pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol BCAR1   
Synonyms CAS, CAS1, CASS1, CRKAS, P130Cas
Description BCAR1, Cas family scaffolding protein
Transcript NM_001170714   
Other Transcripts NM_001170715 , NM_001170716 , NM_001170717 , NM_001170718 , NM_001170719 , NM_001170720 , NM_001170721 , NM_014567   
Expression
Putative miRNA Targets on BCAR1
3'UTR of BCAR1
(miRNA target sites are highlighted)
>BCAR1|NM_001170714|3'UTR
   1 GGGTGGTGACCCCAGGAGGGAGGCAGGGGAGGGGTGCGGCGGTCCCAGCTCCCTGGCTCCCATGTCAAGAGTCGCTGTGC
  81 CACAGGCTTAGGGACAGGACCCCAGCTCTGCGTCGGTCCTGGTGCCCTGGATGCCCAGGAATCTGTATATATTTATGGCC
 161 GGGCAGGGTGTGGGGCCATGCCTCCTCAGGAGCCGAAGCCCAGGGGCCGGCCAGTGGCCTTCCCCAGCATGCACCACGGG
 241 CCCGGGTTGGGTCACCAGACGGGGCTGGAGTGTGAGGGTCCTGCAGCCTGCAGGACCTCGTGCCACCCCGAGGGCTGAGC
 321 CTGGTCCCACGAGGGTGCCGTGTCCCCTGACAGGGCCAGTGCAGTTTGGTGTGTCCTCCGCCTTACCAGGAGAAGAACCT
 401 GAAGAACTATTTTTCGTTATTGGTTTTCCAATCATTTGACTAAGAGTCTCCATTTAAATAAAGTTTTTAAAAGGAAGAGC
 481 AAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accACGUUUUCAUUAA---C----ACCAAAAa 5'
             || |:|| || ||   |    ||||||| 
Target 5' accTGAAGAACTATTTTTCGTTATTGGTTTTc 3'
397 - 428 156.00 -6.20
2
miRNA  3' acCACGUUUUCAUUAACACCAAAaa 5'
            | || |: | |:|| |||| |  
Target 5' caGGGCCAGTGCAGTT-TGGTGTgt 3'
351 - 374 110.00 -9.04
3
miRNA  3' accacGUUUUC-AUUAACACCAaaaa 5'
               |:|::| |:|   ||||    
Target 5' cacccCGAGGGCTGAGCCTGGTccca 3'
304 - 329 92.00 -6.86
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30498082 41 COSMIC
COSN1190632 116 COSMIC
COSN30512584 178 COSMIC
COSN14896946 244 COSMIC
COSN15923512 603 COSMIC
COSN17200947 734 COSMIC
COSN6647256 771 COSMIC
COSN7271471 880 COSMIC
COSN23137424 1084 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs776611127 1 dbSNP
rs770813118 3 dbSNP
rs1192833247 5 dbSNP
rs1487232579 6 dbSNP
rs1265062225 8 dbSNP
rs902557220 10 dbSNP
rs891254433 12 dbSNP
rs1205459830 15 dbSNP
rs1355238599 22 dbSNP
rs1263296904 23 dbSNP
rs1246404169 24 dbSNP
rs746969552 26 dbSNP
rs1278185747 27 dbSNP
rs1398713053 29 dbSNP
rs777782531 31 dbSNP
rs758347979 33 dbSNP
rs747667974 34 dbSNP
rs1051202440 36 dbSNP
rs1295501474 37 dbSNP
rs778461478 38 dbSNP
rs771116069 40 dbSNP
rs1168537071 41 dbSNP
rs946708403 46 dbSNP
rs1476816855 50 dbSNP
rs1425628945 51 dbSNP
rs375165091 56 dbSNP
rs1184043028 57 dbSNP
rs1209812717 59 dbSNP
rs1231302247 60 dbSNP
rs1469713647 61 dbSNP
rs974068065 62 dbSNP
rs1165515064 63 dbSNP
rs1331673893 64 dbSNP
rs1419948908 67 dbSNP
rs184893847 68 dbSNP
rs1039291429 70 dbSNP
rs1238639592 72 dbSNP
rs909136271 73 dbSNP
rs563062880 74 dbSNP
rs1414868456 86 dbSNP
rs1294378635 90 dbSNP
rs950610842 95 dbSNP
rs1357976292 99 dbSNP
rs983581971 104 dbSNP
rs1272989995 109 dbSNP
rs1035570117 111 dbSNP
rs918316135 112 dbSNP
rs543272765 114 dbSNP
rs573256135 115 dbSNP
rs1022696697 123 dbSNP
rs1186927516 124 dbSNP
rs1011258034 127 dbSNP
rs1463358087 133 dbSNP
rs892767667 138 dbSNP
rs1034903189 139 dbSNP
rs1434784420 141 dbSNP
rs1032342061 143 dbSNP
rs999156332 145 dbSNP
rs192557216 149 dbSNP
rs1413525330 153 dbSNP
rs536015678 155 dbSNP
rs1327350944 158 dbSNP
rs1051234223 160 dbSNP
rs188022096 161 dbSNP
rs900496322 163 dbSNP
rs1211685274 168 dbSNP
rs1443311203 171 dbSNP
rs1243009069 172 dbSNP
rs899947591 174 dbSNP
rs1484742138 179 dbSNP
rs1038390362 181 dbSNP
rs1262348019 183 dbSNP
rs1189779678 184 dbSNP
rs780857412 185 dbSNP
rs1172042664 189 dbSNP
rs75627144 192 dbSNP
rs1174949936 194 dbSNP
rs912385961 195 dbSNP
rs983188887 195 dbSNP
rs929275817 199 dbSNP
rs1302711920 200 dbSNP
rs1357366775 206 dbSNP
rs72802389 208 dbSNP
rs973834507 209 dbSNP
rs1316768676 216 dbSNP
rs1364695810 218 dbSNP
rs1242778253 219 dbSNP
rs1235368250 224 dbSNP
rs751103019 234 dbSNP
rs969849014 235 dbSNP
rs915670036 236 dbSNP
rs1305933030 237 dbSNP
rs151033775 238 dbSNP
rs182556327 239 dbSNP
rs1435764762 241 dbSNP
rs957344732 243 dbSNP
rs779902357 244 dbSNP
rs990404963 245 dbSNP
rs1031370279 250 dbSNP
rs1381297911 256 dbSNP
rs1195070317 258 dbSNP
rs998913431 259 dbSNP
rs955673565 260 dbSNP
rs192598389 261 dbSNP
rs565591821 263 dbSNP
rs549078097 264 dbSNP
rs1384100815 266 dbSNP
rs1442101740 275 dbSNP
rs966557419 281 dbSNP
rs1369123039 283 dbSNP
rs1022583548 287 dbSNP
rs1029847154 289 dbSNP
rs1307845613 291 dbSNP
rs35971393 295 dbSNP
rs1318631110 297 dbSNP
rs187825747 299 dbSNP
rs143727544 300 dbSNP
rs1017712620 309 dbSNP
rs544438819 310 dbSNP
rs1005676495 311 dbSNP
rs531102613 317 dbSNP
rs1047079926 319 dbSNP
rs34078065 320 dbSNP
rs1252116589 321 dbSNP
rs1416800849 322 dbSNP
rs1269670087 329 dbSNP
rs1445930647 330 dbSNP
rs1411909834 336 dbSNP
rs770417481 338 dbSNP
rs939322378 339 dbSNP
rs1490195821 340 dbSNP
rs750206331 341 dbSNP
rs1229029559 342 dbSNP
rs1344280422 345 dbSNP
rs1045641633 346 dbSNP
rs948537205 349 dbSNP
rs1226343349 350 dbSNP
rs183257480 352 dbSNP
rs148949337 354 dbSNP
rs1287593451 355 dbSNP
rs190712814 364 dbSNP
rs957171496 371 dbSNP
rs761660157 379 dbSNP
rs924337636 381 dbSNP
rs5842 385 dbSNP
rs571366646 388 dbSNP
rs1029878318 394 dbSNP
rs967069553 398 dbSNP
rs915165276 404 dbSNP
rs764003757 405 dbSNP
rs964555655 407 dbSNP
rs1478525173 409 dbSNP
rs997016957 416 dbSNP
rs1460508446 420 dbSNP
rs1017680104 427 dbSNP
rs574215766 431 dbSNP
rs1416602776 432 dbSNP
rs557179447 435 dbSNP
rs1006122199 438 dbSNP
rs1291376845 440 dbSNP
rs1378082834 441 dbSNP
rs887216600 442 dbSNP
rs1047558808 445 dbSNP
rs186588022 446 dbSNP
rs1297253754 450 dbSNP
rs906492062 451 dbSNP
rs1305450594 452 dbSNP
rs183438034 452 dbSNP
rs571563343 477 dbSNP
rs1486374963 478 dbSNP
rs11640206 480 dbSNP
rs1026766172 482 dbSNP
rs1472645620 489 dbSNP
rs1187519623 496 dbSNP
rs1421874201 497 dbSNP
rs993760462 500 dbSNP
rs1436164883 507 dbSNP
rs899371426 511 dbSNP
rs145746484 512 dbSNP
rs1013008567 513 dbSNP
rs565691316 514 dbSNP
rs548730164 520 dbSNP
rs1431160727 522 dbSNP
rs1345388632 525 dbSNP
rs1276444568 526 dbSNP
rs1221270114 532 dbSNP
rs371759406 534 dbSNP
rs773465805 540 dbSNP
rs191176577 541 dbSNP
rs939132329 542 dbSNP
rs977542723 543 dbSNP
rs770131945 544 dbSNP
rs1328728813 546 dbSNP
rs1277093764 547 dbSNP
rs922312830 548 dbSNP
rs927650466 555 dbSNP
rs975043204 558 dbSNP
rs1042407598 560 dbSNP
rs1188087389 561 dbSNP
rs1253897262 563 dbSNP
rs748520832 565 dbSNP
rs550757255 566 dbSNP
rs1174778633 570 dbSNP
rs1480231136 571 dbSNP
rs781779698 572 dbSNP
rs1184616851 573 dbSNP
rs989418062 577 dbSNP
rs867250410 584 dbSNP
rs1468630854 591 dbSNP
rs964294020 591 dbSNP
rs1434132919 596 dbSNP
rs1326106051 598 dbSNP
rs1372784703 600 dbSNP
rs1017588723 601 dbSNP
rs910418418 602 dbSNP
rs984316899 602 dbSNP
rs987543714 603 dbSNP
rs1442972658 606 dbSNP
rs1286957915 613 dbSNP
rs1264764045 619 dbSNP
rs1327470231 619 dbSNP
rs951594685 620 dbSNP
rs1253836608 621 dbSNP
rs531010608 622 dbSNP
rs1003667969 623 dbSNP
rs1322576665 631 dbSNP
rs1178839332 640 dbSNP
rs186205674 644 dbSNP
rs993869408 645 dbSNP
rs769264857 646 dbSNP
rs1165429592 649 dbSNP
rs963422892 650 dbSNP
rs1016904272 654 dbSNP
rs1370481169 655 dbSNP
rs1278492769 657 dbSNP
rs1322486931 659 dbSNP
rs1403303324 659 dbSNP
rs1335762714 662 dbSNP
rs1449361039 666 dbSNP
rs1023669851 668 dbSNP
rs1342852637 668 dbSNP
rs1349229775 669 dbSNP
rs552069645 670 dbSNP
rs1013143855 693 dbSNP
rs1274264005 700 dbSNP
rs894632916 701 dbSNP
rs1208219738 702 dbSNP
rs1389880808 705 dbSNP
rs528450892 707 dbSNP
rs1206774870 710 dbSNP
rs1057271712 712 dbSNP
rs1472261417 713 dbSNP
rs1188372864 720 dbSNP
rs559679894 724 dbSNP
rs1399221631 727 dbSNP
rs1162234131 728 dbSNP
rs1407303855 729 dbSNP
rs894416180 735 dbSNP
rs117388570 736 dbSNP
rs1473075954 737 dbSNP
rs574174135 739 dbSNP
rs563820545 745 dbSNP
rs180785923 747 dbSNP
rs935858156 748 dbSNP
rs1181683798 760 dbSNP
rs906241281 760 dbSNP
rs577922818 761 dbSNP
rs1041551510 763 dbSNP
rs1294451903 764 dbSNP
rs1460677095 765 dbSNP
rs1248440470 767 dbSNP
rs933778271 768 dbSNP
rs116990773 770 dbSNP
rs77276355 771 dbSNP
rs942339941 774 dbSNP
rs1228455968 781 dbSNP
rs118039559 783 dbSNP
rs1482776572 784 dbSNP
rs1313504224 788 dbSNP
rs984738922 790 dbSNP
rs1452574040 791 dbSNP
rs951657665 792 dbSNP
rs1186633472 797 dbSNP
rs1366350819 797 dbSNP
rs373373277 799 dbSNP
rs1373289825 802 dbSNP
rs1166346803 804 dbSNP
rs1053691728 809 dbSNP
rs1434834812 811 dbSNP
rs1026266032 812 dbSNP
rs982262928 819 dbSNP
rs910383575 820 dbSNP
rs970824658 822 dbSNP
rs1327232975 823 dbSNP
rs1023701062 831 dbSNP
rs1230811777 839 dbSNP
rs1012266601 844 dbSNP
rs1341493600 848 dbSNP
rs750023726 863 dbSNP
rs112813432 867 dbSNP
rs1407091024 868 dbSNP
rs933173408 873 dbSNP
rs1000561055 874 dbSNP
rs1448526652 882 dbSNP
rs1186237673 883 dbSNP
rs1247057004 888 dbSNP
rs919304022 891 dbSNP
rs972192206 892 dbSNP
rs963690339 895 dbSNP
rs903093495 898 dbSNP
rs1390525245 899 dbSNP
rs1386043799 900 dbSNP
rs369258966 902 dbSNP
rs1188121126 905 dbSNP
rs933810268 907 dbSNP
rs1437761443 911 dbSNP
rs900952044 912 dbSNP
rs1364790420 915 dbSNP
rs1241089991 921 dbSNP
rs144423808 924 dbSNP
rs1490683118 926 dbSNP
rs1289019060 927 dbSNP
rs1310535400 930 dbSNP
rs1245838293 932 dbSNP
rs1261275683 933 dbSNP
rs1330889500 935 dbSNP
rs1206645091 940 dbSNP
rs774567811 940 dbSNP
rs140461283 941 dbSNP
rs1468695090 942 dbSNP
rs1343577145 943 dbSNP
rs1298167040 951 dbSNP
rs1198724649 952 dbSNP
rs942371212 953 dbSNP
rs1459132377 957 dbSNP
rs755374113 961 dbSNP
rs757129576 965 dbSNP
rs930249209 977 dbSNP
rs1295512496 983 dbSNP
rs1365532154 983 dbSNP
rs12924999 984 dbSNP
rs1294303229 986 dbSNP
rs1352302638 989 dbSNP
rs1226343126 992 dbSNP
rs982295562 994 dbSNP
rs77689180 998 dbSNP
rs1002968268 1002 dbSNP
rs188021109 1004 dbSNP
rs1263343253 1005 dbSNP
rs1423927649 1016 dbSNP
rs990865017 1016 dbSNP
rs1021107105 1018 dbSNP
rs1195919006 1021 dbSNP
rs528768893 1022 dbSNP
rs1009348412 1023 dbSNP
rs958146542 1026 dbSNP
rs1172464998 1029 dbSNP
rs1473894516 1030 dbSNP
rs1032792255 1038 dbSNP
rs1426473795 1040 dbSNP
rs1475759227 1041 dbSNP
rs34795869 1043 dbSNP
rs999522308 1045 dbSNP
rs1053486738 1046 dbSNP
rs1372317300 1049 dbSNP
rs1191390624 1050 dbSNP
rs1481236218 1051 dbSNP
rs1355808729 1052 dbSNP
rs549498405 1056 dbSNP
rs967725215 1060 dbSNP
rs1310104237 1062 dbSNP
rs1320785153 1064 dbSNP
rs1266140611 1065 dbSNP
rs547656504 1068 dbSNP
rs1020137537 1069 dbSNP
rs1253525870 1078 dbSNP
rs1051692118 1081 dbSNP
rs997979045 1084 dbSNP
rs1483771142 1086 dbSNP
rs1203075767 1092 dbSNP
rs1411895149 1100 dbSNP
rs1307233660 1104 dbSNP
rs900971612 1113 dbSNP
rs867990350 1114 dbSNP
rs1039508202 1117 dbSNP
rs1007084811 1119 dbSNP
rs1343943410 1122 dbSNP
rs758411646 1125 dbSNP
rs1392028308 1127 dbSNP
rs888188712 1128 dbSNP
rs1048558043 1129 dbSNP
rs16957329 1132 dbSNP
rs918848203 1135 dbSNP
rs1398764819 1138 dbSNP
rs909305016 1139 dbSNP
rs1382375474 1143 dbSNP
rs1299408764 1146 dbSNP
rs1299764203 1147 dbSNP
rs1339390731 1160 dbSNP
rs751664221 1161 dbSNP
rs1274513749 1163 dbSNP
rs958712897 1173 dbSNP
rs563731815 1175 dbSNP
rs1313365326 1176 dbSNP
rs570845679 1177 dbSNP
rs1236031784 1181 dbSNP
rs1046650061 1185 dbSNP
rs1483130369 1195 dbSNP
rs543948926 1196 dbSNP
rs1470742080 1197 dbSNP
rs916790098 1198 dbSNP
rs990979609 1201 dbSNP
rs186358202 1203 dbSNP
rs1416157097 1211 dbSNP
rs564289731 1212 dbSNP
rs1472611673 1216 dbSNP
rs925374781 1219 dbSNP
rs1358322417 1225 dbSNP
rs1020487526 1226 dbSNP
rs1322115977 1227 dbSNP
rs1362635046 1229 dbSNP
rs1009731278 1232 dbSNP
rs766428529 1235 dbSNP
rs1252080729 1236 dbSNP
rs1032100019 1242 dbSNP
rs368652358 1244 dbSNP
rs181732325 1250 dbSNP
rs1051662147 1256 dbSNP
rs1463762460 1256 dbSNP
rs145294001 1257 dbSNP
rs1247302644 1258 dbSNP
rs1479067955 1260 dbSNP
rs115384736 1262 dbSNP
rs1424440503 1267 dbSNP
rs1457549313 1268 dbSNP
rs1262675513 1272 dbSNP
rs1036236901 1282 dbSNP
rs1456329697 1283 dbSNP
rs188973088 1287 dbSNP
rs769895330 1288 dbSNP
rs1337588109 1299 dbSNP
rs909272379 1300 dbSNP
rs1305009386 1305 dbSNP
rs1367562222 1307 dbSNP
rs1229385979 1308 dbSNP
rs1290659341 1313 dbSNP
rs762319103 1315 dbSNP
rs1208305202 1318 dbSNP
rs1290890777 1319 dbSNP
rs767345411 1321 dbSNP
rs76017162 1327 dbSNP
rs1337322259 1330 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000162330.5 | 3UTR | GUUUUCCAAUCAUUUGACUAAGAGUCUCCAUUUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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