pre-miRNA Information
pre-miRNA hsa-mir-4742   
Genomic Coordinates chr1: 224398227 - 224398311
Description Homo sapiens miR-4742 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4742-5p
Sequence 1| UCAGGCAAAGGGAUAUUUACAGA |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1234293681 4 dbSNP
rs778464201 9 dbSNP
rs758952505 12 dbSNP
rs753463665 16 dbSNP
rs765920862 18 dbSNP
rs1205603801 20 dbSNP
rs756994761 21 dbSNP
Putative Targets

Gene Information
Gene Symbol STK38   
Synonyms NDR, NDR1
Description serine/threonine kinase 38
Transcript NM_007271   
Expression
Putative miRNA Targets on STK38
3'UTR of STK38
(miRNA target sites are highlighted)
>STK38|NM_007271|3'UTR
   1 TACTCTTGCCACGGAATCCTATGTGGAGCAGAGTTCTTTGTATAACATCATGCTTTTCCTCTCACACTCTTGAAGAGCTT
  81 CCAAGAAGTTGATGGAACCCACCAATATGTCATAGTAAAGTCTCCTGAAATGTGGTAGTAAGAGGATTTTCTTCCATAAT
 161 GCATCTGAAAAACTGTAAACAAAGACAACCATTTCTACTACGTCGGCCATAAACAGCTATCCTGCTTTGGAAGAGAAGCA
 241 TCATGAGCCAATTTGATAGGTGTTTTAAAAATAACTTGAGTTTTCCTAAGTTCATCAGAATGAAGGGGAAAAACAGCCAT
 321 CATCCAACATTATTGAGATTGTCGTGTATAGTCATCGAATATCAGCCAGTTCCTGTAATTTTGTGACACGCTCTCTGCCA
 401 AGCCCACCAAGTATTTCCTTTATAGCTAAAAGTTCCATAGTACTAAGGAAATAAAGCAATAAAGACAGTCTCAGCAGCCA
 481 GGATTCTGGCTGAAGGAAATGATCCGCCACCCTGAGGGTGGTGATGGTAGTTTCTACCCATACCTCAGCCTCAGGCGAGT
 561 GGCTTATAGCCTCCATTCATGGTGCACTTTATTTATGGTACTAAGATAAAGACTGTCAATCCATTGATTTATCTCCTCCT
 641 GTCCCCCATCTAAAATACCCATGCTGCTTTTCTGAGTGTTGATGGGGGTTACCAGCTTGATCCACTGTTGCTCTTAGAAG
 721 GCCCAGAAAGTCTTTGGGCATTGCCAAGAAATCCCGGATTATGTGGAAAACCCTCACTTTCTCTTCACGGCTGTACCAGA
 801 AAATCCCTAAGACAGATCTTGCCGTGGACTAGCAATACCTGCAAGTGCTGCCAATGGGAACTCAATTTATTCCTGGGAAC
 881 CTAACGAGGAGAGCCCAGGCCTAGGCAGGAGGCCTGGAACCCTCTTGGCTAAGGTGCTGTTCCTGTTCCTGCAAGGTCTC
 961 CAGAACCCCTTTGGAAATGGTGAAGGAACCAGCCCAATAGAAGTACAGAGCCAGCTGACAAGTCCTTGTAAAGCTCACTC
1041 CTCAGTCCTTGGCACAGCCATGTTTTGTCTTCTCTCTTGGTATTTCTTCTCTCCCAACTTTAGCCATTTTGCCTTGGAAT
1121 CATGATTACAATTTTTTCCTTTGCAGATGCCTTCCTGGGGGATACTCCTCCCCACCCTAAAGGGTCGCCTGCAACTTAGG
1201 CGGATTGGGTCTCTCTGCTGTGGCGTTCTCTCTTGAGAGACCCTCTGAATTTTAGCACAAAGTGCCTTCTGTTTCACAGC
1281 TGCCACCACCTTTAGAGGAATTTCGTCAGAAAAATGTGGAGGCTCCATATTAATGCATTATTTTTTAAAAAGTTTTGATA
1361 ACTCTTAAAGCATCATTTGCACCTATGTGGGAACTTTGCCTGTTGCAAAGTATTGTGGCCGAGCTGCAGCTGGGAGCCTG
1441 CTTTCTGCCAGTCTTGAGGTTCTGAAGATCAGCTTTGAAAGGAAAGTATGTCCTAGCTTAGCCATTCAGAAGAGAAAAAT
1521 GGAATATCAGAGTTACAGTTGTCAGTGAAACTACTTTGGATTTTAACCTCTTAGAGGAAGAAAAAAGGTTAGGGAAGTGT
1601 CAACTCTGGATGAAGGTGATGTGTTTGCCTCTCAGTCTTTCATTCATAGCCTGCTAGTGAAAAGGAAGTAAATGAGATTC
1681 TTTTGTGTGACTTTGTAGTCTCTTTGTATTACCAAATAGTTGGGGTGTTGACTCCTGTGTGTTTTGCAAGAATGTGTGGT
1761 AAGCCTGGGTAAAGAGAAGGAACTGCGGTGTTGGGAGAGTCTTTGTGTTGGGGAGTGGCAGGGGATGATTTGTTTCAGGG
1841 GAAAATGCCCACATTTTAACTTTTAAACTTCTGAATAAACTGTGTAAAAACAGTAGTGGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agACAUUUAUAGGGAAACGGACu 5'
            |||::: |   ||||||||| 
Target 5' taTGTGGGAA---CTTTGCCTGt 3'
1384 - 1403 158.00 -16.30
2
miRNA  3' agACAUUUA-UAGGGAAACGGAcu 5'
            || |::| || : |||||||  
Target 5' gaTGAAGGTGATGTGTTTGCCTct 3'
1609 - 1632 141.00 -9.60
3
miRNA  3' agacauuuAUAGG-GAAACGGAcu 5'
                  || || :|||||||  
Target 5' cccaacttTAGCCATTTTGCCTtg 3'
1093 - 1116 135.00 -10.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30142361 13 COSMIC
COSN22710357 18 COSMIC
COSN30580500 29 COSMIC
COSN30101156 59 COSMIC
COSN29468659 65 COSMIC
COSN30154607 72 COSMIC
COSN19707488 85 COSMIC
COSN20049606 95 COSMIC
COSN31538090 95 COSMIC
COSN31552691 120 COSMIC
COSN30107609 259 COSMIC
COSN6319542 277 COSMIC
COSN23414371 344 COSMIC
COSN17181711 404 COSMIC
COSN4955239 505 COSMIC
COSN26562522 601 COSMIC
COSN31539045 643 COSMIC
COSN32193425 863 COSMIC
COSN20586740 950 COSMIC
COSN22599775 1114 COSMIC
COSN31577465 1176 COSMIC
COSN31603486 1186 COSMIC
COSN28833009 1243 COSMIC
COSN30543301 1397 COSMIC
COSN17078247 1430 COSMIC
COSN31489299 1507 COSMIC
COSN28648780 1554 COSMIC
COSN20102778 1581 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1223723726 3 dbSNP
rs373678730 4 dbSNP
rs935321585 10 dbSNP
rs923887282 11 dbSNP
rs780839798 12 dbSNP
rs770759485 13 dbSNP
rs774274756 15 dbSNP
rs777707337 16 dbSNP
rs199928721 21 dbSNP
rs752169680 22 dbSNP
rs898625518 23 dbSNP
rs377244384 25 dbSNP
rs754573252 26 dbSNP
rs1434247936 28 dbSNP
rs1393804840 29 dbSNP
rs1431227643 30 dbSNP
rs990595822 36 dbSNP
rs753542463 37 dbSNP
rs766587211 42 dbSNP
rs1190531743 46 dbSNP
rs1191955301 46 dbSNP
rs1419084637 47 dbSNP
rs1443764447 49 dbSNP
rs761153871 49 dbSNP
rs777203991 50 dbSNP
rs547054313 54 dbSNP
rs1371010490 59 dbSNP
rs1423895391 64 dbSNP
rs937528462 80 dbSNP
rs769075212 84 dbSNP
rs927397044 88 dbSNP
rs1436579134 93 dbSNP
rs1046256809 103 dbSNP
rs1441385240 105 dbSNP
rs950067660 108 dbSNP
rs535244835 109 dbSNP
rs759860542 125 dbSNP
rs1222331713 137 dbSNP
rs1333964252 142 dbSNP
rs1326864678 155 dbSNP
rs549040340 156 dbSNP
rs1490842555 162 dbSNP
rs1388595691 163 dbSNP
rs1241661678 182 dbSNP
rs1391669606 184 dbSNP
rs913236194 188 dbSNP
rs1390536116 190 dbSNP
rs151236982 199 dbSNP
rs993858952 200 dbSNP
rs896777407 205 dbSNP
rs1163152854 209 dbSNP
rs956623414 219 dbSNP
rs372463966 236 dbSNP
rs531187111 237 dbSNP
rs1009123653 239 dbSNP
rs890696630 241 dbSNP
rs1317013917 242 dbSNP
rs747566982 243 dbSNP
rs775813861 249 dbSNP
rs564007970 250 dbSNP
rs964246533 251 dbSNP
rs190841841 260 dbSNP
rs1470022701 278 dbSNP
rs1245710859 293 dbSNP
rs1313485120 298 dbSNP
rs1359066142 309 dbSNP
rs1229464762 314 dbSNP
rs1018012906 319 dbSNP
rs986970674 322 dbSNP
rs1218156304 327 dbSNP
rs1408088455 331 dbSNP
rs550334857 343 dbSNP
rs528867831 344 dbSNP
rs748792254 348 dbSNP
rs79726305 349 dbSNP
rs1386933844 351 dbSNP
rs1473066953 353 dbSNP
rs935347243 354 dbSNP
rs1219758682 356 dbSNP
rs994388973 357 dbSNP
rs923913672 365 dbSNP
rs982066259 373 dbSNP
rs1489105611 388 dbSNP
rs539912909 389 dbSNP
rs528275250 390 dbSNP
rs1335141039 393 dbSNP
rs143538336 397 dbSNP
rs73413212 398 dbSNP
rs1279514171 410 dbSNP
rs1230316186 422 dbSNP
rs1348581994 422 dbSNP
rs1276574852 424 dbSNP
rs990648310 426 dbSNP
rs1323084913 429 dbSNP
rs1235447491 435 dbSNP
rs777247714 436 dbSNP
rs1026739896 437 dbSNP
rs1346199788 439 dbSNP
rs1302704709 440 dbSNP
rs545582593 442 dbSNP
rs1180945727 443 dbSNP
rs1362710368 459 dbSNP
rs755395282 461 dbSNP
rs1231106532 467 dbSNP
rs557148426 505 dbSNP
rs1182255761 513 dbSNP
rs1400523774 517 dbSNP
rs1428075517 523 dbSNP
rs1406364095 537 dbSNP
rs1467878413 539 dbSNP
rs1174808824 546 dbSNP
rs961087292 549 dbSNP
rs1019317347 550 dbSNP
rs1478665795 552 dbSNP
rs1053055085 554 dbSNP
rs1415437214 555 dbSNP
rs1427982176 556 dbSNP
rs925186164 557 dbSNP
rs1478563132 560 dbSNP
rs1007878256 565 dbSNP
rs1345019434 567 dbSNP
rs1221857222 569 dbSNP
rs575192266 579 dbSNP
rs1258015181 583 dbSNP
rs557199037 590 dbSNP
rs747618201 597 dbSNP
rs942522494 615 dbSNP
rs1270697286 619 dbSNP
rs954978967 631 dbSNP
rs1029240735 643 dbSNP
rs535646049 644 dbSNP
rs541891552 651 dbSNP
rs955308625 661 dbSNP
rs1479182962 673 dbSNP
rs574739039 674 dbSNP
rs996367279 685 dbSNP
rs1377851181 686 dbSNP
rs1025433894 688 dbSNP
rs1167693332 705 dbSNP
rs972390828 706 dbSNP
rs962392962 709 dbSNP
rs893925735 711 dbSNP
rs866820826 713 dbSNP
rs77565502 718 dbSNP
rs535071077 721 dbSNP
rs1002207367 734 dbSNP
rs1331889325 737 dbSNP
rs565080150 747 dbSNP
rs753518773 748 dbSNP
rs1227057470 749 dbSNP
rs1268170491 750 dbSNP
rs1000047316 752 dbSNP
rs780975473 755 dbSNP
rs751209765 756 dbSNP
rs1014304475 758 dbSNP
rs891871914 781 dbSNP
rs1342566720 788 dbSNP
rs1271016552 789 dbSNP
rs1053157309 790 dbSNP
rs1046420556 792 dbSNP
rs935991408 799 dbSNP
rs949379555 805 dbSNP
rs559243524 807 dbSNP
rs1054930125 811 dbSNP
rs931181575 815 dbSNP
rs1043602390 818 dbSNP
rs546679390 823 dbSNP
rs1391598451 824 dbSNP
rs911024170 826 dbSNP
rs533250058 831 dbSNP
rs1367044261 832 dbSNP
rs1173542359 835 dbSNP
rs779619483 844 dbSNP
rs987032250 845 dbSNP
rs1357184620 847 dbSNP
rs79817222 848 dbSNP
rs570290315 851 dbSNP
rs1185546787 854 dbSNP
rs1485272129 858 dbSNP
rs912309982 860 dbSNP
rs986496325 865 dbSNP
rs1466481744 874 dbSNP
rs1189593943 876 dbSNP
rs953658946 880 dbSNP
rs962342933 886 dbSNP
rs1029250767 889 dbSNP
rs548832251 894 dbSNP
rs909566192 901 dbSNP
rs1201800809 904 dbSNP
rs996806757 913 dbSNP
rs958243980 915 dbSNP
rs1369086793 922 dbSNP
rs1453184761 924 dbSNP
rs980338674 929 dbSNP
rs1032948973 934 dbSNP
rs970721057 938 dbSNP
rs1335802004 942 dbSNP
rs1380370275 948 dbSNP
rs1397660947 949 dbSNP
rs999697631 950 dbSNP
rs1014833260 951 dbSNP
rs956238398 955 dbSNP
rs1273855314 956 dbSNP
rs1214198024 958 dbSNP
rs148729338 961 dbSNP
rs1360205237 964 dbSNP
rs1286261248 969 dbSNP
rs568001745 978 dbSNP
rs546300326 981 dbSNP
rs1184068192 985 dbSNP
rs1257488106 989 dbSNP
rs1031689865 998 dbSNP
rs114299740 999 dbSNP
rs1414330921 1004 dbSNP
rs765402887 1009 dbSNP
rs1176005878 1013 dbSNP
rs563833955 1019 dbSNP
rs1357173091 1028 dbSNP
rs1467391093 1034 dbSNP
rs1303295680 1042 dbSNP
rs1372505043 1043 dbSNP
rs1467685745 1044 dbSNP
rs1039454358 1051 dbSNP
rs1350628418 1060 dbSNP
rs1007592835 1062 dbSNP
rs1013544977 1070 dbSNP
rs895130009 1073 dbSNP
rs1281017279 1074 dbSNP
rs1310741542 1077 dbSNP
rs1354611003 1082 dbSNP
rs1212700772 1086 dbSNP
rs1257015531 1088 dbSNP
rs116829549 1097 dbSNP
rs1203694488 1102 dbSNP
rs145235541 1104 dbSNP
rs919834412 1113 dbSNP
rs1198886148 1116 dbSNP
rs1163939331 1119 dbSNP
rs1423336241 1121 dbSNP
rs1037310090 1127 dbSNP
rs1443803401 1131 dbSNP
rs201810594 1144 dbSNP
rs1353746760 1150 dbSNP
rs918436011 1154 dbSNP
rs764543103 1160 dbSNP
rs1403804366 1161 dbSNP
rs35552191 1162 dbSNP
rs767360632 1168 dbSNP
rs1280909523 1170 dbSNP
rs939859318 1171 dbSNP
rs1369270412 1178 dbSNP
rs912320034 1182 dbSNP
rs986509139 1184 dbSNP
rs953710642 1186 dbSNP
rs941091745 1187 dbSNP
rs563450148 1191 dbSNP
rs1226785546 1198 dbSNP
rs1277403239 1200 dbSNP
rs1483387794 1201 dbSNP
rs760909592 1202 dbSNP
rs1233510017 1209 dbSNP
rs980165672 1216 dbSNP
rs144312505 1224 dbSNP
rs917478621 1234 dbSNP
rs1170342844 1235 dbSNP
rs1305914729 1241 dbSNP
rs993109921 1242 dbSNP
rs80033474 1243 dbSNP
rs1247108182 1245 dbSNP
rs1359139596 1247 dbSNP
rs199968631 1258 dbSNP
rs867703460 1260 dbSNP
rs1436687009 1261 dbSNP
rs1287952770 1280 dbSNP
rs1449638063 1286 dbSNP
rs966813083 1287 dbSNP
rs968765415 1289 dbSNP
rs1297046746 1290 dbSNP
rs1439437086 1291 dbSNP
rs772507245 1295 dbSNP
rs1351210995 1303 dbSNP
rs541426280 1305 dbSNP
rs1303357028 1315 dbSNP
rs895222941 1316 dbSNP
rs1383153064 1322 dbSNP
rs577444354 1325 dbSNP
rs181619868 1346 dbSNP
rs995515558 1347 dbSNP
rs760079643 1351 dbSNP
rs898438121 1354 dbSNP
rs1036914186 1358 dbSNP
rs939837486 1364 dbSNP
rs1479709327 1372 dbSNP
rs1248490750 1382 dbSNP
rs1248576610 1384 dbSNP
rs139275403 1385 dbSNP
rs1050844899 1401 dbSNP
rs753868623 1402 dbSNP
rs921013459 1404 dbSNP
rs1490265223 1407 dbSNP
rs1415278951 1409 dbSNP
rs1405446175 1410 dbSNP
rs62402194 1420 dbSNP
rs1242778522 1421 dbSNP
rs1318009520 1424 dbSNP
rs1306942089 1434 dbSNP
rs1436915874 1442 dbSNP
rs935647983 1451 dbSNP
rs925529586 1470 dbSNP
rs1366433855 1471 dbSNP
rs978345416 1475 dbSNP
rs966863976 1485 dbSNP
rs1025130151 1487 dbSNP
rs1044174240 1487 dbSNP
rs1222612656 1494 dbSNP
rs541911437 1508 dbSNP
rs554967765 1524 dbSNP
rs948362499 1526 dbSNP
rs572982310 1529 dbSNP
rs190270305 1536 dbSNP
rs4598 1554 dbSNP
rs11545298 1569 dbSNP
rs1363343508 1574 dbSNP
rs1239143257 1578 dbSNP
rs1033759022 1582 dbSNP
rs1299736497 1586 dbSNP
rs145549266 1587 dbSNP
rs1176119341 1588 dbSNP
rs1409179172 1590 dbSNP
rs146244580 1620 dbSNP
rs780781261 1627 dbSNP
rs898454893 1637 dbSNP
rs1389793062 1638 dbSNP
rs1414266122 1646 dbSNP
rs924900647 1652 dbSNP
rs1308416554 1653 dbSNP
rs866162842 1654 dbSNP
rs1200251038 1657 dbSNP
rs1287778420 1658 dbSNP
rs1348764429 1667 dbSNP
rs1230417646 1674 dbSNP
rs1015943557 1677 dbSNP
rs1004103414 1681 dbSNP
rs968882919 1685 dbSNP
rs1198495573 1690 dbSNP
rs1280551706 1694 dbSNP
rs1442901685 1695 dbSNP
rs1267080369 1699 dbSNP
rs528054099 1703 dbSNP
rs1203789657 1706 dbSNP
rs1207217339 1715 dbSNP
rs1248921279 1716 dbSNP
rs1018093531 1723 dbSNP
rs986243919 1725 dbSNP
rs1182370866 1727 dbSNP
rs1428181045 1734 dbSNP
rs186933413 1736 dbSNP
rs891035403 1737 dbSNP
rs1260547306 1739 dbSNP
rs143441503 1749 dbSNP
rs1171186326 1758 dbSNP
rs1214272585 1759 dbSNP
rs1415527202 1763 dbSNP
rs868443083 1764 dbSNP
rs1307988124 1777 dbSNP
rs1368709237 1783 dbSNP
rs373767064 1786 dbSNP
rs578185840 1787 dbSNP
rs899589188 1788 dbSNP
rs1330733130 1798 dbSNP
rs1231388076 1805 dbSNP
rs1283303856 1808 dbSNP
rs1001353878 1825 dbSNP
rs1384670181 1830 dbSNP
rs1054172706 1842 dbSNP
rs1227520455 1850 dbSNP
rs1272399706 1853 dbSNP
rs897064899 1860 dbSNP
rs1205239316 1864 dbSNP
rs1015556783 1871 dbSNP
rs116120255 1873 dbSNP
rs1279721655 1874 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_007271 | 3UTR | AUUUGCACCUAUGUGGGAACUUUGCCUGUUGCAAAGUAUUGUGGCCGAGCUGCAGCUGGGAGCCUGCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_007271 | 3UTR | AGGCUCCAUAUUAAUGCAUUAUUUUUUAAAAAGUUUUGAUAACUCUUAAAGCAUCAUUUGCACCUAUGUGGGAACUUUGCCUGUUGCAAAGUAUUGUGGCCGAGCUGCAGCUGGGAGCCUGCUUUCUGCCAGUCUUGAGGUUCUGAAGAUCAGCUUUGAAAGGAAAGUAUGUCCUAGCUUAGCCAUUCAGAAGAGAAAAAUGGAAUAUCAGAGUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_007271 | 3UTR | UCUUAAAGCAUCAUUUGCACCUAUGUGGGAACUUUGCCUGUUGCAAAGUAUUGUGGCCGAGCUGCAGCUGGGAGCCUGCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_007271 | 3UTR | UUUUGAUAACUCUUAAAGCAUCAUUUGCACCUAUGUGGGAACUUUGCCUGUUGCAAAGUAUUGUGGCCGAGCUGCAGCUGGGAGCCUGCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_007271 | 3UTR | AUAACUCUUAAAGCAUCAUUUGCACCUAUGUGGGAACUUUGCCUGUUGCAAAGUAUUGUGGCCGAGCUGCAGCUGGGAGCCUGCUUUCUGCCAGUCUUGAGGUUCUGAAGAUCAGCUUUGAAAGGAAAGUAUGUCCUAGCUUAGCCAUUCAGAAGAGAAAAAUGGAAUAUCAGAGUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_007271 | 3UTR | UGCAUUAUUUUUUAAAAAGUUUUGAUAACUCUUAAAGCAUCAUUUGCACCUAUGUGGGAACUUUGCCUGUUGCAAAGUAUUGUGGCCGAGCUGCAGCUGGGAGCCUGCUUUCUGCCAGUCUUGAGGUUCUGAAGAUCAGCUUUGAAAGGAAAGUAUGUCCUAGCUUAGCCAUUCAGAAGAGAAAAAUGGAAUAUCAGAGUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_007271 | 3UTR | AUAUUAAUGCAUUAUUUUUUAAAAAGUUUUGAUAACUCUUAAAGCAUCAUUUGCACCUAUGUGGGAACUUUGCCUGUUGCAAAGUAUUGUGGCCGAGCUGCAGCUGGGAGCCUGCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000229812.7 | 3UTR | UUUUAAAAAGUUUUGAUAACUCUUAAAGCAUCAUUUGCACCUAUGUGGGAACUUUGCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
70 hsa-miR-4742-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT065632 CLIC4 chloride intracellular channel 4 2 4
MIRT068170 TXLNA taxilin alpha 2 2
MIRT119024 TSN translin 2 2
MIRT165212 GRAMD3 GRAM domain containing 2B 2 2
MIRT175254 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT213228 REST RE1 silencing transcription factor 2 6
MIRT296337 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT316776 FOXC1 forkhead box C1 2 2
MIRT453943 XRCC6 X-ray repair cross complementing 6 2 6
MIRT454599 RPL13A ribosomal protein L13a 2 2
MIRT458485 RMI1 RecQ mediated genome instability 1 2 6
MIRT458650 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459240 ADRBK1 G protein-coupled receptor kinase 2 2 2
MIRT461008 SYT7 synaptotagmin 7 2 2
MIRT462026 RIF1 replication timing regulatory factor 1 2 2
MIRT462103 TMEM214 transmembrane protein 214 2 2
MIRT463255 ZIC5 Zic family member 5 2 4
MIRT465190 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT470507 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT472356 TSPAN1 tetraspanin 1 2 2
MIRT473260 MIDN midnolin 2 2
MIRT477527 EIF4G2 eukaryotic translation initiation factor 4 gamma 2 2 4
MIRT485182 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 4
MIRT486461 MDM2 MDM2 proto-oncogene 2 2
MIRT492760 PER1 period circadian clock 1 2 8
MIRT496703 TRIM39 tripartite motif containing 39 2 2
MIRT497227 MORC2 MORC family CW-type zinc finger 2 2 2
MIRT499582 INTU inturned planar cell polarity protein 2 4
MIRT504081 C9orf40 chromosome 9 open reading frame 40 2 6
MIRT505484 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT513255 FBXO17 F-box protein 17 2 2
MIRT525061 FRK fyn related Src family tyrosine kinase 2 2
MIRT528798 RAB32 RAB32, member RAS oncogene family 2 2
MIRT534357 SFT2D2 SFT2 domain containing 2 2 2
MIRT538731 CAPN1 calpain 1 2 2
MIRT550792 WARS2 tryptophanyl tRNA synthetase 2, mitochondrial 2 2
MIRT553994 SRPR SRP receptor alpha subunit 2 4
MIRT568102 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT570107 SLC18B1 solute carrier family 18 member B1 2 2
MIRT570823 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT572004 HMGB1 high mobility group box 1 2 2
MIRT572352 PCYT2 phosphate cytidylyltransferase 2, ethanolamine 2 2
MIRT609716 TMEM132C transmembrane protein 132C 2 2
MIRT613982 LRRC40 leucine rich repeat containing 40 2 2
MIRT620740 CCL16 C-C motif chemokine ligand 16 2 2
MIRT625074 C15orf41 chromosome 15 open reading frame 41 2 4
MIRT627941 NNT nicotinamide nucleotide transhydrogenase 2 2
MIRT629941 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT633396 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT635846 ZNF264 zinc finger protein 264 2 2
MIRT638086 ZNF652 zinc finger protein 652 2 2
MIRT643996 TCHP trichoplein keratin filament binding 2 2
MIRT660020 C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 2 2
MIRT660161 BRCC3 BRCA1/BRCA2-containing complex subunit 3 2 2
MIRT668887 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT676729 METTL14 methyltransferase like 14 2 2
MIRT677210 MURC caveolae associated protein 4 2 2
MIRT685949 PTGIS prostaglandin I2 synthase 2 2
MIRT687816 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT689900 SOD2 superoxide dismutase 2 2 2
MIRT698214 TMEM248 transmembrane protein 248 2 2
MIRT698279 TMEM2 transmembrane protein 2 2 2
MIRT698758 STK4 serine/threonine kinase 4 2 2
MIRT698789 STK38 serine/threonine kinase 38 2 2
MIRT703152 GPR137C G protein-coupled receptor 137C 2 2
MIRT704408 CTPS1 CTP synthase 1 2 2
MIRT705067 C4orf32 family with sequence similarity 241 member A 2 2
MIRT710201 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT714495 HSPA4 heat shock protein family A (Hsp70) member 4 2 2
MIRT720082 TNRC6B trinucleotide repeat containing 6B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4742-5p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4742-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4742-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4742-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4742-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4742-5p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4742-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-4742-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-4742-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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