pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZYG11A   
Synonyms ZYG11
Description zyg-11 family member A, cell cycle regulator
Transcript NM_001004339   
Expression
Putative miRNA Targets on ZYG11A
3'UTR of ZYG11A
(miRNA target sites are highlighted)
>ZYG11A|NM_001004339|3'UTR
   1 ACCTAAGGAATTTCAGAGGTGTGTGCTCTTCCTCAATGTCAGGTGTTCTGCCCTGGCAGTAATTGCACATCAGTTGTCAT
  81 TGGAGTTTGTGAGTTGGCTGTCTCATTGGCCTTTGATTGTTGATTTTATATATGTTACAAAAGGTTGGATTTGTATGATA
 161 GCTGTAATCCCAAGTCAAGTTGGACTCATTCTGCAGCCTTTCAGCAGCAATTTTGAAGACTCAAACCGTGGACTCTGGGA
 241 AGGCCTGGGAGCTTGTGTTGGAACAGCTATGCAAGTTACTTTTCTCTAGCCTTGGACAATTTTTTCCCTTTGGGAGCTTG
 321 TCATGGGAGTGGGACCTGTTCACTAGAAGAGAAAGGAAACCTACAGGGAGACTTTGATATTTATATTAAATTTCCTTTGT
 401 TGTTATCGTCATGTGAAGCTATGAGAAAAGCTTGGGAAGCATATGCTTCAAAATGTAGTGTTTAGAAGGCAGAACCCCTG
 481 TTGGAGAGCGGGGAAAAGAATTTATTTATTTATTTATTTATCTATGGCTGGGTATGGTGGCTCACGCCTGTAATCCCAGC
 561 ACTTTGGGAGGCCAAGGCAGGTGGATTGTCTGAACTCAGGAGTTCGAGATCAGCCTTGCCAACGTGGTAAAACTCCGTCT
 641 CTACCAAAAAATACAAAAATTAGCTGAGCGTGGTGGTGTGCACCTTTACTCCTAGCTACTTGGAGGCTGAGGTGGGAGGA
 721 CCACTTGAGCCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATTGCACCACTGCACTCCAGCCTGGATGACAGAGTGAGACC
 801 TCATCTCAAATGAATAGAGGGGTGGAGAAAAGAGAAATATATTTTTTTACCTTTTTTTTTTTTTTTTTTTTTGTGACGGA
 881 ATCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCCAGCAAT
 961 TCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACATGCCGCCACGCCCGGCTAATTTTTGTATTTTTTAGTAG
1041 AGACAGGGTTTCACCATATTGGTCAGGCTGGTCTCGACCTCCTGACCTCGTGATCCACCCGTCTCGGCCTCCCAAAGTGC
1121 TGGGATTACAGGTGTGAGTCACTGCACCTGGCCTTTTTACAATTTTGGGTGTCTATCTTTGGCATGTTTCCTGTTATGTG
1201 AGCATGACATGCTGTGTATGTGAGTGAGCTTGTAGGGCGTGGTGGGACTTAGGCATTTGCAGACAGTGTTTAGATGAAAG
1281 ATTACATGTAATGATAAATCTGAATCCCTCCATTTTATTTGGGTGGAACCATGACCAAAAATGGTAGGAAGACGAAAGGC
1361 CAGAAAGAGACTTTGCCAGAGAGTTCACGGAGTTTTCTTACCCCGCATGCTGACTAAAGAAAACATGGGCTTTTCTGAAA
1441 CCAGCTTCAACTACAGTATAAACTATATCAGAAGCTTACTTGATAAGCCTTGCGGAGCTGCTCTGAGGAATAGTGTGAAT
1521 TCCTTCCTTGCCTTATTGTTGACTGTTAATGAACATGTTTTGTCATTTATCTGTTTAAGTTTTTCAGAAAATAAAAGTAA
1601 ATTTCTGTTAGCACATTTAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|: |||:  :: ||||||| 
Target 5' tgTCGCCCAGGCTGGAGTGCAGt 3'
890 - 912 153.00 -19.70
2
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|:|||  | || ||||| | 
Target 5' tcTCGGCC-TCCCAAAGTGCTGg 3'
1102 - 1123 128.00 -17.80
3
miRNA  3' ucGGUCGGUUGAGUGUC--ACGUCu 5'
            ||||  :|  || ||  ||||| 
Target 5' gcCCAG--GAGGCAGAGGTTGCAGt 3'
729 - 751 117.00 -13.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30117817 67 COSMIC
COSN20073390 70 COSMIC
COSN23704589 477 COSMIC
COSN17326326 499 COSMIC
COSN21324398 731 COSMIC
COSN29302398 793 COSMIC
COSN24805678 1483 COSMIC
COSN6038624 1515 COSMIC
COSN6038625 1530 COSMIC
COSN25348638 1599 COSMIC
COSN1448885 1609 COSMIC
COSN32121592 2035 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1230885022 5 dbSNP
rs1252881636 6 dbSNP
rs1472382626 10 dbSNP
rs553267979 12 dbSNP
rs916690202 15 dbSNP
rs766289865 19 dbSNP
rs1466572558 20 dbSNP
rs1272678011 21 dbSNP
rs1300907789 21 dbSNP
rs1212333603 24 dbSNP
rs1337627461 25 dbSNP
rs1344105520 25 dbSNP
rs1200958289 26 dbSNP
rs1172536401 28 dbSNP
rs577852187 31 dbSNP
rs1444757253 32 dbSNP
rs911241062 35 dbSNP
rs538495718 36 dbSNP
rs753716842 37 dbSNP
rs755090294 38 dbSNP
rs556743729 39 dbSNP
rs1369566766 46 dbSNP
rs1323342598 49 dbSNP
rs1462902495 53 dbSNP
rs1395146708 57 dbSNP
rs1169617603 62 dbSNP
rs1460277031 64 dbSNP
rs913024995 70 dbSNP
rs1442386963 74 dbSNP
rs1429380808 81 dbSNP
rs945871157 85 dbSNP
rs575058393 90 dbSNP
rs756469256 106 dbSNP
rs929991225 108 dbSNP
rs1375199449 112 dbSNP
rs777712296 120 dbSNP
rs1170153906 130 dbSNP
rs925878868 131 dbSNP
rs1227646393 141 dbSNP
rs937265459 142 dbSNP
rs1300557422 144 dbSNP
rs1442472703 154 dbSNP
rs780393794 157 dbSNP
rs542332608 162 dbSNP
rs1371183929 165 dbSNP
rs1328090750 169 dbSNP
rs1389652393 179 dbSNP
rs530388326 180 dbSNP
rs1168315038 181 dbSNP
rs1170936432 194 dbSNP
rs1462645869 194 dbSNP
rs1394706196 198 dbSNP
rs1172078393 203 dbSNP
rs560798201 207 dbSNP
rs371387395 225 dbSNP
rs144036843 228 dbSNP
rs1181677554 229 dbSNP
rs1320226907 231 dbSNP
rs1253037879 234 dbSNP
rs571035804 244 dbSNP
rs1029409618 245 dbSNP
rs1485103640 246 dbSNP
rs1399203766 251 dbSNP
rs1277749385 252 dbSNP
rs1236120190 270 dbSNP
rs1283468160 278 dbSNP
rs554830968 284 dbSNP
rs1036526936 287 dbSNP
rs897298208 288 dbSNP
rs994312401 290 dbSNP
rs1230394413 300 dbSNP
rs967481252 302 dbSNP
rs1329232615 304 dbSNP
rs1254969415 337 dbSNP
rs977070805 339 dbSNP
rs150969152 355 dbSNP
rs1007586952 357 dbSNP
rs1018271917 362 dbSNP
rs1158088761 364 dbSNP
rs1469000815 380 dbSNP
rs958255074 385 dbSNP
rs1306171815 386 dbSNP
rs1183256375 389 dbSNP
rs1255914733 392 dbSNP
rs1212539270 397 dbSNP
rs989663436 400 dbSNP
rs965761531 408 dbSNP
rs535375615 409 dbSNP
rs948165509 411 dbSNP
rs967181424 412 dbSNP
rs747972844 414 dbSNP
rs982645038 419 dbSNP
rs1232653300 426 dbSNP
rs1353297254 431 dbSNP
rs560039816 433 dbSNP
rs1454380706 448 dbSNP
rs925806613 451 dbSNP
rs928064048 455 dbSNP
rs533670349 456 dbSNP
rs775419640 457 dbSNP
rs930001688 460 dbSNP
rs1047027182 476 dbSNP
rs1317643059 477 dbSNP
rs888376302 480 dbSNP
rs771629749 483 dbSNP
rs941247302 487 dbSNP
rs1418838789 488 dbSNP
rs1303573130 490 dbSNP
rs1056158631 491 dbSNP
rs1039511767 495 dbSNP
rs916885978 498 dbSNP
rs747137019 499 dbSNP
rs1036087301 500 dbSNP
rs1190541512 500 dbSNP
rs899700362 500 dbSNP
rs552062448 501 dbSNP
rs1241163497 503 dbSNP
rs1190649229 504 dbSNP
rs563888406 513 dbSNP
rs1448198700 525 dbSNP
rs998019397 528 dbSNP
rs531099535 544 dbSNP
rs1029853448 546 dbSNP
rs1335762842 547 dbSNP
rs187221473 549 dbSNP
rs998541782 551 dbSNP
rs1352204109 559 dbSNP
rs1032652262 563 dbSNP
rs958286409 578 dbSNP
rs6693081 580 dbSNP
rs1048535387 582 dbSNP
rs1023887065 585 dbSNP
rs969995858 587 dbSNP
rs535060384 589 dbSNP
rs1189628926 590 dbSNP
rs1266985255 596 dbSNP
rs1419311110 604 dbSNP
rs1165761250 606 dbSNP
rs1476207697 607 dbSNP
rs1419702943 616 dbSNP
rs982291087 619 dbSNP
rs1467027598 624 dbSNP
rs1018950969 625 dbSNP
rs1378365648 629 dbSNP
rs111589810 638 dbSNP
rs1163963267 644 dbSNP
rs1212990691 645 dbSNP
rs998612565 651 dbSNP
rs1298352082 655 dbSNP
rs1440272258 660 dbSNP
rs1368958280 663 dbSNP
rs951437967 664 dbSNP
rs1437851776 668 dbSNP
rs796699212 670 dbSNP
rs1168802852 671 dbSNP
rs1456202511 675 dbSNP
rs1390407888 678 dbSNP
rs1292540785 679 dbSNP
rs1452021794 681 dbSNP
rs1396792726 690 dbSNP
rs1191673887 691 dbSNP
rs909846859 692 dbSNP
rs941360299 702 dbSNP
rs1306539161 711 dbSNP
rs1206382522 715 dbSNP
rs1375315367 717 dbSNP
rs1239986624 730 dbSNP
rs1275619699 731 dbSNP
rs770617108 741 dbSNP
rs1323840634 742 dbSNP
rs921176571 746 dbSNP
rs1220265100 750 dbSNP
rs1373264364 757 dbSNP
rs1265066379 763 dbSNP
rs1444807573 764 dbSNP
rs958791322 771 dbSNP
rs1481102946 773 dbSNP
rs571573708 777 dbSNP
rs1200594576 779 dbSNP
rs538557929 780 dbSNP
rs574936015 781 dbSNP
rs950019441 784 dbSNP
rs971689666 794 dbSNP
rs1178950764 800 dbSNP
rs1472789751 806 dbSNP
rs1050926347 808 dbSNP
rs1256587930 816 dbSNP
rs1210387475 818 dbSNP
rs902949912 819 dbSNP
rs998574189 820 dbSNP
rs556806946 823 dbSNP
rs1210914372 833 dbSNP
rs1316480474 837 dbSNP
rs542565901 837 dbSNP
rs1226028130 839 dbSNP
rs1351455497 839 dbSNP
rs892847363 841 dbSNP
rs1376915074 842 dbSNP
rs1412486222 842 dbSNP
rs1302853527 843 dbSNP
rs1163871069 849 dbSNP
rs375504742 850 dbSNP
rs1182719295 852 dbSNP
rs1185543299 852 dbSNP
rs1258527921 852 dbSNP
rs1259084192 852 dbSNP
rs1369759029 852 dbSNP
rs1469441466 852 dbSNP
rs1474310294 852 dbSNP
rs1485570843 852 dbSNP
rs1211083382 854 dbSNP
rs1330453136 857 dbSNP
rs1463254179 859 dbSNP
rs1328891539 860 dbSNP
rs1398839253 861 dbSNP
rs1312973894 872 dbSNP
rs1381353174 873 dbSNP
rs1452774734 873 dbSNP
rs1335175643 874 dbSNP
rs1382031666 875 dbSNP
rs1393642413 875 dbSNP
rs1226928839 876 dbSNP
rs1462806420 878 dbSNP
rs1312539800 879 dbSNP
rs1368883104 881 dbSNP
rs1308283851 885 dbSNP
rs1220630546 886 dbSNP
rs1256402730 887 dbSNP
rs796555188 890 dbSNP
rs536057901 894 dbSNP
rs192251589 895 dbSNP
rs1239107240 897 dbSNP
rs1252920949 901 dbSNP
rs1212434208 912 dbSNP
rs1482274949 920 dbSNP
rs12742311 922 dbSNP
rs575011494 924 dbSNP
rs1262098271 925 dbSNP
rs1266433677 936 dbSNP
rs1226174427 937 dbSNP
rs1305415283 938 dbSNP
rs1012581714 944 dbSNP
rs1435180597 946 dbSNP
rs535571407 947 dbSNP
rs1369682446 948 dbSNP
rs1168049517 949 dbSNP
rs1422503794 951 dbSNP
rs555890643 954 dbSNP
rs1469851184 958 dbSNP
rs1024337685 963 dbSNP
rs969642883 976 dbSNP
rs1170797411 979 dbSNP
rs1450158675 984 dbSNP
rs1004130826 991 dbSNP
rs1394608058 997 dbSNP
rs1035158646 1001 dbSNP
rs951466671 1002 dbSNP
rs879277618 1007 dbSNP
rs909961612 1008 dbSNP
rs1268419985 1012 dbSNP
rs962712771 1013 dbSNP
rs572557042 1014 dbSNP
rs975419707 1016 dbSNP
rs1228748670 1017 dbSNP
rs921199112 1022 dbSNP
rs1300666339 1023 dbSNP
rs933894851 1030 dbSNP
rs1235262999 1047 dbSNP
rs1302786923 1057 dbSNP
rs998477336 1060 dbSNP
rs1020290317 1066 dbSNP
rs1389460562 1077 dbSNP
rs541658357 1082 dbSNP
rs1276484357 1085 dbSNP
rs1317572411 1086 dbSNP
rs1374873453 1087 dbSNP
rs1171860412 1088 dbSNP
rs564615274 1090 dbSNP
rs1378712104 1091 dbSNP
rs1280898647 1094 dbSNP
rs1417681902 1097 dbSNP
rs1254466291 1098 dbSNP
rs924400359 1101 dbSNP
rs934481472 1102 dbSNP
rs1054242552 1103 dbSNP
rs578258552 1106 dbSNP
rs1277501093 1107 dbSNP
rs1201678765 1112 dbSNP
rs1345195535 1113 dbSNP
rs1000243887 1116 dbSNP
rs1236859045 1118 dbSNP
rs1033105101 1120 dbSNP
rs545793458 1131 dbSNP
rs763336272 1142 dbSNP
rs866915687 1143 dbSNP
rs991710968 1144 dbSNP
rs1024168868 1145 dbSNP
rs1207734480 1147 dbSNP
rs905448893 1157 dbSNP
rs971711515 1161 dbSNP
rs1456141136 1162 dbSNP
rs562489638 1163 dbSNP
rs1003756901 1166 dbSNP
rs1192413872 1174 dbSNP
rs1035229677 1176 dbSNP
rs554676052 1184 dbSNP
rs1442479400 1185 dbSNP
rs375154212 1190 dbSNP
rs1175923665 1198 dbSNP
rs1004323870 1204 dbSNP
rs1016997637 1215 dbSNP
rs984476497 1217 dbSNP
rs910312099 1219 dbSNP
rs547988192 1226 dbSNP
rs943157011 1228 dbSNP
rs764294269 1229 dbSNP
rs1341098028 1230 dbSNP
rs1317747830 1232 dbSNP
rs762218851 1233 dbSNP
rs576220740 1234 dbSNP
rs1296780106 1236 dbSNP
rs1340107306 1239 dbSNP
rs149655343 1240 dbSNP
rs111732953 1252 dbSNP
rs78729759 1253 dbSNP
rs1365530675 1262 dbSNP
rs1240966709 1263 dbSNP
rs1186123679 1264 dbSNP
rs143715558 1269 dbSNP
rs1218745006 1283 dbSNP
rs1248550178 1286 dbSNP
rs112284568 1289 dbSNP
rs1291804117 1290 dbSNP
rs934512502 1293 dbSNP
rs1230189330 1296 dbSNP
rs989965749 1299 dbSNP
rs1000212812 1302 dbSNP
rs914335699 1307 dbSNP
rs1355822054 1308 dbSNP
rs183969553 1312 dbSNP
rs1226267755 1322 dbSNP
rs1285109370 1335 dbSNP
rs1367514564 1336 dbSNP
rs1490455061 1345 dbSNP
rs1440879147 1346 dbSNP
rs1348462872 1349 dbSNP
rs1325973925 1354 dbSNP
rs894536919 1355 dbSNP
rs564921187 1359 dbSNP
rs533851807 1367 dbSNP
rs1166387039 1372 dbSNP
rs766206825 1378 dbSNP
rs773701572 1378 dbSNP
rs938339030 1379 dbSNP
rs1056671395 1389 dbSNP
rs993339706 1390 dbSNP
rs1222037591 1392 dbSNP
rs1437086912 1394 dbSNP
rs763360143 1399 dbSNP
rs887341531 1402 dbSNP
rs1004354913 1405 dbSNP
rs750573149 1406 dbSNP
rs984403023 1417 dbSNP
rs910247706 1427 dbSNP
rs1277181634 1433 dbSNP
rs147019698 1435 dbSNP
rs1354365871 1464 dbSNP
rs1391203592 1466 dbSNP
rs1406351577 1473 dbSNP
rs766731433 1474 dbSNP
rs975898091 1476 dbSNP
rs996902044 1484 dbSNP
rs1325723127 1487 dbSNP
rs113973990 1491 dbSNP
rs1249402235 1493 dbSNP
rs1180241829 1494 dbSNP
rs754074911 1495 dbSNP
rs1280287563 1500 dbSNP
rs987194536 1505 dbSNP
rs577057731 1512 dbSNP
rs924836489 1532 dbSNP
rs936264803 1543 dbSNP
rs1031618681 1550 dbSNP
rs894513857 1552 dbSNP
rs955919263 1556 dbSNP
rs1359833454 1565 dbSNP
rs11804575 1566 dbSNP
rs1286870510 1568 dbSNP
rs914368021 1569 dbSNP
rs948556092 1570 dbSNP
rs1450722655 1574 dbSNP
rs555578353 1586 dbSNP
rs993308648 1598 dbSNP
rs1176665499 1601 dbSNP
rs778518428 1617 dbSNP
rs938383608 1622 dbSNP
rs1026128951 1627 dbSNP
rs752526681 1635 dbSNP
rs1456074086 1656 dbSNP
rs1177273127 1662 dbSNP
rs1181543409 1663 dbSNP
rs1380251456 1665 dbSNP
rs1473319399 1675 dbSNP
rs566205498 1676 dbSNP
rs1411897307 1678 dbSNP
rs1239314601 1696 dbSNP
rs1329088925 1700 dbSNP
rs1266554036 1703 dbSNP
rs373132233 1707 dbSNP
rs868861774 1714 dbSNP
rs940243313 1722 dbSNP
rs1405053321 1723 dbSNP
rs534890685 1725 dbSNP
rs1038505808 1733 dbSNP
rs558358399 1737 dbSNP
rs1380661662 1746 dbSNP
rs898703239 1760 dbSNP
rs552701146 1762 dbSNP
rs1049868618 1771 dbSNP
rs1161351986 1774 dbSNP
rs777741088 1779 dbSNP
rs1008251458 1794 dbSNP
rs1031641638 1798 dbSNP
rs1422305649 1802 dbSNP
rs1449915545 1806 dbSNP
rs1182524542 1808 dbSNP
rs1282278473 1811 dbSNP
rs578242800 1815 dbSNP
rs544143182 1817 dbSNP
rs187106171 1827 dbSNP
rs977559725 1828 dbSNP
rs866008121 1832 dbSNP
rs1242105797 1834 dbSNP
rs1315476229 1836 dbSNP
rs192659751 1837 dbSNP
rs1238073850 1838 dbSNP
rs1054755831 1847 dbSNP
rs1362459345 1849 dbSNP
rs377756940 1852 dbSNP
rs147613111 1859 dbSNP
rs1236025639 1860 dbSNP
rs928421524 1870 dbSNP
rs1291583861 1874 dbSNP
rs1456521583 1887 dbSNP
rs561616462 1890 dbSNP
rs983087688 1892 dbSNP
rs142221030 1897 dbSNP
rs929406195 1899 dbSNP
rs1191017003 1901 dbSNP
rs1450666238 1906 dbSNP
rs1267042818 1917 dbSNP
rs1047520439 1919 dbSNP
rs540843749 1925 dbSNP
rs1489712335 1935 dbSNP
rs1426074795 1938 dbSNP
rs74081274 1940 dbSNP
rs745463954 1942 dbSNP
rs1339393793 1943 dbSNP
rs1190289750 1948 dbSNP
rs1228976266 1957 dbSNP
rs1402816223 1963 dbSNP
rs1330452387 1986 dbSNP
rs1038623999 1988 dbSNP
rs1006547783 1991 dbSNP
rs533019184 1993 dbSNP
rs1332120619 1997 dbSNP
rs920162318 1999 dbSNP
rs1400409031 2005 dbSNP
rs932862186 2011 dbSNP
rs1170582174 2018 dbSNP
rs1050329041 2022 dbSNP
rs184164911 2030 dbSNP
rs1008275722 2042 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|: |||:  :: ||||||| 
Target 5' --UCGCCCAGGCUGGAGUGCAGu 3'
1 - 21
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001004339 | 3UTR | AUCUCGCUCUGUCGCCCAGGCUGGAGUGCAGUGGCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001004339 | 3UTR | ACGGAAUCUCGCUCUGUCGCCCAGGCUGGAGUGCAGUGGCACAAUCUCGGCUCACUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001004339 | 3UTR | CGGAAUCUCGCUCUGUCGCCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001004339 | 3UTR | CUCGCUCUGUCGCCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001004339 | 3UTR | CGCUCUGUCGCCCAGGCUGGAGUGCAGUGGCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000371532.1 | 3UTR | UCGCCCAGGCUGGAGUGCAGUGGCACAAUCUCGGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

Error report submission