pre-miRNA Information
pre-miRNA hsa-mir-4742   
Genomic Coordinates chr1: 224398227 - 224398311
Description Homo sapiens miR-4742 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4742-5p
Sequence 1| UCAGGCAAAGGGAUAUUUACAGA |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1234293681 4 dbSNP
rs778464201 9 dbSNP
rs758952505 12 dbSNP
rs753463665 16 dbSNP
rs765920862 18 dbSNP
rs1205603801 20 dbSNP
rs756994761 21 dbSNP
Putative Targets

Gene Information
Gene Symbol TMEM248   
Synonyms C7orf42
Description transmembrane protein 248
Transcript NM_017994   
Expression
Putative miRNA Targets on TMEM248
3'UTR of TMEM248
(miRNA target sites are highlighted)
>TMEM248|NM_017994|3'UTR
   1 TTCCACAGCTCCTTGTTTTTTGAGAGAGACTGAGAGAACCATAATCCTTGCCTGCTGAACCCAGCCTGGGCCTGGATGCT
  81 CTGTGAATACATTATCTTGCGATGTTGGGTTATTCCAGCCAAAGACATTTCAAGTGCCTGTAACTGATTTGTACATATTT
 161 ATAAAAATCTATTCAGAAATTGGTCCAATAATGCACGTGCTTTGCCCTGGGTACAGCCAGAGCCCTTCAACCCCACCTTG
 241 GACTTGAGGACCTACCTGATGGGACGTTTCCACGTGTCTCTAGAGAAGGATTCCTGGATCTAGCTGGTCACGACGATGTT
 321 TTCACCAAGGTCACAGGAGCATTGCGTCGCTGATGGGGTTGAAGTTTGGTTTGGTTCTTGTTTCAGCCCAATATGTAGAG
 401 AACATTTGAAACAGTCTGCACCTTTGATACGGTATTGCATTTCCAAAGCCACCAATCCATTTTGTGGATTTTATGTGTTT
 481 GTGGCTTAATAATCATAGTAACAACAATAATACCTTTTTCTCCATTTTGCTTGCAGGAAACATACCTTAAGTTTTTTTTG
 561 TTTTGTTTTTGTTTTTTTGTTTTTTGTTTTCCTTTATGAAGAAAAAATAAAATAGTCACATTTTAATACTACTCTAGTTA
 641 GGACAGACTTGTGCTTTTATCCTGACTAAAAAGTTAAATATTTAAGTCACATACATGGTAAAGATCTAAGTTTCATTTTC
 721 CACATGGATGACCAGGAACCTGGTCTTGTTGGAGCTGGCATAGGAGGTTCTACTGTCTTGTCGTCCACTCTTGTCCCTCC
 801 CTTCTGTTATCAAAGTTAAAGCGCCTCTTCACTCAAAAGGGCTTCAAAATGTAAATGGCTCTAGAGTTAGAGTGACTGTT
 881 TGCTCTTCTGCTTTCTGGAATGCAGATGACAGTATGGAAAGAAAGAATAATGATTCTATCTAATAGGAAAGGATTTCTTC
 961 TTTCTTTTTTAAAGAGTGGGTGGATTTTCTCCCTTTTGTTTTGCTTTTATTTTCATGCTACTAACATATCTTCAGAAGGA
1041 AATGGCAACTAGTAGATCAGTAAAATTACGAAAACGATGCCTGCAAAATTTGAAGGAATGCAATTCTGATTTGCCATTTA
1121 TCAGGGAAAACTGAAAGCATTTTTCTTATAACTTTTTTTCTTTTTCTTTTTTTTTGGAGGGGGGAGGCAGGGTCTTGCTC
1201 TGTCCCTCAGGCTGGAGCTTAGCTCAGTGCAGCCTCCAACTCCTGGGCTCAAGCAATCCTCCCACTTTAGCCTCCTGAGT
1281 AGCTGGGACTACAGGCGTGTGCCAGCGCGCCTGGCTAATTTTAAAATTTTTTTGTAGAGACAGAGTCTCCCTCTGTTGCC
1361 CAGGCTGGTCTGGAACTCCTAGCTTCAAATGATCCTCTCACCTCGGCCTCCCAAAATCCTGGGATTCCAGGCGTCAGCCA
1441 CTGCTCTCGGCCCTCTTACACCATTTTGTTTGATTGTCTAGTCCCTGTTTCTTTTTCTTTCTAATCCTTATTCATTTAAG
1521 CAAAACCATACATTATCTTTTCCAGTCCTTTCTTGTATTCTTACTGTTTTTTTAAAATAACTTTTTGCCTTAATAGCTCA
1601 TTGTCACTAATAACTTCTGTGTTCTCCCAGGCAGTGTTATAACAGAAGGGCAATGAAAACATTGGACATGACCATGAGTG
1681 CTTCCTTTCCTTAACTCTAGGTTTGTAGTCTGTTTTAAATTAGGATTAGTTCCTGCATTCTGAAATACATTGGCCTAGAA
1761 CATTTTATCCCAGGCATTTTTGAATAGAAAACAGTTGCGTGCTTTTATTGAAGATTGTTAAAATAATCACCATAGTAACT
1841 TGATATGTTAGTATTTTTCTTTTTCCTTTTAGTATGTTTCAAGTGCAGTAATCGTACTTGTCTATCCAGTTTCTATGTAT
1921 GATACGAGTTGCTTACACGATGCATGGCTAACTTGTTAATTTAGTTTTCTCCTTAGAGACTTTGAGACCCTTAAGAGACA
2001 AGATTGAGAAAGAGCCATGTGGCTTGGCTCTAGAAACGTCATTATCATTAGGACCATCAGATTTTAGATTAAGCTGCTAT
2081 TGAATTAATAAAATCCCAATGAAGCAGAGTTATAGGGATAGATTTATAGCTGGCAGAGTGGTATCAAAGGAGAAAAACAG
2161 TGAAAAAGCCAATTTCACTGGTTCGTTCAATCCAGCTTGTTGCTAATATTAGTTACCCTTGTTTTAATGACAGAGAGTGG
2241 CTGGAATCTGTAGCTAGGGGAGGGGCAACACTGTTAGATGTGAGGAAAGGAAGTGCCAAAAATGCCTGGACAGATGGCTT
2321 GTCCCAAGGCCAGGACACACACTTTAAAATCCAACATTCACCTAAGCAAGTAATTCTTAAAGATCTTACAGAAACGCAGA
2401 GTCAATCAGGTTTATAAAGGAAGGCTGAGGGGAGAGAGGAGGCCTGGGGGCCTGGACGAAGAGGCCTAGGACCTGAAGAG
2481 ACTCCAGCGAGTCTCGGGAAGCCCAGGGGACCTGTCACCATCTGGGCACTTCCCAGGCTCAATGCTCAGCCAGAGTTTGC
2561 TGGTGGACCTCAGGATTCGAAGTGTGCAACAGACGGAGTGCGCTTGCTGTTCAGGGCGGCCCCGTGCAGGAGCACCAGCT
2641 CACCCTCAGGCATCTCGGACTGGAGGGCCAGCAGAAGGTCAGCAACTTACTCTTAAAACGATTGTTTCGGATCATATTGA
2721 TCTCTTTCCTTTTTCCTTTTGTCCTTTCACTGTATGACTTGAATCAGTTTTGATTCTATTTGTAAGTGTTTCTTGTCGTG
2801 AGGCACCTGCCATGTCTGTTGCGTTTTCCTCGGCAGCGTGTAGGGCTTCAGCTTCCTGGGTTTTCACCCTTCCTGCAGGC
2881 ACTGTGGGGTCCTGAGGGCCAGTGGGTCCATTTCACCTCTTGCTGCATGATGGTCAGTAGCTGATCTGTTATGGCATTCA
2961 CTTCCAGATTAATTTTCCGTGTTTGAAGTATGTGCATATGTGCTTTACAGAATAAAACATCTGAATTTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agacauuUAUAGGGAAACGGACu 5'
                 ||| :|| ||||||| 
Target 5' gagaaccATAATCC-TTGCCTGc 3'
34 - 55 155.00 -13.30
2
miRNA  3' agacaUUUAUAGGGAAACGGAcu 5'
               ||||| |::|||||||  
Target 5' ttttaAAATAACTTTTTGCCTta 3'
1570 - 1592 154.00 -12.90
3
miRNA  3' agacauuuAUAGG-GAAACGGACu 5'
                  | ||| :|||||:|| 
Target 5' taccttttTCTCCATTTTGCTTGc 3'
511 - 534 139.00 -10.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19728874 14 COSMIC
COSN30509486 19 COSMIC
COSN30526140 41 COSMIC
COSN30171352 56 COSMIC
COSN30192754 76 COSMIC
COSN30490758 77 COSMIC
COSN30538823 82 COSMIC
COSN30151373 86 COSMIC
COSN31509007 97 COSMIC
COSN31596864 102 COSMIC
COSN31503208 126 COSMIC
COSN30466949 170 COSMIC
COSN31491969 188 COSMIC
COSN6889037 198 COSMIC
COSN9769526 275 COSMIC
COSN31483299 316 COSMIC
COSN26678372 438 COSMIC
COSN28688680 456 COSMIC
COSN31545795 579 COSMIC
COSN31551126 593 COSMIC
COSN18953204 835 COSMIC
COSN32061971 1176 COSMIC
COSN31532472 1468 COSMIC
COSN31611310 1477 COSMIC
COSN6889038 1503 COSMIC
COSN31778562 1569 COSMIC
COSN31520716 1678 COSMIC
COSN20104312 1699 COSMIC
COSN24506235 1756 COSMIC
COSN21549028 1801 COSMIC
COSN14586796 2232 COSMIC
COSN29338316 2313 COSMIC
COSN5661602 2608 COSMIC
COSN30175207 2677 COSMIC
COSN31593921 2800 COSMIC
COSN9506444 2853 COSMIC
COSN31486528 2930 COSMIC
rs4718428 938 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs781005802 4 dbSNP
rs748432037 8 dbSNP
rs376802951 9 dbSNP
rs369682030 10 dbSNP
rs1363123363 17 dbSNP
rs1047801062 20 dbSNP
rs766813091 22 dbSNP
rs545249952 27 dbSNP
rs199710120 29 dbSNP
rs1053506694 49 dbSNP
rs895798517 51 dbSNP
rs1382301283 67 dbSNP
rs942195323 76 dbSNP
rs1179394214 78 dbSNP
rs1418494893 82 dbSNP
rs1039622714 83 dbSNP
rs1163213015 92 dbSNP
rs575816017 100 dbSNP
rs1364039861 101 dbSNP
rs1407440836 106 dbSNP
rs544203656 110 dbSNP
rs1354449817 114 dbSNP
rs1238751498 145 dbSNP
rs1332217406 162 dbSNP
rs997770150 170 dbSNP
rs879079075 174 dbSNP
rs1050715701 176 dbSNP
rs191949278 188 dbSNP
rs998559585 189 dbSNP
rs1382504311 197 dbSNP
rs1031399812 198 dbSNP
rs529707393 200 dbSNP
rs1156647114 205 dbSNP
rs149129376 207 dbSNP
rs1228671977 211 dbSNP
rs1272102510 217 dbSNP
rs1479375190 228 dbSNP
rs1268349393 231 dbSNP
rs183013676 235 dbSNP
rs1200498252 240 dbSNP
rs532365136 243 dbSNP
rs971855375 247 dbSNP
rs919023324 257 dbSNP
rs1324745910 258 dbSNP
rs954390307 261 dbSNP
rs781753809 266 dbSNP
rs1183147041 267 dbSNP
rs1023240456 268 dbSNP
rs1323447457 274 dbSNP
rs910467698 274 dbSNP
rs552056902 275 dbSNP
rs1315810002 281 dbSNP
rs1042884472 282 dbSNP
rs1406542861 287 dbSNP
rs1473929499 288 dbSNP
rs1468219831 297 dbSNP
rs1428488685 306 dbSNP
rs76231377 312 dbSNP
rs928591007 313 dbSNP
rs187605240 315 dbSNP
rs758528379 316 dbSNP
rs983882931 326 dbSNP
rs796976621 329 dbSNP
rs1202159792 341 dbSNP
rs1461305703 342 dbSNP
rs1400312930 343 dbSNP
rs770289705 346 dbSNP
rs548463247 347 dbSNP
rs565899672 349 dbSNP
rs766313072 350 dbSNP
rs1226317787 351 dbSNP
rs1383047482 356 dbSNP
rs1245131713 361 dbSNP
rs895926216 374 dbSNP
rs950080353 382 dbSNP
rs1329479729 390 dbSNP
rs1411538208 392 dbSNP
rs113938327 395 dbSNP
rs933509488 396 dbSNP
rs1167406433 398 dbSNP
rs749540083 407 dbSNP
rs1337238179 418 dbSNP
rs902790950 420 dbSNP
rs148319644 431 dbSNP
rs115464709 432 dbSNP
rs1203096981 433 dbSNP
rs1207246166 438 dbSNP
rs1017032240 445 dbSNP
rs1270338439 449 dbSNP
rs1203782898 450 dbSNP
rs1359761258 452 dbSNP
rs1254226038 453 dbSNP
rs539238536 455 dbSNP
rs1378191005 457 dbSNP
rs892864443 458 dbSNP
rs1279853618 465 dbSNP
rs1276270541 466 dbSNP
rs1444373997 469 dbSNP
rs1404980 480 dbSNP
rs994770910 499 dbSNP
rs1425349128 500 dbSNP
rs1022764510 503 dbSNP
rs575896261 504 dbSNP
rs1241838229 508 dbSNP
rs1161931958 512 dbSNP
rs954655842 514 dbSNP
rs1409256603 516 dbSNP
rs544623224 530 dbSNP
rs1035554960 531 dbSNP
rs1017288486 539 dbSNP
rs1232777603 544 dbSNP
rs1173374820 545 dbSNP
rs546750527 552 dbSNP
rs950666438 552 dbSNP
rs983446673 556 dbSNP
rs1469793286 561 dbSNP
rs1293250027 564 dbSNP
rs1170277038 566 dbSNP
rs1219804443 566 dbSNP
rs1403772166 571 dbSNP
rs1225238578 572 dbSNP
rs1284764999 572 dbSNP
rs978658460 577 dbSNP
rs1287686054 580 dbSNP
rs555289829 587 dbSNP
rs1016678875 591 dbSNP
rs1317227507 592 dbSNP
rs1338078960 593 dbSNP
rs879140288 609 dbSNP
rs1405432803 614 dbSNP
rs866801901 616 dbSNP
rs1301363993 617 dbSNP
rs142214256 620 dbSNP
rs540211695 623 dbSNP
rs922050065 634 dbSNP
rs3800818 635 dbSNP
rs989092414 638 dbSNP
rs1399352033 639 dbSNP
rs1177802916 643 dbSNP
rs1221653246 643 dbSNP
rs532073711 667 dbSNP
rs987666305 673 dbSNP
rs545983513 674 dbSNP
rs950187334 679 dbSNP
rs1044344118 681 dbSNP
rs1242311911 683 dbSNP
rs935601462 692 dbSNP
rs562589483 696 dbSNP
rs1487471370 711 dbSNP
rs529067125 718 dbSNP
rs548113734 725 dbSNP
rs1264410848 730 dbSNP
rs1325570205 732 dbSNP
rs1480379192 735 dbSNP
rs1197413555 737 dbSNP
rs947107406 749 dbSNP
rs760348828 752 dbSNP
rs1193005751 776 dbSNP
rs1038574459 783 dbSNP
rs1428820172 783 dbSNP
rs897434654 784 dbSNP
rs1044124062 787 dbSNP
rs994344192 797 dbSNP
rs1157553122 823 dbSNP
rs192419402 824 dbSNP
rs753040488 828 dbSNP
rs1035504323 829 dbSNP
rs1432128348 832 dbSNP
rs1419550712 853 dbSNP
rs1187918880 856 dbSNP
rs886316279 860 dbSNP
rs1247246864 862 dbSNP
rs1204030230 864 dbSNP
rs1298545553 871 dbSNP
rs753683928 874 dbSNP
rs111304412 879 dbSNP
rs963705638 883 dbSNP
rs756872748 886 dbSNP
rs964361510 891 dbSNP
rs1029068904 892 dbSNP
rs1213101867 893 dbSNP
rs1032928687 896 dbSNP
rs1316230307 906 dbSNP
rs1454888553 907 dbSNP
rs1404317489 908 dbSNP
rs954788772 910 dbSNP
rs1302803160 932 dbSNP
rs200597130 934 dbSNP
rs66777705 935 dbSNP
rs1354620583 937 dbSNP
rs4718428 938 dbSNP
rs1183776421 941 dbSNP
rs1279101017 942 dbSNP
rs1446247202 945 dbSNP
rs1240977094 951 dbSNP
rs112885645 952 dbSNP
rs917085137 961 dbSNP
rs1351759760 965 dbSNP
rs1219127579 973 dbSNP
rs1287141741 981 dbSNP
rs1253205379 983 dbSNP
rs1490295139 992 dbSNP
rs1208518040 994 dbSNP
rs950138745 994 dbSNP
rs1292820309 1002 dbSNP
rs1248391786 1004 dbSNP
rs1381063582 1006 dbSNP
rs185739840 1014 dbSNP
rs1392553093 1015 dbSNP
rs1434310570 1018 dbSNP
rs188999606 1021 dbSNP
rs915536844 1024 dbSNP
rs941355317 1025 dbSNP
rs138783912 1029 dbSNP
rs781488519 1036 dbSNP
rs1366567418 1037 dbSNP
rs1186563131 1045 dbSNP
rs748717856 1046 dbSNP
rs74863047 1049 dbSNP
rs778257500 1054 dbSNP
rs1179876999 1065 dbSNP
rs868223260 1070 dbSNP
rs537768170 1071 dbSNP
rs749706375 1077 dbSNP
rs1225016408 1078 dbSNP
rs1295134787 1081 dbSNP
rs1391351399 1082 dbSNP
rs1357551595 1083 dbSNP
rs1390799935 1087 dbSNP
rs1007093538 1101 dbSNP
rs1038794875 1121 dbSNP
rs555328884 1124 dbSNP
rs1374807536 1127 dbSNP
rs377702252 1133 dbSNP
rs1349339610 1149 dbSNP
rs540248045 1150 dbSNP
rs1406451186 1153 dbSNP
rs558302019 1153 dbSNP
rs1162475859 1157 dbSNP
rs1454150372 1167 dbSNP
rs369228029 1167 dbSNP
rs771272998 1167 dbSNP
rs1450123424 1169 dbSNP
rs899110614 1173 dbSNP
rs1267653434 1175 dbSNP
rs1487061222 1179 dbSNP
rs971621876 1179 dbSNP
rs4718429 1180 dbSNP
rs572623090 1181 dbSNP
rs192719556 1182 dbSNP
rs142896553 1185 dbSNP
rs772196061 1186 dbSNP
rs1429867984 1188 dbSNP
rs1178446709 1200 dbSNP
rs1477093029 1203 dbSNP
rs1377080395 1204 dbSNP
rs1297015524 1206 dbSNP
rs957090618 1209 dbSNP
rs1430514715 1212 dbSNP
rs113271892 1227 dbSNP
rs374122854 1228 dbSNP
rs1421750570 1237 dbSNP
rs969681171 1240 dbSNP
rs1265575918 1243 dbSNP
rs979697365 1244 dbSNP
rs1368879947 1257 dbSNP
rs1432493740 1266 dbSNP
rs188504561 1269 dbSNP
rs1342279162 1270 dbSNP
rs912848183 1272 dbSNP
rs942844014 1273 dbSNP
rs1327822082 1279 dbSNP
rs926968206 1293 dbSNP
rs1398131171 1297 dbSNP
rs938382568 1298 dbSNP
rs1039900246 1304 dbSNP
rs1338634787 1305 dbSNP
rs1056803973 1307 dbSNP
rs1449097308 1308 dbSNP
rs760586031 1309 dbSNP
rs940506029 1310 dbSNP
rs1037552540 1314 dbSNP
rs1054105603 1323 dbSNP
rs1388517438 1323 dbSNP
rs866624540 1324 dbSNP
rs1394547723 1327 dbSNP
rs1445642855 1338 dbSNP
rs762839569 1342 dbSNP
rs1186058664 1348 dbSNP
rs1442347940 1350 dbSNP
rs1315224935 1351 dbSNP
rs541598764 1358 dbSNP
rs1322719861 1359 dbSNP
rs1343623688 1362 dbSNP
rs1272064717 1367 dbSNP
rs150789844 1372 dbSNP
rs527543273 1373 dbSNP
rs1024632268 1374 dbSNP
rs199854015 1374 dbSNP
rs1320699115 1377 dbSNP
rs1198708472 1382 dbSNP
rs1236441038 1387 dbSNP
rs1411760137 1391 dbSNP
rs1168215796 1395 dbSNP
rs776406009 1395 dbSNP
rs761659208 1405 dbSNP
rs1001284603 1406 dbSNP
rs1256539249 1407 dbSNP
rs1008941688 1415 dbSNP
rs1034154107 1425 dbSNP
rs1031487557 1432 dbSNP
rs1427718818 1433 dbSNP
rs1168370375 1434 dbSNP
rs1483755905 1449 dbSNP
rs892582721 1449 dbSNP
rs1248897206 1450 dbSNP
rs1204083469 1453 dbSNP
rs1425685909 1460 dbSNP
rs1466120141 1462 dbSNP
rs556855250 1464 dbSNP
rs962738934 1472 dbSNP
rs1355329071 1475 dbSNP
rs1358686713 1481 dbSNP
rs1280089825 1485 dbSNP
rs1411524023 1492 dbSNP
rs974145939 1494 dbSNP
rs546594544 1496 dbSNP
rs1405845681 1503 dbSNP
rs1304818182 1507 dbSNP
rs1380259636 1509 dbSNP
rs1399774642 1515 dbSNP
rs1022481264 1516 dbSNP
rs1276761248 1519 dbSNP
rs918709325 1524 dbSNP
rs951452324 1529 dbSNP
rs1160800510 1543 dbSNP
rs970008974 1549 dbSNP
rs912767843 1556 dbSNP
rs1409201550 1560 dbSNP
rs1180795938 1565 dbSNP
rs566798388 1568 dbSNP
rs942940715 1575 dbSNP
rs1219828394 1578 dbSNP
rs532526062 1590 dbSNP
rs1450836455 1592 dbSNP
rs1284613714 1594 dbSNP
rs1035272661 1599 dbSNP
rs925461695 1610 dbSNP
rs936845239 1618 dbSNP
rs111742278 1620 dbSNP
rs796830782 1625 dbSNP
rs560412643 1626 dbSNP
rs569310514 1632 dbSNP
rs181303514 1635 dbSNP
rs1435938961 1636 dbSNP
rs1346225486 1640 dbSNP
rs1322952053 1642 dbSNP
rs1456159149 1648 dbSNP
rs907095016 1651 dbSNP
rs948514342 1654 dbSNP
rs1480491330 1655 dbSNP
rs750097614 1657 dbSNP
rs1189106244 1667 dbSNP
rs1477490463 1671 dbSNP
rs898321258 1675 dbSNP
rs973604192 1677 dbSNP
rs920449872 1689 dbSNP
rs931838482 1691 dbSNP
rs10623555 1695 dbSNP
rs397799825 1695 dbSNP
rs369655848 1696 dbSNP
rs1204152197 1698 dbSNP
rs376228203 1698 dbSNP
rs201900868 1700 dbSNP
rs869264182 1700 dbSNP
rs1424475606 1704 dbSNP
rs1299275365 1711 dbSNP
rs1218916880 1724 dbSNP
rs1050333132 1733 dbSNP
rs555165328 1751 dbSNP
rs951499929 1760 dbSNP
rs944679190 1761 dbSNP
rs1359948294 1771 dbSNP
rs878964161 1772 dbSNP
rs1337978162 1783 dbSNP
rs1052461411 1786 dbSNP
rs1467970647 1787 dbSNP
rs878888272 1789 dbSNP
rs1296708723 1793 dbSNP
rs879211201 1796 dbSNP
rs987174593 1798 dbSNP
rs76790718 1799 dbSNP
rs185786486 1800 dbSNP
rs975645550 1809 dbSNP
rs905364835 1816 dbSNP
rs1364798490 1822 dbSNP
rs1002349293 1828 dbSNP
rs554497670 1829 dbSNP
rs576798887 1831 dbSNP
rs1352486352 1846 dbSNP
rs1308111574 1850 dbSNP
rs1277063880 1858 dbSNP
rs1226385556 1859 dbSNP
rs1341905825 1865 dbSNP
rs1316165756 1866 dbSNP
rs1398367875 1868 dbSNP
rs111875640 1873 dbSNP
rs143966278 1875 dbSNP
rs575685268 1876 dbSNP
rs1370586835 1881 dbSNP
rs1170094132 1889 dbSNP
rs906895347 1894 dbSNP
rs1389385146 1895 dbSNP
rs962065008 1901 dbSNP
rs1165184622 1905 dbSNP
rs937030947 1906 dbSNP
rs1488501612 1911 dbSNP
rs1254031281 1914 dbSNP
rs973169918 1915 dbSNP
rs920378559 1917 dbSNP
rs1181162098 1920 dbSNP
rs1220650891 1922 dbSNP
rs931786107 1926 dbSNP
rs985993783 1929 dbSNP
rs1055630785 1932 dbSNP
rs189027545 1939 dbSNP
rs1478999446 1944 dbSNP
rs1341709555 1945 dbSNP
rs995708891 1953 dbSNP
rs1247403290 1956 dbSNP
rs201460599 1965 dbSNP
rs944626665 1974 dbSNP
rs1312666718 1976 dbSNP
rs112623865 1981 dbSNP
rs543109754 1991 dbSNP
rs1439277275 1995 dbSNP
rs1350642910 2004 dbSNP
rs1157109083 2005 dbSNP
rs561386045 2008 dbSNP
rs892456410 2011 dbSNP
rs946745100 2016 dbSNP
rs751076189 2017 dbSNP
rs1420698255 2024 dbSNP
rs1323392407 2028 dbSNP
rs1348635079 2038 dbSNP
rs1439283672 2039 dbSNP
rs1164010518 2041 dbSNP
rs1366432809 2041 dbSNP
rs773497158 2046 dbSNP
rs1002298769 2054 dbSNP
rs1180064945 2059 dbSNP
rs187429731 2071 dbSNP
rs1269894535 2074 dbSNP
rs928844940 2087 dbSNP
rs1215751321 2100 dbSNP
rs1487710190 2104 dbSNP
rs190609150 2105 dbSNP
rs1265218308 2119 dbSNP
rs1375546538 2121 dbSNP
rs1217219999 2127 dbSNP
rs763019940 2131 dbSNP
rs1331803048 2134 dbSNP
rs896701933 2144 dbSNP
rs1237432705 2147 dbSNP
rs1004475514 2153 dbSNP
rs1311004950 2153 dbSNP
rs1354051073 2154 dbSNP
rs111394313 2159 dbSNP
rs975443016 2161 dbSNP
rs1032591610 2164 dbSNP
rs1292725574 2179 dbSNP
rs1016294816 2180 dbSNP
rs1390712093 2182 dbSNP
rs961735396 2184 dbSNP
rs994935340 2185 dbSNP
rs766551090 2191 dbSNP
rs540965094 2206 dbSNP
rs1027393365 2209 dbSNP
rs914085298 2213 dbSNP
rs967509048 2216 dbSNP
rs370039045 2221 dbSNP
rs1466492190 2225 dbSNP
rs1266817427 2229 dbSNP
rs1208578736 2232 dbSNP
rs1327880056 2232 dbSNP
rs953122763 2244 dbSNP
rs202121315 2246 dbSNP
rs1235043642 2249 dbSNP
rs182850753 2251 dbSNP
rs1470668827 2254 dbSNP
rs1163019880 2261 dbSNP
rs1053401248 2262 dbSNP
rs558708828 2263 dbSNP
rs1412116066 2265 dbSNP
rs532426558 2266 dbSNP
rs919809697 2269 dbSNP
rs1456583650 2283 dbSNP
rs1206358820 2288 dbSNP
rs1398836721 2289 dbSNP
rs751581644 2290 dbSNP
rs1443925929 2300 dbSNP
rs911732487 2307 dbSNP
rs1332855328 2316 dbSNP
rs1174363908 2320 dbSNP
rs77456023 2325 dbSNP
rs988071024 2327 dbSNP
rs1377309637 2333 dbSNP
rs1446884846 2342 dbSNP
rs1047314416 2343 dbSNP
rs3832487 2346 dbSNP
rs1451726776 2347 dbSNP
rs1008509360 2353 dbSNP
rs1188550822 2363 dbSNP
rs913829817 2370 dbSNP
rs1358235392 2371 dbSNP
rs1443493987 2384 dbSNP
rs1256296158 2389 dbSNP
rs946723145 2392 dbSNP
rs1201651191 2396 dbSNP
rs185482682 2397 dbSNP
rs531797259 2400 dbSNP
rs1279197986 2405 dbSNP
rs1257358022 2406 dbSNP
rs1228595653 2408 dbSNP
rs938099104 2420 dbSNP
rs1344053535 2421 dbSNP
rs767983634 2426 dbSNP
rs1364257746 2430 dbSNP
rs1316063581 2436 dbSNP
rs753159039 2437 dbSNP
rs1196816323 2439 dbSNP
rs1240160184 2451 dbSNP
rs1401506197 2455 dbSNP
rs3735154 2458 dbSNP
rs1056521970 2459 dbSNP
rs1388778993 2461 dbSNP
rs1032349660 2462 dbSNP
rs1473439682 2464 dbSNP
rs1239742656 2465 dbSNP
rs541130171 2469 dbSNP
rs1440196495 2478 dbSNP
rs568711980 2481 dbSNP
rs1009838695 2490 dbSNP
rs778933324 2492 dbSNP
rs534378049 2496 dbSNP
rs1213802069 2497 dbSNP
rs1423516114 2502 dbSNP
rs561066117 2513 dbSNP
rs571098056 2515 dbSNP
rs994487854 2516 dbSNP
rs1027344891 2517 dbSNP
rs772232664 2523 dbSNP
rs539080130 2527 dbSNP
rs958458630 2537 dbSNP
rs991086972 2539 dbSNP
rs747158351 2540 dbSNP
rs372244040 2542 dbSNP
rs1161988198 2543 dbSNP
rs777937410 2546 dbSNP
rs988406568 2547 dbSNP
rs930997859 2550 dbSNP
rs1331811306 2560 dbSNP
rs1182246699 2570 dbSNP
rs1473261151 2578 dbSNP
rs1249208696 2579 dbSNP
rs1046965462 2580 dbSNP
rs1341977071 2584 dbSNP
rs768572409 2587 dbSNP
rs1291746917 2590 dbSNP
rs556087356 2595 dbSNP
rs576061534 2596 dbSNP
rs552619064 2597 dbSNP
rs1289119601 2600 dbSNP
rs1448480564 2601 dbSNP
rs908491950 2602 dbSNP
rs1338309145 2603 dbSNP
rs776566745 2609 dbSNP
rs943880606 2612 dbSNP
rs1040900632 2618 dbSNP
rs535221876 2619 dbSNP
rs1200018264 2624 dbSNP
rs62466581 2625 dbSNP
rs1321978823 2626 dbSNP
rs772689159 2635 dbSNP
rs1444399731 2636 dbSNP
rs1212010611 2644 dbSNP
rs571107809 2649 dbSNP
rs1262965405 2653 dbSNP
rs926632560 2657 dbSNP
rs540803498 2658 dbSNP
rs1056473430 2668 dbSNP
rs1161956834 2673 dbSNP
rs1473291405 2678 dbSNP
rs1409056630 2684 dbSNP
rs564242951 2687 dbSNP
rs1176326901 2688 dbSNP
rs918026323 2691 dbSNP
rs1196498006 2700 dbSNP
rs765983629 2701 dbSNP
rs940190161 2704 dbSNP
rs1037619290 2709 dbSNP
rs1196452419 2710 dbSNP
rs898726173 2714 dbSNP
rs1477413452 2717 dbSNP
rs577834603 2720 dbSNP
rs1210439843 2727 dbSNP
rs1327176721 2738 dbSNP
rs1283629865 2743 dbSNP
rs1220097027 2752 dbSNP
rs931562816 2755 dbSNP
rs1010010610 2760 dbSNP
rs1021205367 2763 dbSNP
rs1440674526 2767 dbSNP
rs759386271 2780 dbSNP
rs1170369026 2782 dbSNP
rs1366297149 2782 dbSNP
rs1403888248 2783 dbSNP
rs1323157435 2788 dbSNP
rs1435001941 2789 dbSNP
rs971389518 2797 dbSNP
rs1157696472 2798 dbSNP
rs1003634382 2799 dbSNP
rs1426854336 2800 dbSNP
rs200073377 2806 dbSNP
rs1170403396 2807 dbSNP
rs143227833 2813 dbSNP
rs1033823568 2819 dbSNP
rs1190494925 2821 dbSNP
rs1379053199 2823 dbSNP
rs751820933 2823 dbSNP
rs888777661 2824 dbSNP
rs562852716 2828 dbSNP
rs541344972 2832 dbSNP
rs1018689916 2833 dbSNP
rs901600834 2836 dbSNP
rs559356349 2839 dbSNP
rs531729619 2841 dbSNP
rs1021209976 2843 dbSNP
rs1448160504 2844 dbSNP
rs1360323112 2847 dbSNP
rs967955959 2850 dbSNP
rs952406855 2856 dbSNP
rs1433697185 2858 dbSNP
rs979309631 2861 dbSNP
rs548735275 2866 dbSNP
rs1401702458 2870 dbSNP
rs1296212605 2872 dbSNP
rs1418756350 2881 dbSNP
rs751105315 2885 dbSNP
rs1484287263 2889 dbSNP
rs908413682 2901 dbSNP
rs959348904 2902 dbSNP
rs77835947 2917 dbSNP
rs943942890 2921 dbSNP
rs1273201067 2923 dbSNP
rs992149230 2926 dbSNP
rs1226678651 2927 dbSNP
rs562142427 2928 dbSNP
rs917980449 2932 dbSNP
rs759175215 2934 dbSNP
rs1380780440 2936 dbSNP
rs1310535912 2940 dbSNP
rs921116648 2945 dbSNP
rs1370760845 2947 dbSNP
rs1419648432 2950 dbSNP
rs74365667 2953 dbSNP
rs1053862857 2955 dbSNP
rs1159737272 2958 dbSNP
rs1360608534 2961 dbSNP
rs1401877984 2965 dbSNP
rs1425482823 2966 dbSNP
rs756854137 2980 dbSNP
rs945358569 2988 dbSNP
rs1254282960 2991 dbSNP
rs1203202763 2992 dbSNP
rs931505012 2995 dbSNP
rs146365739 2997 dbSNP
rs1263046112 2999 dbSNP
rs11764143 3000 dbSNP
rs942984455 3013 dbSNP
rs1040079308 3019 dbSNP
rs901553080 3021 dbSNP
rs533630127 3023 dbSNP
rs995003399 3024 dbSNP
rs1026734852 3028 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agacauuuAUAGGGAAACGGACu 5'
                  || :|| ||||||| 
Target 5' --------UAAUCC-UUGCCUGc 3'
1 - 14
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000341567.4 | 3UTR | UAAUCCUUGCCUGCUGAACCCAGCCUGGGCCUGGAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
70 hsa-miR-4742-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT065632 CLIC4 chloride intracellular channel 4 2 4
MIRT068170 TXLNA taxilin alpha 2 2
MIRT119024 TSN translin 2 2
MIRT165212 GRAMD3 GRAM domain containing 2B 2 2
MIRT175254 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT213228 REST RE1 silencing transcription factor 2 6
MIRT296337 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT316776 FOXC1 forkhead box C1 2 2
MIRT453943 XRCC6 X-ray repair cross complementing 6 2 6
MIRT454599 RPL13A ribosomal protein L13a 2 2
MIRT458485 RMI1 RecQ mediated genome instability 1 2 6
MIRT458650 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459240 ADRBK1 G protein-coupled receptor kinase 2 2 2
MIRT461008 SYT7 synaptotagmin 7 2 2
MIRT462026 RIF1 replication timing regulatory factor 1 2 2
MIRT462103 TMEM214 transmembrane protein 214 2 2
MIRT463255 ZIC5 Zic family member 5 2 4
MIRT465190 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT470507 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT472356 TSPAN1 tetraspanin 1 2 2
MIRT473260 MIDN midnolin 2 2
MIRT477527 EIF4G2 eukaryotic translation initiation factor 4 gamma 2 2 4
MIRT485182 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 4
MIRT486461 MDM2 MDM2 proto-oncogene 2 2
MIRT492760 PER1 period circadian clock 1 2 8
MIRT496703 TRIM39 tripartite motif containing 39 2 2
MIRT497227 MORC2 MORC family CW-type zinc finger 2 2 2
MIRT499582 INTU inturned planar cell polarity protein 2 4
MIRT504081 C9orf40 chromosome 9 open reading frame 40 2 6
MIRT505484 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT513255 FBXO17 F-box protein 17 2 2
MIRT525061 FRK fyn related Src family tyrosine kinase 2 2
MIRT528798 RAB32 RAB32, member RAS oncogene family 2 2
MIRT534357 SFT2D2 SFT2 domain containing 2 2 2
MIRT538731 CAPN1 calpain 1 2 2
MIRT550792 WARS2 tryptophanyl tRNA synthetase 2, mitochondrial 2 2
MIRT553994 SRPR SRP receptor alpha subunit 2 4
MIRT568102 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT570107 SLC18B1 solute carrier family 18 member B1 2 2
MIRT570823 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT572004 HMGB1 high mobility group box 1 2 2
MIRT572352 PCYT2 phosphate cytidylyltransferase 2, ethanolamine 2 2
MIRT609716 TMEM132C transmembrane protein 132C 2 2
MIRT613982 LRRC40 leucine rich repeat containing 40 2 2
MIRT620740 CCL16 C-C motif chemokine ligand 16 2 2
MIRT625074 C15orf41 chromosome 15 open reading frame 41 2 4
MIRT627941 NNT nicotinamide nucleotide transhydrogenase 2 2
MIRT629941 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT633396 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT635846 ZNF264 zinc finger protein 264 2 2
MIRT638086 ZNF652 zinc finger protein 652 2 2
MIRT643996 TCHP trichoplein keratin filament binding 2 2
MIRT660020 C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 2 2
MIRT660161 BRCC3 BRCA1/BRCA2-containing complex subunit 3 2 2
MIRT668887 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT676729 METTL14 methyltransferase like 14 2 2
MIRT677210 MURC caveolae associated protein 4 2 2
MIRT685949 PTGIS prostaglandin I2 synthase 2 2
MIRT687816 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT689900 SOD2 superoxide dismutase 2 2 2
MIRT698214 TMEM248 transmembrane protein 248 2 2
MIRT698279 TMEM2 transmembrane protein 2 2 2
MIRT698758 STK4 serine/threonine kinase 4 2 2
MIRT698789 STK38 serine/threonine kinase 38 2 2
MIRT703152 GPR137C G protein-coupled receptor 137C 2 2
MIRT704408 CTPS1 CTP synthase 1 2 2
MIRT705067 C4orf32 family with sequence similarity 241 member A 2 2
MIRT710201 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT714495 HSPA4 heat shock protein family A (Hsp70) member 4 2 2
MIRT720082 TNRC6B trinucleotide repeat containing 6B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4742-5p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4742-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4742-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4742-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4742-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4742-5p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4742-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-4742-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-4742-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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