miRTarBase - #MIRT694625


—
pre-miRNA Information
pre-miRNA hsa-mir-500b   
Genomic Coordinates chrX: 50010672 - 50010750
Description Homo sapiens miR-500b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-500b-3p
Sequence 51| GCACCCAGGCAAGGAUUCUG |70
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs782140253 8 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZFPM1   
Synonyms FOG, FOG1, ZC2HC11A, ZNF408, ZNF89A
Description zinc finger protein, FOG family member 1
Transcript NM_153813   
Expression
Putative miRNA Targets on ZFPM1
3'UTR of ZFPM1
(miRNA target sites are highlighted)		 
>ZFPM1|NM_153813|3'UTR
   1 GCGCCCACACTACAGCCGCAGACGCTTTGCACGCCCCGCTGCGATGCGGGGAGGGGGCCGCCCCCAGGCCGCACGGACTG
  81 CCGCTCCTGGGAACCCCGCCACGCACAGGCCTCGGCGGAGGGGGCCGCAGGGGGCAGCGCCCGCCTGGACCCTTGGCACT
 161 TAATAAAGAAGTTCAGTTTGATGAGCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guCUUA-GGAACGGACCCacg 5'
            || | ||   ||||||   
Target 5' cgGACTGCCGCTCCTGGGaac 3'
 74 - 94 110.00 -15.82
2 
miRNA  3' gucuuaggaaCGGACCcacg 5'
                    ||||||    
Target 5' ggcagcgcccGCCTGGaccc 3'
 133 - 152 90.00 -14.70
3 
miRNA  3' gucuuaggaaCGGACCCACg 5'
                    |||| || | 
Target 5' ccacgcacagGCCTCGGCGg 3'
 99 - 118 86.00 -10.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31535755 2 COSMIC
COSN13696007 16 COSMIC
COSN30492827 24 COSMIC
COSN27005699 39 COSMIC
COSN30175004 44 COSMIC
COSN18739739 95 COSMIC
COSN30507473 104 COSMIC
COSN27005700 116 COSMIC
COSN28862506 127 COSMIC
COSN17004452 460 COSMIC
COSN26848012 542 COSMIC
COSN16925780 709 COSMIC
COSN16334972 711 COSMIC
COSN16501514 1411 COSMIC
COSN19320936 1635 COSMIC
COSN1712431 1722 COSMIC
COSN6097997 1909 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs756334302 5 dbSNP
rs780293618 7 dbSNP
rs1000613474 8 dbSNP
rs749437575 9 dbSNP
rs1211409036 10 dbSNP
rs1334671247 11 dbSNP
rs778948192 15 dbSNP
rs1279226399 17 dbSNP
rs1341533295 19 dbSNP
rs771738228 20 dbSNP
rs905722133 20 dbSNP
rs747988927 21 dbSNP
rs1468818412 22 dbSNP
rs771934659 23 dbSNP
rs1264917949 24 dbSNP
rs1432444316 25 dbSNP
rs1469008840 33 dbSNP
rs772816087 35 dbSNP
rs770631568 36 dbSNP
rs374392709 37 dbSNP
rs1426046525 38 dbSNP
rs759089962 43 dbSNP
rs1394599898 44 dbSNP
rs1461107298 45 dbSNP
rs371463878 48 dbSNP
rs752126280 49 dbSNP
rs775049088 49 dbSNP
rs980093423 51 dbSNP
rs1463280997 52 dbSNP
rs762225094 53 dbSNP
rs927281642 54 dbSNP
rs1371295005 55 dbSNP
rs1192336530 58 dbSNP
rs962801152 62 dbSNP
rs1247842838 72 dbSNP
rs962467648 74 dbSNP
rs1420300787 75 dbSNP
rs538607045 76 dbSNP
rs1061797 81 dbSNP
rs568953589 83 dbSNP
rs955056553 85 dbSNP
rs918425290 88 dbSNP
rs1274361399 91 dbSNP
rs1373360964 92 dbSNP
rs2279777 95 dbSNP
rs1051473691 96 dbSNP
rs1466719121 97 dbSNP
rs1297787469 98 dbSNP
rs912509257 102 dbSNP
rs555272033 104 dbSNP
rs1393155124 114 dbSNP
rs1309892269 115 dbSNP
rs1039422101 116 dbSNP
rs1370153654 118 dbSNP
rs573487849 127 dbSNP
rs541237102 132 dbSNP
rs370048682 142 dbSNP
rs1233130725 143 dbSNP
rs1231886844 144 dbSNP
rs1001026657 145 dbSNP
rs1282157254 148 dbSNP
rs1348273748 151 dbSNP
rs763831335 157 dbSNP
rs1250243622 158 dbSNP
rs140552335 160 dbSNP
rs547007304 164 dbSNP
rs1481328963 165 dbSNP
rs1350691584 166 dbSNP
rs925435164 173 dbSNP
rs62049008 177 dbSNP
rs917922536 184 dbSNP
rs891970715 186 dbSNP
rs1333828595 191 dbSNP
rs1192201340 195 dbSNP
rs1415104463 197 dbSNP
rs1010380442 199 dbSNP
rs1024409906 200 dbSNP
rs1433604274 202 dbSNP
rs1408044129 203 dbSNP
rs971648505 210 dbSNP
rs1468278986 218 dbSNP
rs1001397424 220 dbSNP
rs1189112662 228 dbSNP
rs1486832320 230 dbSNP
rs1352913522 231 dbSNP
rs1038204160 234 dbSNP
rs898312460 237 dbSNP
rs1447708700 241 dbSNP
rs1286420889 245 dbSNP
rs534487965 252 dbSNP
rs768442962 258 dbSNP
rs1332114083 262 dbSNP
rs182098691 264 dbSNP
rs565312936 265 dbSNP
rs563291962 275 dbSNP
rs1368055828 276 dbSNP
rs1357093755 278 dbSNP
rs1007858843 279 dbSNP
rs1213705586 280 dbSNP
rs530547761 281 dbSNP
rs747847739 287 dbSNP
rs962646030 288 dbSNP
rs868713633 291 dbSNP
rs1018546147 292 dbSNP
rs1398393910 297 dbSNP
rs1383820027 299 dbSNP
rs974578663 300 dbSNP
rs918657118 308 dbSNP
rs1476416088 312 dbSNP
rs113526506 314 dbSNP
rs979678350 316 dbSNP
rs772021109 318 dbSNP
rs1476028008 325 dbSNP
rs144410295 332 dbSNP
rs1446459545 336 dbSNP
rs988649566 339 dbSNP
rs912393089 340 dbSNP
rs942633092 341 dbSNP
rs949419700 346 dbSNP
rs1489014546 348 dbSNP
rs1227464233 349 dbSNP
rs1362589636 350 dbSNP
rs1271811408 351 dbSNP
rs528667201 355 dbSNP
rs1326233532 356 dbSNP
rs926621219 358 dbSNP
rs1417711686 362 dbSNP
rs192244321 363 dbSNP
rs1171600471 369 dbSNP
rs34345623 373 dbSNP
rs1417275192 375 dbSNP
rs923541568 377 dbSNP
rs1410830109 379 dbSNP
rs1459887274 382 dbSNP
rs1422308768 384 dbSNP
rs1185256005 391 dbSNP
rs565190612 393 dbSNP
rs1052630351 399 dbSNP
rs1255749611 400 dbSNP
rs1350390056 401 dbSNP
rs1429834303 404 dbSNP
rs1220586272 407 dbSNP
rs993993348 408 dbSNP
rs764842003 409 dbSNP
rs1013738317 410 dbSNP
rs1007973228 417 dbSNP
rs1442389183 417 dbSNP
rs369467409 419 dbSNP
rs1292538438 421 dbSNP
rs1218898014 422 dbSNP
rs1169026530 423 dbSNP
rs1409890570 430 dbSNP
rs1017994454 435 dbSNP
rs750279703 436 dbSNP
rs1175614104 443 dbSNP
rs1292241720 444 dbSNP
rs899481878 447 dbSNP
rs564099563 449 dbSNP
rs1032570822 451 dbSNP
rs550844767 452 dbSNP
rs988291599 454 dbSNP
rs1482693616 455 dbSNP
rs147682388 457 dbSNP
rs963052431 459 dbSNP
rs1215586152 460 dbSNP
rs995546579 466 dbSNP
rs1223979198 467 dbSNP
rs1240690687 469 dbSNP
rs1376067914 473 dbSNP
rs1296813090 474 dbSNP
rs1409535992 480 dbSNP
rs539191185 491 dbSNP
rs1315310632 493 dbSNP
rs76013744 494 dbSNP
rs548831585 501 dbSNP
rs1160187231 502 dbSNP
rs1256996324 505 dbSNP
rs1421107671 506 dbSNP
rs986880148 512 dbSNP
rs1405984934 514 dbSNP
rs373888094 516 dbSNP
rs1019463127 518 dbSNP
rs567246513 520 dbSNP
rs1472117457 521 dbSNP
rs11640478 523 dbSNP
rs1167171946 527 dbSNP
rs376822726 530 dbSNP
rs1212904186 532 dbSNP
rs552783191 533 dbSNP
rs1400008069 539 dbSNP
rs1156793765 541 dbSNP
rs1215799173 542 dbSNP
rs919816706 543 dbSNP
rs1346770761 544 dbSNP
rs1228199705 546 dbSNP
rs1295445467 546 dbSNP
rs925166929 547 dbSNP
rs758370466 548 dbSNP
rs890953281 550 dbSNP
rs760419445 552 dbSNP
rs1455588080 556 dbSNP
rs1311904339 562 dbSNP
rs943794000 562 dbSNP
rs1158564739 569 dbSNP
rs1039443492 572 dbSNP
rs572491662 573 dbSNP
rs1418506980 579 dbSNP
rs899516778 579 dbSNP
rs987853694 580 dbSNP
rs542799891 581 dbSNP
rs1255284910 584 dbSNP
rs1486665018 585 dbSNP
rs534471888 586 dbSNP
rs1207578223 590 dbSNP
rs913548480 591 dbSNP
rs35456206 592 dbSNP
rs1340230342 593 dbSNP
rs1046091039 595 dbSNP
rs551445927 602 dbSNP
rs1357724933 605 dbSNP
rs115428733 610 dbSNP
rs1384100322 614 dbSNP
rs1360164347 616 dbSNP
rs1319907936 617 dbSNP
rs1193886521 621 dbSNP
rs937488814 622 dbSNP
rs1396869683 625 dbSNP
rs1166992392 630 dbSNP
rs1055872441 632 dbSNP
rs577807035 633 dbSNP
rs1170918907 637 dbSNP
rs1429874354 638 dbSNP
rs1217802516 642 dbSNP
rs898779821 643 dbSNP
rs996155558 644 dbSNP
rs371036564 654 dbSNP
rs980836879 655 dbSNP
rs1468533463 661 dbSNP
rs770767738 664 dbSNP
rs1025682952 668 dbSNP
rs139790282 669 dbSNP
rs1238151962 670 dbSNP
rs754828383 673 dbSNP
rs557126314 675 dbSNP
rs973397418 682 dbSNP
rs1409993155 686 dbSNP
rs1019682461 691 dbSNP
rs1324015203 692 dbSNP
rs537653308 693 dbSNP
rs1389950276 694 dbSNP
rs1168223536 696 dbSNP
rs975266382 698 dbSNP
rs1032576595 699 dbSNP
rs1373290446 702 dbSNP
rs929948779 711 dbSNP
rs1436164442 712 dbSNP
rs983087971 713 dbSNP
rs1334673851 715 dbSNP
rs912427104 721 dbSNP
rs1196164352 722 dbSNP
rs943828505 723 dbSNP
rs1251876606 724 dbSNP
rs575274697 724 dbSNP
rs1278363662 725 dbSNP
rs1039473239 726 dbSNP
rs1274433600 731 dbSNP
rs76098730 732 dbSNP
rs1350362035 736 dbSNP
rs988459030 737 dbSNP
rs913568759 739 dbSNP
rs1346117475 741 dbSNP
rs561516046 747 dbSNP
rs949020528 749 dbSNP
rs748446159 753 dbSNP
rs573585003 754 dbSNP
rs1393122014 756 dbSNP
rs1368441225 757 dbSNP
rs1307220969 759 dbSNP
rs111697273 765 dbSNP
rs1002290705 771 dbSNP
rs937750925 773 dbSNP
rs1477407235 786 dbSNP
rs565474209 787 dbSNP
rs1055924913 788 dbSNP
rs898657028 790 dbSNP
rs372883452 792 dbSNP
rs1212073317 795 dbSNP
rs1172804119 800 dbSNP
rs1395315260 808 dbSNP
rs1407772006 811 dbSNP
rs149764124 812 dbSNP
rs1351474103 815 dbSNP
rs145723227 817 dbSNP
rs1008207257 818 dbSNP
rs1415178612 825 dbSNP
rs1041047891 830 dbSNP
rs899946509 834 dbSNP
rs1331778241 838 dbSNP
rs965215412 840 dbSNP
rs996926135 848 dbSNP
rs879632513 849 dbSNP
rs958070094 857 dbSNP
rs777927904 858 dbSNP
rs1456065239 861 dbSNP
rs1235801789 864 dbSNP
rs1411891562 870 dbSNP
rs749696940 877 dbSNP
rs936426887 878 dbSNP
rs1021260739 879 dbSNP
rs35253951 880 dbSNP
rs913579949 887 dbSNP
rs1286375771 888 dbSNP
rs530010079 895 dbSNP
rs926286034 898 dbSNP
rs535307409 899 dbSNP
rs1233886943 900 dbSNP
rs1381044816 901 dbSNP
rs779628261 903 dbSNP
rs1446781856 904 dbSNP
rs753274656 907 dbSNP
rs1326680343 911 dbSNP
rs763189876 914 dbSNP
rs764449962 915 dbSNP
rs58247410 917 dbSNP
rs796421692 917 dbSNP
rs973522368 927 dbSNP
rs920114706 929 dbSNP
rs1199285992 930 dbSNP
rs772614007 932 dbSNP
rs1412030321 935 dbSNP
rs578059330 937 dbSNP
rs908809583 938 dbSNP
rs1475833398 940 dbSNP
rs1244067231 941 dbSNP
rs944257273 947 dbSNP
rs1041099926 951 dbSNP
rs370148486 954 dbSNP
rs1253760844 955 dbSNP
rs899830858 957 dbSNP
rs1172317849 961 dbSNP
rs534913889 962 dbSNP
rs1287408663 964 dbSNP
rs996934245 965 dbSNP
rs1054243925 968 dbSNP
rs1299354612 971 dbSNP
rs893652662 975 dbSNP
rs1009840502 976 dbSNP
rs1020775261 978 dbSNP
rs970655178 979 dbSNP
rs545213082 980 dbSNP
rs1410877714 989 dbSNP
rs1422171273 991 dbSNP
rs1166925842 1002 dbSNP
rs1388951557 1004 dbSNP
rs1018948746 1007 dbSNP
rs546605880 1009 dbSNP
rs1195604201 1010 dbSNP
rs1324593480 1010 dbSNP
rs1033310204 1011 dbSNP
rs1244914351 1012 dbSNP
rs965327618 1014 dbSNP
rs975307245 1017 dbSNP
rs1276565838 1020 dbSNP
rs1225687662 1025 dbSNP
rs1303432687 1036 dbSNP
rs1220461903 1037 dbSNP
rs958997593 1042 dbSNP
rs1274765685 1044 dbSNP
rs1364964307 1044 dbSNP
rs921126367 1046 dbSNP
rs769129546 1047 dbSNP
rs920316643 1049 dbSNP
rs989264804 1050 dbSNP
rs950477173 1058 dbSNP
rs571403362 1065 dbSNP
rs1318699083 1066 dbSNP
rs908702274 1067 dbSNP
rs944311047 1068 dbSNP
rs1041276449 1069 dbSNP
rs1470493587 1071 dbSNP
rs1253650159 1072 dbSNP
rs1202785607 1073 dbSNP
rs1271258058 1076 dbSNP
rs1280598200 1084 dbSNP
rs11076643 1085 dbSNP
rs1309914753 1086 dbSNP
rs1277352354 1087 dbSNP
rs1224789212 1093 dbSNP
rs11076644 1098 dbSNP
rs1260809978 1104 dbSNP
rs1053892406 1109 dbSNP
rs1304794520 1118 dbSNP
rs568241525 1125 dbSNP
rs1445014670 1131 dbSNP
rs938290864 1132 dbSNP
rs893912663 1133 dbSNP
rs1159962733 1135 dbSNP
rs1457654096 1137 dbSNP
rs1055290922 1138 dbSNP
rs899353977 1140 dbSNP
rs945474866 1142 dbSNP
rs1042656631 1143 dbSNP
rs1258026637 1148 dbSNP
rs906339867 1151 dbSNP
rs1003423129 1153 dbSNP
rs1183209557 1154 dbSNP
rs766293922 1160 dbSNP
rs1162159853 1161 dbSNP
rs1215901156 1174 dbSNP
rs1331753995 1175 dbSNP
rs1266775407 1180 dbSNP
rs1047815259 1183 dbSNP
rs1335880722 1186 dbSNP
rs1459871003 1188 dbSNP
rs575412851 1189 dbSNP
rs797021941 1190 dbSNP
rs1394466770 1195 dbSNP
rs1164303765 1196 dbSNP
rs751549429 1197 dbSNP
rs886556390 1198 dbSNP
rs11076646 1200 dbSNP
rs1018977650 1202 dbSNP
rs1368789848 1205 dbSNP
rs561444728 1210 dbSNP
rs1027307857 1216 dbSNP
rs114170574 1220 dbSNP
rs1414296193 1222 dbSNP
rs1255055360 1225 dbSNP
rs1186811463 1226 dbSNP
rs540902556 1227 dbSNP
rs996777647 1228 dbSNP
rs767335145 1229 dbSNP
rs957900665 1230 dbSNP
rs1208617424 1234 dbSNP
rs1015772850 1238 dbSNP
rs1245453048 1254 dbSNP
rs756240482 1255 dbSNP
rs977013744 1256 dbSNP
rs1218517138 1258 dbSNP
rs565477009 1260 dbSNP
rs921490943 1261 dbSNP
rs577335835 1262 dbSNP
rs752808438 1265 dbSNP
rs1363085653 1267 dbSNP
rs1320015001 1270 dbSNP
rs989923592 1270 dbSNP
rs927662506 1274 dbSNP
rs915245404 1276 dbSNP
rs561331884 1278 dbSNP
rs945458572 1284 dbSNP
rs1456194720 1285 dbSNP
rs1485130002 1287 dbSNP
rs149002890 1292 dbSNP
rs1257697852 1295 dbSNP
rs756369334 1296 dbSNP
rs1188870578 1300 dbSNP
rs1450986565 1306 dbSNP
rs1271267783 1309 dbSNP
rs1387738825 1310 dbSNP
rs939166554 1316 dbSNP
rs1054867883 1318 dbSNP
rs561514302 1319 dbSNP
rs920809191 1323 dbSNP
rs1208643693 1324 dbSNP
rs1488348195 1327 dbSNP
rs930900607 1330 dbSNP
rs1207517128 1333 dbSNP
rs1361456122 1335 dbSNP
rs994755239 1337 dbSNP
rs1048400107 1338 dbSNP
rs1301262538 1346 dbSNP
rs1027770591 1347 dbSNP
rs886064019 1351 dbSNP
rs1005047345 1353 dbSNP
rs72807441 1355 dbSNP
rs965553085 1356 dbSNP
rs976940509 1357 dbSNP
rs183570145 1361 dbSNP
rs1197336433 1364 dbSNP
rs996141210 1365 dbSNP
rs1252934917 1366 dbSNP
rs1306287547 1368 dbSNP
rs1184804282 1370 dbSNP
rs1482158902 1377 dbSNP
rs757467773 1378 dbSNP
rs1201304146 1379 dbSNP
rs1242121291 1384 dbSNP
rs989709833 1384 dbSNP
rs560092819 1387 dbSNP
rs1288681083 1388 dbSNP
rs188562866 1390 dbSNP
rs1348468395 1393 dbSNP
rs1010823931 1396 dbSNP
rs746417493 1398 dbSNP
rs1021231202 1403 dbSNP
rs1465929399 1405 dbSNP
rs928077944 1406 dbSNP
rs939426761 1408 dbSNP
rs540909591 1411 dbSNP
rs1251608616 1413 dbSNP
rs1188466109 1416 dbSNP
rs571470813 1420 dbSNP
rs145916951 1429 dbSNP
rs930556676 1433 dbSNP
rs1199952313 1434 dbSNP
rs550801424 1435 dbSNP
rs1268683738 1444 dbSNP
rs1438349121 1446 dbSNP
rs886117697 1447 dbSNP
rs1326782006 1461 dbSNP
rs920270245 1466 dbSNP
rs1004526738 1468 dbSNP
rs191956306 1469 dbSNP
rs901629333 1471 dbSNP
rs995924899 1475 dbSNP
rs1028499529 1476 dbSNP
rs536352277 1477 dbSNP
rs1297659996 1478 dbSNP
rs747690065 1480 dbSNP
rs954205447 1483 dbSNP
rs866240705 1485 dbSNP
rs932048124 1486 dbSNP
rs72807442 1496 dbSNP
rs893121345 1502 dbSNP
rs1022523831 1504 dbSNP
rs1369999722 1505 dbSNP
rs1217199182 1509 dbSNP
rs1250027314 1510 dbSNP
rs1303028022 1510 dbSNP
rs1011269069 1512 dbSNP
rs1042278669 1513 dbSNP
rs1312385879 1513 dbSNP
rs1228678133 1516 dbSNP
rs1358287110 1520 dbSNP
rs1226105125 1523 dbSNP
rs11643899 1524 dbSNP
rs533571242 1525 dbSNP
rs1003292340 1527 dbSNP
rs1034806998 1529 dbSNP
rs959153452 1531 dbSNP
rs1324539699 1532 dbSNP
rs569741013 1533 dbSNP
rs762430463 1541 dbSNP
rs1162865297 1544 dbSNP
rs927959987 1545 dbSNP
rs1189830137 1547 dbSNP
rs1392050962 1549 dbSNP
rs960816117 1550 dbSNP
rs1186774995 1557 dbSNP
rs1447515937 1565 dbSNP
rs1241443286 1566 dbSNP
rs990823310 1567 dbSNP
rs1427589194 1576 dbSNP
rs1433953662 1577 dbSNP
rs1169962274 1579 dbSNP
rs1287518836 1580 dbSNP
rs182570100 1587 dbSNP
rs930464182 1590 dbSNP
rs375671290 1597 dbSNP
rs770472045 1598 dbSNP
rs1360742081 1603 dbSNP
rs908077986 1605 dbSNP
rs896433866 1606 dbSNP
rs907808965 1607 dbSNP
rs1434088156 1614 dbSNP
rs577473177 1622 dbSNP
rs1372653601 1623 dbSNP
rs1040104086 1625 dbSNP
rs901470686 1626 dbSNP
rs995934743 1627 dbSNP
rs774236899 1629 dbSNP
rs932080666 1632 dbSNP
rs1478984551 1634 dbSNP
rs1319392976 1637 dbSNP
rs1198435469 1638 dbSNP
rs1218703584 1640 dbSNP
rs1276324134 1641 dbSNP
rs1054532276 1642 dbSNP
rs759488423 1644 dbSNP
rs72807444 1645 dbSNP
rs752538784 1657 dbSNP
rs966968586 1658 dbSNP
rs999729244 1663 dbSNP
rs1034985174 1664 dbSNP
rs1248851317 1665 dbSNP
rs1488985795 1666 dbSNP
rs1441807123 1667 dbSNP
rs1359774585 1670 dbSNP
rs1186163828 1672 dbSNP
rs1178349024 1674 dbSNP
rs1261222028 1683 dbSNP
rs1416041394 1685 dbSNP
rs1478883797 1685 dbSNP
rs1422978677 1691 dbSNP
rs960658539 1702 dbSNP
rs1042701579 1703 dbSNP
rs556330224 1704 dbSNP
rs990874310 1706 dbSNP
rs1472785927 1707 dbSNP
rs916646042 1708 dbSNP
rs1253765227 1713 dbSNP
rs1179527310 1714 dbSNP
rs902472021 1716 dbSNP
rs574719711 1717 dbSNP
rs541904423 1720 dbSNP
rs1211626473 1725 dbSNP
rs115230601 1726 dbSNP
rs907691482 1727 dbSNP
rs527656800 1730 dbSNP
rs1166763724 1731 dbSNP
rs1286882217 1732 dbSNP
rs1012420545 1735 dbSNP
rs1027380768 1736 dbSNP
rs975962971 1737 dbSNP
rs922945984 1739 dbSNP
rs1405509146 1742 dbSNP
rs1457739808 1744 dbSNP
rs1413849003 1750 dbSNP
rs931615993 1754 dbSNP
rs1418085071 1758 dbSNP
rs1414066807 1759 dbSNP
rs1050498202 1762 dbSNP
rs146605964 1763 dbSNP
rs976315103 1766 dbSNP
rs1029196667 1767 dbSNP
rs1266560801 1772 dbSNP
rs953497879 1781 dbSNP
rs947119177 1783 dbSNP
rs1043937758 1784 dbSNP
rs1226869099 1792 dbSNP
rs868414518 1799 dbSNP
rs1382085616 1800 dbSNP
rs565144211 1802 dbSNP
rs1376295439 1807 dbSNP
rs1435654155 1811 dbSNP
rs1390755136 1813 dbSNP
rs186843827 1815 dbSNP
rs1452771675 1816 dbSNP
rs999737726 1817 dbSNP
rs946048374 1818 dbSNP
rs1166438111 1821 dbSNP
rs1035203584 1831 dbSNP
rs896509240 1832 dbSNP
rs1012272585 1835 dbSNP
rs1024043161 1842 dbSNP
rs59857958 1846 dbSNP
rs748368461 1846 dbSNP
rs952195453 1848 dbSNP
rs567839328 1849 dbSNP
rs1014769395 1853 dbSNP
rs961845649 1857 dbSNP
rs550937835 1861 dbSNP
rs535374263 1862 dbSNP
rs895000839 1864 dbSNP
rs569053268 1866 dbSNP
rs1363189088 1867 dbSNP
rs1293324153 1868 dbSNP
rs1049292947 1869 dbSNP
rs1489374787 1875 dbSNP
rs1367996495 1877 dbSNP
rs1422304015 1885 dbSNP
rs1194604299 1894 dbSNP
rs1364574632 1896 dbSNP
rs976015201 1905 dbSNP
rs754160914 1906 dbSNP
rs1005037570 1908 dbSNP
rs1193063039 1911 dbSNP
rs1471815894 1912 dbSNP
rs931874813 1913 dbSNP
rs1490308294 1916 dbSNP
rs1275605161 1917 dbSNP
rs1207621230 1918 dbSNP
rs866352890 1921 dbSNP
rs1340107433 1923 dbSNP
rs1250863944 1924 dbSNP
rs985850300 1928 dbSNP
rs866803030 1942 dbSNP
rs1303047455 1945 dbSNP
rs1418341712 1949 dbSNP
rs3812947 1950 dbSNP
rs1362111531 1953 dbSNP
rs1029227712 1954 dbSNP
rs953531053 1957 dbSNP
rs1041822956 1958 dbSNP
rs1379878451 1964 dbSNP
rs990301911 1965 dbSNP
rs1449505990 1971 dbSNP
rs1480302275 1971 dbSNP
rs115401835 1975 dbSNP
rs566468425 1979 dbSNP
rs1249838261 1983 dbSNP
rs1239925210 1984 dbSNP
rs576325444 1985 dbSNP
rs191474180 1989 dbSNP
rs1217635312 1991 dbSNP
rs1288783593 1994 dbSNP
rs1056539060 1996 dbSNP
rs1333632460 2003 dbSNP
rs141325519 2003 dbSNP
rs928650192 2007 dbSNP
rs1396095543 2009 dbSNP
rs35210117 2011 dbSNP
rs184439981 2012 dbSNP
rs916463878 2015 dbSNP
rs1413104220 2023 dbSNP
rs574658126 2025 dbSNP
rs1161845532 2026 dbSNP
rs542039188 2034 dbSNP
rs145114731 2039 dbSNP
rs1363431218 2040 dbSNP
rs1381965342 2042 dbSNP
rs1048927808 2043 dbSNP
rs1185400375 2047 dbSNP
rs1241399458 2050 dbSNP
rs1201646090 2051 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gucuuaggaacgGACCCACg 5'
                      ||||||| 
Target 5' --aguuacaccaCUGGGUGc 3'
 		1 - 18
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000319555.3 | 3UTR | AGUUACACCACUGGGUGCUAAGAGCUAGACCGAGCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
172 hsa-miR-500b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059905 HDGF heparin binding growth factor 2 4
MIRT235394 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 4
MIRT442246 PYGO1 pygopus family PHD finger 1 2 2
MIRT443591 ZNF439 zinc finger protein 439 2 4
MIRT453280 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT463540 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT465589 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT469462 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT485449 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT486682 WDR81 WD repeat domain 81 2 2
MIRT489078 POLM DNA polymerase mu 2 2
MIRT493734 GREM2 gremlin 2, DAN family BMP antagonist 2 2
MIRT494872 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT496130 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT496489 CHMP3 charged multivesicular body protein 3 2 2
MIRT496924 CLMN calmin 2 2
MIRT497297 TMEM119 transmembrane protein 119 2 2
MIRT499103 AGRN agrin 2 2
MIRT508979 CXorf38 chromosome X open reading frame 38 2 2
MIRT509911 NIPAL1 NIPA like domain containing 1 2 2
MIRT512820 ARRDC2 arrestin domain containing 2 2 4
MIRT512827 KBTBD6 kelch repeat and BTB domain containing 6 2 4
MIRT515360 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT516610 TRIM58 tripartite motif containing 58 2 2
MIRT517053 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT517637 ZNF491 zinc finger protein 491 2 2
MIRT518270 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT518625 STAR steroidogenic acute regulatory protein 2 2
MIRT518887 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT519026 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT520365 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT521106 SLC1A5 solute carrier family 1 member 5 2 2
MIRT521943 PHC3 polyhomeotic homolog 3 2 2
MIRT522253 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT522853 KIAA1551 KIAA1551 2 2
MIRT522868 KIAA1549 KIAA1549 2 2
MIRT524207 DDX19B DEAD-box helicase 19B 2 2
MIRT526004 ARHGAP27 Rho GTPase activating protein 27 2 2
MIRT527769 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT527827 TMEM74B transmembrane protein 74B 2 2
MIRT527861 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT528040 WT1 Wilms tumor 1 2 2
MIRT529802 ZDHHC8 zinc finger DHHC-type containing 8 2 2
MIRT531723 TARS threonyl-tRNA synthetase 2 2
MIRT531996 BARD1 BRCA1 associated RING domain 1 2 2
MIRT533338 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT533621 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT533652 TMOD2 tropomodulin 2 2 2
MIRT534397 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 2 2
MIRT538686 CCDC80 coiled-coil domain containing 80 2 2
MIRT540444 RBM43 RNA binding motif protein 43 2 2
MIRT542586 ZC3H12C zinc finger CCCH-type containing 12C 2 8
MIRT542796 PLEKHA3 pleckstrin homology domain containing A3 2 4
MIRT542991 ERC1 ELKS/RAB6-interacting/CAST family member 1 2 2
MIRT544424 ZNF460 zinc finger protein 460 2 4
MIRT545740 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 4
MIRT552618 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT554456 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT569663 PRIM1 DNA primase subunit 1 2 2
MIRT569924 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570140 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT573558 TMEM120B transmembrane protein 120B 2 2
MIRT574282 OPRD1 opioid receptor delta 1 2 2
MIRT575335 Fbxo6 F-box protein 6 2 2
MIRT607057 IDS iduronate 2-sulfatase 2 2
MIRT607078 POM121L7 POM121 transmembrane nucleoporin like 7 pseudogene 2 2
MIRT607500 HEBP2 heme binding protein 2 2 2
MIRT607530 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT607808 RHBDL2 rhomboid like 2 2 2
MIRT608079 ZFP14 ZFP14 zinc finger protein 2 2
MIRT609119 NUDT3 nudix hydrolase 3 2 2
MIRT609745 PTCH1 patched 1 2 2
MIRT612904 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT618720 PCSK2 proprotein convertase subtilisin/kexin type 2 2 2
MIRT618778 HLA-E major histocompatibility complex, class I, E 2 2
MIRT619015 SLC2A6 solute carrier family 2 member 6 2 2
MIRT623223 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT623819 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT625704 OPTN optineurin 2 2
MIRT626437 CHDH choline dehydrogenase 2 2
MIRT628087 KAT7 lysine acetyltransferase 7 2 2
MIRT628936 APOB apolipoprotein B 2 2
MIRT633543 PGBD5 piggyBac transposable element derived 5 2 2
MIRT634348 SGOL1 shugoshin 1 2 2
MIRT634611 KIAA1919 major facilitator superfamily domain containing 4B 2 2
MIRT635243 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT636681 BTLA B and T lymphocyte associated 2 2
MIRT636923 ZNF845 zinc finger protein 845 2 2
MIRT637606 ZNF554 zinc finger protein 554 2 2
MIRT639242 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT640835 POLR3A RNA polymerase III subunit A 2 2
MIRT642098 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT643087 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT643934 C17orf104 meiosis specific with coiled-coil domain 2 2
MIRT644353 FXN frataxin 2 2
MIRT645628 SF3A3 splicing factor 3a subunit 3 2 2
MIRT645754 FAM213A family with sequence similarity 213 member A 2 2
MIRT646329 MVB12B multivesicular body subunit 12B 2 2
MIRT646817 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647019 ADCY2 adenylate cyclase 2 2 2
MIRT647621 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT648517 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT648871 ABCA6 ATP binding cassette subfamily A member 6 2 2
MIRT649620 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650062 CCDC134 coiled-coil domain containing 134 2 2
MIRT650734 TNFSF8 TNF superfamily member 8 2 2
MIRT652389 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT654352 RBM27 RNA binding motif protein 27 2 2
MIRT655796 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT657329 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT657734 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT660613 ANO6 anoctamin 6 2 2
MIRT661243 ARL17B ADP ribosylation factor like GTPase 17B 2 2
MIRT662245 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662921 MED18 mediator complex subunit 18 2 2
MIRT662963 JPH2 junctophilin 2 2 2
MIRT663347 ZNF74 zinc finger protein 74 2 2
MIRT663528 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT663547 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663977 ZNF786 zinc finger protein 786 2 2
MIRT664084 METTL2B methyltransferase like 2B 2 2
MIRT664358 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664421 TIGD6 tigger transposable element derived 6 2 2
MIRT664476 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT664979 TDRD1 tudor domain containing 1 2 2
MIRT665128 PYCRL pyrroline-5-carboxylate reductase 3 2 2
MIRT666259 SLC31A1 solute carrier family 31 member 1 2 2
MIRT666321 SLC16A10 solute carrier family 16 member 10 2 2
MIRT666881 POLQ DNA polymerase theta 2 2
MIRT668469 FADS6 fatty acid desaturase 6 2 2
MIRT669554 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT669835 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT670185 CCDC142 coiled-coil domain containing 142 2 2
MIRT672020 PXMP4 peroxisomal membrane protein 4 2 2
MIRT672070 KIAA0930 KIAA0930 2 2
MIRT672475 RTTN rotatin 2 2
MIRT672851 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673090 AK1 adenylate kinase 1 2 2
MIRT673581 KDELC2 KDEL motif containing 2 2 2
MIRT674586 SLC35B4 solute carrier family 35 member B4 2 2
MIRT675001 STRN3 striatin 3 2 2
MIRT679018 MTMR10 myotubularin related protein 10 2 2
MIRT679680 STAT3 signal transducer and activator of transcription 3 2 2
MIRT682833 FLG2 filaggrin family member 2 2 2
MIRT682886 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT683442 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 2
MIRT687040 RNF115 ring finger protein 115 2 2
MIRT691957 RHOH ras homolog family member H 2 2
MIRT694625 ZFPM1 zinc finger protein, FOG family member 1 2 2
MIRT695637 SLC26A2 solute carrier family 26 member 2 2 2
MIRT697640 WRN Werner syndrome RecQ like helicase 2 2
MIRT702009 MIDN midnolin 2 2
MIRT702034 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT704789 CDK6 cyclin dependent kinase 6 2 2
MIRT705728 AMMECR1L AMMECR1 like 2 2
MIRT705879 ADM adrenomedullin 2 2
MIRT706220 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT708418 CERS4 ceramide synthase 4 2 2
MIRT709114 C3orf18 chromosome 3 open reading frame 18 2 2
MIRT709595 ITPA inosine triphosphatase 2 2
MIRT710945 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT712345 NLN neurolysin 2 2
MIRT712530 CYTH2 cytohesin 2 2 2
MIRT714019 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT717287 ARMC12 armadillo repeat containing 12 2 2
MIRT717733 FGF1 fibroblast growth factor 1 2 2
MIRT718083 CLIC5 chloride intracellular channel 5 2 2
MIRT718562 MUC20 mucin 20, cell surface associated 2 2
MIRT721639 MYLK3 myosin light chain kinase 3 2 2
MIRT722632 C8A complement C8 alpha chain 2 2
MIRT723177 CDCA4 cell division cycle associated 4 2 2
MIRT725523 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-500b Methotrexate 126941 NSC740 approved resistant cell line (W1)
hsa-miR-500b-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-500b-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

Error report submission