pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ORMDL2   
Synonyms HSPC160, MST095, MSTP095, adoplin-2
Description ORMDL sphingolipid biosynthesis regulator 2
Transcript NM_014182   
Expression
Putative miRNA Targets on ORMDL2
3'UTR of ORMDL2
(miRNA target sites are highlighted)
>ORMDL2|NM_014182|3'UTR
   1 GGGATGGGTTTTGGGACAGCTCCATGGGCATGGGGAAGGCACTGAAACAGAGGACTATAAAACATCCTTCTCTTATTCTC
  81 CATACTGTCTTCTACACCTTTAAAGCCTGAGAACTATACAACCTTTCCCAGACTCCCAAGAAGAGAAGAGATTGGCAAAT
 161 GGGGCTCCTGGGCCCAGTCCTGCTAGTGGCAAGTTTCTTTGAATCAGGAAGGCAGGTGAGGTAAGGGCCAAATCACTCTC
 241 CTCCATAGCAGGAAGCCATTTGGGCAGCTTCTTTGGTGATTACATCTTTCCATATCTTTTACACTTACCACCTTCCAGCT
 321 CTGTTTTGCTGTGTATTTTTCTTACAATAATTTTTTTCAGCTATAGCTGCAGTTTAATCAGGATGGGTAGAGAGCTGTCC
 401 TCATAAGGCTGGGGGTGGGAAGATGGAATACTGACCTAATGTATAAAACTTAAAACAATTCTCCAATCCCCTCTCCTTTG
 481 GTCCAGTAGGAGGTGCCCTTCACTCTAAGCTTAACACTTAGTAGGGAAGAGATTCTCAAATGAGAAAAAGGGCTCCGGCT
 561 ATATGGGCAACAAAGAGGGAAGATACAGGTTGCCAGTTATACATTTATAGAAAGATAATCCCCTGGCTTTAAATAGTCAT
 641 GTACATACAAATATGAACAAACTTAAAAAAAAAATACAAACCCTTGGATCACATGGGGGCTTCTGGGAACCCCCGTATTC
 721 TTCCCCCTCACCCAAGGGCAGTGGGCATGAATCTACTTTTTAAAAATGATTAATTTTGGCAAAAAAAAAAAAAAAAAAAA
 801 AAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUCGUUCU-----GGGGCAGAGAUUu 5'
            ||:|:||     ||::  |||||| 
Target 5' ccAGTAGGAGGTGCCCTTCACTCTAAg 3'
483 - 509 128.00 -16.30
2
miRNA  3' ucucGUUCUG-GGGCAGAGAUUu 5'
              :|| || :|| ||||| | 
Target 5' actaTAAAACATCCTTCTCTTAt 3'
54 - 76 126.00 -8.82
3
miRNA  3' ucUCGUUCU-----GGGGCAGAGAUUu 5'
            || ||||     |||:| ||:||| 
Target 5' atAGAAAGATAATCCCCTGGCTTTAAa 3'
607 - 633 124.00 -14.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30141052 39 COSMIC
COSN30515437 53 COSMIC
COSN1149768 57 COSMIC
COSN31582062 81 COSMIC
COSN30462951 112 COSMIC
COSN30168042 120 COSMIC
COSN30145974 144 COSMIC
COSN31522316 207 COSMIC
COSN1577245 307 COSMIC
COSN1149771 316 COSMIC
COSN30348651 467 COSMIC
COSN28757585 500 COSMIC
COSN9751980 556 COSMIC
COSN25104500 658 COSMIC
COSN29537991 675 COSMIC
COSN26569216 676 COSMIC
COSN24698093 733 COSMIC
COSN31552581 862 COSMIC
COSN5717410 868 COSMIC
COSN5324333 876 COSMIC
COSN29271027 911 COSMIC
COSN20109696 912 COSMIC
COSN21960526 980 COSMIC
COSN31580041 1006 COSMIC
COSN31608146 1011 COSMIC
COSN5946982 1046 COSMIC
COSN26678090 1105 COSMIC
COSN26562077 1118 COSMIC
COSN31564198 1306 COSMIC
COSN6536674 1319 COSMIC
COSN31481241 1441 COSMIC
COSN30112888 1467 COSMIC
COSN30121855 1474 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs368255078 2 dbSNP
rs755516615 3 dbSNP
rs765517220 5 dbSNP
rs145894501 6 dbSNP
rs1215756962 7 dbSNP
rs758671585 9 dbSNP
rs946410068 15 dbSNP
rs1244919311 19 dbSNP
rs778180037 21 dbSNP
rs747265933 23 dbSNP
rs375352682 25 dbSNP
rs1273536593 27 dbSNP
rs1484868908 28 dbSNP
rs781344544 29 dbSNP
rs745722815 30 dbSNP
rs769835196 31 dbSNP
rs1050009288 32 dbSNP
rs779697000 38 dbSNP
rs749127859 43 dbSNP
rs768474178 46 dbSNP
rs773947594 49 dbSNP
rs761470784 54 dbSNP
rs771506381 60 dbSNP
rs1312065902 63 dbSNP
rs1453497963 66 dbSNP
rs1056017638 67 dbSNP
rs548581301 68 dbSNP
rs765822021 73 dbSNP
rs752973841 79 dbSNP
rs1234415802 82 dbSNP
rs113256470 84 dbSNP
rs764575179 86 dbSNP
rs751772063 88 dbSNP
rs757556143 90 dbSNP
rs569990100 95 dbSNP
rs375046398 96 dbSNP
rs1355611176 98 dbSNP
rs750572536 99 dbSNP
rs1187908105 100 dbSNP
rs1191360626 102 dbSNP
rs755979123 105 dbSNP
rs1487676830 110 dbSNP
rs894722504 117 dbSNP
rs1411226694 128 dbSNP
rs111416072 133 dbSNP
rs1162482912 136 dbSNP
rs942299535 138 dbSNP
rs1472537563 141 dbSNP
rs1386489389 143 dbSNP
rs1176240980 146 dbSNP
rs563977009 148 dbSNP
rs1206417659 152 dbSNP
rs1449605543 153 dbSNP
rs1291331192 168 dbSNP
rs1246895743 171 dbSNP
rs1416002935 174 dbSNP
rs749783944 177 dbSNP
rs1307248426 179 dbSNP
rs1223272471 190 dbSNP
rs1374747660 195 dbSNP
rs1300373388 199 dbSNP
rs1434791376 216 dbSNP
rs1406030375 219 dbSNP
rs1365278679 225 dbSNP
rs1302151856 227 dbSNP
rs185258417 237 dbSNP
rs1030440710 238 dbSNP
rs1411978474 241 dbSNP
rs112289913 245 dbSNP
rs1308371771 247 dbSNP
rs755423873 250 dbSNP
rs1408654815 256 dbSNP
rs1178816796 259 dbSNP
rs1407871030 260 dbSNP
rs867185271 261 dbSNP
rs1222935461 269 dbSNP
rs14299 271 dbSNP
rs1285920085 273 dbSNP
rs1356360690 276 dbSNP
rs1227258303 280 dbSNP
rs1284109211 280 dbSNP
rs1215192537 282 dbSNP
rs1317543587 287 dbSNP
rs1309805189 288 dbSNP
rs118090673 292 dbSNP
rs1018145347 293 dbSNP
rs1284399238 295 dbSNP
rs878928766 303 dbSNP
rs577712540 307 dbSNP
rs990052175 309 dbSNP
rs1012925453 317 dbSNP
rs1160644847 328 dbSNP
rs1275733085 329 dbSNP
rs1482950536 331 dbSNP
rs1180565024 343 dbSNP
rs1021227253 346 dbSNP
rs1023012375 348 dbSNP
rs1199932121 351 dbSNP
rs971380032 351 dbSNP
rs981547911 353 dbSNP
rs1186091032 360 dbSNP
rs1181345443 362 dbSNP
rs570613022 364 dbSNP
rs1486238182 365 dbSNP
rs967034891 370 dbSNP
rs1208099308 377 dbSNP
rs1411768050 387 dbSNP
rs977110644 388 dbSNP
rs1264268165 391 dbSNP
rs1225771665 397 dbSNP
rs138499406 404 dbSNP
rs1338824923 410 dbSNP
rs928381290 412 dbSNP
rs142915973 413 dbSNP
rs992065619 414 dbSNP
rs924666073 419 dbSNP
rs59395135 423 dbSNP
rs1405299842 426 dbSNP
rs1177008787 434 dbSNP
rs1470842315 436 dbSNP
rs916115833 440 dbSNP
rs942248840 442 dbSNP
rs1369677530 448 dbSNP
rs1264101368 455 dbSNP
rs1180237554 458 dbSNP
rs1427590121 467 dbSNP
rs574726012 469 dbSNP
rs1244319573 481 dbSNP
rs1206048293 483 dbSNP
rs1336029500 488 dbSNP
rs536575943 489 dbSNP
rs1251158460 491 dbSNP
rs554924606 498 dbSNP
rs576370949 508 dbSNP
rs543645826 509 dbSNP
rs1297223705 517 dbSNP
rs1449859875 522 dbSNP
rs1381325365 529 dbSNP
rs565070588 543 dbSNP
rs1454579703 550 dbSNP
rs1051814402 557 dbSNP
rs368707776 558 dbSNP
rs915163706 559 dbSNP
rs879573216 562 dbSNP
rs1281895214 564 dbSNP
rs1444087176 572 dbSNP
rs1366765397 576 dbSNP
rs946662793 582 dbSNP
rs1018509085 590 dbSNP
rs1228630715 601 dbSNP
rs540416869 616 dbSNP
rs1296421643 621 dbSNP
rs899699149 622 dbSNP
rs1050294870 626 dbSNP
rs1011424682 629 dbSNP
rs1481794237 637 dbSNP
rs1341826853 641 dbSNP
rs371220284 644 dbSNP
rs910243627 645 dbSNP
rs1243238816 646 dbSNP
rs944359873 656 dbSNP
rs1315212146 663 dbSNP
rs1391784122 665 dbSNP
rs150092729 665 dbSNP
rs150551551 665 dbSNP
rs998480381 665 dbSNP
rs1281245331 666 dbSNP
rs1035401988 675 dbSNP
rs1424324846 675 dbSNP
rs1366398040 676 dbSNP
rs960052199 685 dbSNP
rs991283653 686 dbSNP
rs916047702 689 dbSNP
rs1183091309 693 dbSNP
rs576912858 696 dbSNP
rs1421253567 699 dbSNP
rs1040120139 715 dbSNP
rs897542471 716 dbSNP
rs1490098602 717 dbSNP
rs1292016591 718 dbSNP
rs1224116223 727 dbSNP
rs1235761731 730 dbSNP
rs919519572 732 dbSNP
rs929581159 737 dbSNP
rs1337447039 739 dbSNP
rs993690392 740 dbSNP
rs17118024 743 dbSNP
rs1451446495 744 dbSNP
rs1189383451 755 dbSNP
rs1052189215 762 dbSNP
rs748223182 774 dbSNP
rs887949431 787 dbSNP
rs1384259538 792 dbSNP
rs1447953498 797 dbSNP
rs1174103236 801 dbSNP
rs1427788224 807 dbSNP
rs1013209466 812 dbSNP
rs200481385 812 dbSNP
rs1023210328 814 dbSNP
rs143344071 818 dbSNP
rs772067014 819 dbSNP
rs1283009361 820 dbSNP
rs1205177876 823 dbSNP
rs190055999 826 dbSNP
rs1002844851 828 dbSNP
rs1031763098 835 dbSNP
rs77199828 836 dbSNP
rs990246346 840 dbSNP
rs1323917221 849 dbSNP
rs1285434658 855 dbSNP
rs1011372341 856 dbSNP
rs1326061803 864 dbSNP
rs148318131 868 dbSNP
rs773462463 871 dbSNP
rs141478282 872 dbSNP
rs531059934 873 dbSNP
rs1176279999 878 dbSNP
rs910448281 881 dbSNP
rs763680554 882 dbSNP
rs944390843 883 dbSNP
rs1166500087 884 dbSNP
rs374382418 889 dbSNP
rs1346180196 895 dbSNP
rs1241124959 898 dbSNP
rs1193316931 907 dbSNP
rs3064698 911 dbSNP
rs78290923 911 dbSNP
rs59926423 912 dbSNP
rs201503010 913 dbSNP
rs367953529 915 dbSNP
rs1241210884 916 dbSNP
rs370540372 918 dbSNP
rs1261826084 920 dbSNP
rs1324180079 923 dbSNP
rs919017666 925 dbSNP
rs570700853 926 dbSNP
rs1212564364 931 dbSNP
rs754561765 934 dbSNP
rs79015557 938 dbSNP
rs1270952456 945 dbSNP
rs1229738024 964 dbSNP
rs1209426278 971 dbSNP
rs546755172 976 dbSNP
rs1454049248 980 dbSNP
rs1013060137 984 dbSNP
rs1048796743 992 dbSNP
rs568512821 996 dbSNP
rs541986017 997 dbSNP
rs1418375011 1000 dbSNP
rs1168075636 1002 dbSNP
rs1450796433 1013 dbSNP
rs1382925038 1014 dbSNP
rs1477576383 1017 dbSNP
rs948842052 1022 dbSNP
rs1044681038 1024 dbSNP
rs1461751071 1027 dbSNP
rs1239100170 1029 dbSNP
rs1202224598 1030 dbSNP
rs1436967313 1030 dbSNP
rs372234259 1033 dbSNP
rs1002875932 1039 dbSNP
rs973563531 1042 dbSNP
rs1207482184 1052 dbSNP
rs919457428 1053 dbSNP
rs114376850 1054 dbSNP
rs1246758813 1078 dbSNP
rs12424201 1079 dbSNP
rs1180853111 1090 dbSNP
rs1382002811 1093 dbSNP
rs1414072941 1105 dbSNP
rs891784875 1110 dbSNP
rs987761828 1111 dbSNP
rs776623623 1112 dbSNP
rs1441949093 1118 dbSNP
rs1457764267 1123 dbSNP
rs1012101692 1131 dbSNP
rs943395770 1134 dbSNP
rs1431310685 1138 dbSNP
rs1319260966 1160 dbSNP
rs1385863439 1175 dbSNP
rs576452766 1176 dbSNP
rs1444674486 1177 dbSNP
rs1415903650 1179 dbSNP
rs1175354013 1180 dbSNP
rs915328660 1185 dbSNP
rs946842108 1186 dbSNP
rs375499901 1188 dbSNP
rs1042863680 1191 dbSNP
rs1207023567 1193 dbSNP
rs1489931562 1196 dbSNP
rs1291257032 1202 dbSNP
rs1021691749 1207 dbSNP
rs1223348275 1216 dbSNP
rs537334199 1219 dbSNP
rs561967563 1225 dbSNP
rs558822514 1227 dbSNP
rs181324049 1230 dbSNP
rs1403458994 1237 dbSNP
rs1343289211 1240 dbSNP
rs541194728 1245 dbSNP
rs1267561363 1247 dbSNP
rs1348662279 1251 dbSNP
rs1211789005 1252 dbSNP
rs1156312626 1262 dbSNP
rs1057068682 1263 dbSNP
rs1017484199 1265 dbSNP
rs758193958 1270 dbSNP
rs1184111351 1273 dbSNP
rs976024096 1278 dbSNP
rs1479304409 1282 dbSNP
rs918953039 1283 dbSNP
rs1451308204 1287 dbSNP
rs559202059 1304 dbSNP
rs928974512 1306 dbSNP
rs1489584747 1311 dbSNP
rs984971351 1313 dbSNP
rs1012593838 1319 dbSNP
rs908933392 1323 dbSNP
rs1215129277 1327 dbSNP
rs1318091987 1328 dbSNP
rs948873214 1329 dbSNP
rs1222093014 1334 dbSNP
rs1323203800 1355 dbSNP
rs1253752996 1358 dbSNP
rs1282251007 1360 dbSNP
rs34221929 1362 dbSNP
rs541424990 1371 dbSNP
rs1286666394 1376 dbSNP
rs1429361848 1379 dbSNP
rs1409078703 1380 dbSNP
rs137920300 1387 dbSNP
rs183976233 1388 dbSNP
rs1163424766 1390 dbSNP
rs756968754 1412 dbSNP
rs775000634 1418 dbSNP
rs1435180819 1421 dbSNP
rs767171600 1426 dbSNP
rs988099075 1427 dbSNP
rs1486207771 1429 dbSNP
rs754136727 1429 dbSNP
rs531569063 1448 dbSNP
rs965031515 1449 dbSNP
rs974767763 1453 dbSNP
rs1301644321 1459 dbSNP
rs1022143340 1464 dbSNP
rs1313616583 1464 dbSNP
rs534419660 1468 dbSNP
rs915277338 1468 dbSNP
rs946394105 1471 dbSNP
rs889834931 1476 dbSNP
rs978171872 1483 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000243045.5 | 3UTR | AGUUCGAGACCAGCCUGGGCAACAUGGUGAAACCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE32688 Pancreatic cancer -0.55 5.6e-4 -0.536 7.8e-4 32 Click to see details
GSE28260 Renal cortex and medulla 0.712 3.2e-3 0.626 1.1e-2 13 Click to see details
GSE26953 Aortic valvular endothelial cells 0.297 7.9e-2 0.066 3.8e-1 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.289 8.1e-2 0.309 6.6e-2 25 Click to see details
GSE42095 Differentiated embryonic stem cells -0.223 1.5e-1 -0.277 1.0e-1 23 Click to see details
GSE28544 Breast cancer 0.213 1.6e-1 0.220 1.5e-1 24 Click to see details
GSE38226 Liver fibrosis -0.2 1.9e-1 -0.361 5.4e-2 21 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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