGAACTTAAGATGAATTATAAAAATGATGGATATAAGTGGTAGCTCTATC
1361 TGGTGAAGTGTCTTGTCAGTAAGTGAAACATTTTTTTGTGGTGGCTTATCCACAAACAGTTTAGTTGTAGAATAAAACTT
1441 ATGAGTGACATCTGGAAAGTAACAACCATGCTAAGATGGCAAACACACTGGAAACAATTGGGCCACTTGGCTTTCTTTTG
1521 CTGTATTGTTTTATAAGCCTGCTTTACCTCCCCGTCTTGGAAACAAGTTTTAGTTTATTGCTTTGGAGACTAGAGCCAAT
1601 AGTGTAATGTTCTCAAAGGAAACAGACTTGAGTTGTTGGATTAGAGGAACTAACTCAACTTCTAATTTTTTTTGTTGTAA
1681 TTATGGCACTGTCATGTTTTAACATTTGCAACTAGGGATAGTAAGTACAACATTTTTAACTCTCATTTGGCAGACTACTA
1761 CTAATCACAGACCACAAGGGTAATGACCAAATTTATGTGGTTGTTACACTTCCATAGTTGTCTTAGCCGAATCCTTCCAT
1841 ATTCTTATGATTACTTGGGTTAAAGCTTCTGTGAGGACCTTTTGGCTCTTAAGATATCCTAAATATTTAAAATATTTAGA
1921 TATCCTAAATATAGGATATAGAGTTTGTACCAAATATGAATGAATATTGTTCAAAGCAAGGAGTATGTTAAAATGACCAG
2001 ACACCTGTTTGATAAATAGTTTACTGAACTAGCAGACGTGTGGAAAAAGAATCAGATCTTGATTCTTCTGGGTTTATACT
2081 GGTTGTAAAACAGAATGATATTAGAAAATGTTTTCCTTGTTTAAGTGGTAGTTGAACATAGAACTTGGGTATTATAGATC
2161 ACTTTTCACTTTTTGGAATGTTTTGTATTGAAACTTAATACAACTTTAACATGGCAAAAAAAAAAAAAATCCAAAATCTA
2241 TGAGATAATTTTGTTAAAGTTGGCTTGCTTGGGCGGGTGCTTGGTCCAGAGGGAGAAAAGAAGGCATGATTTCAGAATAC
2321 TCTGGCAGCTTTTTAAATTCAGCTTTATCAAGTTACAGTAAACTGTATCTGTTTAGAATTACAACTCAATGGTTATTTTG
2401 ACAGATGTATATGCCATGAAGCCACTGTCACCATCAACATGCAGAACACTTCCATCGCCCCCAAAAGATTCCTCAAGTTC
2481 CTTTGCAGTCCATCCCTCACGCTGCTGATTTGTCTTTGTCACCATATATTAGTTTGCTTTGTGGTGGTGTTTAGTATTTT
2561 ATATAAATGGGATTGTGTAGCATGTACTTTTTTGTTTATGGTTTCTTTCACACACAATGACTTTGAAATTCACCAGGTTG
2641 CAGTGTATCAGTAGCTTATTCCTTTTATTGCTGAGTAGTGTCCCATTATGTGAATATGCCATTATTTGTTTTTCTACTCA
2721 CCTGTTGATGGACCTTGGGATTGTTTCCAGTTTGGGGCTACTGTGAATAAAACTGTTAGGAACATTTGTGTACAAGCCAC
2801 TGTGTAGACATAGGTTTTCCTTTCTCTTGGGTAAATACCTACCAGTAAAATGGTTGGGTTGCATGGCAGATTTATGTTTA
2881 ATAAAGTAACTGCCAAACTGTTTGTTTTCCAAAGGGGCTATACCCTTTTATATTCCCACCAGGGTTGTATAGAGTTCCAA
2961 CTGCCAACACTCAGTTTTCAGCCATTCTGATGGGAATCTAGTGGTATCTCATTGTGGTTTTATTTTCATTTCCCCGGGTG
3041 ACTAATGCTGGTAAGCATCTTTTAAGGTACTTTTTGGCCAGTTGTATATTTTCTGTGAAGTGGCTGTCAAATCTTTTGCC
3121 CACTTTTAATTGGATTGTTTGTCTTATTGAGTTGTAAAAGTTCTTTATATATACTGTATTAAAGTCCTTTGTAAGACAAA
3201 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uacAUCCGGAA-AUCUAGUGAa 5'
             |:||: || ||||||||| 
Target 5' actTGGGTATTATAGATCACTt 3'
2143 - 2164 166.00 -15.40
2
miRNA  3' uacauccGGAAAUCUAGUGAa 5'
                 :|||  |||:||| 
Target 5' tccatatTCTTATGATTACTt 3'
1836 - 1856 134.00 -8.30
3
miRNA  3' uaCAUCCGGAAAUCUAGUGAa 5'
            ||:  |||  ||| |||| 
Target 5' agGTGTCCCTAAAGACCACTt 3'
273 - 293 127.00 -11.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30176444 12 COSMIC
COSN30176430 38 COSMIC
COSN30455758 42 COSMIC
COSN30567388 43 COSMIC
COSN26548204 88 COSMIC
COSN31499278 90 COSMIC
COSN31565125 99 COSMIC
COSN31531574 101 COSMIC
COSN18257091 103 COSMIC
COSN26558933 422 COSMIC
COSN30158085 476 COSMIC
COSN20090276 477 COSMIC
COSN26678643 488 COSMIC
COSN30174208 524 COSMIC
COSN31547619 592 COSMIC
COSN21726576 664 COSMIC
COSN31527541 732 COSMIC
COSN31586710 807 COSMIC
COSN31492859 828 COSMIC
COSN31547220 847 COSMIC
COSN30164632 889 COSMIC
COSN6049632 901 COSMIC
COSN28565070 908 COSMIC
COSN28570353 909 COSMIC
COSN28592895 928 COSMIC
COSN8638839 954 COSMIC
COSN28568242 959 COSMIC
COSN31609540 973 COSMIC
COSN31558396 978 COSMIC
COSN30560007 980 COSMIC
COSN31575578 1012 COSMIC
COSN31526419 1020 COSMIC
COSN13565354 1090 COSMIC
COSN28599367 1107 COSMIC
COSN5745179 1154 COSMIC
COSN23865799 1774 COSMIC
COSN31523205 2186 COSMIC
COSN29462477 2201 COSMIC
COSN19663987 2216 COSMIC
COSN31479440 2300 COSMIC
COSN20806274 3093 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1245825165 2 dbSNP
rs1388715590 4 dbSNP
rs747384060 6 dbSNP
rs759544354 9 dbSNP
rs373483318 10 dbSNP
rs753728141 13 dbSNP
rs760470330 19 dbSNP
rs1444309882 20 dbSNP
rs1226501342 21 dbSNP
rs772771062 27 dbSNP
rs1315415891 28 dbSNP
rs1434109538 33 dbSNP
rs1364641579 34 dbSNP
rs1318772222 35 dbSNP
rs1433214925 38 dbSNP
rs1345831582 42 dbSNP
rs546599173 51 dbSNP
rs760605088 51 dbSNP
rs771687449 51 dbSNP
rs1210759062 56 dbSNP
rs1209898159 57 dbSNP
rs1357939087 57 dbSNP
rs1271870044 64 dbSNP
rs533006555 68 dbSNP
rs1435650369 70 dbSNP
rs1197181953 71 dbSNP
rs191035536 72 dbSNP
rs879144292 85 dbSNP
rs950158104 88 dbSNP
rs1183584999 94 dbSNP
rs566202758 95 dbSNP
rs1367222423 102 dbSNP
rs1366185224 113 dbSNP
rs1300182581 117 dbSNP
rs1396077298 122 dbSNP
rs1464217404 123 dbSNP
rs544902023 128 dbSNP
rs1400819073 129 dbSNP
rs917429140 140 dbSNP
rs577453684 152 dbSNP
rs778619278 157 dbSNP
rs555897489 161 dbSNP
rs991711261 168 dbSNP
rs1337068001 176 dbSNP
rs564760773 199 dbSNP
rs1220131363 202 dbSNP
rs1258297960 212 dbSNP
rs543551914 229 dbSNP
rs576454319 231 dbSNP
rs185783620 235 dbSNP
rs1337907236 239 dbSNP
rs549692621 240 dbSNP
rs984166755 246 dbSNP
rs1444592086 257 dbSNP
rs951536466 261 dbSNP
rs1025689572 266 dbSNP
rs1476866179 275 dbSNP
rs1173182459 276 dbSNP
rs1167715488 286 dbSNP
rs1424596699 288 dbSNP
rs1469113497 289 dbSNP
rs1170525837 291 dbSNP
rs1404308790 293 dbSNP
rs998234751 294 dbSNP
rs566056509 297 dbSNP
rs965157736 302 dbSNP
rs1018084377 305 dbSNP
rs1401292072 308 dbSNP
rs754561587 322 dbSNP
rs1278456535 333 dbSNP
rs1322308698 339 dbSNP
rs1006743920 340 dbSNP
rs1233021064 349 dbSNP
rs1254579900 353 dbSNP
rs1347547414 355 dbSNP
rs893754100 357 dbSNP
rs10754258 359 dbSNP
rs368039953 363 dbSNP
rs1487384648 375 dbSNP
rs1190151135 376 dbSNP
rs1264174490 377 dbSNP
rs902178560 384 dbSNP
rs1442498312 389 dbSNP
rs1242336213 393 dbSNP
rs879218710 406 dbSNP
rs1046146010 409 dbSNP
rs1182314258 416 dbSNP
rs878892386 433 dbSNP
rs1484204664 436 dbSNP
rs1466354700 443 dbSNP
rs1249605299 446 dbSNP
rs753491668 455 dbSNP
rs917396486 465 dbSNP
rs1298228304 469 dbSNP
rs765954902 469 dbSNP
rs1343015646 474 dbSNP
rs539298851 477 dbSNP
rs937575292 482 dbSNP
rs910168954 489 dbSNP
rs1234408962 492 dbSNP
rs1285950897 496 dbSNP
rs984783478 497 dbSNP
rs111561056 505 dbSNP
rs757469737 507 dbSNP
rs1313887711 513 dbSNP
rs1488186374 514 dbSNP
rs1189762023 521 dbSNP
rs12068415 527 dbSNP
rs1180741099 528 dbSNP
rs976783369 529 dbSNP
rs1371790058 538 dbSNP
rs1298170779 539 dbSNP
rs1441409432 544 dbSNP
rs965457725 545 dbSNP
rs138844612 546 dbSNP
rs1364453156 549 dbSNP
rs1455933050 565 dbSNP
rs1294986419 577 dbSNP
rs1018050234 580 dbSNP
rs1387715905 586 dbSNP
rs1308942320 587 dbSNP
rs1375362800 590 dbSNP
rs1243018224 595 dbSNP
rs1370661677 599 dbSNP
rs567391476 616 dbSNP
rs985295081 618 dbSNP
rs1422370582 631 dbSNP
rs879836904 640 dbSNP
rs1165202036 641 dbSNP
rs548783958 648 dbSNP
rs958193427 657 dbSNP
rs1032220283 658 dbSNP
rs1176601599 661 dbSNP
rs1483393782 665 dbSNP
rs527329106 668 dbSNP
rs1179254907 677 dbSNP
rs902148325 680 dbSNP
rs1421558395 690 dbSNP
rs542071560 698 dbSNP
rs1166206752 700 dbSNP
rs1368719674 704 dbSNP
rs1024664079 706 dbSNP
rs559706023 714 dbSNP
rs1328847210 716 dbSNP
rs1013320938 722 dbSNP
rs1449446873 724 dbSNP
rs1247432567 725 dbSNP
rs1378993964 726 dbSNP
rs1226710541 728 dbSNP
rs1314881858 733 dbSNP
rs767601358 738 dbSNP
rs1256392570 743 dbSNP
rs1458971111 744 dbSNP
rs534283298 746 dbSNP
rs1236839743 750 dbSNP
rs1482212436 752 dbSNP
rs1183123463 753 dbSNP
rs1315545157 757 dbSNP
rs894923179 757 dbSNP
rs1168179685 764 dbSNP
rs1055963292 768 dbSNP
rs937561907 779 dbSNP
rs1171780603 786 dbSNP
rs1359114173 791 dbSNP
rs888621768 798 dbSNP
rs1306885038 802 dbSNP
rs1380062365 827 dbSNP
rs1399466899 842 dbSNP
rs1276559592 843 dbSNP
rs1320187998 846 dbSNP
rs183417575 849 dbSNP
rs1277600107 850 dbSNP
rs930241255 851 dbSNP
rs759380888 854 dbSNP
rs1309334095 858 dbSNP
rs1237985028 859 dbSNP
rs150625611 860 dbSNP
rs944118744 871 dbSNP
rs1264918089 878 dbSNP
rs911347210 894 dbSNP
rs562361581 895 dbSNP
rs1389560355 900 dbSNP
rs985950254 907 dbSNP
rs190910360 911 dbSNP
rs1413116868 912 dbSNP
rs1178940029 913 dbSNP
rs141838038 919 dbSNP
rs1032602891 922 dbSNP
rs1296375073 923 dbSNP
rs186357746 931 dbSNP
rs1158233585 932 dbSNP
rs561460659 941 dbSNP
rs1365314615 946 dbSNP
rs978011032 953 dbSNP
rs1279247070 960 dbSNP
rs1197346831 961 dbSNP
rs1213851030 963 dbSNP
rs1287597709 981 dbSNP
rs572983460 988 dbSNP
rs758203528 997 dbSNP
rs1244607581 1007 dbSNP
rs967051313 1010 dbSNP
rs1211905651 1011 dbSNP
rs1396244853 1015 dbSNP
rs542750905 1027 dbSNP
rs1260513062 1028 dbSNP
rs1362586165 1031 dbSNP
rs1013289946 1036 dbSNP
rs765991897 1037 dbSNP
rs762527042 1044 dbSNP
rs1438380275 1049 dbSNP
rs1275167088 1052 dbSNP
rs1375842752 1053 dbSNP
rs1237921319 1054 dbSNP
rs1311364953 1069 dbSNP
rs1229493300 1073 dbSNP
rs1331829447 1077 dbSNP
rs1282006467 1083 dbSNP
rs772975499 1090 dbSNP
rs1006398426 1092 dbSNP
rs1330054562 1100 dbSNP
rs1452935335 1103 dbSNP
rs1224269130 1108 dbSNP
rs1254074721 1109 dbSNP
rs1457576475 1112 dbSNP
rs1177393657 1114 dbSNP
rs1301478279 1115 dbSNP
rs1388181334 1116 dbSNP
rs1470563138 1117 dbSNP
rs753407202 1129 dbSNP
rs1173317008 1133 dbSNP
rs1382425598 1135 dbSNP
rs1407337909 1136 dbSNP
rs1319658871 1138 dbSNP
rs115146730 1166 dbSNP
rs1444290675 1174 dbSNP
rs181719227 1185 dbSNP
rs1336206138 1189 dbSNP
rs545786924 1203 dbSNP
rs769294026 1211 dbSNP
rs1357825107 1213 dbSNP
rs576863892 1218 dbSNP
rs148280103 1229 dbSNP
rs944002862 1233 dbSNP
rs1201193614 1234 dbSNP
rs533232709 1235 dbSNP
rs1240603129 1237 dbSNP
rs1261373969 1242 dbSNP
rs1049804660 1244 dbSNP
rs1466561737 1245 dbSNP
rs1261793023 1252 dbSNP
rs1165999228 1272 dbSNP
rs1203612150 1277 dbSNP
rs777102984 1282 dbSNP
rs1463870456 1290 dbSNP
rs925122097 1295 dbSNP
rs978357002 1296 dbSNP
rs143176686 1297 dbSNP
rs917877957 1298 dbSNP
rs567757406 1299 dbSNP
rs958999590 1307 dbSNP
rs1324306412 1317 dbSNP
rs1033365873 1319 dbSNP
rs1337877147 1323 dbSNP
rs769175685 1329 dbSNP
rs951919156 1330 dbSNP
rs1260445199 1337 dbSNP
rs1027147457 1343 dbSNP
rs1367153193 1354 dbSNP
rs1277103168 1356 dbSNP
rs549104614 1358 dbSNP
rs1334548327 1360 dbSNP
rs533600538 1362 dbSNP
rs897333993 1363 dbSNP
rs1402933794 1364 dbSNP
rs566132653 1367 dbSNP
rs1460592349 1372 dbSNP
rs1373473676 1373 dbSNP
rs1389748717 1389 dbSNP
rs1465358555 1391 dbSNP
rs1189509664 1392 dbSNP
rs1451667606 1397 dbSNP
rs1041246498 1398 dbSNP
rs1434806675 1398 dbSNP
rs774292502 1404 dbSNP
rs1183444399 1414 dbSNP
rs1401500974 1416 dbSNP
rs889760974 1419 dbSNP
rs1327447645 1422 dbSNP
rs1232917577 1424 dbSNP
rs1273582440 1429 dbSNP
rs1196457589 1437 dbSNP
rs1211714313 1441 dbSNP
rs550931136 1442 dbSNP
rs1483948332 1444 dbSNP
rs936754123 1444 dbSNP
rs1262684545 1453 dbSNP
rs1432402597 1463 dbSNP
rs1196402363 1467 dbSNP
rs1281420323 1475 dbSNP
rs11542206 1478 dbSNP
rs1454692405 1480 dbSNP
rs3209411 1483 dbSNP
rs1157940690 1484 dbSNP
rs925390432 1489 dbSNP
rs1420968436 1492 dbSNP
rs1289099718 1498 dbSNP
rs191552150 1499 dbSNP
rs1336922986 1505 dbSNP
rs1321932623 1522 dbSNP
rs1042218945 1542 dbSNP
rs1235724584 1548 dbSNP
rs562476507 1550 dbSNP
rs115066455 1553 dbSNP
rs1351678899 1554 dbSNP
rs1228707532 1572 dbSNP
rs1343986723 1585 dbSNP
rs917771388 1590 dbSNP
rs772275787 1593 dbSNP
rs959302467 1599 dbSNP
rs1336140551 1600 dbSNP
rs1389724527 1603 dbSNP
rs1269246245 1604 dbSNP
rs1468743311 1607 dbSNP
rs1177999320 1612 dbSNP
rs1378343423 1616 dbSNP
rs926298025 1619 dbSNP
rs746059715 1622 dbSNP
rs1370056561 1630 dbSNP
rs1159141185 1633 dbSNP
rs1367554169 1635 dbSNP
rs529131464 1650 dbSNP
rs984897975 1668 dbSNP
rs1294891385 1674 dbSNP
rs1397233043 1674 dbSNP
rs1431868438 1683 dbSNP
rs951826922 1686 dbSNP
rs1375247881 1694 dbSNP
rs142235491 1695 dbSNP
rs867445793 1707 dbSNP
rs1307738117 1712 dbSNP
rs1321160433 1714 dbSNP
rs1163023411 1722 dbSNP
rs993216848 1723 dbSNP
rs543112068 1734 dbSNP
rs370389766 1739 dbSNP
rs1473366898 1741 dbSNP
rs961495954 1743 dbSNP
rs1335247340 1744 dbSNP
rs1197704224 1745 dbSNP
rs1180349602 1749 dbSNP
rs80282187 1753 dbSNP
rs1008416064 1766 dbSNP
rs1177688946 1772 dbSNP
rs890064931 1781 dbSNP
rs138132059 1797 dbSNP
rs1001310606 1798 dbSNP
rs903854447 1799 dbSNP
rs1042829941 1807 dbSNP
rs1289232834 1807 dbSNP
rs1170367737 1808 dbSNP
rs72963555 1814 dbSNP
rs781238179 1828 dbSNP
rs11542207 1829 dbSNP
rs1236834544 1842 dbSNP
rs1295353030 1848 dbSNP
rs751312431 1849 dbSNP
rs556864804 1879 dbSNP
rs1217809795 1882 dbSNP
rs146970649 1891 dbSNP
rs1411806745 1898 dbSNP
rs1309007739 1906 dbSNP
rs1205215091 1915 dbSNP
rs926573020 1918 dbSNP
rs79207870 1931 dbSNP
rs758284671 1932 dbSNP
rs930272082 1935 dbSNP
rs555631750 1936 dbSNP
rs1191036550 1939 dbSNP
rs1406297663 1944 dbSNP
rs1416440781 1953 dbSNP
rs1417892620 1961 dbSNP
rs1411982970 1968 dbSNP
rs1171745220 1976 dbSNP
rs1359020627 1977 dbSNP
rs965790954 1986 dbSNP
rs1314772747 1987 dbSNP
rs1376121777 2000 dbSNP
rs1019727510 2002 dbSNP
rs141273429 2004 dbSNP
rs1413421960 2018 dbSNP
rs1363883920 2019 dbSNP
rs1214884399 2022 dbSNP
rs1300510387 2025 dbSNP
rs1310330032 2029 dbSNP
rs186759973 2037 dbSNP
rs555524059 2038 dbSNP
rs114799479 2039 dbSNP
rs1220406813 2043 dbSNP
rs1187430611 2046 dbSNP
rs1451931070 2055 dbSNP
rs1291771565 2061 dbSNP
rs1203253513 2066 dbSNP
rs1328371918 2069 dbSNP
rs1020979855 2085 dbSNP
rs763446705 2095 dbSNP
rs1395841092 2097 dbSNP
rs1419159411 2099 dbSNP
rs1009643721 2120 dbSNP
rs1343768286 2123 dbSNP
rs775721725 2128 dbSNP
rs1347118652 2131 dbSNP
rs1274435271 2138 dbSNP
rs1431247865 2147 dbSNP
rs896609317 2152 dbSNP
rs1056309046 2155 dbSNP
rs1236460530 2168 dbSNP
rs1304045764 2174 dbSNP
rs764921982 2174 dbSNP
rs1437494328 2178 dbSNP
rs905034100 2182 dbSNP
rs568755369 2185 dbSNP
rs1220344238 2187 dbSNP
rs1246531423 2190 dbSNP
rs1467412474 2194 dbSNP
rs1053196 2201 dbSNP
rs1196119513 2203 dbSNP
rs1316696233 2210 dbSNP
rs930594781 2211 dbSNP
rs1457107666 2214 dbSNP
rs1389981005 2215 dbSNP
rs1162059701 2216 dbSNP
rs918898945 2225 dbSNP
rs1392089967 2229 dbSNP
rs1326500873 2230 dbSNP
rs1350725307 2230 dbSNP
rs1376006180 2230 dbSNP
rs1442751545 2230 dbSNP
rs879210454 2230 dbSNP
rs1473261662 2232 dbSNP
rs1422488343 2236 dbSNP
rs1287287394 2237 dbSNP
rs1333167107 2240 dbSNP
rs1215873921 2244 dbSNP
rs933896099 2246 dbSNP
rs1478161134 2247 dbSNP
rs944451460 2267 dbSNP
rs911679668 2268 dbSNP
rs1248150608 2270 dbSNP
rs1470553517 2271 dbSNP
rs1186437010 2272 dbSNP
rs1181506191 2273 dbSNP
rs1464302117 2274 dbSNP
rs922628367 2275 dbSNP
rs1268660103 2277 dbSNP
rs1165314866 2279 dbSNP
rs1399244134 2285 dbSNP
rs376163037 2288 dbSNP
rs1330807185 2298 dbSNP
rs1335892829 2299 dbSNP
rs556704746 2301 dbSNP
rs1310476411 2310 dbSNP
rs954318529 2323 dbSNP
rs915321062 2325 dbSNP
rs989541223 2327 dbSNP
rs959825261 2328 dbSNP
rs1268682290 2329 dbSNP
rs769556704 2338 dbSNP
rs1275648341 2339 dbSNP
rs982391860 2347 dbSNP
rs550891334 2352 dbSNP
rs968359275 2356 dbSNP
rs761266859 2357 dbSNP
rs1024018232 2363 dbSNP
rs1476336703 2364 dbSNP
rs1188881989 2373 dbSNP
rs1422740377 2374 dbSNP
rs373138252 2382 dbSNP
rs1474296453 2384 dbSNP
rs529130593 2406 dbSNP
rs1434798293 2407 dbSNP
rs1397043986 2409 dbSNP
rs994245133 2410 dbSNP
rs1020961045 2414 dbSNP
rs1366405118 2416 dbSNP
rs1009612605 2429 dbSNP
rs961031235 2431 dbSNP
rs776148087 2438 dbSNP
rs1415065808 2440 dbSNP
rs764515395 2441 dbSNP
rs1017111453 2442 dbSNP
rs1326274433 2449 dbSNP
rs1035069100 2456 dbSNP
rs1468708074 2457 dbSNP
rs1356879363 2467 dbSNP
rs1002306586 2483 dbSNP
rs761096305 2485 dbSNP
rs1340612554 2487 dbSNP
rs1200360052 2488 dbSNP
rs568268860 2500 dbSNP
rs1211937616 2504 dbSNP
rs1005270464 2505 dbSNP
rs1414606656 2510 dbSNP
rs905002492 2512 dbSNP
rs1445071960 2520 dbSNP
rs1426790651 2523 dbSNP
rs1166378585 2526 dbSNP
rs1477686214 2532 dbSNP
rs546782823 2545 dbSNP
rs535320003 2550 dbSNP
rs1248445488 2552 dbSNP
rs1190359468 2559 dbSNP
rs1049531570 2561 dbSNP
rs1297202806 2569 dbSNP
rs1482242976 2572 dbSNP
rs1382268890 2581 dbSNP
rs181111483 2591 dbSNP
rs1380904261 2596 dbSNP
rs1236892246 2598 dbSNP
rs772320082 2608 dbSNP
rs901089019 2609 dbSNP
rs1301861480 2613 dbSNP
rs1350162267 2619 dbSNP
rs1235028420 2620 dbSNP
rs1260394597 2631 dbSNP
rs1348748497 2636 dbSNP
rs1207098956 2647 dbSNP
rs1272693046 2661 dbSNP
rs897775894 2668 dbSNP
rs1191736596 2672 dbSNP
rs1343238945 2673 dbSNP
rs1454355478 2677 dbSNP
rs1157473311 2689 dbSNP
rs1361534218 2696 dbSNP
rs1158780236 2698 dbSNP
rs61766152 2701 dbSNP
rs1440552399 2708 dbSNP
rs944335163 2716 dbSNP
rs1441766174 2721 dbSNP
rs911563896 2722 dbSNP
rs1379072235 2723 dbSNP
rs1042274999 2727 dbSNP
rs145512545 2738 dbSNP
rs1288197364 2746 dbSNP
rs1360407164 2750 dbSNP
rs1166287876 2751 dbSNP
rs931775323 2753 dbSNP
rs1428708843 2772 dbSNP
rs915222658 2774 dbSNP
rs76109623 2786 dbSNP
rs1050081324 2791 dbSNP
rs931672885 2793 dbSNP
rs1247885119 2800 dbSNP
rs1412951447 2801 dbSNP
rs1182089142 2804 dbSNP
rs1367472858 2805 dbSNP
rs1461269339 2806 dbSNP
rs938066888 2807 dbSNP
rs562700901 2812 dbSNP
rs979660645 2819 dbSNP
rs1182399786 2830 dbSNP
rs866008500 2840 dbSNP
rs1462472030 2844 dbSNP
rs926804497 2859 dbSNP
rs746236474 2872 dbSNP
rs1371361387 2874 dbSNP
rs1484254592 2879 dbSNP
rs1249725025 2881 dbSNP
rs189499341 2896 dbSNP
rs982276058 2899 dbSNP
rs1307989956 2912 dbSNP
rs1355021844 2920 dbSNP
rs1231656735 2923 dbSNP
rs968705421 2924 dbSNP
rs1204635129 2925 dbSNP
rs1203816291 2926 dbSNP
rs971004448 2930 dbSNP
rs914117134 2934 dbSNP
rs1481336471 2937 dbSNP
rs1195821663 2944 dbSNP
rs919511254 2945 dbSNP
rs149674422 2947 dbSNP
rs1420544940 2950 dbSNP
rs1475735799 2955 dbSNP
rs1170363435 2956 dbSNP
rs961345710 2958 dbSNP
rs771299177 2961 dbSNP
rs1321542855 2963 dbSNP
rs1374905919 2964 dbSNP
rs1413232489 2974 dbSNP
rs1355861063 2979 dbSNP
rs1002680186 2988 dbSNP
rs969527339 2993 dbSNP
rs555939897 3005 dbSNP
rs1230556640 3008 dbSNP
rs1027893746 3012 dbSNP
rs1279050951 3018 dbSNP
rs1484395955 3028 dbSNP
rs1016584668 3032 dbSNP
rs1305655455 3033 dbSNP
rs749316431 3035 dbSNP
rs879064086 3036 dbSNP
rs953794418 3038 dbSNP
rs1408749956 3039 dbSNP
rs778014332 3044 dbSNP
rs1370780503 3056 dbSNP
rs1169771510 3065 dbSNP
rs183510506 3066 dbSNP
rs897663758 3077 dbSNP
rs1376242240 3079 dbSNP
rs997981954 3084 dbSNP
rs1456154574 3086 dbSNP
rs573078989 3091 dbSNP
rs900974767 3097 dbSNP
rs1286941835 3108 dbSNP
rs776896611 3110 dbSNP
rs1302578203 3114 dbSNP
rs1008780616 3118 dbSNP
rs890095917 3119 dbSNP
rs1042716586 3122 dbSNP
rs1280623366 3126 dbSNP
rs1315914810 3139 dbSNP
rs1050128725 3141 dbSNP
rs1240782399 3143 dbSNP
rs1009458345 3144 dbSNP
rs893830627 3147 dbSNP
rs1053776698 3151 dbSNP
rs1472981115 3156 dbSNP
rs1452684633 3159 dbSNP
rs1254216589 3163 dbSNP
rs1425920794 3169 dbSNP
rs938117752 3189 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uacAUCCGGAA-AUCUAGUGAa 5'
             |:||: || ||||||||| 
Target 5' acuUGGGUAUUAUAGAUCACUu 3'
2 - 23
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000321792.5 | 3UTR | AACUUGGGUAUUAUAGAUCACUUUUCACUUUUUGGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC 0.512 0.12 0.000 0.5 7 Click to see details
BRCA 0.902 0.14 0.500 0.33 3 Click to see details
BLCA 0.764 0.22 1.000 0.5 3 Click to see details
UCEC 0.511 0.33 0.500 0.33 3 Click to see details
UCEC 0.511 0.33 0.500 0.33 3 Click to see details
UCEC 0.511 0.33 0.500 0.33 3 Click to see details
UCEC 0.511 0.33 0.500 0.33 3 Click to see details
UCEC 0.511 0.33 0.500 0.33 3 Click to see details
109 hsa-miR-1245a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT006574 BRCA2 BRCA2, DNA repair associated 2 1
MIRT055432 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT063879 RASSF8 Ras association domain family member 8 2 6
MIRT077025 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT095775 GRPEL2 GrpE like 2, mitochondrial 2 10
MIRT099172 MAP3K4 mitogen-activated protein kinase kinase kinase 4 2 2
MIRT175616 OCRL OCRL, inositol polyphosphate-5-phosphatase 2 2
MIRT456518 LYPLAL1 lysophospholipase like 1 2 2
MIRT464457 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT465747 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT468257 SFXN4 sideroflexin 4 2 2
MIRT469216 RICTOR RPTOR independent companion of MTOR complex 2 2 2
MIRT472045 NPAT nuclear protein, coactivator of histone transcription 2 2
MIRT481795 APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 2 2
MIRT500154 CREBBP CREB binding protein 2 2
MIRT506514 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 4
MIRT506915 KBTBD8 kelch repeat and BTB domain containing 8 2 6
MIRT513901 GRB10 growth factor receptor bound protein 10 2 6
MIRT519128 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT528121 FOXH1 forkhead box H1 2 2
MIRT528942 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT540580 CEP89 centrosomal protein 89 2 2
MIRT545858 ZNF264 zinc finger protein 264 2 4
MIRT547147 PGM3 phosphoglucomutase 3 2 2
MIRT547434 MED4 mediator complex subunit 4 2 2
MIRT554650 ROBO1 roundabout guidance receptor 1 2 2
MIRT558524 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT559762 ABHD5 abhydrolase domain containing 5 2 2
MIRT560438 GOLGA7B golgin A7 family member B 2 2
MIRT561974 LRRC59 leucine rich repeat containing 59 2 2
MIRT562442 DDIT4 DNA damage inducible transcript 4 2 2
MIRT563489 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT568265 BMP2K BMP2 inducible kinase 2 2
MIRT572522 KIAA0232 KIAA0232 2 2
MIRT612801 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT621533 ZNF507 zinc finger protein 507 2 2
MIRT625205 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT625615 ZNF84 zinc finger protein 84 2 2
MIRT629215 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629509 AS3MT arsenite methyltransferase 2 2
MIRT629769 STK25 serine/threonine kinase 25 2 2
MIRT630908 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT632508 RAB13 RAB13, member RAS oncogene family 2 2
MIRT636871 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT637106 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637332 FAM9B family with sequence similarity 9 member B 2 2
MIRT637553 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637639 ZNF431 zinc finger protein 431 2 2
MIRT637836 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT638326 RNF11 ring finger protein 11 2 2
MIRT638393 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT642450 CLUAP1 clusterin associated protein 1 2 2
MIRT642616 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT643133 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT644324 NFKBID NFKB inhibitor delta 2 2
MIRT645150 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 2
MIRT645673 ADK adenosine kinase 2 2
MIRT646091 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT646858 SLC35E4 solute carrier family 35 member E4 2 2
MIRT650153 ZNF426 zinc finger protein 426 2 2
MIRT652483 TMEM181 transmembrane protein 181 2 2
MIRT653790 SIRPA signal regulatory protein alpha 2 2
MIRT655526 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT657077 JPH2 junctophilin 2 2 2
MIRT657322 HOOK3 hook microtubule tethering protein 3 2 2
MIRT662036 FUT2 fucosyltransferase 2 2 2
MIRT662322 ADM2 adrenomedullin 2 2 2
MIRT663211 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663559 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663937 ZNF554 zinc finger protein 554 2 2
MIRT664689 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT664709 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT665291 ZFP14 ZFP14 zinc finger protein 2 2
MIRT665572 TXNL1 thioredoxin like 1 2 2
MIRT667068 PAOX polyamine oxidase 2 2
MIRT667304 MYO5A myosin VA 2 2
MIRT667442 METTL14 methyltransferase like 14 2 2
MIRT668048 GTPBP10 GTP binding protein 10 2 2
MIRT669604 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT671088 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT674361 SLC35E3 solute carrier family 35 member E3 2 2
MIRT674962 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT676394 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676819 AGMAT agmatinase 2 2
MIRT676891 ENSA endosulfine alpha 2 2
MIRT677059 ZNF34 zinc finger protein 34 2 2
MIRT678424 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678735 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT678930 XPOT exportin for tRNA 2 2
MIRT678954 MYADM myeloid associated differentiation marker 2 2
MIRT679228 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679765 TLR6 toll like receptor 6 2 2
MIRT681992 HRH4 histamine receptor H4 2 2
MIRT687405 NSUN4 NOP2/Sun RNA methyltransferase family member 4 2 2
MIRT694570 RBMXL1 RNA binding motif protein, X-linked like 1 2 2
MIRT698449 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT706406 HAS2 hyaluronan synthase 2 2 2
MIRT706582 ZNF432 zinc finger protein 432 2 2
MIRT706838 VHLL VHL like 2 2
MIRT706909 DVL3 dishevelled segment polarity protein 3 2 2
MIRT707052 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT708583 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT708988 CABP4 calcium binding protein 4 2 2
MIRT713041 ADRA2B adrenoceptor alpha 2B 2 2
MIRT713731 SUCO SUN domain containing ossification factor 2 2
MIRT714968 RAB21 RAB21, member RAS oncogene family 2 2
MIRT717485 PDE4DIP phosphodiesterase 4D interacting protein 2 2
MIRT722826 KLK2 kallikrein related peptidase 2 2 2
MIRT723305 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1245a Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (M14) (500nM)
hsa-miR-1245a Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (M14) (500nM)
hsa-miR-1245a Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (M14) (1uM)
hsa-miR-1245a Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (M14) (1uM)
hsa-miR-1245a Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-1245a Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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