pre-miRNA Information
pre-miRNA hsa-mir-6871   
Genomic Coordinates chr20: 41169023 - 41169078
Description Homo sapiens miR-6871 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6871-3p
Sequence 35| CAGCACCCUGUGGCUCCCACAG |56
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN16670239 4 COSMIC
COSN1872096 9 COSMIC
COSM1741616 16 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs545076040 1 dbSNP
rs1273348199 2 dbSNP
rs1202373059 5 dbSNP
rs1340707970 7 dbSNP
rs372994756 8 dbSNP
rs869070782 15 dbSNP
rs931272568 16 dbSNP
rs1333765165 18 dbSNP
Putative Targets

Gene Information
Gene Symbol ZC3H4   
Synonyms C19orf7
Description zinc finger CCCH-type containing 4
Transcript NM_015168   
Expression
Putative miRNA Targets on ZC3H4
3'UTR of ZC3H4
(miRNA target sites are highlighted)
>ZC3H4|NM_015168|3'UTR
   1 TGTCCAGCCAGAGCTGCGGCTCCAGCCACCCTTCCTAGGGTGGCATTCAGGGCAGCACCCAGGGTAGGGAACTTGGGGGC
  81 AAGGGGAGGCAGGCTGGGTGTTCCTTTTTTCTTTTCTTTTTCTTTTGCTTTCCGTCTCTTTTATTTTTTTTTAAAGTAGT
 161 ACTTTCTTTGAGATTTGTAAATTGTATATAACCATCTTAAGTTCTGGTCAGTGTGGCGGGCTCAGGGGCTCCTGCTGAGC
 241 AAACCGACTCATGCCCGCAAACCTGTGAACTTTCGCCAGTGCCTGGCCTCAGACTCTGTGGGCTCTGCGTGGCCGGGCCT
 321 TGCTGGAGGCCCAGTGGGTTTTCTGGGCAAAGCATGGCCCCTTTTCCCCAGGACAAAGGGAACAGTTGGTGTCTGGGAAG
 401 GTATTGAACGCTCCTCACCCTGTGCCCGAAGAGACCCGGAACCAAGACCATGGCAGGGCCTGCGTGGAAGCAGGTCCAGG
 481 CGTTTCTAGAACCCTAGGGTGCACCATCACTGTCTTTTCAGTGCAGGCTGTAACAACCCACTCAGGAGACAGTGAGAGTG
 561 AAAAGGTATTAAGGAAAAAGCCCCCAGCGGCACTATGGGGGCTCCCTGGCGCATGCCTGCTCCTGTCCCTGGATTACCAC
 641 ACGTGCCCTCCCTGCCACCCTCCGTCTAGAGCAAGCGGATGCCCCCCAGCCTGCAGCAGAAGCCTCCACAGTGAGAACTG
 721 GACCCAAAGGTAGTGGGGGCCGGTGTGGGGCAGAGTCCTGAAGAGCCACCTCTAGGAGGCAGCCCCTAGGAGCACGCACG
 801 TTCTGTCAGTATTACCCCACCTGTCCTATCAGGTGGGCCACACCCTGCTTGCCCACACCAGGGTCTGTCCTGGTCCTCAA
 881 GCCACGCACCCGCTATGCCTGCACTGCAGCCCAGCCCCGGACAGCTCCAGGATCCGTGCAGTGGCTGCGCCGCCAGGCCC
 961 CAACAATGGGGACCCTGGGGTGGCTCCTGGCCAAGTGTTCTCTGTTTTCCTCGCACCTCCTTACACTGTGTGACCTGCAG
1041 GGCATGAGGTATTGATGTGTTCGGGTTTCCTTTCCCAAGCCAGCAGATGCAGGTGTTCCAAGGTGTGTTGCTCTGTGGGA
1121 TTTGTGGACACTTAAGAAACGGACTGAGTGGGAACCCTGCAGCCAGGGGATGGGGAGCCTCTGCTCCCCCCATGCTCCCA
1201 CCCTGGCTGAGGGCCAGCCTCATCTGCAGAGCCCTGGAGGAGGCCCACCTATGGACACAGCCCGAGAGATGGGCGCAAGG
1281 GGTGCTGGGGGAGGCCTGCTATCCTGCCTCTGGGCCACTTGAGGGGCCTCAGGAAGTGTGTGCTTGTGGCTGCATCTGCC
1361 CGTCTCCCTGGCCCACCATGTGGCTGCAGGCCAAGCTCTTCATTGCTGACCATGAAGAGACCTAGTTACCTGCCAAGGGA
1441 TTCCCCTTCCCTCCTCCTCAGGGTGGGGTGAACAAGGCTCCTATCCCACCCCACCCCAAAAAGAGAAAAATGAAAAACTC
1521 ATAGTTTGGAGCCAGGAGGCAGGGTGTCCTACAGGGCTGCACAGCCCTGAGGGGTCAGTGCTGGGATCTGGTTGGTTGGT
1601 TTGTCTTTTTGTCTTTTTTTTTTTTTTTTTTTTTACACAATCATTAATGAGATTTGTCTTCAGCCACCAGTGTTGGCCTT
1681 GAAGCAGAGGGCACAGCCCTTGGTGTTTGTAAAATAAGTATGAATACACAGTGTGGCAGTGTTGTGGTTTTTGTTGTTGT
1761 TTTTCCTCTCCTTTTGAGAATTTTCTTTTGTAAAAGAAAAATATTTTTTAAACCGAAATCTGTGGATGAAATAGAAGCTG
1841 GAGCCCTCCTCTTGGAATATTCAGCCTAAGAACCTCATAGGACTATGAATTCACCCGAAATTCTCATTTGCCATCAGGCC
1921 GAGCTTTTAAAGAAAAATTGTTCTCTAACCAGGATTGTAACAAAAGTGTAAATACTGTTTCAGAGTTGAGAGTTGGTGGT
2001 GCAAATATGTATATAATGAACTGTATTTTTACAATGATCGCCGCATGACTATTTCACACCCTTTTTATACTCCATATCTG
2081 TCTTCCAGAAACGTCACCTGCCTTTCTCCTGTGGTCTCTTAATCCAGTAATTGTATTACTGCCATTAAAGGATGCAGTTA
2161 TTTTAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gacACCCUCGGUGUCCCACGAc 5'
             |||| | || :||||||| 
Target 5' agaTGGGCG-CAAGGGGTGCTg 3'
1267 - 1287 162.00 -26.00
2
miRNA  3' gacaCCCUCGGU--GUCCCACGAc 5'
              ||||| ||  | |||||:| 
Target 5' caagGGGAGGCAGGCTGGGTGTTc 3'
80 - 103 148.00 -21.30
3
miRNA  3' gacaccCUCGGUGUCCCACGac 5'
                || || :|||||||  
Target 5' tttctaGAACCCTAGGGTGCac 3'
483 - 504 140.00 -16.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30634381 21 COSMIC
COSN24384403 26 COSMIC
COSN31579373 38 COSMIC
COSN1216960 104 COSMIC
COSN31588523 122 COSMIC
COSN30545130 153 COSMIC
COSN8261234 664 COSMIC
COSN31540818 821 COSMIC
COSN31555124 948 COSMIC
COSN9851227 951 COSMIC
COSN31515791 1062 COSMIC
COSN31587935 1102 COSMIC
COSN16127556 1169 COSMIC
COSN17963727 1462 COSMIC
COSN26548215 1638 COSMIC
COSN29467615 1735 COSMIC
COSN31583211 1778 COSMIC
COSN8974054 1815 COSMIC
COSN26642784 1975 COSMIC
COSN9851226 2005 COSMIC
COSN31523385 2015 COSMIC
COSN31588522 2026 COSMIC
COSN31573192 2043 COSMIC
rs3810291 610 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1174016766 1 dbSNP
rs1474121424 4 dbSNP
rs1422371048 5 dbSNP
rs1193555933 16 dbSNP
rs373277578 17 dbSNP
rs775976670 18 dbSNP
rs977836669 19 dbSNP
rs1185820825 23 dbSNP
rs772525083 29 dbSNP
rs759915791 39 dbSNP
rs1202441402 41 dbSNP
rs1337526343 44 dbSNP
rs956104859 51 dbSNP
rs924628447 55 dbSNP
rs976094974 56 dbSNP
rs1168441223 63 dbSNP
rs116422996 65 dbSNP
rs1007726891 71 dbSNP
rs545940971 77 dbSNP
rs1320585910 79 dbSNP
rs1336033151 80 dbSNP
rs959321749 85 dbSNP
rs1276404606 91 dbSNP
rs1347891983 93 dbSNP
rs1027205159 94 dbSNP
rs1234647734 98 dbSNP
rs1468120272 104 dbSNP
rs1404094577 105 dbSNP
rs576929737 110 dbSNP
rs1461287356 111 dbSNP
rs995257003 114 dbSNP
rs1190805316 119 dbSNP
rs1371037179 120 dbSNP
rs1198124033 121 dbSNP
rs200133762 121 dbSNP
rs373635343 121 dbSNP
rs1375697226 123 dbSNP
rs1002558330 127 dbSNP
rs1037135347 127 dbSNP
rs1160503846 127 dbSNP
rs772651632 127 dbSNP
rs1044335031 128 dbSNP
rs1449576231 132 dbSNP
rs1015673013 133 dbSNP
rs746325283 134 dbSNP
rs1054288489 136 dbSNP
rs1279944898 138 dbSNP
rs1352463917 140 dbSNP
rs891127740 140 dbSNP
rs1195645623 142 dbSNP
rs530234419 143 dbSNP
rs576923616 143 dbSNP
rs1337829091 144 dbSNP
rs976534204 148 dbSNP
rs1265259307 149 dbSNP
rs1420807779 152 dbSNP
rs966090776 153 dbSNP
rs1028325408 154 dbSNP
rs1358841774 156 dbSNP
rs1367516853 158 dbSNP
rs1458537814 162 dbSNP
rs1312938958 163 dbSNP
rs1450294435 165 dbSNP
rs1293021443 166 dbSNP
rs910514667 170 dbSNP
rs986374367 170 dbSNP
rs1332414965 172 dbSNP
rs779535953 175 dbSNP
rs1237477086 178 dbSNP
rs557009293 179 dbSNP
rs1275566124 186 dbSNP
rs1334720596 188 dbSNP
rs757748261 201 dbSNP
rs1321785816 204 dbSNP
rs1055010279 205 dbSNP
rs1243344768 208 dbSNP
rs952279514 212 dbSNP
rs1027816742 215 dbSNP
rs934812674 217 dbSNP
rs754244603 218 dbSNP
rs1429930339 222 dbSNP
rs377646693 224 dbSNP
rs748164484 226 dbSNP
rs903392161 231 dbSNP
rs1424630369 233 dbSNP
rs1015343528 236 dbSNP
rs1161201237 245 dbSNP
rs537065225 246 dbSNP
rs1463949922 248 dbSNP
rs1400005778 252 dbSNP
rs574529524 252 dbSNP
rs917534282 253 dbSNP
rs990514036 254 dbSNP
rs1181679713 256 dbSNP
rs147653086 257 dbSNP
rs1308801479 262 dbSNP
rs1219157078 267 dbSNP
rs919834576 268 dbSNP
rs974013206 272 dbSNP
rs961190806 273 dbSNP
rs1237864517 274 dbSNP
rs558510371 275 dbSNP
rs1181539516 276 dbSNP
rs778208845 287 dbSNP
rs934484883 288 dbSNP
rs1230151960 293 dbSNP
rs1357110986 298 dbSNP
rs1284741741 301 dbSNP
rs554927619 303 dbSNP
rs902992681 307 dbSNP
rs1015473526 308 dbSNP
rs189205686 309 dbSNP
rs1400011250 310 dbSNP
rs1348416075 311 dbSNP
rs1277034198 313 dbSNP
rs955447202 314 dbSNP
rs183407642 315 dbSNP
rs1364634147 316 dbSNP
rs1311437523 322 dbSNP
rs779069722 322 dbSNP
rs1209662214 323 dbSNP
rs986091244 324 dbSNP
rs930929097 338 dbSNP
rs1489395095 353 dbSNP
rs920851453 354 dbSNP
rs1262592248 357 dbSNP
rs868831754 360 dbSNP
rs1406640895 366 dbSNP
rs996877923 370 dbSNP
rs1433040830 376 dbSNP
rs1158515178 381 dbSNP
rs558895087 381 dbSNP
rs1362003707 384 dbSNP
rs756224979 389 dbSNP
rs539207002 391 dbSNP
rs1358120189 393 dbSNP
rs972247575 394 dbSNP
rs1366638467 395 dbSNP
rs193198615 404 dbSNP
rs1308893966 405 dbSNP
rs374990554 409 dbSNP
rs903359676 410 dbSNP
rs533868631 411 dbSNP
rs1224000048 413 dbSNP
rs949106149 415 dbSNP
rs1452278099 416 dbSNP
rs1487383806 423 dbSNP
rs896255139 427 dbSNP
rs971554477 428 dbSNP
rs1488449049 433 dbSNP
rs1327072400 437 dbSNP
rs767446959 438 dbSNP
rs1439888720 446 dbSNP
rs759628885 450 dbSNP
rs1012598066 452 dbSNP
rs1406666039 458 dbSNP
rs751546942 463 dbSNP
rs186828034 464 dbSNP
rs1333068488 468 dbSNP
rs1377432161 470 dbSNP
rs568008593 473 dbSNP
rs1351793085 475 dbSNP
rs1272746396 481 dbSNP
rs908340236 482 dbSNP
rs1451499983 492 dbSNP
rs1349971879 495 dbSNP
rs944848381 496 dbSNP
rs986643260 499 dbSNP
rs1177621196 502 dbSNP
rs1235906723 504 dbSNP
rs1455177748 505 dbSNP
rs955621943 506 dbSNP
rs1163279135 514 dbSNP
rs921343153 514 dbSNP
rs1403502538 517 dbSNP
rs1172808081 519 dbSNP
rs1400759377 525 dbSNP
rs1445686425 529 dbSNP
rs1329063357 538 dbSNP
rs1334156207 541 dbSNP
rs1391537193 542 dbSNP
rs762801402 543 dbSNP
rs1450504749 547 dbSNP
rs1160517235 548 dbSNP
rs889191289 552 dbSNP
rs1355790230 553 dbSNP
rs34002474 555 dbSNP
rs975933818 555 dbSNP
rs1260620562 557 dbSNP
rs768911713 557 dbSNP
rs957387186 558 dbSNP
rs8111597 561 dbSNP
rs1193154159 562 dbSNP
rs1256579923 565 dbSNP
rs1443746044 566 dbSNP
rs149929169 573 dbSNP
rs972299743 576 dbSNP
rs1195223220 581 dbSNP
rs1241743063 582 dbSNP
rs1191192069 587 dbSNP
rs769497106 588 dbSNP
rs1024403696 589 dbSNP
rs1014357658 595 dbSNP
rs1416361765 598 dbSNP
rs1335169503 599 dbSNP
rs1339939199 601 dbSNP
rs1412940489 602 dbSNP
rs761319125 605 dbSNP
rs559555065 606 dbSNP
rs3810291 610 dbSNP
rs1347635569 611 dbSNP
rs982682498 612 dbSNP
rs532144113 613 dbSNP
rs1484495523 620 dbSNP
rs1038047405 629 dbSNP
rs939888189 632 dbSNP
rs908479609 634 dbSNP
rs1051034364 640 dbSNP
rs369082428 643 dbSNP
rs1191482653 648 dbSNP
rs957039292 651 dbSNP
rs1367947682 652 dbSNP
rs1032666773 653 dbSNP
rs140307627 663 dbSNP
rs151157903 664 dbSNP
rs1432314779 666 dbSNP
rs1433113548 676 dbSNP
rs921132037 677 dbSNP
rs1361291062 678 dbSNP
rs1366696045 679 dbSNP
rs182550020 680 dbSNP
rs1469687682 681 dbSNP
rs768095455 684 dbSNP
rs1178778601 686 dbSNP
rs1415387103 687 dbSNP
rs1274660113 688 dbSNP
rs1419135360 688 dbSNP
rs888908668 689 dbSNP
rs1241923717 700 dbSNP
rs577308304 700 dbSNP
rs1286086711 701 dbSNP
rs746499456 704 dbSNP
rs1203308420 705 dbSNP
rs1451443955 706 dbSNP
rs1248666120 712 dbSNP
rs1189149947 713 dbSNP
rs994850880 717 dbSNP
rs1452772384 720 dbSNP
rs1460763159 724 dbSNP
rs1380983095 726 dbSNP
rs1235657726 729 dbSNP
rs60935434 732 dbSNP
rs1393458515 733 dbSNP
rs1312526811 735 dbSNP
rs779624191 736 dbSNP
rs771562851 740 dbSNP
rs1024498510 741 dbSNP
rs1014952870 742 dbSNP
rs958898520 744 dbSNP
rs536217735 747 dbSNP
rs572670212 749 dbSNP
rs1250881336 751 dbSNP
rs1179031154 752 dbSNP
rs916722417 756 dbSNP
rs991266057 757 dbSNP
rs778226868 766 dbSNP
rs1156967422 770 dbSNP
rs1451276484 772 dbSNP
rs898249861 774 dbSNP
rs1172720316 781 dbSNP
rs142126770 793 dbSNP
rs756381714 795 dbSNP
rs878899997 796 dbSNP
rs1003865903 797 dbSNP
rs957091083 799 dbSNP
rs539323202 800 dbSNP
rs1166973472 803 dbSNP
rs977483728 807 dbSNP
rs570289703 809 dbSNP
rs967035510 810 dbSNP
rs1314203893 811 dbSNP
rs1340598919 811 dbSNP
rs1243958051 814 dbSNP
rs1051000972 816 dbSNP
rs781452961 818 dbSNP
rs1198991147 819 dbSNP
rs1257225973 826 dbSNP
rs1422116521 832 dbSNP
rs921068397 836 dbSNP
rs1175752132 842 dbSNP
rs369056272 843 dbSNP
rs1424541490 844 dbSNP
rs1187312949 851 dbSNP
rs1183489865 852 dbSNP
rs1483469914 853 dbSNP
rs755069129 856 dbSNP
rs1232035389 860 dbSNP
rs1171784451 862 dbSNP
rs1202594835 863 dbSNP
rs1483871325 869 dbSNP
rs537181367 871 dbSNP
rs1008789886 875 dbSNP
rs568779651 878 dbSNP
rs1304283412 880 dbSNP
rs1379254746 881 dbSNP
rs936071174 885 dbSNP
rs1028768225 886 dbSNP
rs926020350 887 dbSNP
rs977504681 891 dbSNP
rs899250572 892 dbSNP
rs189571718 893 dbSNP
rs766306238 897 dbSNP
rs1202689915 898 dbSNP
rs1005297304 909 dbSNP
rs1319369508 910 dbSNP
rs547877721 918 dbSNP
rs528063346 919 dbSNP
rs565852883 923 dbSNP
rs552090140 924 dbSNP
rs1034491632 930 dbSNP
rs866150641 935 dbSNP
rs1178692070 936 dbSNP
rs1359331685 936 dbSNP
rs532255402 938 dbSNP
rs1306484227 939 dbSNP
rs1412056257 940 dbSNP
rs1361962549 941 dbSNP
rs1474789198 947 dbSNP
rs916773686 948 dbSNP
rs1297577588 949 dbSNP
rs963565866 951 dbSNP
rs1016683100 952 dbSNP
rs1456486888 960 dbSNP
rs563190912 963 dbSNP
rs543203806 966 dbSNP
rs1278251534 971 dbSNP
rs1166851645 976 dbSNP
rs925699331 980 dbSNP
rs146340933 981 dbSNP
rs1241972972 983 dbSNP
rs1485193034 984 dbSNP
rs886773295 992 dbSNP
rs1029745669 996 dbSNP
rs998079968 1000 dbSNP
rs1453404810 1001 dbSNP
rs1171428219 1002 dbSNP
rs1381621950 1004 dbSNP
rs1419704861 1004 dbSNP
rs1317039120 1006 dbSNP
rs967465144 1008 dbSNP
rs530148041 1012 dbSNP
rs911530707 1013 dbSNP
rs561387643 1014 dbSNP
rs987820872 1015 dbSNP
rs953276027 1018 dbSNP
rs1370042669 1021 dbSNP
rs1473438735 1025 dbSNP
rs1252138679 1031 dbSNP
rs1208828194 1033 dbSNP
rs1301603104 1036 dbSNP
rs899760843 1038 dbSNP
rs541081173 1039 dbSNP
rs1487231448 1043 dbSNP
rs1039516164 1044 dbSNP
rs935820094 1049 dbSNP
rs572437318 1051 dbSNP
rs1028819108 1060 dbSNP
rs973220610 1063 dbSNP
rs557584580 1071 dbSNP
rs1286984217 1080 dbSNP
rs904398939 1081 dbSNP
rs1230675360 1084 dbSNP
rs1351447153 1086 dbSNP
rs1282911330 1087 dbSNP
rs1385251533 1089 dbSNP
rs750237348 1090 dbSNP
rs1239558595 1091 dbSNP
rs436187 1092 dbSNP
rs946136647 1095 dbSNP
rs1157438566 1102 dbSNP
rs1405210282 1103 dbSNP
rs917212499 1109 dbSNP
rs1015443461 1112 dbSNP
rs1393451499 1121 dbSNP
rs1459615821 1130 dbSNP
rs1333134046 1134 dbSNP
rs1379348338 1137 dbSNP
rs993248974 1140 dbSNP
rs1004941477 1141 dbSNP
rs1371353260 1146 dbSNP
rs1230527508 1150 dbSNP
rs1387882970 1155 dbSNP
rs1334786339 1157 dbSNP
rs1212160647 1159 dbSNP
rs1260425831 1161 dbSNP
rs906557128 1162 dbSNP
rs1180702202 1163 dbSNP
rs1230660852 1175 dbSNP
rs1473531841 1181 dbSNP
rs1181942398 1182 dbSNP
rs1024957007 1186 dbSNP
rs937582920 1189 dbSNP
rs1054006013 1190 dbSNP
rs927515680 1191 dbSNP
rs1458643404 1192 dbSNP
rs1412369071 1194 dbSNP
rs558970086 1195 dbSNP
rs905032690 1200 dbSNP
rs982104222 1200 dbSNP
rs973711540 1203 dbSNP
rs1280461969 1204 dbSNP
rs945801350 1206 dbSNP
rs1194870178 1207 dbSNP
rs545762704 1210 dbSNP
rs1369264930 1213 dbSNP
rs576796560 1219 dbSNP
rs982491601 1221 dbSNP
rs1210146399 1222 dbSNP
rs1256245314 1227 dbSNP
rs987092374 1229 dbSNP
rs1195833589 1231 dbSNP
rs1424068638 1235 dbSNP
rs761641598 1240 dbSNP
rs1165957129 1244 dbSNP
rs1417579876 1245 dbSNP
rs1416413426 1255 dbSNP
rs921856479 1259 dbSNP
rs1374974908 1262 dbSNP
rs1413456343 1262 dbSNP
rs1300658113 1263 dbSNP
rs556801952 1264 dbSNP
rs963196054 1270 dbSNP
rs1268808680 1272 dbSNP
rs1191325215 1274 dbSNP
rs1029302150 1275 dbSNP
rs1278978690 1276 dbSNP
rs879514501 1277 dbSNP
rs1218170039 1278 dbSNP
rs899525894 1281 dbSNP
rs1018600639 1287 dbSNP
rs970835116 1292 dbSNP
rs1190713671 1293 dbSNP
rs776198960 1295 dbSNP
rs1000106520 1301 dbSNP
rs528977754 1310 dbSNP
rs1394549422 1311 dbSNP
rs1432869148 1314 dbSNP
rs1160545494 1315 dbSNP
rs895106551 1317 dbSNP
rs1382184828 1321 dbSNP
rs1032612881 1322 dbSNP
rs139795017 1326 dbSNP
rs1001086196 1328 dbSNP
rs1041537864 1335 dbSNP
rs1262838314 1336 dbSNP
rs757997462 1343 dbSNP
rs946105271 1343 dbSNP
rs895920633 1344 dbSNP
rs554616045 1345 dbSNP
rs1260838521 1352 dbSNP
rs768344258 1361 dbSNP
rs538971472 1362 dbSNP
rs1269183123 1373 dbSNP
rs565699641 1384 dbSNP
rs1302222249 1386 dbSNP
rs1192774685 1392 dbSNP
rs1051424435 1398 dbSNP
rs551753580 1399 dbSNP
rs1364498646 1401 dbSNP
rs1453658766 1402 dbSNP
rs931669612 1403 dbSNP
rs1393523191 1405 dbSNP
rs1462242008 1406 dbSNP
rs571805233 1412 dbSNP
rs1368290174 1417 dbSNP
rs1448588183 1420 dbSNP
rs1334715482 1424 dbSNP
rs921573765 1424 dbSNP
rs1236782404 1431 dbSNP
rs1267070478 1432 dbSNP
rs1363067698 1433 dbSNP
rs973323262 1434 dbSNP
rs538589151 1439 dbSNP
rs1437112153 1443 dbSNP
rs1197839015 1445 dbSNP
rs983297653 1446 dbSNP
rs375887981 1447 dbSNP
rs970932286 1450 dbSNP
rs1389102310 1451 dbSNP
rs918007856 1454 dbSNP
rs1038358189 1456 dbSNP
rs1164624851 1459 dbSNP
rs1392805309 1460 dbSNP
rs1466849813 1469 dbSNP
rs73943606 1475 dbSNP
rs115612754 1480 dbSNP
rs1389115042 1483 dbSNP
rs71332974 1488 dbSNP
rs1176293304 1489 dbSNP
rs983633378 1489 dbSNP
rs951087809 1491 dbSNP
rs1291186098 1492 dbSNP
rs922327670 1494 dbSNP
rs976561294 1495 dbSNP
rs1021592211 1498 dbSNP
rs1245606097 1499 dbSNP
rs1194114892 1503 dbSNP
rs752185522 1511 dbSNP
rs1008400615 1518 dbSNP
rs1187947076 1521 dbSNP
rs891266668 1521 dbSNP
rs780167050 1522 dbSNP
rs964046710 1522 dbSNP
rs1171573823 1534 dbSNP
rs1051475462 1536 dbSNP
rs1017940990 1540 dbSNP
rs1256057230 1546 dbSNP
rs1000034897 1547 dbSNP
rs995869661 1549 dbSNP
rs1375573188 1557 dbSNP
rs529862521 1564 dbSNP
rs968617589 1565 dbSNP
rs1020049828 1566 dbSNP
rs1342307110 1567 dbSNP
rs900201408 1571 dbSNP
rs1347543861 1574 dbSNP
rs1010004593 1578 dbSNP
rs1256840528 1582 dbSNP
rs895676703 1583 dbSNP
rs1057461161 1589 dbSNP
rs941975901 1594 dbSNP
rs1001668316 1596 dbSNP
rs1348771019 1601 dbSNP
rs1210254292 1602 dbSNP
rs560909169 1602 dbSNP
rs1340150340 1603 dbSNP
rs1487147885 1603 dbSNP
rs1187430847 1605 dbSNP
rs1426343806 1607 dbSNP
rs907792713 1607 dbSNP
rs1175187318 1608 dbSNP
rs1048066004 1609 dbSNP
rs1044964075 1611 dbSNP
rs1346855134 1611 dbSNP
rs917727348 1611 dbSNP
rs949264904 1611 dbSNP
rs949302869 1613 dbSNP
rs1365912349 1614 dbSNP
rs397962132 1614 dbSNP
rs1233590639 1615 dbSNP
rs959424793 1616 dbSNP
rs1278323073 1617 dbSNP
rs1319218983 1618 dbSNP
rs1217192013 1619 dbSNP
rs925311037 1619 dbSNP
rs1333402929 1623 dbSNP
rs1394111280 1634 dbSNP
rs1158386367 1635 dbSNP
rs1191175653 1635 dbSNP
rs1253187859 1635 dbSNP
rs1326353927 1635 dbSNP
rs1335714877 1635 dbSNP
rs1343367253 1635 dbSNP
rs1401206995 1635 dbSNP
rs1453453516 1635 dbSNP
rs1462764444 1635 dbSNP
rs574506165 1635 dbSNP
rs758816579 1635 dbSNP
rs979447730 1635 dbSNP
rs1211503429 1636 dbSNP
rs1467738401 1636 dbSNP
rs1404029909 1642 dbSNP
rs1303081700 1643 dbSNP
rs866715581 1646 dbSNP
rs1176133975 1647 dbSNP
rs1405633913 1647 dbSNP
rs1476163237 1653 dbSNP
rs1165336069 1656 dbSNP
rs1393518045 1656 dbSNP
rs1461107221 1661 dbSNP
rs967076145 1667 dbSNP
rs1356507982 1668 dbSNP
rs1428633782 1670 dbSNP
rs1442960097 1670 dbSNP
rs1021228380 1675 dbSNP
rs547898529 1675 dbSNP
rs1349142543 1676 dbSNP
rs905822799 1678 dbSNP
rs1008869144 1691 dbSNP
rs527780569 1696 dbSNP
rs145935609 1698 dbSNP
rs545378409 1708 dbSNP
rs1231855139 1709 dbSNP
rs1170008333 1711 dbSNP
rs771579565 1713 dbSNP
rs908144094 1714 dbSNP
rs1028431164 1718 dbSNP
rs995923491 1721 dbSNP
rs900253623 1723 dbSNP
rs1048032343 1730 dbSNP
rs1186000918 1731 dbSNP
rs1416889687 1734 dbSNP
rs749765600 1736 dbSNP
rs73943605 1739 dbSNP
rs1421867361 1744 dbSNP
rs185160868 1746 dbSNP
rs963836043 1748 dbSNP
rs546926737 1753 dbSNP
rs200126007 1756 dbSNP
rs896342648 1757 dbSNP
rs866717315 1759 dbSNP
rs200514317 1762 dbSNP
rs938109326 1763 dbSNP
rs866423037 1765 dbSNP
rs778461185 1770 dbSNP
rs528546563 1776 dbSNP
rs1213675822 1778 dbSNP
rs1349505438 1790 dbSNP
rs753400960 1790 dbSNP
rs1283556800 1794 dbSNP
rs1484668546 1796 dbSNP
rs1195026945 1802 dbSNP
rs1242448501 1803 dbSNP
rs542869565 1806 dbSNP
rs574211910 1814 dbSNP
rs960143616 1815 dbSNP
rs955619704 1816 dbSNP
rs1174359301 1819 dbSNP
rs1028482169 1822 dbSNP
rs1309441248 1823 dbSNP
rs554054048 1823 dbSNP
rs567457812 1825 dbSNP
rs867454780 1826 dbSNP
rs905960871 1833 dbSNP
rs1389322916 1836 dbSNP
rs1320663955 1840 dbSNP
rs1429583066 1843 dbSNP
rs975561145 1846 dbSNP
rs1372741084 1848 dbSNP
rs1234333171 1849 dbSNP
rs1474019495 1853 dbSNP
rs962811846 1856 dbSNP
rs1016034109 1860 dbSNP
rs1284692168 1876 dbSNP
rs1446148032 1877 dbSNP
rs770104762 1891 dbSNP
rs1246372980 1895 dbSNP
rs534765872 1896 dbSNP
rs572036553 1897 dbSNP
rs1394604225 1901 dbSNP
rs1464970014 1902 dbSNP
rs1160870033 1912 dbSNP
rs182955663 1912 dbSNP
rs1254291342 1913 dbSNP
rs144004278 1917 dbSNP
rs1026380064 1920 dbSNP
rs569637702 1921 dbSNP
rs1013541205 1924 dbSNP
rs34001398 1929 dbSNP
rs781335232 1930 dbSNP
rs1328922833 1936 dbSNP
rs1240570552 1937 dbSNP
rs901973961 1938 dbSNP
rs1349902770 1940 dbSNP
rs1039216089 1943 dbSNP
rs772941240 1946 dbSNP
rs942417970 1949 dbSNP
rs755123897 1970 dbSNP
rs747102993 1976 dbSNP
rs1206541415 1978 dbSNP
rs540088063 1985 dbSNP
rs1469973221 1988 dbSNP
rs1055013041 1996 dbSNP
rs937847712 2004 dbSNP
rs978508501 2008 dbSNP
rs1431442302 2012 dbSNP
rs1184094405 2018 dbSNP
rs947044774 2018 dbSNP
rs1364828962 2021 dbSNP
rs1470110971 2025 dbSNP
rs536133133 2034 dbSNP
rs1420550802 2035 dbSNP
rs1272175951 2038 dbSNP
rs571152328 2039 dbSNP
rs1043848144 2040 dbSNP
rs551332827 2042 dbSNP
rs1335059021 2043 dbSNP
rs1227604764 2054 dbSNP
rs913943676 2055 dbSNP
rs1348354144 2058 dbSNP
rs987199058 2067 dbSNP
rs1265023381 2068 dbSNP
rs959994281 2074 dbSNP
rs1197599158 2080 dbSNP
rs1251398465 2085 dbSNP
rs1035905772 2092 dbSNP
rs191912876 2093 dbSNP
rs34671296 2094 dbSNP
rs962863223 2097 dbSNP
rs1048954 2106 dbSNP
rs1016344764 2107 dbSNP
rs527792309 2109 dbSNP
rs1406582114 2119 dbSNP
rs1392144959 2120 dbSNP
rs1463234617 2120 dbSNP
rs1395213446 2121 dbSNP
rs1407914372 2125 dbSNP
rs1006348564 2132 dbSNP
rs1356025336 2143 dbSNP
rs886400199 2153 dbSNP
rs1310351226 2158 dbSNP
rs1320118467 2161 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gacacccucggugucCCACGAc 5'
                         |||||| 
Target 5' ---------------GGUGCUg 3'
1 - 7
2
miRNA  3' gacacccuCGGUGUCCCacgac 5'
                  ||| | |||     
Target 5' gcuauccuGCCUCUGGGcca-- 3'
18 - 37
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000253048.5 | 3UTR | GGUGCUGGGGGAGGCCUGCUAUCCUGCCUCUGGGCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
88 hsa-miR-6871-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061678 BTG2 BTG anti-proliferation factor 2 2 4
MIRT116181 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT150139 MIDN midnolin 2 2
MIRT197058 NKIRAS2 NFKB inhibitor interacting Ras like 2 2 2
MIRT225108 GOLGA7 golgin A7 2 2
MIRT376288 CALM3 calmodulin 3 2 2
MIRT454810 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT464228 VEGFA vascular endothelial growth factor A 2 6
MIRT466961 STAT3 signal transducer and activator of transcription 3 2 2
MIRT468219 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT472460 NASP nuclear autoantigenic sperm protein 2 2
MIRT474203 LEPRE1 prolyl 3-hydroxylase 1 1 1
MIRT475836 HDGF heparin binding growth factor 2 4
MIRT478667 CTC1 CST telomere replication complex component 1 2 14
MIRT478707 CSRNP2 cysteine and serine rich nuclear protein 2 2 2
MIRT478982 COMMD2 COMM domain containing 2 2 2
MIRT479693 CCNT2 cyclin T2 2 6
MIRT488440 ULBP2 UL16 binding protein 2 2 2
MIRT492511 RAET1L retinoic acid early transcript 1L 2 2
MIRT492975 NCS1 neuronal calcium sensor 1 2 2
MIRT494158 COL4A1 collagen type IV alpha 1 chain 2 6
MIRT495934 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496210 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT496356 PPY pancreatic polypeptide 2 2
MIRT496385 ZC3H6 zinc finger CCCH-type containing 6 2 2
MIRT496463 DCTN5 dynactin subunit 5 2 2
MIRT497642 GLDN gliomedin 2 2
MIRT498496 FRK fyn related Src family tyrosine kinase 2 2
MIRT501928 MCL1 MCL1, BCL2 family apoptosis regulator 2 8
MIRT513286 PDPK1 3-phosphoinositide dependent protein kinase 1 2 2
MIRT514767 RBM4B RNA binding motif protein 4B 2 2
MIRT514916 MDM2 MDM2 proto-oncogene 2 6
MIRT515669 LRRC27 leucine rich repeat containing 27 2 2
MIRT520367 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT523960 DYNLT1 dynein light chain Tctex-type 1 2 4
MIRT526859 KIFC1 kinesin family member C1 2 2
MIRT527673 CASP8 caspase 8 2 2
MIRT527828 TMEM74B transmembrane protein 74B 2 2
MIRT529553 EI24 EI24, autophagy associated transmembrane protein 2 2
MIRT530547 SYNPO synaptopodin 2 2
MIRT531725 TARS threonyl-tRNA synthetase 2 2
MIRT533340 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT533620 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT537226 GAN gigaxonin 2 2
MIRT544430 ZNF460 zinc finger protein 460 2 4
MIRT546905 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT547102 PLAG1 PLAG1 zinc finger 2 2
MIRT547820 ISG20L2 interferon stimulated exonuclease gene 20 like 2 2 2
MIRT548236 FEM1B fem-1 homolog B 2 2
MIRT550034 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT554337 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 4
MIRT565483 SPRTN SprT-like N-terminal domain 2 2
MIRT568200 CBX6 chromobox 6 2 2
MIRT569754 C2orf71 chromosome 2 open reading frame 71 2 2
MIRT571369 ZNF45 zinc finger protein 45 2 2
MIRT609886 CLASP1 cytoplasmic linker associated protein 1 2 4
MIRT640543 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT640885 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT643494 LRCH3 leucine rich repeats and calponin homology domain containing 3 2 2
MIRT643627 YY2 YY2 transcription factor 2 2
MIRT644384 ZNF286A zinc finger protein 286A 2 2
MIRT646126 SLC26A9 solute carrier family 26 member 9 2 2
MIRT655939 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656057 MYLK4 myosin light chain kinase family member 4 2 2
MIRT658767 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT661583 EPHX2 epoxide hydrolase 2 2 2
MIRT664285 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT689391 ZNF850 zinc finger protein 850 2 2
MIRT694530 TRIM72 tripartite motif containing 72 2 2
MIRT694626 ZFPM1 zinc finger protein, FOG family member 1 2 2
MIRT695133 PRY2 PTPN13-like, Y-linked 2 2 2
MIRT695150 PRY PTPN13-like, Y-linked 2 2
MIRT697468 ZC3H4 zinc finger CCCH-type containing 4 2 2
MIRT701919 MLXIP MLX interacting protein 2 2
MIRT704548 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT704791 CDK6 cyclin dependent kinase 6 2 2
MIRT705696 ANKRD13A ankyrin repeat domain 13A 2 2
MIRT707992 OTUD4 OTU deubiquitinase 4 2 2
MIRT708739 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT713401 FAM179A TOG array regulator of axonemal microtubules 2 2 2
MIRT713846 FAM3D family with sequence similarity 3 member D 2 2
MIRT716998 ARL6IP4 ADP ribosylation factor like GTPase 6 interacting protein 4 2 2
MIRT718511 DIRAS1 DIRAS family GTPase 1 2 2
MIRT718698 BTBD9 BTB domain containing 9 2 2
MIRT719578 TYRO3 TYRO3 protein tyrosine kinase 2 2
MIRT720892 CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 2 2
MIRT722633 C8A complement C8 alpha chain 2 2
MIRT723333 DGAT1 diacylglycerol O-acyltransferase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6871-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6871-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6871-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6871-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)

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