pre-miRNA Information
pre-miRNA hsa-mir-125b-2   
Genomic Coordinates chr21: 16590237 - 16590325
Synonyms MIRN125B2, MIR125B2
Description Homo sapiens miR-125b-2 stem-loop
Comment This miRNA sequence is predicted based on homology to a verified miRNA from mouse .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-125b-2-3p
Sequence 54| UCACAAGUCAGGCUCUUGGGAC |75
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 21 + 16590292 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs575583557 6 dbSNP
rs1331783293 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol STX12   
Synonyms STX13, STX14
Description syntaxin 12
Transcript NM_177424   
Expression
Putative miRNA Targets on STX12
3'UTR of STX12
(miRNA target sites are highlighted)
>STX12|NM_177424|3'UTR
   1 TTGCCTCCGATCGTTCTCCCGCTGAGCTGTTTTCAAGGGCAAGTGCTTGTTGAAGTCTTGCCAGAACAAACTGATCACAA
  81 GAAGACAGCATATATCAGAACGTCCTGTAATCATTTAGTTAGAAACTAACTACTAACTAGTCTTTGGAATTCGTGACCTA
 161 TGGAGACAGTAATTATCAATTTATTGATTCTATTGATTTCTCAAATTAGGAATTAACTTATGTGGATTTTGCTTCCTCTT
 241 GTATTCTGATTGCCCTTCATCCCAAGTGTTTACTGAAAATTCCATTCTAGATATTCTTGTTTTGACAAATGACACTACAG
 321 TCTCGTAATATTGTCTTTTATGTATATACAAAATTTACCTTTTTACTAGCATCTGAGATAGAGTTACTTTCTGGTACCCA
 401 GTATATTGGAGTCTGTCAGAAACTCTATAATAGGCCACCAGTTTTTATTATTTAACATTTTTATTTGAATTTCTAAGAAG
 481 CCTATTCTCTATCTATTTTGAAAGATTTTGGCACTATATTTAATTGGAAGGTAAAATATTGTACATGTGATCCAGAGTAA
 561 ATGAGAAGTCTCTATCTGAGCTGGTCAGTTACTGGAGTACATGTTACTAATCTGGGTTTAAAGTTTACTTCATTATCTGC
 641 TAGTGTCATCCACAGCAGTTCATCCTCATCCACACTAAGCCATCCTGTTAGCTTTTAAAGGAAGTTAATTTAATTAACAT
 721 TAATATACTCTATGGGCTCCCTCTCCCACCTGTCTGCATAGAAAGGCAGAATTAGACATAGCATGCTTTGGAAAAGCAAA
 801 TAGGAATTGTTGGGAATGATTTAATCTTGTTGTTGTTGTTGTTGTTGTTCACTTGTGGTTCTACATTCCTGGTGAATGAT
 881 GAATGTTGCTGTCAAAGGGCTGCCCCCTACCTTATAAGGGTTGCTGGGCATTTGAAGGCAGGAAGATTTTTAAAGATAGA
 961 TTGAGGTTGGTTTAAAATTATTCCTGTAAACCAACAATAAAGCAAAGAAGAGGTTCATTTTTGTAAATAACACTGGTTTC
1041 AAATAGTGATGTTAGACTTAACCTAATTTATAAACAAGAGATTAATATCTCCATGCATAGTTTTAGACAAAAAAAGATGT
1121 TTCAATAAAATTACTGTCTTGTAATATAAATGTTGTCCACTTCCCTTTTCCACAGGCCTAGAACAGTTAAAGGGAACATA
1201 ATTTGTTTAGGCTCCCACATAAATGTGAATCTGGCCAACAACTTTGGTTCATCCTTTAGTGAATTAGAGGATTTGGCTAC
1281 CCTGAGTATATTTATATTCATTTCTTCTGTTCTCCTTCTGTTATTATACTTAATCTTCTAAACTAAACTAATGTGAACAG
1361 TAGGGAAGCAAGGGCCCAAATGCATAAGTTTCTTTGCACTGTTGCACTTACTTAATACAAATAAATGTTTTTTAAAGCTT
1441 TTGTAGTATGTTTTTATGAGTTAACATCCTAATGTGGTAGGTATTAGGTAATGTGCTGTCATGAGAAAAATTGAGACTTC
1521 CAAGAAAACTGGACACCAGGTGAGGGTTGGTTTGGAGACGGAATAGGTGTAGCTGCCTTTCCTTGAAAAACAGTGTGTAG
1601 AGATGGCTGAGTGCAATGGCTCACACTTGTAATCCCAACACTTTGGAAGGCTGAGGCGGGAGGATCAGTATATCGGTACG
1681 TCTGAGCCCAAGAGTTCAAGATCAGCCTGGGCAGTATAGCAAGACCCCATCTCCATTTTTTTTTTAATGATTTTTTAATT
1761 AAAAAAAAGAACAACAGGATAGAGCTGTTGGGGTGGCACAGTGGCCCAAAGAGCAGCTTCAGAGATAATTCCTTGGTTCT
1841 ATGATCCCTGTTTAACTCCAAATTACAGTCGGACTTGGATACATCATTTGTAACATTGTAGGAAAGAAAAAAGTCTTGGT
1921 TGTGAAAAACGATTTGCATTTGGGTAAAATAAAGTGACCATGCTTTTGTTCTGTAATACTGTGTGACCTGTGGTTGTTGT
2001 AATGGTGATCATGGAGAGCAAATATGAACTTGGCCTGGATTTTAAATGGCCTAGAATTTGTGGTAGTTGCCAAAGAGGTT
2081 CTCCTAGGTGGTCTTAATAAACCTATTCACAGAATTCTCCTTAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' caggguucucgGACUGAACACu 5'
                     :| ||||||| 
Target 5' tgttgttgttgTTCACTTGTGg 3'
837 - 858 143.00 -9.60
2
miRNA  3' cagggUUCUCGGA-C-UGAACACu 5'
               || :|||| | |:||||| 
Target 5' ttttaAATGGCCTAGAATTTGTGg 3'
2040 - 2063 141.00 -12.70
3
miRNA  3' caggGUUCUCG-GACUGAACAcu 5'
              ||| :|| |  ||||||  
Target 5' agtgCAATGGCTCACACTTGTaa 3'
1610 - 1632 134.00 -8.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26997352 9 COSMIC
COSN30505404 9 COSMIC
COSN26997351 14 COSMIC
COSN20401016 25 COSMIC
COSN30459984 29 COSMIC
COSN31595594 56 COSMIC
COSN30508156 58 COSMIC
COSN31510838 76 COSMIC
COSN31589685 102 COSMIC
COSN31515991 113 COSMIC
COSN31524098 137 COSMIC
COSN7216073 154 COSMIC
COSN30510540 203 COSMIC
COSN31523208 419 COSMIC
COSN30174426 984 COSMIC
COSN24606914 1074 COSMIC
COSN29468405 1235 COSMIC
COSN31485672 1432 COSMIC
COSN31484113 1461 COSMIC
COSN28471021 1746 COSMIC
COSN8455680 1837 COSMIC
COSN20090193 1842 COSMIC
COSN16379343 1847 COSMIC
COSN22105680 1886 COSMIC
COSN21113770 2089 COSMIC
COSN20905730 2109 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs375910348 9 dbSNP
rs370254927 10 dbSNP
rs34947843 12 dbSNP
rs755150633 13 dbSNP
rs745502060 14 dbSNP
rs748152648 16 dbSNP
rs1470112536 21 dbSNP
rs545632186 22 dbSNP
rs551520742 27 dbSNP
rs1419111397 30 dbSNP
rs6660458 38 dbSNP
rs1369493180 41 dbSNP
rs745735917 43 dbSNP
rs1460847933 45 dbSNP
rs746434273 50 dbSNP
rs772149596 50 dbSNP
rs775413692 52 dbSNP
rs746871479 53 dbSNP
rs571512235 57 dbSNP
rs1477006889 65 dbSNP
rs771355925 69 dbSNP
rs1189533494 87 dbSNP
rs184995606 91 dbSNP
rs1435534826 92 dbSNP
rs1413275278 98 dbSNP
rs894193782 99 dbSNP
rs749588204 102 dbSNP
rs1421868600 103 dbSNP
rs959461664 109 dbSNP
rs1330973943 110 dbSNP
rs1435024709 127 dbSNP
rs1013092046 141 dbSNP
rs551239443 153 dbSNP
rs1023949012 154 dbSNP
rs971492588 155 dbSNP
rs550840779 156 dbSNP
rs190682818 160 dbSNP
rs1471181374 177 dbSNP
rs1283389074 180 dbSNP
rs1355413125 187 dbSNP
rs1205441526 190 dbSNP
rs747323835 198 dbSNP
rs1449786363 210 dbSNP
rs1200958954 220 dbSNP
rs762419865 222 dbSNP
rs867888774 226 dbSNP
rs1335456770 238 dbSNP
rs962937036 255 dbSNP
rs192463885 267 dbSNP
rs924228443 269 dbSNP
rs142321195 285 dbSNP
rs1395884217 288 dbSNP
rs1445313026 288 dbSNP
rs987176576 289 dbSNP
rs1365508157 297 dbSNP
rs1378635797 297 dbSNP
rs1239401611 299 dbSNP
rs1217427564 305 dbSNP
rs773585641 306 dbSNP
rs1262389464 307 dbSNP
rs954132353 313 dbSNP
rs911564361 314 dbSNP
rs987314893 315 dbSNP
rs565653559 316 dbSNP
rs943102734 318 dbSNP
rs760968301 319 dbSNP
rs920426298 325 dbSNP
rs930498924 326 dbSNP
rs1165366922 331 dbSNP
rs374635752 332 dbSNP
rs1047667793 333 dbSNP
rs1328681422 336 dbSNP
rs183799549 343 dbSNP
rs1391587251 345 dbSNP
rs924483432 358 dbSNP
rs1338365977 359 dbSNP
rs754159918 373 dbSNP
rs1293697990 377 dbSNP
rs550960481 380 dbSNP
rs753201965 381 dbSNP
rs1056441266 382 dbSNP
rs1481688340 394 dbSNP
rs935911026 398 dbSNP
rs1054258870 406 dbSNP
rs1190497057 411 dbSNP
rs894316275 412 dbSNP
rs1234133108 414 dbSNP
rs1012247615 423 dbSNP
rs1192355895 433 dbSNP
rs1022374796 437 dbSNP
rs1476729893 448 dbSNP
rs1399546147 481 dbSNP
rs1012648467 482 dbSNP
rs1397479747 485 dbSNP
rs1198025824 488 dbSNP
rs1430669563 496 dbSNP
rs1339644849 502 dbSNP
rs759667876 505 dbSNP
rs1398047242 507 dbSNP
rs371787834 517 dbSNP
rs904021587 521 dbSNP
rs999675527 529 dbSNP
rs557510773 540 dbSNP
rs1343131134 541 dbSNP
rs1213339945 542 dbSNP
rs571157656 553 dbSNP
rs1488137672 560 dbSNP
rs1191988539 562 dbSNP
rs1264387110 569 dbSNP
rs1429647031 571 dbSNP
rs955624822 577 dbSNP
rs1375497528 587 dbSNP
rs1348237430 588 dbSNP
rs1173934081 594 dbSNP
rs1359523578 595 dbSNP
rs879107451 598 dbSNP
rs1283978871 613 dbSNP
rs1004248180 617 dbSNP
rs1015223567 618 dbSNP
rs1362555242 622 dbSNP
rs987469301 629 dbSNP
rs1300639927 633 dbSNP
rs765410022 643 dbSNP
rs536742515 644 dbSNP
rs1346139244 646 dbSNP
rs1225266909 647 dbSNP
rs1214826522 648 dbSNP
rs752689973 654 dbSNP
rs1486478408 656 dbSNP
rs974483575 659 dbSNP
rs758441645 663 dbSNP
rs1268207829 673 dbSNP
rs556790396 674 dbSNP
rs1338445033 679 dbSNP
rs1379236920 681 dbSNP
rs930446216 698 dbSNP
rs1488072595 711 dbSNP
rs1274722908 729 dbSNP
rs995733736 732 dbSNP
rs983260597 733 dbSNP
rs1170622590 739 dbSNP
rs1291661822 744 dbSNP
rs573532475 751 dbSNP
rs1449488752 765 dbSNP
rs1396633805 769 dbSNP
rs1221164885 770 dbSNP
rs1443106897 778 dbSNP
rs1304266288 780 dbSNP
rs1028429903 789 dbSNP
rs1268969278 819 dbSNP
rs777804780 820 dbSNP
rs986894691 825 dbSNP
rs367836252 827 dbSNP
rs750162661 827 dbSNP
rs759799488 827 dbSNP
rs939249421 827 dbSNP
rs948088355 827 dbSNP
rs912676637 830 dbSNP
rs1470226587 835 dbSNP
rs1213713249 844 dbSNP
rs1237103150 851 dbSNP
rs966821622 858 dbSNP
rs368735736 861 dbSNP
rs188059351 864 dbSNP
rs925284763 869 dbSNP
rs1294749977 872 dbSNP
rs935878169 880 dbSNP
rs1475922555 885 dbSNP
rs990088400 886 dbSNP
rs553594655 907 dbSNP
rs1419866611 914 dbSNP
rs1326661495 915 dbSNP
rs573558734 915 dbSNP
rs1399700575 924 dbSNP
rs1424250690 931 dbSNP
rs181301773 938 dbSNP
rs565474783 946 dbSNP
rs1300068808 958 dbSNP
rs531169404 962 dbSNP
rs1367458985 967 dbSNP
rs1406713412 971 dbSNP
rs1228041400 980 dbSNP
rs544652246 982 dbSNP
rs1045572731 993 dbSNP
rs891294208 995 dbSNP
rs1227942604 998 dbSNP
rs1271696295 1005 dbSNP
rs1008479154 1012 dbSNP
rs1018978641 1014 dbSNP
rs1206044094 1037 dbSNP
rs1233025325 1043 dbSNP
rs561249064 1048 dbSNP
rs1179885536 1050 dbSNP
rs1259437194 1052 dbSNP
rs1475478267 1054 dbSNP
rs1244697458 1059 dbSNP
rs1169944444 1076 dbSNP
rs1421421736 1077 dbSNP
rs1291885669 1078 dbSNP
rs772795231 1079 dbSNP
rs1027341955 1081 dbSNP
rs41305767 1085 dbSNP
rs1311407198 1087 dbSNP
rs745582245 1089 dbSNP
rs1415806734 1090 dbSNP
rs907661519 1094 dbSNP
rs1195853564 1105 dbSNP
rs1236083787 1106 dbSNP
rs1215752267 1107 dbSNP
rs960862402 1109 dbSNP
rs769297204 1118 dbSNP
rs1444244009 1120 dbSNP
rs995702801 1123 dbSNP
rs541336122 1124 dbSNP
rs1164390944 1125 dbSNP
rs779644074 1133 dbSNP
rs1387188720 1139 dbSNP
rs1485850843 1146 dbSNP
rs1192714232 1165 dbSNP
rs546663102 1174 dbSNP
rs992081097 1183 dbSNP
rs751267476 1195 dbSNP
rs948036816 1206 dbSNP
rs1158041698 1207 dbSNP
rs1384232669 1209 dbSNP
rs1414098392 1211 dbSNP
rs1171956294 1213 dbSNP
rs1382704481 1215 dbSNP
rs1377534386 1221 dbSNP
rs748694091 1226 dbSNP
rs1297984434 1228 dbSNP
rs561352716 1231 dbSNP
rs772578293 1237 dbSNP
rs1270242347 1245 dbSNP
rs1320047288 1252 dbSNP
rs1043682591 1275 dbSNP
rs1231474332 1285 dbSNP
rs889956806 1287 dbSNP
rs1008772631 1302 dbSNP
rs528369493 1311 dbSNP
rs1305127699 1315 dbSNP
rs773646731 1321 dbSNP
rs925297498 1324 dbSNP
rs967167850 1325 dbSNP
rs978187454 1328 dbSNP
rs867369537 1353 dbSNP
rs1052990923 1357 dbSNP
rs1216469582 1361 dbSNP
rs1246074132 1371 dbSNP
rs891288904 1378 dbSNP
rs1008843018 1384 dbSNP
rs1397052858 1385 dbSNP
rs1454912308 1386 dbSNP
rs551305575 1393 dbSNP
rs1383306898 1405 dbSNP
rs990057343 1409 dbSNP
rs915776109 1410 dbSNP
rs1402933116 1428 dbSNP
rs900062697 1433 dbSNP
rs374417883 1434 dbSNP
rs571070285 1443 dbSNP
rs770424867 1447 dbSNP
rs948674385 1450 dbSNP
rs1438002872 1451 dbSNP
rs981655292 1460 dbSNP
rs1327348809 1475 dbSNP
rs536858964 1479 dbSNP
rs878927833 1482 dbSNP
rs1301186048 1484 dbSNP
rs939755268 1486 dbSNP
rs761170763 1489 dbSNP
rs1352122353 1497 dbSNP
rs1036771558 1499 dbSNP
rs951695945 1508 dbSNP
rs1288973898 1518 dbSNP
rs557955291 1527 dbSNP
rs1467091181 1528 dbSNP
rs1004632666 1530 dbSNP
rs1015121358 1538 dbSNP
rs1469049731 1541 dbSNP
rs960556939 1546 dbSNP
rs771344992 1551 dbSNP
rs898159301 1554 dbSNP
rs1214949809 1560 dbSNP
rs1471340865 1561 dbSNP
rs931018435 1562 dbSNP
rs916431334 1568 dbSNP
rs145974294 1570 dbSNP
rs184935154 1573 dbSNP
rs890000793 1574 dbSNP
rs1166463649 1582 dbSNP
rs1394634354 1591 dbSNP
rs148627184 1596 dbSNP
rs768815449 1603 dbSNP
rs1326398078 1607 dbSNP
rs1337167996 1613 dbSNP
rs1020175498 1617 dbSNP
rs902706104 1621 dbSNP
rs552983062 1623 dbSNP
rs141258681 1626 dbSNP
rs1235099672 1627 dbSNP
rs1438045844 1631 dbSNP
rs776841472 1642 dbSNP
rs1335498270 1645 dbSNP
rs75197843 1658 dbSNP
rs559300438 1659 dbSNP
rs1439795550 1671 dbSNP
rs1182966230 1673 dbSNP
rs116091539 1676 dbSNP
rs562238861 1680 dbSNP
rs775662137 1681 dbSNP
rs1419245450 1695 dbSNP
rs981407915 1697 dbSNP
rs1464587929 1703 dbSNP
rs756821431 1704 dbSNP
rs189457164 1710 dbSNP
rs1410245932 1711 dbSNP
rs1403672968 1712 dbSNP
rs1353379277 1726 dbSNP
rs928447241 1727 dbSNP
rs1337122515 1730 dbSNP
rs574817010 1732 dbSNP
rs1048716883 1736 dbSNP
rs75000552 1736 dbSNP
rs995719935 1736 dbSNP
rs79941437 1737 dbSNP
rs1249750379 1745 dbSNP
rs540771711 1746 dbSNP
rs1196644786 1747 dbSNP
rs887433819 1748 dbSNP
rs1389317746 1750 dbSNP
rs757994201 1751 dbSNP
rs8985 1762 dbSNP
rs1428501560 1766 dbSNP
rs11811793 1767 dbSNP
rs751604469 1768 dbSNP
rs1281889073 1771 dbSNP
rs1475522977 1786 dbSNP
rs1323417842 1807 dbSNP
rs181932318 1810 dbSNP
rs1204770769 1825 dbSNP
rs931070951 1842 dbSNP
rs866453531 1848 dbSNP
rs150770025 1849 dbSNP
rs1380524974 1866 dbSNP
rs979312832 1867 dbSNP
rs1420915766 1871 dbSNP
rs1328330536 1872 dbSNP
rs1032252178 1884 dbSNP
rs910904932 1897 dbSNP
rs1346006266 1907 dbSNP
rs956714959 1909 dbSNP
rs1281571014 1911 dbSNP
rs767366942 1917 dbSNP
rs1197324731 1919 dbSNP
rs1203943594 1920 dbSNP
rs944269023 1931 dbSNP
rs116080161 1932 dbSNP
rs1392815876 1938 dbSNP
rs902674833 1939 dbSNP
rs750142718 1949 dbSNP
rs999732398 1952 dbSNP
rs1176976691 1953 dbSNP
rs1451517319 1955 dbSNP
rs912578775 1957 dbSNP
rs1385583420 1965 dbSNP
rs1382789576 1972 dbSNP
rs944087414 1974 dbSNP
rs550483977 1976 dbSNP
rs1407942734 1982 dbSNP
rs1369040187 1983 dbSNP
rs532389361 1993 dbSNP
rs1236820764 1994 dbSNP
rs781565856 2003 dbSNP
rs975497991 2003 dbSNP
rs1316649358 2010 dbSNP
rs1053967549 2012 dbSNP
rs1237370167 2017 dbSNP
rs1262946207 2030 dbSNP
rs1486488045 2034 dbSNP
rs750185087 2040 dbSNP
rs755810583 2048 dbSNP
rs931503162 2052 dbSNP
rs567478802 2066 dbSNP
rs1392670610 2071 dbSNP
rs1249413039 2074 dbSNP
rs1048663823 2080 dbSNP
rs369575799 2088 dbSNP
rs970784460 2089 dbSNP
rs1003197314 2090 dbSNP
rs1280787821 2102 dbSNP
rs1345506953 2103 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' caggguucucgGACUGAACACu 5'
                     :| ||||||| 
Target 5' ------uguugUUCACUUGUGg 3'
1 - 16
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000373943.4 | 3UTR | UGUUGUUCACUUGUGGUUCUACAUUCCUGGUGAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE19536 Breast cancer 0.259 4.6e-3 0.231 1.0e-2 100 Click to see details
GSE19783 ER- ER- breast cancer 0.232 2.0e-2 0.236 1.8e-2 79 Click to see details
GSE28260 Renal cortex and medulla 0.507 3.9e-2 0.516 3.6e-2 13 Click to see details
GSE21032 Prostate cancer 0.175 5.7e-2 0.192 4.1e-2 83 Click to see details
GSE28544 Breast cancer 0.308 7.2e-2 0.347 4.8e-2 24 Click to see details
GSE19783 ER+ ER+ breast cancer 0.331 7.7e-2 0.296 1.0e-1 20 Click to see details
GSE17498 Multiple myeloma 0.218 8.8e-2 0.292 3.4e-2 40 Click to see details
GSE32688 Pancreatic cancer -0.217 1.2e-1 -0.132 2.4e-1 32 Click to see details
GSE42095 Differentiated embryonic stem cells 0.245 1.3e-1 0.448 1.6e-2 23 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.884 1.5e-1 -0.500 3.3e-1 3 Click to see details
GSE19350 CNS germ cell tumors 0.304 1.7e-1 0.334 1.4e-1 12 Click to see details
GSE26953 Aortic valvular endothelial cells -0.136 2.6e-1 -0.131 2.7e-1 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.116 2.9e-1 0.110 3.0e-1 25 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.106 3.1e-1 0.223 1.4e-1 25 Click to see details
GSE38226 Liver fibrosis -0.089 3.5e-1 -0.346 6.2e-2 21 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.089 3.5e-1 0.362 5.8e-2 20 Click to see details
GSE21687 Ependynoma primary tumors 0.046 3.6e-1 0.019 4.4e-1 64 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD -0.408 0.01 -0.355 0.02 32 Click to see details
THCA 0.273 0.02 0.215 0.05 59 Click to see details
LIHC 0.292 0.02 0.227 0.06 49 Click to see details
HNSC 0.286 0.03 0.214 0.09 42 Click to see details
LUAD 0.475 0.06 0.622 0.02 12 Click to see details
CESC -0.957 0.09 -1.000 0.5 3 Click to see details
BRCA 0.138 0.11 0.100 0.18 84 Click to see details
UCEC -0.299 0.11 -0.354 0.07 19 Click to see details
PAAD 0.781 0.11 0.400 0.3 4 Click to see details
KIRC -0.15 0.11 -0.121 0.16 68 Click to see details
ESCA -0.376 0.13 -0.400 0.11 11 Click to see details
PCPG 0.858 0.17 0.500 0.33 3 Click to see details
COAD 0.384 0.17 0.452 0.13 8 Click to see details
KIRP 0.158 0.19 0.051 0.39 32 Click to see details
PRAD 0.107 0.23 0.088 0.27 50 Click to see details
CHOL -0.216 0.29 -0.283 0.23 9 Click to see details
BLCA 0.084 0.37 0.284 0.13 18 Click to see details
KICH 0.058 0.39 0.123 0.28 25 Click to see details
LUSC 0.008 0.48 -0.003 0.49 38 Click to see details
LUSC 0.008 0.48 -0.003 0.49 38 Click to see details
LUSC 0.008 0.48 -0.003 0.49 38 Click to see details
91 hsa-miR-125b-2-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT038624 HN1L Jupiter microtubule associated homolog 2 1 1
MIRT038625 KDELC2 KDEL motif containing 2 1 1
MIRT038626 ABHD15 abhydrolase domain containing 15 1 1
MIRT038627 PPP1R12C protein phosphatase 1 regulatory subunit 12C 1 1
MIRT038628 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 1 1
MIRT038629 ASH2L ASH2 like histone lysine methyltransferase complex subunit 1 1
MIRT038630 USP22 ubiquitin specific peptidase 22 1 1
MIRT038631 CSTB cystatin B 1 1
MIRT038632 SYT2 synaptotagmin 2 1 1
MIRT038633 NDUFS7 NADH:ubiquinone oxidoreductase core subunit S7 1 1
MIRT038634 MTA2 metastasis associated 1 family member 2 1 1
MIRT053086 IGF1R insulin like growth factor 1 receptor 3 1
MIRT055788 PLEKHA1 pleckstrin homology domain containing A1 2 12
MIRT061248 AMOTL1 angiomotin like 1 2 10
MIRT061649 BTG2 BTG anti-proliferation factor 2 2 6
MIRT079046 TNRC6C trinucleotide repeat containing 6C 2 4
MIRT084583 BCL2L11 BCL2 like 11 2 8
MIRT093523 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 2
MIRT097383 LHFPL2 LHFPL tetraspan subfamily member 2 2 4
MIRT098030 SOBP sine oculis binding protein homolog 2 2
MIRT186262 TCEB3 elongin A 2 2
MIRT187284 DAZAP2 DAZ associated protein 2 2 10
MIRT361113 LRRC1 leucine rich repeat containing 1 2 2
MIRT443585 FAM84B family with sequence similarity 84 member B 2 2
MIRT452249 TRAM1 translocation associated membrane protein 1 2 2
MIRT476289 GMFB glia maturation factor beta 2 8
MIRT483871 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT484250 ANK1 ankyrin 1 2 2
MIRT499251 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT502270 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 4
MIRT504652 RPL9 ribosomal protein L9 2 6
MIRT505210 UBN2 ubinuclein 2 2 6
MIRT512690 POP1 POP1 homolog, ribonuclease P/MRP subunit 2 2
MIRT517341 ZNF529 zinc finger protein 529 2 4
MIRT518946 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT520866 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521236 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT528324 GIGYF2 GRB10 interacting GYF protein 2 2 2
MIRT533297 USP46 ubiquitin specific peptidase 46 2 2
MIRT541024 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT544034 ERRFI1 ERBB receptor feedback inhibitor 1 2 2
MIRT547037 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT556102 MOAP1 modulator of apoptosis 1 2 2
MIRT558320 DR1 down-regulator of transcription 1 2 2
MIRT558520 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT566230 PTMA prothymosin, alpha 2 4
MIRT568437 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT570584 OTUD7B OTU deubiquitinase 7B 2 2
MIRT571384 JKAMP JNK1/MAPK8-associated membrane protein 2 2
MIRT572798 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT573864 C9orf78 chromosome 9 open reading frame 78 2 2
MIRT609930 SLC38A1 solute carrier family 38 member 1 2 4
MIRT610437 CSMD2 CUB and Sushi multiple domains 2 2 2
MIRT614407 MURC caveolae associated protein 4 2 2
MIRT618625 GREB1 growth regulation by estrogen in breast cancer 1 2 2
MIRT620605 SAP30 Sin3A associated protein 30 2 2
MIRT635313 FAM179A TOG array regulator of axonemal microtubules 2 2 2
MIRT635918 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638507 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT640597 TM9SF4 transmembrane 9 superfamily member 4 2 2
MIRT644066 IQCE IQ motif containing E 2 2
MIRT648287 TRAPPC2L trafficking protein particle complex 2 like 2 2
MIRT653089 SSR3 signal sequence receptor subunit 3 2 2
MIRT654651 PTAFR platelet activating factor receptor 2 2
MIRT658084 FOXR2 forkhead box R2 2 2
MIRT665306 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT665974 SYTL4 synaptotagmin like 4 2 2
MIRT674905 RASSF9 Ras association domain family member 9 2 2
MIRT680085 THAP1 THAP domain containing 1 2 2
MIRT681487 DIP2A disco interacting protein 2 homolog A 2 2
MIRT691243 DFNB59 pejvakin 2 2
MIRT692361 AGTRAP angiotensin II receptor associated protein 2 2
MIRT693034 MB21D1 Mab-21 domain containing 1 2 2
MIRT694478 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT696069 ZNF264 zinc finger protein 264 2 2
MIRT696579 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696759 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 2
MIRT697306 ZNF652 zinc finger protein 652 2 2
MIRT698736 STX12 syntaxin 12 2 2
MIRT701055 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT701197 OTUD3 OTU deubiquitinase 3 2 2
MIRT701334 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT703617 FBXO45 F-box protein 45 2 2
MIRT708893 ZNF780A zinc finger protein 780A 2 2
MIRT711621 DGKH diacylglycerol kinase eta 2 2
MIRT713744 TMEM81 transmembrane protein 81 2 2
MIRT715060 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT719711 CD101 CD101 molecule 2 2
MIRT720293 DLGAP3 DLG associated protein 3 2 2
MIRT722605 CCDC152 coiled-coil domain containing 152 2 2
MIRT724565 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-125b-2 Ascorbate approved 54670067 Microarray Metastatic melanoma cell lines 25202679 2014 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-125b-2 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-125b-2 Methotrexate 126941 NSC740 approved resistant High Colorectal Adenocarcinoma cell line (HT-29)
hsa-mir-125b-2 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia tissue
hsa-mir-125b-2 Doxorubicin 31703 NSC123127 approved sensitive Low Hepatocellular Carcinoma cell line (Huh-7, HLE, HuH1)
hsa-mir-125b-2 Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375)
hsa-mir-125b-2 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-125b-2 Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-125b-2 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-125b-2 Vincristine 5978 approved resistant cell line (W1)
hsa-mir-125b-2 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-mir-125b-2 Tamoxifen 2733525 NSC180973 approved resistant tissue (ER-positive breast cancer)
hsa-mir-125b-2 Tamoxifen 2733525 NSC180973 approved sensitive cell line (MCF7)
hsa-mir-125b-2 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-125b-2-3p Platinum 23939 resistant High Ovarian Cancer tissue
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved sensitive Low Cervical Cancer tissue
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (BGC823)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-miR-125b-2-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-125b-2-3p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-125b-2-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer tissue
hsa-miR-125b-2-3p Fluorouracil 3385 NSC19893 approved resistant High Gastric Cancer tissue
hsa-miR-125b-2-3p Cyclophosphamide + Doxorubicin + Vincristine + Prednisone + Rituximab resistant High Diffuse Large B-Cell Lymphoma cell line (SU-DHL-2)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Lung Adenocarcinoma cell line (A549)
hsa-miR-125b-2-3p Oxaliplatin 6857599 NSC266046 approved sensitive Low Colorectal Cancer cell line (HCT8, HCT-116)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780)
hsa-miR-125b-2-3p Antiepileptic Drug sensitive High Pediatric Epilepsy tissue
hsa-miR-125b-2-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-125b-2-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-125b-2-3p 4-Hydroxytamoxifen+Tamoxifen resistant cell line (LY2)
hsa-miR-125b-2-3p Ethanol+Tamoxifen resistant cell line (LY2)
hsa-miR-125b-2-3p Methotrexate 126941 NSC740 approved resistant cell line (HT29)
hsa-miR-125b-2-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-125b-2-3p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-125b-2-3p Paclitaxel 36314 NSC125973 approved resistant cell line (PC3PR70)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-125b-2-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-125b-2-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-125b-2-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (BGC-823)

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